// Retained and Spliced Intron # retained_intron 43037-43442 (orient:-) max_ev_support = 3 # spliced_intron 43037-43442 (orient:-) max_ev_support = 2 scaffold_1 - intron 43037-43442 asmbl_2,asmbl_3,asmbl_8 scaffold_1 - retained_intron 43037-43442 asmbl_1 // Exon Skipping and Retention # skipped_exon 43470-45446 (orient:-) max_ev_support = 1 # retained_exon 44039-44086 (orient:-) max_ev_support = 2 scaffold_1 - retained_exons 44039-44086 asmbl_2,asmbl_8 scaffold_1 - intron_skips_exon 43470-45446 asmbl_3 // Exon Skipping and Retention # skipped_exon 44087-45989 (orient:-) max_ev_support = 2 # retained_exon 45447-45506 (orient:-) max_ev_support = 1 scaffold_1 - retained_exons 45447-45506 asmbl_3 scaffold_1 - intron_skips_exon 44087-45989 asmbl_2,asmbl_8 // Retained and Spliced Intron # retained_intron 39649-39790 (orient:-) max_ev_support = 1 # spliced_intron 39649-39790 (orient:-) max_ev_support = 2 scaffold_1 - intron 39649-39790 asmbl_1,asmbl_2,asmbl_3 scaffold_1 - retained_intron 39649-39790 asmbl_8 // Retained and Spliced Intron # retained_intron 175065-175198 (orient:-) max_ev_support = 3 # spliced_intron 175065-175198 (orient:-) max_ev_support = 2 scaffold_1 - intron 175065-175198 asmbl_14,asmbl_15 scaffold_1 - retained_intron 175065-175198 asmbl_11,asmbl_12,asmbl_13 // Retained and Spliced Intron # retained_intron 175417-175492 (orient:-) max_ev_support = 2 # spliced_intron 175417-175492 (orient:-) max_ev_support = 2 scaffold_1 - intron 175417-175492 asmbl_11,asmbl_12,asmbl_14,asmbl_15 scaffold_1 - retained_intron 175417-175492 asmbl_13 // Retained and Spliced Intron # retained_intron 857694-857888 (orient:-) max_ev_support = 2 # spliced_intron 857694-857888 (orient:-) max_ev_support = 2 scaffold_1 - intron 857694-857888 asmbl_26,asmbl_28 scaffold_1 - retained_intron 857694-857888 asmbl_27 // Retained and Spliced Intron # retained_intron 907269-907398 (orient:-) max_ev_support = 1 # spliced_intron 907269-907398 (orient:-) max_ev_support = 1 scaffold_1 - intron 907269-907398 asmbl_35 scaffold_1 - retained_intron 907269-907398 asmbl_34 // Retained and Spliced Intron # retained_intron 907269-907587 (orient:-) max_ev_support = 1 # spliced_intron 907269-907587 (orient:-) max_ev_support = 1 scaffold_1 - intron 907269-907587 asmbl_36 scaffold_1 - retained_intron 907269-907587 asmbl_34 // Exon Skipping and Retention # skipped_exon 977974-978459 (orient:-) max_ev_support = 3 # retained_exon 978085-978183 (orient:-) max_ev_support = 1 scaffold_1 - retained_exons 978085-978183 asmbl_44 scaffold_1 - intron_skips_exon 977974-978459 asmbl_43 // Retained and Spliced Intron # retained_intron 1250261-1250375 (orient:-) max_ev_support = 3 # spliced_intron 1250261-1250375 (orient:-) max_ev_support = 3 scaffold_1 - intron 1250261-1250375 asmbl_57 scaffold_1 - retained_intron 1250261-1250375 asmbl_58 // Retained and Spliced Intron # retained_intron 1271968-1272117 (orient:-) max_ev_support = 2 # spliced_intron 1271968-1272117 (orient:-) max_ev_support = 3 scaffold_1 - intron 1271968-1272117 asmbl_61 scaffold_1 - retained_intron 1271968-1272117 asmbl_62 // Retained and Spliced Intron # retained_intron 1420788-1420966 (orient:-) max_ev_support = 2 # spliced_intron 1420788-1420966 (orient:-) max_ev_support = 3 scaffold_1 - intron 1420788-1420966 asmbl_66 scaffold_1 - retained_intron 1420788-1420966 asmbl_67 // Retained and Spliced Intron # retained_intron 1432116-1432283 (orient:-) max_ev_support = 3 # spliced_intron 1432116-1432283 (orient:-) max_ev_support = 2 scaffold_1 - intron 1432116-1432283 asmbl_70 scaffold_1 - retained_intron 1432116-1432283 asmbl_69 // Retained and Spliced Intron # retained_intron 1608748-1608955 (orient:-) max_ev_support = 2 # spliced_intron 1608748-1608955 (orient:-) max_ev_support = 2 scaffold_1 - intron 1608748-1608955 asmbl_83 scaffold_1 - retained_intron 1608748-1608955 asmbl_82 // Exon Skipping and Retention # skipped_exon 1977614-1978889 (orient:-) max_ev_support = 1 # retained_exon 1978703-1978798 (orient:-) max_ev_support = 1 scaffold_1 - retained_exons 1978703-1978798 asmbl_99 scaffold_1 - intron_skips_exon 1977614-1978889 asmbl_100 // Retained and Spliced Intron # retained_intron 2740187-2740762 (orient:-) max_ev_support = 2 # spliced_intron 2740187-2740762 (orient:-) max_ev_support = 1 scaffold_1 - intron 2740187-2740762 asmbl_130 scaffold_1 - retained_intron 2740187-2740762 asmbl_123,asmbl_124,asmbl_125 // Retained and Spliced Intron # retained_intron 2782343-2782775 (orient:-) max_ev_support = 2 # spliced_intron 2782343-2782775 (orient:-) max_ev_support = 2 scaffold_1 - intron 2782343-2782775 asmbl_134 scaffold_1 - retained_intron 2782343-2782775 asmbl_132,asmbl_133 // Exon Skipping and Retention # skipped_exon 3146137-3146608 (orient:-) max_ev_support = 2 # retained_exon 3146428-3146530 (orient:-) max_ev_support = 2 scaffold_1 - retained_exons 3146428-3146530 asmbl_137 scaffold_1 - intron_skips_exon 3146137-3146608 asmbl_136 // Retained and Spliced Intron # retained_intron 3270179-3270358 (orient:-) max_ev_support = 1 # spliced_intron 3270179-3270358 (orient:-) max_ev_support = 1 scaffold_1 - intron 3270179-3270358 asmbl_143 scaffold_1 - retained_intron 3270179-3270358 asmbl_141,asmbl_145 // Retained and Spliced Intron # retained_intron 3270179-3270373 (orient:-) max_ev_support = 1 # spliced_intron 3270179-3270373 (orient:-) max_ev_support = 1 scaffold_1 - intron 3270179-3270373 asmbl_144 scaffold_1 - retained_intron 3270179-3270373 asmbl_141,asmbl_145 // Retained and Spliced Intron # retained_intron 3270179-3270864 (orient:-) max_ev_support = 1 # spliced_intron 3270179-3270864 (orient:-) max_ev_support = 2 scaffold_1 - intron 3270179-3270864 asmbl_140,asmbl_142 scaffold_1 - retained_intron 3270179-3270864 asmbl_141 // Retained and Spliced Intron # retained_intron 3270497-3270864 (orient:-) max_ev_support = 1 # spliced_intron 3270497-3270864 (orient:-) max_ev_support = 1 scaffold_1 - intron 3270497-3270864 asmbl_144,asmbl_145 scaffold_1 - retained_intron 3270497-3270864 asmbl_141,asmbl_143 // Exon Skipping and Retention # skipped_exon 3270179-3270864 (orient:-) max_ev_support = 2 # retained_exon 3270374-3270496 (orient:-) max_ev_support = 1 scaffold_1 - retained_exons 3270374-3270496 asmbl_144 scaffold_1 - intron_skips_exon 3270179-3270864 asmbl_140,asmbl_142 // Exon Skipping and Retention # skipped_exon 3494601-3495178 (orient:-) max_ev_support = 1 # retained_exon 3494781-3494810 (orient:-) max_ev_support = 2 scaffold_1 - retained_exons 3494781-3494810 asmbl_146,asmbl_147,asmbl_148,asmbl_150,asmbl_151,asmbl_152,asmbl_155 scaffold_1 - intron_skips_exon 3494601-3495178 asmbl_149,asmbl_153,asmbl_154 // Exon Skipping and Retention # skipped_exon 3497794-3498653 (orient:-) max_ev_support = 2 # retained_exon 3498449-3498541 (orient:-) max_ev_support = 2 scaffold_1 - retained_exons 3498449-3498541 asmbl_146,asmbl_147,asmbl_149,asmbl_151,asmbl_152,asmbl_153 scaffold_1 - intron_skips_exon 3497794-3498653 asmbl_148,asmbl_150,asmbl_154 // Exon Skipping and Retention # skipped_exon 3496862-3497688 (orient:-) max_ev_support = 2 # retained_exon 3497332-3497448 (orient:-) max_ev_support = 2 scaffold_1 - retained_exons 3497332-3497448 asmbl_147,asmbl_148,asmbl_149,asmbl_151,asmbl_152,asmbl_153,asmbl_154 scaffold_1 - intron_skips_exon 3496862-3497688 asmbl_146,asmbl_150 // Exon Skipping and Retention # skipped_exon 3502214-3503905 (orient:-) max_ev_support = 2 # retained_exon 3503419-3503774 (orient:-) max_ev_support = 2 scaffold_1 - retained_exons 3503419-3503499,3503673-3503774 asmbl_147,asmbl_149 scaffold_1 - intron_skips_exon 3502214-3503905 asmbl_146,asmbl_148,asmbl_150,asmbl_151,asmbl_152,asmbl_153,asmbl_154 // Retained and Spliced Intron # retained_intron 3493880-3494497 (orient:-) max_ev_support = 1 # spliced_intron 3493880-3494497 (orient:-) max_ev_support = 2 scaffold_1 - intron 3493880-3494497 asmbl_146,asmbl_147,asmbl_148,asmbl_150,asmbl_151,asmbl_152 scaffold_1 - retained_intron 3493880-3494497 asmbl_149,asmbl_153,asmbl_154,asmbl_155 // Retained and Spliced Intron # retained_intron 3498732-3498894 (orient:-) max_ev_support = 1 # spliced_intron 3498732-3498894 (orient:-) max_ev_support = 2 scaffold_1 - intron 3498732-3498894 asmbl_146,asmbl_147,asmbl_148,asmbl_149,asmbl_150,asmbl_151,asmbl_153,asmbl_154 scaffold_1 - retained_intron 3498732-3498894 asmbl_152 // Retained and Spliced Intron # retained_intron 4010865-4010976 (orient:-) max_ev_support = 2 # spliced_intron 4010865-4010976 (orient:-) max_ev_support = 1 scaffold_1 - intron 4010865-4010976 asmbl_175 scaffold_1 - retained_intron 4010865-4010976 asmbl_174 // Retained and Spliced Intron # retained_intron 4386393-4386813 (orient:-) max_ev_support = 3 # spliced_intron 4386393-4386813 (orient:-) max_ev_support = 2 scaffold_1 - intron 4386393-4386813 asmbl_186 scaffold_1 - retained_intron 4386393-4386813 asmbl_185 // Retained and Spliced Intron # retained_intron 4389591-4389688 (orient:-) max_ev_support = 2 # spliced_intron 4389591-4389688 (orient:-) max_ev_support = 2 scaffold_1 - intron 4389591-4389688 asmbl_191 scaffold_1 - retained_intron 4389591-4389688 asmbl_190 // Exon Skipping and Retention # skipped_exon 4567861-4569888 (orient:-) max_ev_support = 1 # retained_exon 4568662-4568844 (orient:-) max_ev_support = 3 scaffold_1 - retained_exons 4568662-4568844 asmbl_198,asmbl_200,asmbl_201 scaffold_1 - intron_skips_exon 4567861-4569888 asmbl_207 // Retained and Spliced Intron # retained_intron 4567214-4567837 (orient:-) max_ev_support = 2 # spliced_intron 4567214-4567837 (orient:-) max_ev_support = 1 scaffold_1 - intron 4567214-4567837 asmbl_207 scaffold_1 - retained_intron 4567214-4567837 asmbl_201,asmbl_205 // Exon Skipping and Retention # skipped_exon 4567214-4568661 (orient:-) max_ev_support = 2 # retained_exon 4567838-4567860 (orient:-) max_ev_support = 1 scaffold_1 - retained_exons 4567838-4567860 asmbl_207 scaffold_1 - intron_skips_exon 4567214-4568661 asmbl_198,asmbl_200 // Retained and Spliced Intron # retained_intron 4864390-4864489 (orient:-) max_ev_support = 2 # spliced_intron 4864390-4864489 (orient:-) max_ev_support = 2 scaffold_1 - intron 4864390-4864489 asmbl_218 scaffold_1 - retained_intron 4864390-4864489 asmbl_217 // Retained and Spliced Intron # retained_intron 4864196-4864311 (orient:-) max_ev_support = 2 # spliced_intron 4864196-4864311 (orient:-) max_ev_support = 2 scaffold_1 - intron 4864196-4864311 asmbl_217 scaffold_1 - retained_intron 4864196-4864311 asmbl_218 // Retained and Spliced Intron # retained_intron 4864196-4864320 (orient:-) max_ev_support = 2 # spliced_intron 4864196-4864320 (orient:-) max_ev_support = 1 scaffold_1 - intron 4864196-4864320 asmbl_219 scaffold_1 - retained_intron 4864196-4864320 asmbl_218 // Retained and Spliced Intron # retained_intron 4927829-4928203 (orient:-) max_ev_support = 1 # spliced_intron 4927829-4928203 (orient:-) max_ev_support = 2 scaffold_1 - intron 4927829-4928203 asmbl_228 scaffold_1 - retained_intron 4927829-4928203 asmbl_229 // Retained and Spliced Intron # retained_intron 5220774-5220883 (orient:-) max_ev_support = 1 # spliced_intron 5220774-5220883 (orient:-) max_ev_support = 2 scaffold_1 - intron 5220774-5220883 asmbl_248,asmbl_249 scaffold_1 - retained_intron 5220774-5220883 asmbl_250 // Retained and Spliced Intron # retained_intron 5542906-5543635 (orient:-) max_ev_support = 3 # spliced_intron 5542906-5543635 (orient:-) max_ev_support = 2 scaffold_1 - intron 5542906-5543635 asmbl_272,asmbl_273 scaffold_1 - retained_intron 5542906-5543635 asmbl_271 // Retained and Spliced Intron # retained_intron 5543912-5544420 (orient:-) max_ev_support = 2 # spliced_intron 5543912-5544420 (orient:-) max_ev_support = 1 scaffold_1 - intron 5543912-5544420 asmbl_271,asmbl_272 scaffold_1 - retained_intron 5543912-5544420 asmbl_273 // Retained and Spliced Intron # retained_intron 5624546-5624630 (orient:-) max_ev_support = 1 # spliced_intron 5624546-5624630 (orient:-) max_ev_support = 2 scaffold_1 - intron 5624546-5624630 asmbl_281 scaffold_1 - retained_intron 5624546-5624630 asmbl_282 // Retained and Spliced Intron # retained_intron 5731015-5731118 (orient:-) max_ev_support = 1 # spliced_intron 5731015-5731118 (orient:-) max_ev_support = 2 scaffold_1 - intron 5731015-5731118 asmbl_291,asmbl_292,asmbl_294 scaffold_1 - retained_intron 5731015-5731118 asmbl_293 // Retained and Spliced Intron # retained_intron 5746244-5746355 (orient:-) max_ev_support = 1 # spliced_intron 5746244-5746355 (orient:-) max_ev_support = 2 scaffold_1 - intron 5746244-5746355 asmbl_299 scaffold_1 - retained_intron 5746244-5746355 asmbl_300 // Retained and Spliced Intron # retained_intron 5962385-5962489 (orient:-) max_ev_support = 2 # spliced_intron 5962385-5962489 (orient:-) max_ev_support = 2 scaffold_1 - intron 5962385-5962489 asmbl_305 scaffold_1 - retained_intron 5962385-5962489 asmbl_304 // Retained and Spliced Intron # retained_intron 5962592-5962698 (orient:-) max_ev_support = 2 # spliced_intron 5962592-5962698 (orient:-) max_ev_support = 2 scaffold_1 - intron 5962592-5962698 asmbl_305 scaffold_1 - retained_intron 5962592-5962698 asmbl_304 // Retained and Spliced Intron # retained_intron 5962878-5963181 (orient:-) max_ev_support = 2 # spliced_intron 5962878-5963181 (orient:-) max_ev_support = 2 scaffold_1 - intron 5962878-5963181 asmbl_305 scaffold_1 - retained_intron 5962878-5963181 asmbl_306 // Exon Skipping and Retention # skipped_exon 5996412-5997450 (orient:-) max_ev_support = 2 # retained_exon 5996766-5996816 (orient:-) max_ev_support = 2 scaffold_1 - retained_exons 5996766-5996816 asmbl_310 scaffold_1 - intron_skips_exon 5996412-5997450 asmbl_311,asmbl_314 // Exon Skipping and Retention # skipped_exon 6126767-6127234 (orient:-) max_ev_support = 1 # retained_exon 6126972-6127069 (orient:-) max_ev_support = 2 scaffold_1 - retained_exons 6126972-6127069 asmbl_317,asmbl_318 scaffold_1 - intron_skips_exon 6126767-6127234 asmbl_320 // Retained and Spliced Intron # retained_intron 6215109-6215240 (orient:-) max_ev_support = 3 # spliced_intron 6215109-6215240 (orient:-) max_ev_support = 3 scaffold_1 - intron 6215109-6215240 asmbl_323 scaffold_1 - retained_intron 6215109-6215240 asmbl_322 // Retained and Spliced Intron # retained_intron 6283987-6284587 (orient:-) max_ev_support = 3 # spliced_intron 6283987-6284587 (orient:-) max_ev_support = 3 scaffold_1 - intron 6283987-6284587 asmbl_335,asmbl_337,asmbl_342,asmbl_344 scaffold_1 - retained_intron 6283987-6284587 asmbl_334 // Retained and Spliced Intron # retained_intron 6283987-6285080 (orient:-) max_ev_support = 5 # spliced_intron 6283987-6285080 (orient:-) max_ev_support = 2 scaffold_1 - intron 6283987-6285080 asmbl_338,asmbl_345,asmbl_346 scaffold_1 - retained_intron 6283987-6285080 asmbl_334 // Retained and Spliced Intron # retained_intron 6284662-6285080 (orient:-) max_ev_support = 3 # spliced_intron 6284662-6285080 (orient:-) max_ev_support = 3 scaffold_1 - intron 6284662-6285080 asmbl_335,asmbl_337,asmbl_342,asmbl_344 scaffold_1 - retained_intron 6284662-6285080 asmbl_334 // Exon Skipping and Retention # skipped_exon 6283222-6283902 (orient:-) max_ev_support = 2 # retained_exon 6283604-6283664 (orient:-) max_ev_support = 2 scaffold_1 - retained_exons 6283604-6283664 asmbl_335,asmbl_341,asmbl_344,asmbl_346 scaffold_1 - intron_skips_exon 6283222-6283902 asmbl_338,asmbl_339,asmbl_345 // Exon Skipping and Retention # skipped_exon 6283987-6285080 (orient:-) max_ev_support = 2 # retained_exon 6284588-6284661 (orient:-) max_ev_support = 3 scaffold_1 - retained_exons 6284588-6284661 asmbl_335,asmbl_337,asmbl_342,asmbl_344 scaffold_1 - intron_skips_exon 6283987-6285080 asmbl_338,asmbl_345,asmbl_346 // Retained and Spliced Intron # retained_intron 6283222-6283603 (orient:-) max_ev_support = 1 # spliced_intron 6283222-6283603 (orient:-) max_ev_support = 2 scaffold_1 - intron 6283222-6283603 asmbl_335,asmbl_341,asmbl_344,asmbl_346 scaffold_1 - retained_intron 6283222-6283603 asmbl_337 // Retained and Spliced Intron # retained_intron 6299655-6299772 (orient:-) max_ev_support = 3 # spliced_intron 6299655-6299772 (orient:-) max_ev_support = 2 scaffold_1 - intron 6299655-6299772 asmbl_348 scaffold_1 - retained_intron 6299655-6299772 asmbl_347,asmbl_349 // Retained and Spliced Intron # retained_intron 6299428-6299553 (orient:-) max_ev_support = 2 # spliced_intron 6299428-6299553 (orient:-) max_ev_support = 3 scaffold_1 - intron 6299428-6299553 asmbl_347,asmbl_348 scaffold_1 - retained_intron 6299428-6299553 asmbl_349 // Retained and Spliced Intron # retained_intron 6297508-6297670 (orient:-) max_ev_support = 1 # spliced_intron 6297508-6297670 (orient:-) max_ev_support = 3 scaffold_1 - intron 6297508-6297670 asmbl_347,asmbl_348,asmbl_349 scaffold_1 - retained_intron 6297508-6297670 asmbl_350 // Retained and Spliced Intron # retained_intron 6320286-6320404 (orient:-) max_ev_support = 1 # spliced_intron 6320286-6320404 (orient:-) max_ev_support = 2 scaffold_1 - intron 6320286-6320404 asmbl_355,asmbl_357 scaffold_1 - retained_intron 6320286-6320404 asmbl_356 // Retained and Spliced Intron # retained_intron 6496620-6496782 (orient:-) max_ev_support = 2 # spliced_intron 6496620-6496782 (orient:-) max_ev_support = 1 scaffold_1 - intron 6496620-6496782 asmbl_365 scaffold_1 - retained_intron 6496620-6496782 asmbl_362 // Exon Skipping and Retention # skipped_exon 6496620-6497024 (orient:-) max_ev_support = 1 # retained_exon 6496783-6496819 (orient:-) max_ev_support = 1 scaffold_1 - retained_exons 6496783-6496819 asmbl_365 scaffold_1 - intron_skips_exon 6496620-6497024 asmbl_363 // Retained and Spliced Intron # retained_intron 6576083-6576214 (orient:-) max_ev_support = 2 # spliced_intron 6576083-6576214 (orient:-) max_ev_support = 2 scaffold_1 - intron 6576083-6576214 asmbl_372,asmbl_374 scaffold_1 - retained_intron 6576083-6576214 asmbl_373 // Exon Skipping and Retention # skipped_exon 6830779-6831856 (orient:-) max_ev_support = 1 # retained_exon 6830890-6830974 (orient:-) max_ev_support = 2 scaffold_1 - retained_exons 6830890-6830974 asmbl_383 scaffold_1 - intron_skips_exon 6830779-6831856 asmbl_386 // Exon Skipping and Retention # skipped_exon 6830975-6831856 (orient:-) max_ev_support = 2 # retained_exon 6831405-6831526 (orient:-) max_ev_support = 2 scaffold_1 - retained_exons 6831405-6831526 asmbl_384 scaffold_1 - intron_skips_exon 6830975-6831856 asmbl_383 // Retained and Spliced Intron # retained_intron 6830779-6830889 (orient:-) max_ev_support = 1 # spliced_intron 6830779-6830889 (orient:-) max_ev_support = 2 scaffold_1 - intron 6830779-6830889 asmbl_383,asmbl_384 scaffold_1 - retained_intron 6830779-6830889 asmbl_385 // Exon Skipping and Retention # skipped_exon 7283528-7284758 (orient:-) max_ev_support = 2 # retained_exon 7284196-7284224 (orient:-) max_ev_support = 2 scaffold_1 - retained_exons 7284196-7284224 asmbl_423 scaffold_1 - intron_skips_exon 7283528-7284758 asmbl_424 // Retained and Spliced Intron # retained_intron 7370029-7370112 (orient:-) max_ev_support = 3 # spliced_intron 7370029-7370112 (orient:-) max_ev_support = 1 scaffold_1 - intron 7370029-7370112 asmbl_433,asmbl_434,asmbl_435 scaffold_1 - retained_intron 7370029-7370112 asmbl_431,asmbl_432 // Retained and Spliced Intron # retained_intron 7370155-7370238 (orient:-) max_ev_support = 1 # spliced_intron 7370155-7370238 (orient:-) max_ev_support = 2 scaffold_1 - intron 7370155-7370238 asmbl_432 scaffold_1 - retained_intron 7370155-7370238 asmbl_431,asmbl_433,asmbl_434,asmbl_435 // Exon Skipping and Retention # skipped_exon 7374398-7376636 (orient:-) max_ev_support = 1 # retained_exon 7376407-7376531 (orient:-) max_ev_support = 2 scaffold_1 - retained_exons 7376407-7376531 asmbl_432,asmbl_434 scaffold_1 - intron_skips_exon 7374398-7376636 asmbl_435 // Exon Skipping and Retention # skipped_exon 8631689-8634025 (orient:-) max_ev_support = 2 # retained_exon 8633609-8633664 (orient:-) max_ev_support = 2 scaffold_1 - retained_exons 8633609-8633664 asmbl_460,asmbl_463 scaffold_1 - intron_skips_exon 8631689-8634025 asmbl_459 // Retained and Spliced Intron # retained_intron 8645480-8646817 (orient:-) max_ev_support = 3 # spliced_intron 8645480-8646817 (orient:-) max_ev_support = 2 scaffold_1 - intron 8645480-8646817 asmbl_468,asmbl_469,asmbl_471 scaffold_1 - retained_intron 8645480-8646817 asmbl_466 // Retained and Spliced Intron # retained_intron 8643305-8643562 (orient:-) max_ev_support = 2 # spliced_intron 8643305-8643562 (orient:-) max_ev_support = 2 scaffold_1 - intron 8643305-8643562 asmbl_466,asmbl_468,asmbl_471,asmbl_472 scaffold_1 - retained_intron 8643305-8643562 asmbl_467,asmbl_469 // Retained and Spliced Intron # retained_intron 8643816-8644313 (orient:-) max_ev_support = 1 # spliced_intron 8643816-8644313 (orient:-) max_ev_support = 2 scaffold_1 - intron 8643816-8644313 asmbl_466,asmbl_468,asmbl_471,asmbl_472 scaffold_1 - retained_intron 8643816-8644313 asmbl_467,asmbl_469 // Retained and Spliced Intron # retained_intron 8644831-8644990 (orient:-) max_ev_support = 1 # spliced_intron 8644831-8644990 (orient:-) max_ev_support = 2 scaffold_1 - intron 8644831-8644990 asmbl_466,asmbl_468 scaffold_1 - retained_intron 8644831-8644990 asmbl_467,asmbl_469,asmbl_471,asmbl_472 // Retained and Spliced Intron # retained_intron 8645118-8645235 (orient:-) max_ev_support = 1 # spliced_intron 8645118-8645235 (orient:-) max_ev_support = 2 scaffold_1 - intron 8645118-8645235 asmbl_466,asmbl_468,asmbl_469,asmbl_471 scaffold_1 - retained_intron 8645118-8645235 asmbl_467,asmbl_472 // Retained and Spliced Intron # retained_intron 8645316-8645414 (orient:-) max_ev_support = 1 # spliced_intron 8645316-8645414 (orient:-) max_ev_support = 2 scaffold_1 - intron 8645316-8645414 asmbl_466,asmbl_468,asmbl_469,asmbl_471 scaffold_1 - retained_intron 8645316-8645414 asmbl_467,asmbl_472 // Retained and Spliced Intron # retained_intron 8651374-8651512 (orient:-) max_ev_support = 3 # spliced_intron 8651374-8651512 (orient:-) max_ev_support = 2 scaffold_1 - intron 8651374-8651512 asmbl_475 scaffold_1 - retained_intron 8651374-8651512 asmbl_473 // Retained and Spliced Intron # retained_intron 8733924-8734054 (orient:-) max_ev_support = 1 # spliced_intron 8733924-8734054 (orient:-) max_ev_support = 2 scaffold_1 - intron 8733924-8734054 asmbl_482,asmbl_484,asmbl_485 scaffold_1 - retained_intron 8733924-8734054 asmbl_483 // Retained and Spliced Intron # retained_intron 8733024-8733104 (orient:-) max_ev_support = 1 # spliced_intron 8733024-8733104 (orient:-) max_ev_support = 2 scaffold_1 - intron 8733024-8733104 asmbl_482,asmbl_483 scaffold_1 - retained_intron 8733024-8733104 asmbl_484 // Retained and Spliced Intron # retained_intron 8733191-8733283 (orient:-) max_ev_support = 1 # spliced_intron 8733191-8733283 (orient:-) max_ev_support = 2 scaffold_1 - intron 8733191-8733283 asmbl_482,asmbl_483,asmbl_484 scaffold_1 - retained_intron 8733191-8733283 asmbl_485 // Retained and Spliced Intron # retained_intron 8759445-8759617 (orient:-) max_ev_support = 2 # spliced_intron 8759445-8759617 (orient:-) max_ev_support = 1 scaffold_1 - intron 8759445-8759617 asmbl_488 scaffold_1 - retained_intron 8759445-8759617 asmbl_487,asmbl_491,asmbl_495 // Retained and Spliced Intron # retained_intron 8990419-8991134 (orient:-) max_ev_support = 2 # spliced_intron 8990419-8991134 (orient:-) max_ev_support = 1 scaffold_1 - intron 8990419-8991134 asmbl_509 scaffold_1 - retained_intron 8990419-8991134 asmbl_508 // Retained and Spliced Intron # retained_intron 9165141-9165231 (orient:-) max_ev_support = 1 # spliced_intron 9165141-9165231 (orient:-) max_ev_support = 1 scaffold_1 - intron 9165141-9165231 asmbl_515,asmbl_517,asmbl_518 scaffold_1 - retained_intron 9165141-9165231 asmbl_516 // Retained and Spliced Intron # retained_intron 9163722-9163832 (orient:-) max_ev_support = 1 # spliced_intron 9163722-9163832 (orient:-) max_ev_support = 1 scaffold_1 - intron 9163722-9163832 asmbl_515,asmbl_516,asmbl_517 scaffold_1 - retained_intron 9163722-9163832 asmbl_518 // Retained and Spliced Intron # retained_intron 9163929-9164016 (orient:-) max_ev_support = 1 # spliced_intron 9163929-9164016 (orient:-) max_ev_support = 1 scaffold_1 - intron 9163929-9164016 asmbl_515,asmbl_516,asmbl_517 scaffold_1 - retained_intron 9163929-9164016 asmbl_518 // Retained and Spliced Intron # retained_intron 9513340-9513605 (orient:-) max_ev_support = 1 # spliced_intron 9513340-9513605 (orient:-) max_ev_support = 2 scaffold_1 - intron 9513340-9513605 asmbl_535 scaffold_1 - retained_intron 9513340-9513605 asmbl_537 // Exon Skipping and Retention # skipped_exon 9515894-9516390 (orient:-) max_ev_support = 3 # retained_exon 9516030-9516099 (orient:-) max_ev_support = 2 scaffold_1 - retained_exons 9516030-9516099 asmbl_539 scaffold_1 - intron_skips_exon 9515894-9516390 asmbl_538 // Retained and Spliced Intron # retained_intron 9515894-9516029 (orient:-) max_ev_support = 2 # spliced_intron 9515894-9516029 (orient:-) max_ev_support = 2 scaffold_1 - intron 9515894-9516029 asmbl_539,asmbl_541 scaffold_1 - retained_intron 9515894-9516029 asmbl_540,asmbl_542 // Retained and Spliced Intron # retained_intron 9515894-9516390 (orient:-) max_ev_support = 2 # spliced_intron 9515894-9516390 (orient:-) max_ev_support = 3 scaffold_1 - intron 9515894-9516390 asmbl_538 scaffold_1 - retained_intron 9515894-9516390 asmbl_540 // Retained and Spliced Intron # retained_intron 9516100-9516390 (orient:-) max_ev_support = 2 # spliced_intron 9516100-9516390 (orient:-) max_ev_support = 2 scaffold_1 - intron 9516100-9516390 asmbl_539,asmbl_542 scaffold_1 - retained_intron 9516100-9516390 asmbl_540,asmbl_541 // Retained and Spliced Intron # retained_intron 9897278-9897370 (orient:-) max_ev_support = 1 # spliced_intron 9897278-9897370 (orient:-) max_ev_support = 2 scaffold_1 - intron 9897278-9897370 asmbl_561,asmbl_564 scaffold_1 - retained_intron 9897278-9897370 asmbl_563 // Exon Skipping and Retention # skipped_exon 10414454-10415687 (orient:-) max_ev_support = 2 # retained_exon 10414945-10415039 (orient:-) max_ev_support = 2 scaffold_1 - retained_exons 10414945-10415039 asmbl_583 scaffold_1 - intron_skips_exon 10414454-10415687 asmbl_585 // Retained and Spliced Intron # retained_intron 10414454-10414944 (orient:-) max_ev_support = 2 # spliced_intron 10414454-10414944 (orient:-) max_ev_support = 2 scaffold_1 - intron 10414454-10414944 asmbl_583 scaffold_1 - retained_intron 10414454-10414944 asmbl_584 // Retained and Spliced Intron # retained_intron 10460558-10460718 (orient:-) max_ev_support = 2 # spliced_intron 10460558-10460718 (orient:-) max_ev_support = 2 scaffold_1 - intron 10460558-10460718 asmbl_590 scaffold_1 - retained_intron 10460558-10460718 asmbl_589 // Exon Skipping and Retention # skipped_exon 10690372-10690977 (orient:-) max_ev_support = 2 # retained_exon 10690545-10690595 (orient:-) max_ev_support = 2 scaffold_1 - retained_exons 10690545-10690595 asmbl_596 scaffold_1 - intron_skips_exon 10690372-10690977 asmbl_595 // Retained and Spliced Intron # retained_intron 10763493-10763516 (orient:-) max_ev_support = 3 # spliced_intron 10763493-10763516 (orient:-) max_ev_support = 1 scaffold_1 - intron 10763493-10763516 asmbl_598 scaffold_1 - retained_intron 10763493-10763516 asmbl_597 // Exon Skipping and Retention # skipped_exon 11054617-11055916 (orient:-) max_ev_support = 1 # retained_exon 11055237-11055338 (orient:-) max_ev_support = 3 scaffold_1 - retained_exons 11055237-11055338 asmbl_603,asmbl_606 scaffold_1 - intron_skips_exon 11054617-11055916 asmbl_605 // Exon Skipping and Retention # skipped_exon 11056193-11056696 (orient:-) max_ev_support = 1 # retained_exon 11056412-11056528 (orient:-) max_ev_support = 3 scaffold_1 - retained_exons 11056412-11056528 asmbl_603,asmbl_605 scaffold_1 - intron_skips_exon 11056193-11056696 asmbl_606 // Retained and Spliced Intron # retained_intron 11568439-11568517 (orient:-) max_ev_support = 1 # spliced_intron 11568439-11568517 (orient:-) max_ev_support = 2 scaffold_1 - intron 11568439-11568517 asmbl_632,asmbl_633,asmbl_635,asmbl_637,asmbl_638 scaffold_1 - retained_intron 11568439-11568517 asmbl_636 // Exon Skipping and Retention # skipped_exon 11618948-11621286 (orient:-) max_ev_support = 2 # retained_exon 11620012-11620143 (orient:-) max_ev_support = 2 scaffold_1 - retained_exons 11620012-11620143 asmbl_643 scaffold_1 - intron_skips_exon 11618948-11621286 asmbl_644 // Retained and Spliced Intron # retained_intron 11626963-11627419 (orient:-) max_ev_support = 2 # spliced_intron 11626963-11627419 (orient:-) max_ev_support = 2 scaffold_1 - intron 11626963-11627419 asmbl_647,asmbl_650 scaffold_1 - retained_intron 11626963-11627419 asmbl_646,asmbl_648,asmbl_649 // Retained and Spliced Intron # retained_intron 11627447-11627548 (orient:-) max_ev_support = 2 # spliced_intron 11627447-11627548 (orient:-) max_ev_support = 1 scaffold_1 - intron 11627447-11627548 asmbl_648,asmbl_649,asmbl_650 scaffold_1 - retained_intron 11627447-11627548 asmbl_646,asmbl_647 // Retained and Spliced Intron # retained_intron 11626819-11626939 (orient:-) max_ev_support = 1 # spliced_intron 11626819-11626939 (orient:-) max_ev_support = 2 scaffold_1 - intron 11626819-11626939 asmbl_646,asmbl_647,asmbl_648,asmbl_650 scaffold_1 - retained_intron 11626819-11626939 asmbl_649 // Retained and Spliced Intron # retained_intron 11800832-11801098 (orient:-) max_ev_support = 1 # spliced_intron 11800832-11801098 (orient:-) max_ev_support = 1 scaffold_1 - intron 11800832-11801098 asmbl_672 scaffold_1 - retained_intron 11800832-11801098 asmbl_668 // Retained and Spliced Intron # retained_intron 12048626-12048713 (orient:-) max_ev_support = 2 # spliced_intron 12048626-12048713 (orient:-) max_ev_support = 1 scaffold_1 - intron 12048626-12048713 asmbl_680,asmbl_682 scaffold_1 - retained_intron 12048626-12048713 asmbl_679,asmbl_681 // Retained and Spliced Intron # retained_intron 12334369-12334524 (orient:-) max_ev_support = 2 # spliced_intron 12334369-12334524 (orient:-) max_ev_support = 1 scaffold_1 - intron 12334369-12334524 asmbl_705 scaffold_1 - retained_intron 12334369-12334524 asmbl_701,asmbl_702,asmbl_703,asmbl_704,asmbl_706 // Retained and Spliced Intron # retained_intron 12334369-12334829 (orient:-) max_ev_support = 2 # spliced_intron 12334369-12334829 (orient:-) max_ev_support = 2 scaffold_1 - intron 12334369-12334829 asmbl_707,asmbl_708,asmbl_709,asmbl_710,asmbl_714,asmbl_715,asmbl_716 scaffold_1 - retained_intron 12334369-12334829 asmbl_701,asmbl_702,asmbl_703,asmbl_704,asmbl_706 // Retained and Spliced Intron # retained_intron 12334369-12335043 (orient:-) max_ev_support = 2 # spliced_intron 12334369-12335043 (orient:-) max_ev_support = 1 scaffold_1 - intron 12334369-12335043 asmbl_711,asmbl_712,asmbl_713 scaffold_1 - retained_intron 12334369-12335043 asmbl_701,asmbl_702,asmbl_703,asmbl_704 // Retained and Spliced Intron # retained_intron 12334913-12335043 (orient:-) max_ev_support = 2 # spliced_intron 12334913-12335043 (orient:-) max_ev_support = 2 scaffold_1 - intron 12334913-12335043 asmbl_706,asmbl_707,asmbl_708,asmbl_709,asmbl_710,asmbl_714,asmbl_715,asmbl_716 scaffold_1 - retained_intron 12334913-12335043 asmbl_701,asmbl_702,asmbl_703,asmbl_704,asmbl_705 // Retained and Spliced Intron # retained_intron 12335190-12335281 (orient:-) max_ev_support = 3 # spliced_intron 12335190-12335281 (orient:-) max_ev_support = 2 scaffold_1 - intron 12335190-12335281 asmbl_706,asmbl_707,asmbl_708,asmbl_709,asmbl_710,asmbl_711,asmbl_712,asmbl_713,asmbl_714,asmbl_715,asmbl_716 scaffold_1 - retained_intron 12335190-12335281 asmbl_701,asmbl_702,asmbl_703,asmbl_704,asmbl_705 // Retained and Spliced Intron # retained_intron 12335370-12335520 (orient:-) max_ev_support = 3 # spliced_intron 12335370-12335520 (orient:-) max_ev_support = 2 scaffold_1 - intron 12335370-12335520 asmbl_706,asmbl_707,asmbl_708,asmbl_709,asmbl_711,asmbl_712,asmbl_713,asmbl_714,asmbl_715,asmbl_716 scaffold_1 - retained_intron 12335370-12335520 asmbl_701,asmbl_702,asmbl_703,asmbl_704,asmbl_705,asmbl_710 // Retained and Spliced Intron # retained_intron 12335617-12335989 (orient:-) max_ev_support = 3 # spliced_intron 12335617-12335989 (orient:-) max_ev_support = 2 scaffold_1 - intron 12335617-12335989 asmbl_706,asmbl_707,asmbl_708,asmbl_709,asmbl_710,asmbl_711,asmbl_712,asmbl_713,asmbl_714,asmbl_715,asmbl_716 scaffold_1 - retained_intron 12335617-12335989 asmbl_701,asmbl_702,asmbl_703,asmbl_704,asmbl_705 // Retained and Spliced Intron # retained_intron 12338031-12338333 (orient:-) max_ev_support = 1 # spliced_intron 12338031-12338333 (orient:-) max_ev_support = 2 scaffold_1 - intron 12338031-12338333 asmbl_702,asmbl_703,asmbl_704,asmbl_706,asmbl_707,asmbl_708,asmbl_712,asmbl_713,asmbl_714,asmbl_716 scaffold_1 - retained_intron 12338031-12338333 asmbl_701,asmbl_705,asmbl_709,asmbl_711,asmbl_715 // Retained and Spliced Intron # retained_intron 12336858-12337333 (orient:-) max_ev_support = 1 # spliced_intron 12336858-12337333 (orient:-) max_ev_support = 2 scaffold_1 - intron 12336858-12337333 asmbl_701,asmbl_702,asmbl_703,asmbl_705,asmbl_706,asmbl_707,asmbl_708,asmbl_709,asmbl_711,asmbl_713,asmbl_716 scaffold_1 - retained_intron 12336858-12337333 asmbl_704,asmbl_712,asmbl_714,asmbl_715 // Retained and Spliced Intron # retained_intron 12333296-12334265 (orient:-) max_ev_support = 4 # spliced_intron 12333296-12334265 (orient:-) max_ev_support = 2 scaffold_1 - intron 12333296-12334265 asmbl_708,asmbl_709,asmbl_714,asmbl_715,asmbl_716 scaffold_1 - retained_intron 12333296-12334265 asmbl_706,asmbl_707 // Exon Skipping and Retention # skipped_exon 12334369-12335043 (orient:-) max_ev_support = 1 # retained_exon 12334830-12334912 (orient:-) max_ev_support = 2 scaffold_1 - retained_exons 12334830-12334912 asmbl_707,asmbl_708,asmbl_709,asmbl_710,asmbl_714,asmbl_715,asmbl_716 scaffold_1 - intron_skips_exon 12334369-12335043 asmbl_711,asmbl_712,asmbl_713 // Exon Skipping and Retention # skipped_exon 12462400-12463266 (orient:-) max_ev_support = 1 # retained_exon 12462825-12462908 (orient:-) max_ev_support = 1 scaffold_1 - retained_exons 12462825-12462908 asmbl_718,asmbl_719,asmbl_722 scaffold_1 - intron_skips_exon 12462400-12463266 asmbl_720 // Exon Skipping and Retention # skipped_exon 12463351-12464743 (orient:-) max_ev_support = 1 # retained_exon 12464320-12464403 (orient:-) max_ev_support = 1 scaffold_1 - retained_exons 12464320-12464403 asmbl_718 scaffold_1 - intron_skips_exon 12463351-12464743 asmbl_719,asmbl_722 // Exon Skipping and Retention # skipped_exon 12463351-12464319 (orient:-) max_ev_support = 1 # retained_exon 12463815-12463898 (orient:-) max_ev_support = 1 scaffold_1 - retained_exons 12463815-12463898 asmbl_720 scaffold_1 - intron_skips_exon 12463351-12464319 asmbl_718 // Retained and Spliced Intron # retained_intron 12462400-12462824 (orient:-) max_ev_support = 1 # spliced_intron 12462400-12462824 (orient:-) max_ev_support = 1 scaffold_1 - intron 12462400-12462824 asmbl_718,asmbl_719,asmbl_722 scaffold_1 - retained_intron 12462400-12462824 asmbl_721 // Exon Skipping and Retention # skipped_exon 12466110-12468409 (orient:-) max_ev_support = 1 # retained_exon 12466933-12467942 (orient:-) max_ev_support = 1 scaffold_1 - retained_exons 12466933-12467016,12467382-12467465,12467859-12467942 asmbl_722 scaffold_1 - intron_skips_exon 12466110-12468409 asmbl_718,asmbl_719,asmbl_720 // Exon Skipping and Retention # skipped_exon 12545033-12545421 (orient:-) max_ev_support = 2 # retained_exon 12545144-12545270 (orient:-) max_ev_support = 1 scaffold_1 - retained_exons 12545144-12545270 asmbl_731 scaffold_1 - intron_skips_exon 12545033-12545421 asmbl_730,asmbl_732 // Retained and Spliced Intron # retained_intron 12689792-12689998 (orient:-) max_ev_support = 5 # spliced_intron 12689792-12689998 (orient:-) max_ev_support = 3 scaffold_1 - intron 12689792-12689998 asmbl_745,asmbl_747 scaffold_1 - retained_intron 12689792-12689998 asmbl_744 // Retained and Spliced Intron # retained_intron 12690151-12690339 (orient:-) max_ev_support = 3 # spliced_intron 12690151-12690339 (orient:-) max_ev_support = 3 scaffold_1 - intron 12690151-12690339 asmbl_745 scaffold_1 - retained_intron 12690151-12690339 asmbl_744,asmbl_747 // Retained and Spliced Intron # retained_intron 12745169-12745369 (orient:-) max_ev_support = 2 # spliced_intron 12745169-12745369 (orient:-) max_ev_support = 2 scaffold_1 - intron 12745169-12745369 asmbl_749,asmbl_754 scaffold_1 - retained_intron 12745169-12745369 asmbl_750 // Retained and Spliced Intron # retained_intron 12745383-12745532 (orient:-) max_ev_support = 2 # spliced_intron 12745383-12745532 (orient:-) max_ev_support = 2 scaffold_1 - intron 12745383-12745532 asmbl_749 scaffold_1 - retained_intron 12745383-12745532 asmbl_750,asmbl_754 // Exon Skipping and Retention # skipped_exon 12746690-12748390 (orient:-) max_ev_support = 2 # retained_exon 12747184-12747222 (orient:-) max_ev_support = 2 scaffold_1 - retained_exons 12747184-12747222 asmbl_752 scaffold_1 - intron_skips_exon 12746690-12748390 asmbl_751,asmbl_753 // Retained and Spliced Intron # retained_intron 12788561-12788665 (orient:-) max_ev_support = 2 # spliced_intron 12788561-12788665 (orient:-) max_ev_support = 2 scaffold_1 - intron 12788561-12788665 asmbl_763,asmbl_764,asmbl_765 scaffold_1 - retained_intron 12788561-12788665 asmbl_762 // Retained and Spliced Intron # retained_intron 12794976-12795080 (orient:-) max_ev_support = 1 # spliced_intron 12794976-12795080 (orient:-) max_ev_support = 2 scaffold_1 - intron 12794976-12795080 asmbl_767 scaffold_1 - retained_intron 12794976-12795080 asmbl_768 // Exon Skipping and Retention # skipped_exon 12814383-12814756 (orient:-) max_ev_support = 1 # retained_exon 12814554-12814639 (orient:-) max_ev_support = 2 scaffold_1 - retained_exons 12814554-12814639 asmbl_773 scaffold_1 - intron_skips_exon 12814383-12814756 asmbl_774 // Retained and Spliced Intron # retained_intron 12953093-12953198 (orient:-) max_ev_support = 2 # spliced_intron 12953093-12953198 (orient:-) max_ev_support = 2 scaffold_1 - intron 12953093-12953198 asmbl_784 scaffold_1 - retained_intron 12953093-12953198 asmbl_783,asmbl_785 // Retained and Spliced Intron # retained_intron 12953678-12953756 (orient:-) max_ev_support = 2 # spliced_intron 12953678-12953756 (orient:-) max_ev_support = 2 scaffold_1 - intron 12953678-12953756 asmbl_783 scaffold_1 - retained_intron 12953678-12953756 asmbl_784,asmbl_785 // Retained and Spliced Intron # retained_intron 12953870-12953998 (orient:-) max_ev_support = 2 # spliced_intron 12953870-12953998 (orient:-) max_ev_support = 2 scaffold_1 - intron 12953870-12953998 asmbl_783 scaffold_1 - retained_intron 12953870-12953998 asmbl_784,asmbl_785 // Retained and Spliced Intron # retained_intron 13100329-13100568 (orient:-) max_ev_support = 2 # spliced_intron 13100329-13100568 (orient:-) max_ev_support = 1 scaffold_1 - intron 13100329-13100568 asmbl_793 scaffold_1 - retained_intron 13100329-13100568 asmbl_791 // Exon Skipping and Retention # skipped_exon 13098218-13100568 (orient:-) max_ev_support = 2 # retained_exon 13100303-13100328 (orient:-) max_ev_support = 1 scaffold_1 - retained_exons 13100303-13100328 asmbl_793 scaffold_1 - intron_skips_exon 13098218-13100568 asmbl_792 // Exon Skipping and Retention # skipped_exon 13129025-13129359 (orient:-) max_ev_support = 1 # retained_exon 13129203-13129304 (orient:-) max_ev_support = 2 scaffold_1 - retained_exons 13129203-13129304 asmbl_796,asmbl_798 scaffold_1 - intron_skips_exon 13129025-13129359 asmbl_799 // Retained and Spliced Intron # retained_intron 13130586-13130726 (orient:-) max_ev_support = 1 # spliced_intron 13130586-13130726 (orient:-) max_ev_support = 2 scaffold_1 - intron 13130586-13130726 asmbl_796,asmbl_799 scaffold_1 - retained_intron 13130586-13130726 asmbl_798 // Retained and Spliced Intron # retained_intron 13433544-13433580 (orient:-) max_ev_support = 3 # spliced_intron 13433544-13433580 (orient:-) max_ev_support = 2 scaffold_1 - intron 13433544-13433580 asmbl_803 scaffold_1 - retained_intron 13433544-13433580 asmbl_802 // Retained and Spliced Intron # retained_intron 13433544-13433617 (orient:-) max_ev_support = 3 # spliced_intron 13433544-13433617 (orient:-) max_ev_support = 1 scaffold_1 - intron 13433544-13433617 asmbl_804 scaffold_1 - retained_intron 13433544-13433617 asmbl_802 // Retained and Spliced Intron # retained_intron 13537791-13537907 (orient:-) max_ev_support = 2 # spliced_intron 13537791-13537907 (orient:-) max_ev_support = 3 scaffold_1 - intron 13537791-13537907 asmbl_821,asmbl_822,asmbl_824,asmbl_825 scaffold_1 - retained_intron 13537791-13537907 asmbl_823 // Retained and Spliced Intron # retained_intron 13538442-13538687 (orient:-) max_ev_support = 1 # spliced_intron 13538442-13538687 (orient:-) max_ev_support = 3 scaffold_1 - intron 13538442-13538687 asmbl_821,asmbl_822 scaffold_1 - retained_intron 13538442-13538687 asmbl_824 // Retained and Spliced Intron # retained_intron 13537007-13537217 (orient:-) max_ev_support = 1 # spliced_intron 13537007-13537217 (orient:-) max_ev_support = 3 scaffold_1 - intron 13537007-13537217 asmbl_821,asmbl_822,asmbl_824 scaffold_1 - retained_intron 13537007-13537217 asmbl_825 // Retained and Spliced Intron # retained_intron 13537305-13537508 (orient:-) max_ev_support = 1 # spliced_intron 13537305-13537508 (orient:-) max_ev_support = 3 scaffold_1 - intron 13537305-13537508 asmbl_821,asmbl_822,asmbl_824 scaffold_1 - retained_intron 13537305-13537508 asmbl_825 // Exon Skipping and Retention # skipped_exon 13565696-13566054 (orient:-) max_ev_support = 1 # retained_exon 13565843-13565951 (orient:-) max_ev_support = 1 scaffold_1 - retained_exons 13565843-13565951 asmbl_832 scaffold_1 - intron_skips_exon 13565696-13566054 asmbl_833 // Exon Skipping and Retention # skipped_exon 13883303-13885119 (orient:-) max_ev_support = 2 # retained_exon 13884593-13884633 (orient:-) max_ev_support = 2 scaffold_1 - retained_exons 13884593-13884633 asmbl_852 scaffold_1 - intron_skips_exon 13883303-13885119 asmbl_853 // Exon Skipping and Retention # skipped_exon 13883297-13885119 (orient:-) max_ev_support = 1 # retained_exon 13884593-13884633 (orient:-) max_ev_support = 2 scaffold_1 - retained_exons 13884593-13884633 asmbl_852 scaffold_1 - intron_skips_exon 13883297-13885119 asmbl_856 // Retained and Spliced Intron # retained_intron 14189225-14189671 (orient:-) max_ev_support = 2 # spliced_intron 14189225-14189671 (orient:-) max_ev_support = 2 scaffold_1 - intron 14189225-14189671 asmbl_866,asmbl_868,asmbl_871,asmbl_872 scaffold_1 - retained_intron 14189225-14189671 asmbl_867 // Retained and Spliced Intron # retained_intron 14189912-14190481 (orient:-) max_ev_support = 2 # spliced_intron 14189912-14190481 (orient:-) max_ev_support = 2 scaffold_1 - intron 14189912-14190481 asmbl_866,asmbl_871,asmbl_872 scaffold_1 - retained_intron 14189912-14190481 asmbl_868 // Retained and Spliced Intron # retained_intron 14190668-14191031 (orient:-) max_ev_support = 1 # spliced_intron 14190668-14191031 (orient:-) max_ev_support = 2 scaffold_1 - intron 14190668-14191031 asmbl_866 scaffold_1 - retained_intron 14190668-14191031 asmbl_871,asmbl_872 // Retained and Spliced Intron # retained_intron 14191116-14191205 (orient:-) max_ev_support = 1 # spliced_intron 14191116-14191205 (orient:-) max_ev_support = 2 scaffold_1 - intron 14191116-14191205 asmbl_866,asmbl_872 scaffold_1 - retained_intron 14191116-14191205 asmbl_871 // Retained and Spliced Intron # retained_intron 14251914-14252304 (orient:-) max_ev_support = 2 # spliced_intron 14251914-14252304 (orient:-) max_ev_support = 1 scaffold_1 - intron 14251914-14252304 asmbl_877 scaffold_1 - retained_intron 14251914-14252304 asmbl_876 // Retained and Spliced Intron # retained_intron 14333858-14334027 (orient:-) max_ev_support = 2 # spliced_intron 14333858-14334027 (orient:-) max_ev_support = 2 scaffold_1 - intron 14333858-14334027 asmbl_888 scaffold_1 - retained_intron 14333858-14334027 asmbl_889,asmbl_890 // Retained and Spliced Intron # retained_intron 14334145-14334239 (orient:-) max_ev_support = 2 # spliced_intron 14334145-14334239 (orient:-) max_ev_support = 2 scaffold_1 - intron 14334145-14334239 asmbl_888,asmbl_890 scaffold_1 - retained_intron 14334145-14334239 asmbl_889 // Retained and Spliced Intron # retained_intron 14350452-14350634 (orient:-) max_ev_support = 1 # spliced_intron 14350452-14350634 (orient:-) max_ev_support = 2 scaffold_1 - intron 14350452-14350634 asmbl_893,asmbl_894,asmbl_897 scaffold_1 - retained_intron 14350452-14350634 asmbl_896 // Retained and Spliced Intron # retained_intron 14349751-14349879 (orient:-) max_ev_support = 1 # spliced_intron 14349751-14349879 (orient:-) max_ev_support = 2 scaffold_1 - intron 14349751-14349879 asmbl_893,asmbl_894,asmbl_896 scaffold_1 - retained_intron 14349751-14349879 asmbl_897 // Retained and Spliced Intron # retained_intron 14354771-14354860 (orient:-) max_ev_support = 2 # spliced_intron 14354771-14354860 (orient:-) max_ev_support = 1 scaffold_1 - intron 14354771-14354860 asmbl_902 scaffold_1 - retained_intron 14354771-14354860 asmbl_898,asmbl_899,asmbl_900,asmbl_901 // Retained and Spliced Intron # retained_intron 14354987-14355171 (orient:-) max_ev_support = 2 # spliced_intron 14354987-14355171 (orient:-) max_ev_support = 1 scaffold_1 - intron 14354987-14355171 asmbl_902 scaffold_1 - retained_intron 14354987-14355171 asmbl_898,asmbl_899,asmbl_900,asmbl_901 // Retained and Spliced Intron # retained_intron 14355333-14355698 (orient:-) max_ev_support = 2 # spliced_intron 14355333-14355698 (orient:-) max_ev_support = 1 scaffold_1 - intron 14355333-14355698 asmbl_899,asmbl_900,asmbl_901,asmbl_902 scaffold_1 - retained_intron 14355333-14355698 asmbl_898 // Retained and Spliced Intron # retained_intron 14355835-14355968 (orient:-) max_ev_support = 1 # spliced_intron 14355835-14355968 (orient:-) max_ev_support = 1 scaffold_1 - intron 14355835-14355968 asmbl_900,asmbl_902 scaffold_1 - retained_intron 14355835-14355968 asmbl_901 // Retained and Spliced Intron # retained_intron 14355835-14355988 (orient:-) max_ev_support = 1 # spliced_intron 14355835-14355988 (orient:-) max_ev_support = 1 scaffold_1 - intron 14355835-14355988 asmbl_899 scaffold_1 - retained_intron 14355835-14355988 asmbl_901 // Retained and Spliced Intron # retained_intron 14359766-14359977 (orient:-) max_ev_support = 2 # spliced_intron 14359766-14359977 (orient:-) max_ev_support = 2 scaffold_1 - intron 14359766-14359977 asmbl_904,asmbl_905,asmbl_907,asmbl_908,asmbl_909 scaffold_1 - retained_intron 14359766-14359977 asmbl_903 // Retained and Spliced Intron # retained_intron 14360102-14360228 (orient:-) max_ev_support = 2 # spliced_intron 14360102-14360228 (orient:-) max_ev_support = 2 scaffold_1 - intron 14360102-14360228 asmbl_904,asmbl_905,asmbl_907,asmbl_909 scaffold_1 - retained_intron 14360102-14360228 asmbl_903,asmbl_908 // Exon Skipping and Retention # skipped_exon 14363017-14365198 (orient:-) max_ev_support = 1 # retained_exon 14364086-14364252 (orient:-) max_ev_support = 2 scaffold_1 - retained_exons 14364086-14364252 asmbl_904 scaffold_1 - intron_skips_exon 14363017-14365198 asmbl_909 // Retained and Spliced Intron # retained_intron 14411093-14411191 (orient:-) max_ev_support = 1 # spliced_intron 14411093-14411191 (orient:-) max_ev_support = 2 scaffold_1 - intron 14411093-14411191 asmbl_913 scaffold_1 - retained_intron 14411093-14411191 asmbl_914 // Retained and Spliced Intron # retained_intron 14427728-14428466 (orient:-) max_ev_support = 2 # spliced_intron 14427728-14428466 (orient:-) max_ev_support = 2 scaffold_1 - intron 14427728-14428466 asmbl_921 scaffold_1 - retained_intron 14427728-14428466 asmbl_923 // Retained and Spliced Intron # retained_intron 14427728-14428504 (orient:-) max_ev_support = 2 # spliced_intron 14427728-14428504 (orient:-) max_ev_support = 2 scaffold_1 - intron 14427728-14428504 asmbl_922 scaffold_1 - retained_intron 14427728-14428504 asmbl_923 // Retained and Spliced Intron # retained_intron 14426870-14427019 (orient:-) max_ev_support = 2 # spliced_intron 14426870-14427019 (orient:-) max_ev_support = 3 scaffold_1 - intron 14426870-14427019 asmbl_921,asmbl_922,asmbl_923,asmbl_924 scaffold_1 - retained_intron 14426870-14427019 asmbl_925 // Retained and Spliced Intron # retained_intron 14521611-14522141 (orient:-) max_ev_support = 2 # spliced_intron 14521611-14522141 (orient:-) max_ev_support = 2 scaffold_1 - intron 14521611-14522141 asmbl_929,asmbl_930 scaffold_1 - retained_intron 14521611-14522141 asmbl_928,asmbl_931,asmbl_932 // Retained and Spliced Intron # retained_intron 14522266-14522424 (orient:-) max_ev_support = 2 # spliced_intron 14522266-14522424 (orient:-) max_ev_support = 2 scaffold_1 - intron 14522266-14522424 asmbl_929,asmbl_931 scaffold_1 - retained_intron 14522266-14522424 asmbl_928 // Retained and Spliced Intron # retained_intron 14522290-14522424 (orient:-) max_ev_support = 2 # spliced_intron 14522290-14522424 (orient:-) max_ev_support = 2 scaffold_1 - intron 14522290-14522424 asmbl_930,asmbl_932 scaffold_1 - retained_intron 14522290-14522424 asmbl_928 // Exon Skipping and Retention # skipped_exon 15306118-15306585 (orient:-) max_ev_support = 1 # retained_exon 15306266-15306424 (orient:-) max_ev_support = 2 scaffold_1 - retained_exons 15306266-15306424 asmbl_954 scaffold_1 - intron_skips_exon 15306118-15306585 asmbl_955 // Retained and Spliced Intron # retained_intron 16095601-16095685 (orient:-) max_ev_support = 3 # spliced_intron 16095601-16095685 (orient:-) max_ev_support = 1 scaffold_1 - intron 16095601-16095685 asmbl_973 scaffold_1 - retained_intron 16095601-16095685 asmbl_972 // Retained and Spliced Intron # retained_intron 16095601-16095726 (orient:-) max_ev_support = 4 # spliced_intron 16095601-16095726 (orient:-) max_ev_support = 1 scaffold_1 - intron 16095601-16095726 asmbl_976 scaffold_1 - retained_intron 16095601-16095726 asmbl_972 // Retained and Spliced Intron # retained_intron 16095601-16095749 (orient:-) max_ev_support = 4 # spliced_intron 16095601-16095749 (orient:-) max_ev_support = 2 scaffold_1 - intron 16095601-16095749 asmbl_974,asmbl_975 scaffold_1 - retained_intron 16095601-16095749 asmbl_972 // Exon Skipping and Retention # skipped_exon 16096299-16097022 (orient:-) max_ev_support = 2 # retained_exon 16096473-16096565 (orient:-) max_ev_support = 1 scaffold_1 - retained_exons 16096473-16096565 asmbl_975 scaffold_1 - intron_skips_exon 16096299-16097022 asmbl_972,asmbl_973,asmbl_974,asmbl_976 // Retained and Spliced Intron # retained_intron 16478811-16478993 (orient:-) max_ev_support = 1 # spliced_intron 16478811-16478993 (orient:-) max_ev_support = 2 scaffold_1 - intron 16478811-16478993 asmbl_989,asmbl_990,asmbl_991,asmbl_995,asmbl_996 scaffold_1 - retained_intron 16478811-16478993 asmbl_994,asmbl_997 // Retained and Spliced Intron # retained_intron 16478498-16478746 (orient:-) max_ev_support = 1 # spliced_intron 16478498-16478746 (orient:-) max_ev_support = 2 scaffold_1 - intron 16478498-16478746 asmbl_989,asmbl_990,asmbl_991,asmbl_994,asmbl_995,asmbl_996 scaffold_1 - retained_intron 16478498-16478746 asmbl_997 // Retained and Spliced Intron # retained_intron 16923881-16923994 (orient:-) max_ev_support = 1 # spliced_intron 16923881-16923994 (orient:-) max_ev_support = 1 scaffold_1 - intron 16923881-16923994 asmbl_1021 scaffold_1 - retained_intron 16923881-16923994 asmbl_1022 // Retained and Spliced Intron # retained_intron 17975385-17975557 (orient:-) max_ev_support = 2 # spliced_intron 17975385-17975557 (orient:-) max_ev_support = 1 scaffold_1 - intron 17975385-17975557 asmbl_1073 scaffold_1 - retained_intron 17975385-17975557 asmbl_1072 // Retained and Spliced Intron # retained_intron 18029822-18030007 (orient:-) max_ev_support = 1 # spliced_intron 18029822-18030007 (orient:-) max_ev_support = 1 scaffold_1 - intron 18029822-18030007 asmbl_1077 scaffold_1 - retained_intron 18029822-18030007 asmbl_1075,asmbl_1076,asmbl_1078 // Exon Skipping and Retention # skipped_exon 18028928-18029644 (orient:-) max_ev_support = 1 # retained_exon 18029187-18029281 (orient:-) max_ev_support = 1 scaffold_1 - retained_exons 18029187-18029281 asmbl_1076 scaffold_1 - intron_skips_exon 18028928-18029644 asmbl_1075 // Retained and Spliced Intron # retained_intron 18028833-18029186 (orient:-) max_ev_support = 1 # spliced_intron 18028833-18029186 (orient:-) max_ev_support = 1 scaffold_1 - intron 18028833-18029186 asmbl_1076 scaffold_1 - retained_intron 18028833-18029186 asmbl_1078 // Retained and Spliced Intron # retained_intron 18033265-18033608 (orient:-) max_ev_support = 2 # spliced_intron 18033265-18033608 (orient:-) max_ev_support = 1 scaffold_1 - intron 18033265-18033608 asmbl_1081 scaffold_1 - retained_intron 18033265-18033608 asmbl_1080 // Retained and Spliced Intron # retained_intron 18033269-18033608 (orient:-) max_ev_support = 2 # spliced_intron 18033269-18033608 (orient:-) max_ev_support = 3 scaffold_1 - intron 18033269-18033608 asmbl_1079 scaffold_1 - retained_intron 18033269-18033608 asmbl_1080 // Exon Skipping and Retention # skipped_exon 18086651-18087485 (orient:-) max_ev_support = 1 # retained_exon 18087007-18087072 (orient:-) max_ev_support = 3 scaffold_1 - retained_exons 18087007-18087072 asmbl_1087 scaffold_1 - intron_skips_exon 18086651-18087485 asmbl_1088 // Retained and Spliced Intron # retained_intron 18279633-18279766 (orient:-) max_ev_support = 1 # spliced_intron 18279633-18279766 (orient:-) max_ev_support = 2 scaffold_1 - intron 18279633-18279766 asmbl_1096 scaffold_1 - retained_intron 18279633-18279766 asmbl_1098 // Retained and Spliced Intron # retained_intron 18488075-18488185 (orient:-) max_ev_support = 2 # spliced_intron 18488075-18488185 (orient:-) max_ev_support = 1 scaffold_1 - intron 18488075-18488185 asmbl_1117 scaffold_1 - retained_intron 18488075-18488185 asmbl_1109,asmbl_1110,asmbl_1116 // Retained and Spliced Intron # retained_intron 18487756-18487955 (orient:-) max_ev_support = 2 # spliced_intron 18487756-18487955 (orient:-) max_ev_support = 2 scaffold_1 - intron 18487756-18487955 asmbl_1107,asmbl_1108,asmbl_1109,asmbl_1111,asmbl_1112,asmbl_1113,asmbl_1116,asmbl_1117 scaffold_1 - retained_intron 18487756-18487955 asmbl_1110 // Exon Skipping and Retention # skipped_exon 18485288-18486788 (orient:-) max_ev_support = 2 # retained_exon 18485992-18486046 (orient:-) max_ev_support = 1 scaffold_1 - retained_exons 18485992-18486046 asmbl_1111 scaffold_1 - intron_skips_exon 18485288-18486788 asmbl_1107,asmbl_1116 // Exon Skipping and Retention # skipped_exon 18485288-18486788 (orient:-) max_ev_support = 2 # retained_exon 18485977-18486046 (orient:-) max_ev_support = 1 scaffold_1 - retained_exons 18485977-18486046 asmbl_1112 scaffold_1 - intron_skips_exon 18485288-18486788 asmbl_1107,asmbl_1116 // Retained and Spliced Intron # retained_intron 18485288-18485976 (orient:-) max_ev_support = 1 # spliced_intron 18485288-18485976 (orient:-) max_ev_support = 1 scaffold_1 - intron 18485288-18485976 asmbl_1112 scaffold_1 - retained_intron 18485288-18485976 asmbl_1113,asmbl_1114 // Retained and Spliced Intron # retained_intron 18485288-18485991 (orient:-) max_ev_support = 1 # spliced_intron 18485288-18485991 (orient:-) max_ev_support = 1 scaffold_1 - intron 18485288-18485991 asmbl_1111,asmbl_1115 scaffold_1 - retained_intron 18485288-18485991 asmbl_1113,asmbl_1114 // Exon Skipping and Retention # skipped_exon 18521817-18524432 (orient:-) max_ev_support = 2 # retained_exon 18524286-18524340 (orient:-) max_ev_support = 2 scaffold_1 - retained_exons 18524286-18524340 asmbl_1121 scaffold_1 - intron_skips_exon 18521817-18524432 asmbl_1120 // Retained and Spliced Intron # retained_intron 18749948-18749977 (orient:-) max_ev_support = 3 # spliced_intron 18749948-18749977 (orient:-) max_ev_support = 1 scaffold_1 - intron 18749948-18749977 asmbl_1130 scaffold_1 - retained_intron 18749948-18749977 asmbl_1129 // Retained and Spliced Intron # retained_intron 18784825-18784961 (orient:-) max_ev_support = 2 # spliced_intron 18784825-18784961 (orient:-) max_ev_support = 2 scaffold_1 - intron 18784825-18784961 asmbl_1132 scaffold_1 - retained_intron 18784825-18784961 asmbl_1131 // Exon Skipping and Retention # skipped_exon 19695030-19696372 (orient:-) max_ev_support = 1 # retained_exon 19695156-19695224 (orient:-) max_ev_support = 2 scaffold_1 - retained_exons 19695156-19695224 asmbl_1153 scaffold_1 - intron_skips_exon 19695030-19696372 asmbl_1154,asmbl_1155 // Retained and Spliced Intron # retained_intron 20024322-20024343 (orient:-) max_ev_support = 3 # spliced_intron 20024322-20024343 (orient:-) max_ev_support = 1 scaffold_1 - intron 20024322-20024343 asmbl_1163 scaffold_1 - retained_intron 20024322-20024343 asmbl_1162 // Exon Skipping and Retention # skipped_exon 20134694-20135265 (orient:-) max_ev_support = 1 # retained_exon 20134840-20134859 (orient:-) max_ev_support = 1 scaffold_1 - retained_exons 20134840-20134859 asmbl_1170 scaffold_1 - intron_skips_exon 20134694-20135265 asmbl_1175 // Exon Skipping and Retention # skipped_exon 20134956-20135381 (orient:-) max_ev_support = 1 # retained_exon 20135212-20135301 (orient:-) max_ev_support = 1 scaffold_1 - retained_exons 20135212-20135301 asmbl_1170 scaffold_1 - intron_skips_exon 20134956-20135381 asmbl_1171 // Exon Skipping and Retention # skipped_exon 20134876-20135349 (orient:-) max_ev_support = 1 # retained_exon 20135212-20135301 (orient:-) max_ev_support = 1 scaffold_1 - retained_exons 20135212-20135301 asmbl_1170 scaffold_1 - intron_skips_exon 20134876-20135349 asmbl_1173 // Retained and Spliced Intron # retained_intron 20135278-20135349 (orient:-) max_ev_support = 1 # spliced_intron 20135278-20135349 (orient:-) max_ev_support = 1 scaffold_1 - intron 20135278-20135349 asmbl_1175 scaffold_1 - retained_intron 20135278-20135349 asmbl_1172,asmbl_1177 // Retained and Spliced Intron # retained_intron 20135302-20135349 (orient:-) max_ev_support = 1 # spliced_intron 20135302-20135349 (orient:-) max_ev_support = 1 scaffold_1 - intron 20135302-20135349 asmbl_1170,asmbl_1174 scaffold_1 - retained_intron 20135302-20135349 asmbl_1172,asmbl_1177 // Retained and Spliced Intron # retained_intron 20498696-20498844 (orient:-) max_ev_support = 2 # spliced_intron 20498696-20498844 (orient:-) max_ev_support = 1 scaffold_1 - intron 20498696-20498844 asmbl_1184 scaffold_1 - retained_intron 20498696-20498844 asmbl_1183 // Retained and Spliced Intron # retained_intron 20506233-20506257 (orient:-) max_ev_support = 1 # spliced_intron 20506233-20506257 (orient:-) max_ev_support = 1 scaffold_1 - intron 20506233-20506257 asmbl_1186 scaffold_1 - retained_intron 20506233-20506257 asmbl_1185 // Retained and Spliced Intron # retained_intron 20687634-20687780 (orient:-) max_ev_support = 1 # spliced_intron 20687634-20687780 (orient:-) max_ev_support = 1 scaffold_1 - intron 20687634-20687780 asmbl_1190 scaffold_1 - retained_intron 20687634-20687780 asmbl_1189 // Retained and Spliced Intron # retained_intron 20687704-20687850 (orient:-) max_ev_support = 1 # spliced_intron 20687704-20687850 (orient:-) max_ev_support = 1 scaffold_1 - intron 20687704-20687850 asmbl_1188 scaffold_1 - retained_intron 20687704-20687850 asmbl_1189 // Retained and Spliced Intron # retained_intron 20741340-20741546 (orient:-) max_ev_support = 1 # spliced_intron 20741340-20741546 (orient:-) max_ev_support = 2 scaffold_1 - intron 20741340-20741546 asmbl_1200,asmbl_1202,asmbl_1203 scaffold_1 - retained_intron 20741340-20741546 asmbl_1201 // Retained and Spliced Intron # retained_intron 20742516-20742758 (orient:-) max_ev_support = 1 # spliced_intron 20742516-20742758 (orient:-) max_ev_support = 1 scaffold_1 - intron 20742516-20742758 asmbl_1203 scaffold_1 - retained_intron 20742516-20742758 asmbl_1202 // Retained and Spliced Intron # retained_intron 21665391-21665422 (orient:-) max_ev_support = 3 # spliced_intron 21665391-21665422 (orient:-) max_ev_support = 1 scaffold_1 - intron 21665391-21665422 asmbl_1215 scaffold_1 - retained_intron 21665391-21665422 asmbl_1214 // Retained and Spliced Intron # retained_intron 22324113-22324192 (orient:-) max_ev_support = 2 # spliced_intron 22324113-22324192 (orient:-) max_ev_support = 3 scaffold_1 - intron 22324113-22324192 asmbl_1235 scaffold_1 - retained_intron 22324113-22324192 asmbl_1236 // Retained and Spliced Intron # retained_intron 103635-103805 (orient:+) max_ev_support = 1 # spliced_intron 103635-103805 (orient:+) max_ev_support = 2 scaffold_1 + intron 103635-103805 asmbl_1395,asmbl_1396,asmbl_1397,asmbl_1399 scaffold_1 + retained_intron 103635-103805 asmbl_1398 // Retained and Spliced Intron # retained_intron 169539-169855 (orient:+) max_ev_support = 2 # spliced_intron 169539-169855 (orient:+) max_ev_support = 3 scaffold_1 + intron 169539-169855 asmbl_1400 scaffold_1 + retained_intron 169539-169855 asmbl_1403,asmbl_1404 // Retained and Spliced Intron # retained_intron 170665-170776 (orient:+) max_ev_support = 2 # spliced_intron 170665-170776 (orient:+) max_ev_support = 3 scaffold_1 + intron 170665-170776 asmbl_1400 scaffold_1 + retained_intron 170665-170776 asmbl_1405 // Exon Skipping and Retention # skipped_exon 849299-849972 (orient:+) max_ev_support = 3 # retained_exon 849738-849801 (orient:+) max_ev_support = 3 scaffold_1 + retained_exons 849738-849801 asmbl_1418,asmbl_1422 scaffold_1 + intron_skips_exon 849299-849972 asmbl_1419 // Retained and Spliced Intron # retained_intron 849802-849972 (orient:+) max_ev_support = 3 # spliced_intron 849802-849972 (orient:+) max_ev_support = 3 scaffold_1 + intron 849802-849972 asmbl_1418 scaffold_1 + retained_intron 849802-849972 asmbl_1420,asmbl_1421 // Retained and Spliced Intron # retained_intron 849299-849737 (orient:+) max_ev_support = 2 # spliced_intron 849299-849737 (orient:+) max_ev_support = 3 scaffold_1 + intron 849299-849737 asmbl_1418,asmbl_1420,asmbl_1422 scaffold_1 + retained_intron 849299-849737 asmbl_1421 // Retained and Spliced Intron # retained_intron 849299-849972 (orient:+) max_ev_support = 2 # spliced_intron 849299-849972 (orient:+) max_ev_support = 3 scaffold_1 + intron 849299-849972 asmbl_1419 scaffold_1 + retained_intron 849299-849972 asmbl_1421 // Exon Skipping and Retention # skipped_exon 849299-850633 (orient:+) max_ev_support = 1 # retained_exon 849738-849801 (orient:+) max_ev_support = 3 scaffold_1 + retained_exons 849738-849801 asmbl_1418,asmbl_1422 scaffold_1 + intron_skips_exon 849299-850633 asmbl_1423 // Retained and Spliced Intron # retained_intron 854652-854820 (orient:+) max_ev_support = 3 # spliced_intron 854652-854820 (orient:+) max_ev_support = 1 scaffold_1 + intron 854652-854820 asmbl_1428 scaffold_1 + retained_intron 854652-854820 asmbl_1424,asmbl_1427,asmbl_1429,asmbl_1430 // Retained and Spliced Intron # retained_intron 854980-855087 (orient:+) max_ev_support = 3 # spliced_intron 854980-855087 (orient:+) max_ev_support = 2 scaffold_1 + intron 854980-855087 asmbl_1427,asmbl_1428,asmbl_1429,asmbl_1430 scaffold_1 + retained_intron 854980-855087 asmbl_1424 // Retained and Spliced Intron # retained_intron 855214-855406 (orient:+) max_ev_support = 3 # spliced_intron 855214-855406 (orient:+) max_ev_support = 2 scaffold_1 + intron 855214-855406 asmbl_1427,asmbl_1428,asmbl_1429 scaffold_1 + retained_intron 855214-855406 asmbl_1424,asmbl_1430 // Retained and Spliced Intron # retained_intron 855428-855520 (orient:+) max_ev_support = 3 # spliced_intron 855428-855520 (orient:+) max_ev_support = 1 scaffold_1 + intron 855428-855520 asmbl_1429 scaffold_1 + retained_intron 855428-855520 asmbl_1424,asmbl_1427,asmbl_1428,asmbl_1430 // Retained and Spliced Intron # retained_intron 854276-854519 (orient:+) max_ev_support = 2 # spliced_intron 854276-854519 (orient:+) max_ev_support = 1 scaffold_1 + intron 854276-854519 asmbl_1424,asmbl_1428,asmbl_1429,asmbl_1430 scaffold_1 + retained_intron 854276-854519 asmbl_1427 // Retained and Spliced Intron # retained_intron 922856-922976 (orient:+) max_ev_support = 2 # spliced_intron 922856-922976 (orient:+) max_ev_support = 2 scaffold_1 + intron 922856-922976 asmbl_1444 scaffold_1 + retained_intron 922856-922976 asmbl_1443 // Retained and Spliced Intron # retained_intron 952977-953543 (orient:+) max_ev_support = 2 # spliced_intron 952977-953543 (orient:+) max_ev_support = 2 scaffold_1 + intron 952977-953543 asmbl_1445 scaffold_1 + retained_intron 952977-953543 asmbl_1446 // Retained and Spliced Intron # retained_intron 1041790-1043520 (orient:+) max_ev_support = 5 # spliced_intron 1041790-1043520 (orient:+) max_ev_support = 2 scaffold_1 + intron 1041790-1043520 asmbl_1454 scaffold_1 + retained_intron 1041790-1043520 asmbl_1452 // Retained and Spliced Intron # retained_intron 1042580-1042741 (orient:+) max_ev_support = 3 # spliced_intron 1042580-1042741 (orient:+) max_ev_support = 1 scaffold_1 + intron 1042580-1042741 asmbl_1453 scaffold_1 + retained_intron 1042580-1042741 asmbl_1452 // Retained and Spliced Intron # retained_intron 1349041-1349123 (orient:+) max_ev_support = 1 # spliced_intron 1349041-1349123 (orient:+) max_ev_support = 3 scaffold_1 + intron 1349041-1349123 asmbl_1476 scaffold_1 + retained_intron 1349041-1349123 asmbl_1477 // Retained and Spliced Intron # retained_intron 1533624-1533762 (orient:+) max_ev_support = 2 # spliced_intron 1533624-1533762 (orient:+) max_ev_support = 3 scaffold_1 + intron 1533624-1533762 asmbl_1485 scaffold_1 + retained_intron 1533624-1533762 asmbl_1486 // Exon Skipping and Retention # skipped_exon 1561810-1563955 (orient:+) max_ev_support = 2 # retained_exon 1562434-1562526 (orient:+) max_ev_support = 1 scaffold_1 + retained_exons 1562434-1562526 asmbl_1492 scaffold_1 + intron_skips_exon 1561810-1563955 asmbl_1491 // Retained and Spliced Intron # retained_intron 1565206-1565368 (orient:+) max_ev_support = 1 # spliced_intron 1565206-1565368 (orient:+) max_ev_support = 2 scaffold_1 + intron 1565206-1565368 asmbl_1491,asmbl_1492,asmbl_1494 scaffold_1 + retained_intron 1565206-1565368 asmbl_1493 // Retained and Spliced Intron # retained_intron 1608805-1609003 (orient:+) max_ev_support = 2 # spliced_intron 1608805-1609003 (orient:+) max_ev_support = 2 scaffold_1 + intron 1608805-1609003 asmbl_1499 scaffold_1 + retained_intron 1608805-1609003 asmbl_1497,asmbl_1498,asmbl_1501 // Retained and Spliced Intron # retained_intron 1909884-1910238 (orient:+) max_ev_support = 3 # spliced_intron 1909884-1910238 (orient:+) max_ev_support = 2 scaffold_1 + intron 1909884-1910238 asmbl_1517,asmbl_1518 scaffold_1 + retained_intron 1909884-1910238 asmbl_1516 // Retained and Spliced Intron # retained_intron 1993732-1994147 (orient:+) max_ev_support = 2 # spliced_intron 1993732-1994147 (orient:+) max_ev_support = 2 scaffold_1 + intron 1993732-1994147 asmbl_1525,asmbl_1526,asmbl_1528 scaffold_1 + retained_intron 1993732-1994147 asmbl_1527 // Retained and Spliced Intron # retained_intron 1994334-1994743 (orient:+) max_ev_support = 1 # spliced_intron 1994334-1994743 (orient:+) max_ev_support = 2 scaffold_1 + intron 1994334-1994743 asmbl_1525,asmbl_1526 scaffold_1 + retained_intron 1994334-1994743 asmbl_1528 // Retained and Spliced Intron # retained_intron 2796391-2796537 (orient:+) max_ev_support = 2 # spliced_intron 2796391-2796537 (orient:+) max_ev_support = 2 scaffold_1 + intron 2796391-2796537 asmbl_1559 scaffold_1 + retained_intron 2796391-2796537 asmbl_1558 // Exon Skipping and Retention # skipped_exon 3285767-3287424 (orient:+) max_ev_support = 2 # retained_exon 3287205-3287337 (orient:+) max_ev_support = 2 scaffold_1 + retained_exons 3287205-3287337 asmbl_1590 scaffold_1 + intron_skips_exon 3285767-3287424 asmbl_1591 // Exon Skipping and Retention # skipped_exon 3678408-3680406 (orient:+) max_ev_support = 1 # retained_exon 3679503-3679991 (orient:+) max_ev_support = 2 scaffold_1 + retained_exons 3679503-3679629,3679854-3679991 asmbl_1625,asmbl_1626 scaffold_1 + intron_skips_exon 3678408-3680406 asmbl_1629 // Retained and Spliced Intron # retained_intron 3680316-3680406 (orient:+) max_ev_support = 3 # spliced_intron 3680316-3680406 (orient:+) max_ev_support = 2 scaffold_1 + intron 3680316-3680406 asmbl_1627 scaffold_1 + retained_intron 3680316-3680406 asmbl_1625 // Retained and Spliced Intron # retained_intron 3681459-3682104 (orient:+) max_ev_support = 3 # spliced_intron 3681459-3682104 (orient:+) max_ev_support = 1 scaffold_1 + intron 3681459-3682104 asmbl_1630 scaffold_1 + retained_intron 3681459-3682104 asmbl_1625,asmbl_1626,asmbl_1627 // Exon Skipping and Retention # skipped_exon 3679992-3680406 (orient:+) max_ev_support = 2 # retained_exon 3680249-3680315 (orient:+) max_ev_support = 2 scaffold_1 + retained_exons 3680249-3680315 asmbl_1627 scaffold_1 + intron_skips_exon 3679992-3680406 asmbl_1626 // Retained and Spliced Intron # retained_intron 3679992-3680248 (orient:+) max_ev_support = 1 # spliced_intron 3679992-3680248 (orient:+) max_ev_support = 2 scaffold_1 + intron 3679992-3680248 asmbl_1625,asmbl_1627 scaffold_1 + retained_intron 3679992-3680248 asmbl_1628 // Exon Skipping and Retention # skipped_exon 4225778-4226335 (orient:+) max_ev_support = 3 # retained_exon 4226021-4226071 (orient:+) max_ev_support = 3 scaffold_1 + retained_exons 4226021-4226071 asmbl_1641 scaffold_1 + intron_skips_exon 4225778-4226335 asmbl_1640 // Retained and Spliced Intron # retained_intron 4226072-4226335 (orient:+) max_ev_support = 2 # spliced_intron 4226072-4226335 (orient:+) max_ev_support = 3 scaffold_1 + intron 4226072-4226335 asmbl_1641,asmbl_1644 scaffold_1 + retained_intron 4226072-4226335 asmbl_1643 // Retained and Spliced Intron # retained_intron 4225778-4226020 (orient:+) max_ev_support = 1 # spliced_intron 4225778-4226020 (orient:+) max_ev_support = 3 scaffold_1 + intron 4225778-4226020 asmbl_1641 scaffold_1 + retained_intron 4225778-4226020 asmbl_1644 // Exon Skipping and Retention # skipped_exon 4237758-4239798 (orient:+) max_ev_support = 1 # retained_exon 4239039-4239168 (orient:+) max_ev_support = 2 scaffold_1 + retained_exons 4239039-4239168 asmbl_1647 scaffold_1 + intron_skips_exon 4237758-4239798 asmbl_1652,asmbl_1653,asmbl_1655 // Exon Skipping and Retention # skipped_exon 4237758-4240318 (orient:+) max_ev_support = 2 # retained_exon 4239039-4239871 (orient:+) max_ev_support = 2 scaffold_1 + retained_exons 4239039-4239168,4239799-4239871 asmbl_1647 scaffold_1 + retained_exons 4239039-4239871 asmbl_1648 scaffold_1 + intron_skips_exon 4237758-4240318 asmbl_1646,asmbl_1654 // Retained and Spliced Intron # retained_intron 4239169-4239798 (orient:+) max_ev_support = 1 # spliced_intron 4239169-4239798 (orient:+) max_ev_support = 2 scaffold_1 + intron 4239169-4239798 asmbl_1647 scaffold_1 + retained_intron 4239169-4239798 asmbl_1648 // Exon Skipping and Retention # skipped_exon 4237758-4240318 (orient:+) max_ev_support = 2 # retained_exon 4239799-4239871 (orient:+) max_ev_support = 1 scaffold_1 + retained_exons 4239799-4239871 asmbl_1652,asmbl_1653,asmbl_1655 scaffold_1 + intron_skips_exon 4237758-4240318 asmbl_1646,asmbl_1654 // Retained and Spliced Intron # retained_intron 4587875-4587986 (orient:+) max_ev_support = 2 # spliced_intron 4587875-4587986 (orient:+) max_ev_support = 2 scaffold_1 + intron 4587875-4587986 asmbl_1674,asmbl_1676 scaffold_1 + retained_intron 4587875-4587986 asmbl_1675 // Retained and Spliced Intron # retained_intron 4602131-4602216 (orient:+) max_ev_support = 2 # spliced_intron 4602131-4602216 (orient:+) max_ev_support = 2 scaffold_1 + intron 4602131-4602216 asmbl_1678 scaffold_1 + retained_intron 4602131-4602216 asmbl_1679 // Retained and Spliced Intron # retained_intron 4619268-4619989 (orient:+) max_ev_support = 2 # spliced_intron 4619268-4619989 (orient:+) max_ev_support = 1 scaffold_1 + intron 4619268-4619989 asmbl_1683 scaffold_1 + retained_intron 4619268-4619989 asmbl_1684,asmbl_1685,asmbl_1686 // Exon Skipping and Retention # skipped_exon 5136946-5137638 (orient:+) max_ev_support = 2 # retained_exon 5137095-5137142 (orient:+) max_ev_support = 1 scaffold_1 + retained_exons 5137095-5137142 asmbl_1700 scaffold_1 + intron_skips_exon 5136946-5137638 asmbl_1698 // Retained and Spliced Intron # retained_intron 5205899-5206482 (orient:+) max_ev_support = 1 # spliced_intron 5205899-5206482 (orient:+) max_ev_support = 1 scaffold_1 + intron 5205899-5206482 asmbl_1706,asmbl_1707,asmbl_1708,asmbl_1710,asmbl_1712 scaffold_1 + retained_intron 5205899-5206482 asmbl_1704,asmbl_1705,asmbl_1709,asmbl_1711 // Retained and Spliced Intron # retained_intron 5206637-5207244 (orient:+) max_ev_support = 2 # spliced_intron 5206637-5207244 (orient:+) max_ev_support = 1 scaffold_1 + intron 5206637-5207244 asmbl_1705,asmbl_1707,asmbl_1709,asmbl_1710,asmbl_1711 scaffold_1 + retained_intron 5206637-5207244 asmbl_1704 // Retained and Spliced Intron # retained_intron 5207312-5207851 (orient:+) max_ev_support = 1 # spliced_intron 5207312-5207851 (orient:+) max_ev_support = 1 scaffold_1 + intron 5207312-5207851 asmbl_1715 scaffold_1 + retained_intron 5207312-5207851 asmbl_1713,asmbl_1714,asmbl_1717 // Retained and Spliced Intron # retained_intron 5207359-5207851 (orient:+) max_ev_support = 1 # spliced_intron 5207359-5207851 (orient:+) max_ev_support = 2 scaffold_1 + intron 5207359-5207851 asmbl_1704,asmbl_1705,asmbl_1707,asmbl_1709,asmbl_1710,asmbl_1711,asmbl_1716,asmbl_1718 scaffold_1 + retained_intron 5207359-5207851 asmbl_1713,asmbl_1714,asmbl_1717 // Retained and Spliced Intron # retained_intron 5208949-5209138 (orient:+) max_ev_support = 1 # spliced_intron 5208949-5209138 (orient:+) max_ev_support = 2 scaffold_1 + intron 5208949-5209138 asmbl_1704,asmbl_1705,asmbl_1707,asmbl_1709,asmbl_1710,asmbl_1711,asmbl_1714,asmbl_1715,asmbl_1717,asmbl_1718 scaffold_1 + retained_intron 5208949-5209138 asmbl_1713,asmbl_1716 // Retained and Spliced Intron # retained_intron 5618829-5618888 (orient:+) max_ev_support = 1 # spliced_intron 5618829-5618888 (orient:+) max_ev_support = 1 scaffold_1 + intron 5618829-5618888 asmbl_1732 scaffold_1 + retained_intron 5618829-5618888 asmbl_1731,asmbl_1733 // Retained and Spliced Intron # retained_intron 5645145-5645265 (orient:+) max_ev_support = 2 # spliced_intron 5645145-5645265 (orient:+) max_ev_support = 2 scaffold_1 + intron 5645145-5645265 asmbl_1738,asmbl_1741 scaffold_1 + retained_intron 5645145-5645265 asmbl_1739,asmbl_1740,asmbl_1742 // Retained and Spliced Intron # retained_intron 5705379-5705535 (orient:+) max_ev_support = 1 # spliced_intron 5705379-5705535 (orient:+) max_ev_support = 2 scaffold_1 + intron 5705379-5705535 asmbl_1753,asmbl_1756 scaffold_1 + retained_intron 5705379-5705535 asmbl_1755,asmbl_1757 // Retained and Spliced Intron # retained_intron 5706882-5706999 (orient:+) max_ev_support = 1 # spliced_intron 5706882-5706999 (orient:+) max_ev_support = 2 scaffold_1 + intron 5706882-5706999 asmbl_1753,asmbl_1755,asmbl_1757 scaffold_1 + retained_intron 5706882-5706999 asmbl_1756 // Retained and Spliced Intron # retained_intron 5729304-5729775 (orient:+) max_ev_support = 2 # spliced_intron 5729304-5729775 (orient:+) max_ev_support = 1 scaffold_1 + intron 5729304-5729775 asmbl_1765 scaffold_1 + retained_intron 5729304-5729775 asmbl_1763,asmbl_1764 // Retained and Spliced Intron # retained_intron 5735051-5735263 (orient:+) max_ev_support = 1 # spliced_intron 5735051-5735263 (orient:+) max_ev_support = 2 scaffold_1 + intron 5735051-5735263 asmbl_1767,asmbl_1768,asmbl_1769,asmbl_1770 scaffold_1 + retained_intron 5735051-5735263 asmbl_1766 // Retained and Spliced Intron # retained_intron 5736121-5736230 (orient:+) max_ev_support = 2 # spliced_intron 5736121-5736230 (orient:+) max_ev_support = 2 scaffold_1 + intron 5736121-5736230 asmbl_1767,asmbl_1768,asmbl_1769,asmbl_1770,asmbl_1771 scaffold_1 + retained_intron 5736121-5736230 asmbl_1766 // Retained and Spliced Intron # retained_intron 5734339-5734453 (orient:+) max_ev_support = 1 # spliced_intron 5734339-5734453 (orient:+) max_ev_support = 2 scaffold_1 + intron 5734339-5734453 asmbl_1766,asmbl_1767,asmbl_1770 scaffold_1 + retained_intron 5734339-5734453 asmbl_1768,asmbl_1769 // Retained and Spliced Intron # retained_intron 5735334-5735977 (orient:+) max_ev_support = 1 # spliced_intron 5735334-5735977 (orient:+) max_ev_support = 2 scaffold_1 + intron 5735334-5735977 asmbl_1766,asmbl_1767,asmbl_1768,asmbl_1769,asmbl_1770 scaffold_1 + retained_intron 5735334-5735977 asmbl_1771 // Retained and Spliced Intron # retained_intron 5739762-5739896 (orient:+) max_ev_support = 2 # spliced_intron 5739762-5739896 (orient:+) max_ev_support = 1 scaffold_1 + intron 5739762-5739896 asmbl_1775,asmbl_1776,asmbl_1777,asmbl_1778,asmbl_1779,asmbl_1780,asmbl_1781,asmbl_1782 scaffold_1 + retained_intron 5739762-5739896 asmbl_1773 // Retained and Spliced Intron # retained_intron 5739912-5740071 (orient:+) max_ev_support = 2 # spliced_intron 5739912-5740071 (orient:+) max_ev_support = 1 scaffold_1 + intron 5739912-5740071 asmbl_1776,asmbl_1777,asmbl_1778,asmbl_1779,asmbl_1780,asmbl_1781,asmbl_1782 scaffold_1 + retained_intron 5739912-5740071 asmbl_1773,asmbl_1775 // Retained and Spliced Intron # retained_intron 5741078-5741175 (orient:+) max_ev_support = 2 # spliced_intron 5741078-5741175 (orient:+) max_ev_support = 1 scaffold_1 + intron 5741078-5741175 asmbl_1775,asmbl_1776,asmbl_1779,asmbl_1780,asmbl_1781 scaffold_1 + retained_intron 5741078-5741175 asmbl_1774 // Retained and Spliced Intron # retained_intron 5740198-5740435 (orient:+) max_ev_support = 1 # spliced_intron 5740198-5740435 (orient:+) max_ev_support = 1 scaffold_1 + intron 5740198-5740435 asmbl_1775,asmbl_1776,asmbl_1778,asmbl_1779,asmbl_1780,asmbl_1781,asmbl_1782 scaffold_1 + retained_intron 5740198-5740435 asmbl_1777 // Retained and Spliced Intron # retained_intron 5738505-5739159 (orient:+) max_ev_support = 1 # spliced_intron 5738505-5739159 (orient:+) max_ev_support = 1 scaffold_1 + intron 5738505-5739159 asmbl_1781 scaffold_1 + retained_intron 5738505-5739159 asmbl_1779,asmbl_1780,asmbl_1782 // Retained and Spliced Intron # retained_intron 5739339-5739419 (orient:+) max_ev_support = 1 # spliced_intron 5739339-5739419 (orient:+) max_ev_support = 1 scaffold_1 + intron 5739339-5739419 asmbl_1775,asmbl_1776,asmbl_1777,asmbl_1778 scaffold_1 + retained_intron 5739339-5739419 asmbl_1779,asmbl_1780,asmbl_1781,asmbl_1782 // Retained and Spliced Intron # retained_intron 5739516-5739656 (orient:+) max_ev_support = 1 # spliced_intron 5739516-5739656 (orient:+) max_ev_support = 1 scaffold_1 + intron 5739516-5739656 asmbl_1775,asmbl_1776,asmbl_1777,asmbl_1778,asmbl_1779,asmbl_1781,asmbl_1782 scaffold_1 + retained_intron 5739516-5739656 asmbl_1780 // Retained and Spliced Intron # retained_intron 5743594-5743804 (orient:+) max_ev_support = 3 # spliced_intron 5743594-5743804 (orient:+) max_ev_support = 3 scaffold_1 + intron 5743594-5743804 asmbl_1784 scaffold_1 + retained_intron 5743594-5743804 asmbl_1783 // Retained and Spliced Intron # retained_intron 5748213-5748415 (orient:+) max_ev_support = 2 # spliced_intron 5748213-5748415 (orient:+) max_ev_support = 3 scaffold_1 + intron 5748213-5748415 asmbl_1785 scaffold_1 + retained_intron 5748213-5748415 asmbl_1786,asmbl_1787 // Retained and Spliced Intron # retained_intron 5748921-5749003 (orient:+) max_ev_support = 1 # spliced_intron 5748921-5749003 (orient:+) max_ev_support = 2 scaffold_1 + intron 5748921-5749003 asmbl_1785,asmbl_1786,asmbl_1787 scaffold_1 + retained_intron 5748921-5749003 asmbl_1788 // Retained and Spliced Intron # retained_intron 5750406-5750501 (orient:+) max_ev_support = 1 # spliced_intron 5750406-5750501 (orient:+) max_ev_support = 2 scaffold_1 + intron 5750406-5750501 asmbl_1785,asmbl_1786,asmbl_1787,asmbl_1788 scaffold_1 + retained_intron 5750406-5750501 asmbl_1789 // Retained and Spliced Intron # retained_intron 5957952-5958646 (orient:+) max_ev_support = 5 # spliced_intron 5957952-5958646 (orient:+) max_ev_support = 3 scaffold_1 + intron 5957952-5958646 asmbl_1801,asmbl_1802 scaffold_1 + retained_intron 5957952-5958646 asmbl_1800 // Exon Skipping and Retention # skipped_exon 5963866-5964377 (orient:+) max_ev_support = 1 # retained_exon 5963990-5964225 (orient:+) max_ev_support = 2 scaffold_1 + retained_exons 5963990-5964052,5964146-5964225 asmbl_1805,asmbl_1807 scaffold_1 + intron_skips_exon 5963866-5964377 asmbl_1806 // Retained and Spliced Intron # retained_intron 5964053-5964145 (orient:+) max_ev_support = 2 # spliced_intron 5964053-5964145 (orient:+) max_ev_support = 2 scaffold_1 + intron 5964053-5964145 asmbl_1805,asmbl_1807 scaffold_1 + retained_intron 5964053-5964145 asmbl_1809 // Exon Skipping and Retention # skipped_exon 6015395-6016010 (orient:+) max_ev_support = 1 # retained_exon 6015714-6015786 (orient:+) max_ev_support = 2 scaffold_1 + retained_exons 6015714-6015786 asmbl_1818,asmbl_1819 scaffold_1 + intron_skips_exon 6015395-6016010 asmbl_1820 // Retained and Spliced Intron # retained_intron 6019056-6019228 (orient:+) max_ev_support = 1 # spliced_intron 6019056-6019228 (orient:+) max_ev_support = 2 scaffold_1 + intron 6019056-6019228 asmbl_1818,asmbl_1820 scaffold_1 + retained_intron 6019056-6019228 asmbl_1819 // Retained and Spliced Intron # retained_intron 6324338-6324422 (orient:+) max_ev_support = 1 # spliced_intron 6324338-6324422 (orient:+) max_ev_support = 2 scaffold_1 + intron 6324338-6324422 asmbl_1827,asmbl_1829 scaffold_1 + retained_intron 6324338-6324422 asmbl_1828 // Retained and Spliced Intron # retained_intron 6323837-6323948 (orient:+) max_ev_support = 1 # spliced_intron 6323837-6323948 (orient:+) max_ev_support = 2 scaffold_1 + intron 6323837-6323948 asmbl_1827,asmbl_1828 scaffold_1 + retained_intron 6323837-6323948 asmbl_1829 // Exon Skipping and Retention # skipped_exon 6327569-6328959 (orient:+) max_ev_support = 3 # retained_exon 6328573-6328587 (orient:+) max_ev_support = 2 scaffold_1 + retained_exons 6328573-6328587 asmbl_1831 scaffold_1 + intron_skips_exon 6327569-6328959 asmbl_1830 // Retained and Spliced Intron # retained_intron 6682486-6683305 (orient:+) max_ev_support = 2 # spliced_intron 6682486-6683305 (orient:+) max_ev_support = 3 scaffold_1 + intron 6682486-6683305 asmbl_1847 scaffold_1 + retained_intron 6682486-6683305 asmbl_1848 // Exon Skipping and Retention # skipped_exon 6752679-6753323 (orient:+) max_ev_support = 2 # retained_exon 6752807-6752940 (orient:+) max_ev_support = 2 scaffold_1 + retained_exons 6752807-6752940 asmbl_1850 scaffold_1 + intron_skips_exon 6752679-6753323 asmbl_1852 // Retained and Spliced Intron # retained_intron 6953430-6953629 (orient:+) max_ev_support = 3 # spliced_intron 6953430-6953629 (orient:+) max_ev_support = 1 scaffold_1 + intron 6953430-6953629 asmbl_1862 scaffold_1 + retained_intron 6953430-6953629 asmbl_1861 // Retained and Spliced Intron # retained_intron 6972741-6972914 (orient:+) max_ev_support = 1 # spliced_intron 6972741-6972914 (orient:+) max_ev_support = 2 scaffold_1 + intron 6972741-6972914 asmbl_1868,asmbl_1869,asmbl_1871 scaffold_1 + retained_intron 6972741-6972914 asmbl_1870 // Retained and Spliced Intron # retained_intron 6973087-6973289 (orient:+) max_ev_support = 1 # spliced_intron 6973087-6973289 (orient:+) max_ev_support = 2 scaffold_1 + intron 6973087-6973289 asmbl_1868,asmbl_1869,asmbl_1870 scaffold_1 + retained_intron 6973087-6973289 asmbl_1871 // Retained and Spliced Intron # retained_intron 7290185-7290421 (orient:+) max_ev_support = 4 # spliced_intron 7290185-7290421 (orient:+) max_ev_support = 3 scaffold_1 + intron 7290185-7290421 asmbl_1897 scaffold_1 + retained_intron 7290185-7290421 asmbl_1895,asmbl_1896 // Retained and Spliced Intron # retained_intron 7290185-7290684 (orient:+) max_ev_support = 4 # spliced_intron 7290185-7290684 (orient:+) max_ev_support = 1 scaffold_1 + intron 7290185-7290684 asmbl_1898 scaffold_1 + retained_intron 7290185-7290684 asmbl_1895,asmbl_1896 // Retained and Spliced Intron # retained_intron 7773078-7773240 (orient:+) max_ev_support = 2 # spliced_intron 7773078-7773240 (orient:+) max_ev_support = 1 scaffold_1 + intron 7773078-7773240 asmbl_1917,asmbl_1918 scaffold_1 + retained_intron 7773078-7773240 asmbl_1916 // Retained and Spliced Intron # retained_intron 7814114-7814497 (orient:+) max_ev_support = 2 # spliced_intron 7814114-7814497 (orient:+) max_ev_support = 1 scaffold_1 + intron 7814114-7814497 asmbl_1925 scaffold_1 + retained_intron 7814114-7814497 asmbl_1923 // Retained and Spliced Intron # retained_intron 7814234-7814497 (orient:+) max_ev_support = 2 # spliced_intron 7814234-7814497 (orient:+) max_ev_support = 1 scaffold_1 + intron 7814234-7814497 asmbl_1924 scaffold_1 + retained_intron 7814234-7814497 asmbl_1923 // Retained and Spliced Intron # retained_intron 8789817-8789913 (orient:+) max_ev_support = 1 # spliced_intron 8789817-8789913 (orient:+) max_ev_support = 2 scaffold_1 + intron 8789817-8789913 asmbl_1940 scaffold_1 + retained_intron 8789817-8789913 asmbl_1942 // Retained and Spliced Intron # retained_intron 9254137-9254609 (orient:+) max_ev_support = 3 # spliced_intron 9254137-9254609 (orient:+) max_ev_support = 3 scaffold_1 + intron 9254137-9254609 asmbl_1967 scaffold_1 + retained_intron 9254137-9254609 asmbl_1968,asmbl_1971 // Retained and Spliced Intron # retained_intron 9254163-9254609 (orient:+) max_ev_support = 3 # spliced_intron 9254163-9254609 (orient:+) max_ev_support = 3 scaffold_1 + intron 9254163-9254609 asmbl_1969 scaffold_1 + retained_intron 9254163-9254609 asmbl_1968,asmbl_1971 // Retained and Spliced Intron # retained_intron 9297058-9297130 (orient:+) max_ev_support = 2 # spliced_intron 9297058-9297130 (orient:+) max_ev_support = 3 scaffold_1 + intron 9297058-9297130 asmbl_1973,asmbl_1975,asmbl_1976 scaffold_1 + retained_intron 9297058-9297130 asmbl_1974 // Retained and Spliced Intron # retained_intron 9298014-9298117 (orient:+) max_ev_support = 2 # spliced_intron 9298014-9298117 (orient:+) max_ev_support = 3 scaffold_1 + intron 9298014-9298117 asmbl_1973,asmbl_1974,asmbl_1976 scaffold_1 + retained_intron 9298014-9298117 asmbl_1975 // Retained and Spliced Intron # retained_intron 9294832-9294940 (orient:+) max_ev_support = 1 # spliced_intron 9294832-9294940 (orient:+) max_ev_support = 3 scaffold_1 + intron 9294832-9294940 asmbl_1973,asmbl_1974,asmbl_1975 scaffold_1 + retained_intron 9294832-9294940 asmbl_1976 // Retained and Spliced Intron # retained_intron 9297505-9297576 (orient:+) max_ev_support = 1 # spliced_intron 9297505-9297576 (orient:+) max_ev_support = 3 scaffold_1 + intron 9297505-9297576 asmbl_1973,asmbl_1974,asmbl_1975,asmbl_1976 scaffold_1 + retained_intron 9297505-9297576 asmbl_1977 // Retained and Spliced Intron # retained_intron 9306890-9306967 (orient:+) max_ev_support = 1 # spliced_intron 9306890-9306967 (orient:+) max_ev_support = 2 scaffold_1 + intron 9306890-9306967 asmbl_1979,asmbl_1981 scaffold_1 + retained_intron 9306890-9306967 asmbl_1980 // Retained and Spliced Intron # retained_intron 9306095-9306201 (orient:+) max_ev_support = 1 # spliced_intron 9306095-9306201 (orient:+) max_ev_support = 2 scaffold_1 + intron 9306095-9306201 asmbl_1979,asmbl_1980 scaffold_1 + retained_intron 9306095-9306201 asmbl_1981 // Exon Skipping and Retention # skipped_exon 9312842-9313118 (orient:+) max_ev_support = 1 # retained_exon 9312965-9313033 (orient:+) max_ev_support = 2 scaffold_1 + retained_exons 9312965-9313033 asmbl_1982 scaffold_1 + intron_skips_exon 9312842-9313118 asmbl_1983 // Retained and Spliced Intron # retained_intron 9329051-9329388 (orient:+) max_ev_support = 1 # spliced_intron 9329051-9329388 (orient:+) max_ev_support = 1 scaffold_1 + intron 9329051-9329388 asmbl_1985,asmbl_1986 scaffold_1 + retained_intron 9329051-9329388 asmbl_1984 // Retained and Spliced Intron # retained_intron 10949081-10949745 (orient:+) max_ev_support = 2 # spliced_intron 10949081-10949745 (orient:+) max_ev_support = 2 scaffold_1 + intron 10949081-10949745 asmbl_2038,asmbl_2039,asmbl_2040,asmbl_2041 scaffold_1 + retained_intron 10949081-10949745 asmbl_2036,asmbl_2037 // Retained and Spliced Intron # retained_intron 10949081-10950931 (orient:+) max_ev_support = 2 # spliced_intron 10949081-10950931 (orient:+) max_ev_support = 2 scaffold_1 + intron 10949081-10950931 asmbl_2035 scaffold_1 + retained_intron 10949081-10950931 asmbl_2036,asmbl_2037 // Retained and Spliced Intron # retained_intron 10950202-10950350 (orient:+) max_ev_support = 2 # spliced_intron 10950202-10950350 (orient:+) max_ev_support = 1 scaffold_1 + intron 10950202-10950350 asmbl_2041 scaffold_1 + retained_intron 10950202-10950350 asmbl_2036,asmbl_2037,asmbl_2039,asmbl_2040 // Retained and Spliced Intron # retained_intron 10950202-10950931 (orient:+) max_ev_support = 2 # spliced_intron 10950202-10950931 (orient:+) max_ev_support = 2 scaffold_1 + intron 10950202-10950931 asmbl_2038 scaffold_1 + retained_intron 10950202-10950931 asmbl_2036,asmbl_2037,asmbl_2039,asmbl_2040 // Retained and Spliced Intron # retained_intron 10950971-10951077 (orient:+) max_ev_support = 2 # spliced_intron 10950971-10951077 (orient:+) max_ev_support = 2 scaffold_1 + intron 10950971-10951077 asmbl_2035,asmbl_2036,asmbl_2038,asmbl_2039,asmbl_2041 scaffold_1 + retained_intron 10950971-10951077 asmbl_2037,asmbl_2040 // Retained and Spliced Intron # retained_intron 10951165-10951333 (orient:+) max_ev_support = 2 # spliced_intron 10951165-10951333 (orient:+) max_ev_support = 2 scaffold_1 + intron 10951165-10951333 asmbl_2035,asmbl_2036,asmbl_2038,asmbl_2039,asmbl_2041 scaffold_1 + retained_intron 10951165-10951333 asmbl_2037,asmbl_2040 // Exon Skipping and Retention # skipped_exon 10949081-10950931 (orient:+) max_ev_support = 2 # retained_exon 10949746-10950201 (orient:+) max_ev_support = 2 scaffold_1 + retained_exons 10949746-10950201 asmbl_2038,asmbl_2041 scaffold_1 + intron_skips_exon 10949081-10950931 asmbl_2035 // Retained and Spliced Intron # retained_intron 11066267-11066373 (orient:+) max_ev_support = 2 # spliced_intron 11066267-11066373 (orient:+) max_ev_support = 3 scaffold_1 + intron 11066267-11066373 asmbl_2052 scaffold_1 + retained_intron 11066267-11066373 asmbl_2053 // Retained and Spliced Intron # retained_intron 11068679-11068764 (orient:+) max_ev_support = 3 # spliced_intron 11068679-11068764 (orient:+) max_ev_support = 1 scaffold_1 + intron 11068679-11068764 asmbl_2057 scaffold_1 + retained_intron 11068679-11068764 asmbl_2055 // Exon Skipping and Retention # skipped_exon 11173731-11174990 (orient:+) max_ev_support = 1 # retained_exon 11174137-11174210 (orient:+) max_ev_support = 2 scaffold_1 + retained_exons 11174137-11174210 asmbl_2078 scaffold_1 + intron_skips_exon 11173731-11174990 asmbl_2082,asmbl_2083 // Exon Skipping and Retention # skipped_exon 11175075-11175728 (orient:+) max_ev_support = 1 # retained_exon 11175248-11175308 (orient:+) max_ev_support = 2 scaffold_1 + retained_exons 11175248-11175308 asmbl_2078,asmbl_2079,asmbl_2080,asmbl_2081,asmbl_2082,asmbl_2086 scaffold_1 + intron_skips_exon 11175075-11175728 asmbl_2084 // Retained and Spliced Intron # retained_intron 11173731-11174136 (orient:+) max_ev_support = 2 # spliced_intron 11173731-11174136 (orient:+) max_ev_support = 2 scaffold_1 + intron 11173731-11174136 asmbl_2078,asmbl_2080 scaffold_1 + retained_intron 11173731-11174136 asmbl_2079,asmbl_2081,asmbl_2084,asmbl_2086 // Retained and Spliced Intron # retained_intron 11173731-11174990 (orient:+) max_ev_support = 2 # spliced_intron 11173731-11174990 (orient:+) max_ev_support = 1 scaffold_1 + intron 11173731-11174990 asmbl_2082,asmbl_2083 scaffold_1 + retained_intron 11173731-11174990 asmbl_2079,asmbl_2084,asmbl_2086 // Retained and Spliced Intron # retained_intron 11174211-11174990 (orient:+) max_ev_support = 2 # spliced_intron 11174211-11174990 (orient:+) max_ev_support = 2 scaffold_1 + intron 11174211-11174990 asmbl_2078,asmbl_2081 scaffold_1 + retained_intron 11174211-11174990 asmbl_2079,asmbl_2080,asmbl_2084,asmbl_2086 // Retained and Spliced Intron # retained_intron 11269937-11270054 (orient:+) max_ev_support = 1 # spliced_intron 11269937-11270054 (orient:+) max_ev_support = 1 scaffold_1 + intron 11269937-11270054 asmbl_2092 scaffold_1 + retained_intron 11269937-11270054 asmbl_2093 // Retained and Spliced Intron # retained_intron 11269947-11270054 (orient:+) max_ev_support = 1 # spliced_intron 11269947-11270054 (orient:+) max_ev_support = 3 scaffold_1 + intron 11269947-11270054 asmbl_2091 scaffold_1 + retained_intron 11269947-11270054 asmbl_2093 // Retained and Spliced Intron # retained_intron 11395793-11396048 (orient:+) max_ev_support = 1 # spliced_intron 11395793-11396048 (orient:+) max_ev_support = 2 scaffold_1 + intron 11395793-11396048 asmbl_2096 scaffold_1 + retained_intron 11395793-11396048 asmbl_2094,asmbl_2097 // Retained and Spliced Intron # retained_intron 11396225-11396399 (orient:+) max_ev_support = 1 # spliced_intron 11396225-11396399 (orient:+) max_ev_support = 2 scaffold_1 + intron 11396225-11396399 asmbl_2096 scaffold_1 + retained_intron 11396225-11396399 asmbl_2094,asmbl_2097 // Retained and Spliced Intron # retained_intron 11408932-11409031 (orient:+) max_ev_support = 2 # spliced_intron 11408932-11409031 (orient:+) max_ev_support = 3 scaffold_1 + intron 11408932-11409031 asmbl_2098 scaffold_1 + retained_intron 11408932-11409031 asmbl_2099 // Retained and Spliced Intron # retained_intron 11657286-11657388 (orient:+) max_ev_support = 1 # spliced_intron 11657286-11657388 (orient:+) max_ev_support = 2 scaffold_1 + intron 11657286-11657388 asmbl_2119,asmbl_2120 scaffold_1 + retained_intron 11657286-11657388 asmbl_2121 // Retained and Spliced Intron # retained_intron 11662174-11662307 (orient:+) max_ev_support = 1 # spliced_intron 11662174-11662307 (orient:+) max_ev_support = 1 scaffold_1 + intron 11662174-11662307 asmbl_2124 scaffold_1 + retained_intron 11662174-11662307 asmbl_2123 // Retained and Spliced Intron # retained_intron 11678500-11678600 (orient:+) max_ev_support = 1 # spliced_intron 11678500-11678600 (orient:+) max_ev_support = 1 scaffold_1 + intron 11678500-11678600 asmbl_2127 scaffold_1 + retained_intron 11678500-11678600 asmbl_2128 // Retained and Spliced Intron # retained_intron 11687601-11687763 (orient:+) max_ev_support = 2 # spliced_intron 11687601-11687763 (orient:+) max_ev_support = 3 scaffold_1 + intron 11687601-11687763 asmbl_2131 scaffold_1 + retained_intron 11687601-11687763 asmbl_2132 // Exon Skipping and Retention # skipped_exon 11745095-11746185 (orient:+) max_ev_support = 2 # retained_exon 11745463-11745630 (orient:+) max_ev_support = 2 scaffold_1 + retained_exons 11745463-11745630 asmbl_2140 scaffold_1 + intron_skips_exon 11745095-11746185 asmbl_2141 // Retained and Spliced Intron # retained_intron 11769504-11769614 (orient:+) max_ev_support = 1 # spliced_intron 11769504-11769614 (orient:+) max_ev_support = 2 scaffold_1 + intron 11769504-11769614 asmbl_2146,asmbl_2147,asmbl_2148 scaffold_1 + retained_intron 11769504-11769614 asmbl_2149 // Exon Skipping and Retention # skipped_exon 11821382-11822845 (orient:+) max_ev_support = 3 # retained_exon 11821553-11821589 (orient:+) max_ev_support = 3 scaffold_1 + retained_exons 11821553-11821589 asmbl_2153 scaffold_1 + intron_skips_exon 11821382-11822845 asmbl_2154 // Retained and Spliced Intron # retained_intron 11895149-11895360 (orient:+) max_ev_support = 2 # spliced_intron 11895149-11895360 (orient:+) max_ev_support = 3 scaffold_1 + intron 11895149-11895360 asmbl_2161 scaffold_1 + retained_intron 11895149-11895360 asmbl_2162 // Exon Skipping and Retention # skipped_exon 11911574-11912158 (orient:+) max_ev_support = 2 # retained_exon 11911794-11911928 (orient:+) max_ev_support = 2 scaffold_1 + retained_exons 11911794-11911928 asmbl_2166 scaffold_1 + intron_skips_exon 11911574-11912158 asmbl_2165 // Retained and Spliced Intron # retained_intron 12407759-12407879 (orient:+) max_ev_support = 5 # spliced_intron 12407759-12407879 (orient:+) max_ev_support = 3 scaffold_1 + intron 12407759-12407879 asmbl_2209 scaffold_1 + retained_intron 12407759-12407879 asmbl_2208,asmbl_2210 // Retained and Spliced Intron # retained_intron 12407161-12407709 (orient:+) max_ev_support = 2 # spliced_intron 12407161-12407709 (orient:+) max_ev_support = 5 scaffold_1 + intron 12407161-12407709 asmbl_2208,asmbl_2209 scaffold_1 + retained_intron 12407161-12407709 asmbl_2210 // Retained and Spliced Intron # retained_intron 12410452-12410980 (orient:+) max_ev_support = 2 # spliced_intron 12410452-12410980 (orient:+) max_ev_support = 3 scaffold_1 + intron 12410452-12410980 asmbl_2211 scaffold_1 + retained_intron 12410452-12410980 asmbl_2212 // Retained and Spliced Intron # retained_intron 12410452-12410983 (orient:+) max_ev_support = 2 # spliced_intron 12410452-12410983 (orient:+) max_ev_support = 1 scaffold_1 + intron 12410452-12410983 asmbl_2213 scaffold_1 + retained_intron 12410452-12410983 asmbl_2212 // Retained and Spliced Intron # retained_intron 12422430-12422995 (orient:+) max_ev_support = 5 # spliced_intron 12422430-12422995 (orient:+) max_ev_support = 1 scaffold_1 + intron 12422430-12422995 asmbl_2217 scaffold_1 + retained_intron 12422430-12422995 asmbl_2216 // Exon Skipping and Retention # skipped_exon 12448352-12449057 (orient:+) max_ev_support = 3 # retained_exon 12448483-12448552 (orient:+) max_ev_support = 3 scaffold_1 + retained_exons 12448483-12448552 asmbl_2218,asmbl_2220 scaffold_1 + intron_skips_exon 12448352-12449057 asmbl_2219 // Exon Skipping and Retention # skipped_exon 12448352-12450376 (orient:+) max_ev_support = 2 # retained_exon 12448483-12448552 (orient:+) max_ev_support = 3 scaffold_1 + retained_exons 12448483-12448552 asmbl_2218,asmbl_2220 scaffold_1 + intron_skips_exon 12448352-12450376 asmbl_2221 // Retained and Spliced Intron # retained_intron 12450440-12450558 (orient:+) max_ev_support = 2 # spliced_intron 12450440-12450558 (orient:+) max_ev_support = 3 scaffold_1 + intron 12450440-12450558 asmbl_2218,asmbl_2220,asmbl_2221 scaffold_1 + retained_intron 12450440-12450558 asmbl_2223 // Retained and Spliced Intron # retained_intron 12450440-12450569 (orient:+) max_ev_support = 2 # spliced_intron 12450440-12450569 (orient:+) max_ev_support = 1 scaffold_1 + intron 12450440-12450569 asmbl_2219 scaffold_1 + retained_intron 12450440-12450569 asmbl_2223 // Retained and Spliced Intron # retained_intron 12453045-12453262 (orient:+) max_ev_support = 1 # spliced_intron 12453045-12453262 (orient:+) max_ev_support = 2 scaffold_1 + intron 12453045-12453262 asmbl_2224 scaffold_1 + retained_intron 12453045-12453262 asmbl_2225,asmbl_2226 // Retained and Spliced Intron # retained_intron 12453468-12453687 (orient:+) max_ev_support = 1 # spliced_intron 12453468-12453687 (orient:+) max_ev_support = 2 scaffold_1 + intron 12453468-12453687 asmbl_2224,asmbl_2225 scaffold_1 + retained_intron 12453468-12453687 asmbl_2226 // Retained and Spliced Intron # retained_intron 12564359-12564465 (orient:+) max_ev_support = 1 # spliced_intron 12564359-12564465 (orient:+) max_ev_support = 2 scaffold_1 + intron 12564359-12564465 asmbl_2233 scaffold_1 + retained_intron 12564359-12564465 asmbl_2234 // Retained and Spliced Intron # retained_intron 12683677-12684002 (orient:+) max_ev_support = 2 # spliced_intron 12683677-12684002 (orient:+) max_ev_support = 2 scaffold_1 + intron 12683677-12684002 asmbl_2245,asmbl_2248 scaffold_1 + retained_intron 12683677-12684002 asmbl_2246,asmbl_2247 // Retained and Spliced Intron # retained_intron 12683507-12683637 (orient:+) max_ev_support = 1 # spliced_intron 12683507-12683637 (orient:+) max_ev_support = 2 scaffold_1 + intron 12683507-12683637 asmbl_2245,asmbl_2246 scaffold_1 + retained_intron 12683507-12683637 asmbl_2247 // Retained and Spliced Intron # retained_intron 12683507-12683640 (orient:+) max_ev_support = 1 # spliced_intron 12683507-12683640 (orient:+) max_ev_support = 1 scaffold_1 + intron 12683507-12683640 asmbl_2248 scaffold_1 + retained_intron 12683507-12683640 asmbl_2247 // Retained and Spliced Intron # retained_intron 12754530-12756067 (orient:+) max_ev_support = 3 # spliced_intron 12754530-12756067 (orient:+) max_ev_support = 2 scaffold_1 + intron 12754530-12756067 asmbl_2253 scaffold_1 + retained_intron 12754530-12756067 asmbl_2252 // Retained and Spliced Intron # retained_intron 12754534-12756067 (orient:+) max_ev_support = 3 # spliced_intron 12754534-12756067 (orient:+) max_ev_support = 3 scaffold_1 + intron 12754534-12756067 asmbl_2251 scaffold_1 + retained_intron 12754534-12756067 asmbl_2252 // Retained and Spliced Intron # retained_intron 12916451-12916553 (orient:+) max_ev_support = 1 # spliced_intron 12916451-12916553 (orient:+) max_ev_support = 2 scaffold_1 + intron 12916451-12916553 asmbl_2272,asmbl_2275 scaffold_1 + retained_intron 12916451-12916553 asmbl_2273,asmbl_2274 // Retained and Spliced Intron # retained_intron 12916164-12916271 (orient:+) max_ev_support = 1 # spliced_intron 12916164-12916271 (orient:+) max_ev_support = 2 scaffold_1 + intron 12916164-12916271 asmbl_2272,asmbl_2273,asmbl_2274 scaffold_1 + retained_intron 12916164-12916271 asmbl_2275 // Exon Skipping and Retention # skipped_exon 12977016-12978534 (orient:+) max_ev_support = 1 # retained_exon 12978049-12978105 (orient:+) max_ev_support = 2 scaffold_1 + retained_exons 12978049-12978105 asmbl_2287,asmbl_2292 scaffold_1 + intron_skips_exon 12977016-12978534 asmbl_2290 // Retained and Spliced Intron # retained_intron 13030601-13030736 (orient:+) max_ev_support = 2 # spliced_intron 13030601-13030736 (orient:+) max_ev_support = 1 scaffold_1 + intron 13030601-13030736 asmbl_2298 scaffold_1 + retained_intron 13030601-13030736 asmbl_2297 // Exon Skipping and Retention # skipped_exon 13634564-13635831 (orient:+) max_ev_support = 2 # retained_exon 13634836-13634919 (orient:+) max_ev_support = 1 scaffold_1 + retained_exons 13634836-13634919 asmbl_2312 scaffold_1 + intron_skips_exon 13634564-13635831 asmbl_2311 // Retained and Spliced Intron # retained_intron 13890935-13891127 (orient:+) max_ev_support = 2 # spliced_intron 13890935-13891127 (orient:+) max_ev_support = 2 scaffold_1 + intron 13890935-13891127 asmbl_2320,asmbl_2322,asmbl_2326,asmbl_2327 scaffold_1 + retained_intron 13890935-13891127 asmbl_2321,asmbl_2325 // Retained and Spliced Intron # retained_intron 14182552-14182705 (orient:+) max_ev_support = 1 # spliced_intron 14182552-14182705 (orient:+) max_ev_support = 2 scaffold_1 + intron 14182552-14182705 asmbl_2335,asmbl_2337 scaffold_1 + retained_intron 14182552-14182705 asmbl_2336 // Retained and Spliced Intron # retained_intron 14181858-14181932 (orient:+) max_ev_support = 1 # spliced_intron 14181858-14181932 (orient:+) max_ev_support = 2 scaffold_1 + intron 14181858-14181932 asmbl_2335,asmbl_2336,asmbl_2337 scaffold_1 + retained_intron 14181858-14181932 asmbl_2338 // Retained and Spliced Intron # retained_intron 14200941-14201384 (orient:+) max_ev_support = 2 # spliced_intron 14200941-14201384 (orient:+) max_ev_support = 2 scaffold_1 + intron 14200941-14201384 asmbl_2341,asmbl_2343,asmbl_2345 scaffold_1 + retained_intron 14200941-14201384 asmbl_2342,asmbl_2347 // Exon Skipping and Retention # skipped_exon 14200941-14202390 (orient:+) max_ev_support = 3 # retained_exon 14201385-14201845 (orient:+) max_ev_support = 2 scaffold_1 + retained_exons 14201385-14201845 asmbl_2345 scaffold_1 + intron_skips_exon 14200941-14202390 asmbl_2344,asmbl_2348 // Retained and Spliced Intron # retained_intron 14202631-14202724 (orient:+) max_ev_support = 2 # spliced_intron 14202631-14202724 (orient:+) max_ev_support = 3 scaffold_1 + intron 14202631-14202724 asmbl_2344,asmbl_2345,asmbl_2346,asmbl_2347 scaffold_1 + retained_intron 14202631-14202724 asmbl_2348 // Retained and Spliced Intron # retained_intron 14216887-14216983 (orient:+) max_ev_support = 2 # spliced_intron 14216887-14216983 (orient:+) max_ev_support = 1 scaffold_1 + intron 14216887-14216983 asmbl_2354 scaffold_1 + retained_intron 14216887-14216983 asmbl_2353,asmbl_2355 // Retained and Spliced Intron # retained_intron 14274324-14274482 (orient:+) max_ev_support = 2 # spliced_intron 14274324-14274482 (orient:+) max_ev_support = 2 scaffold_1 + intron 14274324-14274482 asmbl_2363 scaffold_1 + retained_intron 14274324-14274482 asmbl_2364,asmbl_2369 // Retained and Spliced Intron # retained_intron 14276749-14276836 (orient:+) max_ev_support = 2 # spliced_intron 14276749-14276836 (orient:+) max_ev_support = 3 scaffold_1 + intron 14276749-14276836 asmbl_2363,asmbl_2364,asmbl_2366,asmbl_2368 scaffold_1 + retained_intron 14276749-14276836 asmbl_2365 // Retained and Spliced Intron # retained_intron 14277132-14277229 (orient:+) max_ev_support = 2 # spliced_intron 14277132-14277229 (orient:+) max_ev_support = 3 scaffold_1 + intron 14277132-14277229 asmbl_2363,asmbl_2364,asmbl_2368 scaffold_1 + retained_intron 14277132-14277229 asmbl_2366 // Retained and Spliced Intron # retained_intron 14273795-14273994 (orient:+) max_ev_support = 1 # spliced_intron 14273795-14273994 (orient:+) max_ev_support = 2 scaffold_1 + intron 14273795-14273994 asmbl_2363,asmbl_2364 scaffold_1 + retained_intron 14273795-14273994 asmbl_2369 // Retained and Spliced Intron # retained_intron 14274143-14274240 (orient:+) max_ev_support = 1 # spliced_intron 14274143-14274240 (orient:+) max_ev_support = 2 scaffold_1 + intron 14274143-14274240 asmbl_2363,asmbl_2364 scaffold_1 + retained_intron 14274143-14274240 asmbl_2369 // Retained and Spliced Intron # retained_intron 14305743-14305929 (orient:+) max_ev_support = 2 # spliced_intron 14305743-14305929 (orient:+) max_ev_support = 2 scaffold_1 + intron 14305743-14305929 asmbl_2376 scaffold_1 + retained_intron 14305743-14305929 asmbl_2377 // Retained and Spliced Intron # retained_intron 14304985-14305075 (orient:+) max_ev_support = 1 # spliced_intron 14304985-14305075 (orient:+) max_ev_support = 2 scaffold_1 + intron 14304985-14305075 asmbl_2376 scaffold_1 + retained_intron 14304985-14305075 asmbl_2378 // Retained and Spliced Intron # retained_intron 14305214-14305639 (orient:+) max_ev_support = 1 # spliced_intron 14305214-14305639 (orient:+) max_ev_support = 2 scaffold_1 + intron 14305214-14305639 asmbl_2376,asmbl_2377 scaffold_1 + retained_intron 14305214-14305639 asmbl_2378 // Retained and Spliced Intron # retained_intron 14320593-14320863 (orient:+) max_ev_support = 2 # spliced_intron 14320593-14320863 (orient:+) max_ev_support = 1 scaffold_1 + intron 14320593-14320863 asmbl_2382 scaffold_1 + retained_intron 14320593-14320863 asmbl_2380,asmbl_2383 // Exon Skipping and Retention # skipped_exon 14320593-14321243 (orient:+) max_ev_support = 2 # retained_exon 14320864-14320879 (orient:+) max_ev_support = 1 scaffold_1 + retained_exons 14320864-14320879 asmbl_2382 scaffold_1 + intron_skips_exon 14320593-14321243 asmbl_2379,asmbl_2381 // Retained and Spliced Intron # retained_intron 14320593-14321243 (orient:+) max_ev_support = 1 # spliced_intron 14320593-14321243 (orient:+) max_ev_support = 2 scaffold_1 + intron 14320593-14321243 asmbl_2379,asmbl_2381 scaffold_1 + retained_intron 14320593-14321243 asmbl_2383 // Retained and Spliced Intron # retained_intron 14320880-14321243 (orient:+) max_ev_support = 1 # spliced_intron 14320880-14321243 (orient:+) max_ev_support = 1 scaffold_1 + intron 14320880-14321243 asmbl_2382 scaffold_1 + retained_intron 14320880-14321243 asmbl_2383 // Retained and Spliced Intron # retained_intron 14320893-14321243 (orient:+) max_ev_support = 1 # spliced_intron 14320893-14321243 (orient:+) max_ev_support = 2 scaffold_1 + intron 14320893-14321243 asmbl_2380 scaffold_1 + retained_intron 14320893-14321243 asmbl_2383 // Retained and Spliced Intron # retained_intron 14357027-14357107 (orient:+) max_ev_support = 1 # spliced_intron 14357027-14357107 (orient:+) max_ev_support = 2 scaffold_1 + intron 14357027-14357107 asmbl_2387,asmbl_2388 scaffold_1 + retained_intron 14357027-14357107 asmbl_2389 // Retained and Spliced Intron # retained_intron 14375886-14375983 (orient:+) max_ev_support = 2 # spliced_intron 14375886-14375983 (orient:+) max_ev_support = 2 scaffold_1 + intron 14375886-14375983 asmbl_2390 scaffold_1 + retained_intron 14375886-14375983 asmbl_2391 // Exon Skipping and Retention # skipped_exon 14964792-14965935 (orient:+) max_ev_support = 1 # retained_exon 14965422-14965493 (orient:+) max_ev_support = 2 scaffold_1 + retained_exons 14965422-14965493 asmbl_2416 scaffold_1 + intron_skips_exon 14964792-14965935 asmbl_2418 // Exon Skipping and Retention # skipped_exon 14962555-14965421 (orient:+) max_ev_support = 2 # retained_exon 14964720-14964791 (orient:+) max_ev_support = 1 scaffold_1 + retained_exons 14964720-14964791 asmbl_2418 scaffold_1 + intron_skips_exon 14962555-14965421 asmbl_2416 // Exon Skipping and Retention # skipped_exon 15279778-15281136 (orient:+) max_ev_support = 1 # retained_exon 15279892-15280037 (orient:+) max_ev_support = 1 scaffold_1 + retained_exons 15279892-15280037 asmbl_2437 scaffold_1 + intron_skips_exon 15279778-15281136 asmbl_2439 // Exon Skipping and Retention # skipped_exon 15280374-15281792 (orient:+) max_ev_support = 2 # retained_exon 15281399-15281618 (orient:+) max_ev_support = 1 scaffold_1 + retained_exons 15281399-15281618 asmbl_2437 scaffold_1 + intron_skips_exon 15280374-15281792 asmbl_2438 // Exon Skipping and Retention # skipped_exon 15280038-15281398 (orient:+) max_ev_support = 1 # retained_exon 15280154-15280373 (orient:+) max_ev_support = 2 scaffold_1 + retained_exons 15280154-15280373 asmbl_2438 scaffold_1 + intron_skips_exon 15280038-15281398 asmbl_2437 // Retained and Spliced Intron # retained_intron 15303957-15304040 (orient:+) max_ev_support = 2 # spliced_intron 15303957-15304040 (orient:+) max_ev_support = 3 scaffold_1 + intron 15303957-15304040 asmbl_2440 scaffold_1 + retained_intron 15303957-15304040 asmbl_2441 // Retained and Spliced Intron # retained_intron 15880705-15881317 (orient:+) max_ev_support = 2 # spliced_intron 15880705-15881317 (orient:+) max_ev_support = 2 scaffold_1 + intron 15880705-15881317 asmbl_2451 scaffold_1 + retained_intron 15880705-15881317 asmbl_2452 // Retained and Spliced Intron # retained_intron 15888312-15889037 (orient:+) max_ev_support = 2 # spliced_intron 15888312-15889037 (orient:+) max_ev_support = 5 scaffold_1 + intron 15888312-15889037 asmbl_2454 scaffold_1 + retained_intron 15888312-15889037 asmbl_2456 // Retained and Spliced Intron # retained_intron 15888367-15889037 (orient:+) max_ev_support = 2 # spliced_intron 15888367-15889037 (orient:+) max_ev_support = 2 scaffold_1 + intron 15888367-15889037 asmbl_2455 scaffold_1 + retained_intron 15888367-15889037 asmbl_2456 // Retained and Spliced Intron # retained_intron 15888475-15889037 (orient:+) max_ev_support = 2 # spliced_intron 15888475-15889037 (orient:+) max_ev_support = 1 scaffold_1 + intron 15888475-15889037 asmbl_2457 scaffold_1 + retained_intron 15888475-15889037 asmbl_2456 // Retained and Spliced Intron # retained_intron 16722860-16722887 (orient:+) max_ev_support = 1 # spliced_intron 16722860-16722887 (orient:+) max_ev_support = 1 scaffold_1 + intron 16722860-16722887 asmbl_2500 scaffold_1 + retained_intron 16722860-16722887 asmbl_2499 // Retained and Spliced Intron # retained_intron 16800305-16801968 (orient:+) max_ev_support = 2 # spliced_intron 16800305-16801968 (orient:+) max_ev_support = 1 scaffold_1 + intron 16800305-16801968 asmbl_2507 scaffold_1 + retained_intron 16800305-16801968 asmbl_2506 // Retained and Spliced Intron # retained_intron 17725231-17725595 (orient:+) max_ev_support = 2 # spliced_intron 17725231-17725595 (orient:+) max_ev_support = 3 scaffold_1 + intron 17725231-17725595 asmbl_2528 scaffold_1 + retained_intron 17725231-17725595 asmbl_2529,asmbl_2530,asmbl_2531 // Retained and Spliced Intron # retained_intron 17724961-17725166 (orient:+) max_ev_support = 2 # spliced_intron 17724961-17725166 (orient:+) max_ev_support = 3 scaffold_1 + intron 17724961-17725166 asmbl_2528,asmbl_2529,asmbl_2531 scaffold_1 + retained_intron 17724961-17725166 asmbl_2530 // Retained and Spliced Intron # retained_intron 17725702-17726002 (orient:+) max_ev_support = 1 # spliced_intron 17725702-17726002 (orient:+) max_ev_support = 3 scaffold_1 + intron 17725702-17726002 asmbl_2528,asmbl_2529,asmbl_2530 scaffold_1 + retained_intron 17725702-17726002 asmbl_2531 // Retained and Spliced Intron # retained_intron 17729072-17729199 (orient:+) max_ev_support = 1 # spliced_intron 17729072-17729199 (orient:+) max_ev_support = 1 scaffold_1 + intron 17729072-17729199 asmbl_2534 scaffold_1 + retained_intron 17729072-17729199 asmbl_2533 // Retained and Spliced Intron # retained_intron 17729078-17729199 (orient:+) max_ev_support = 1 # spliced_intron 17729078-17729199 (orient:+) max_ev_support = 2 scaffold_1 + intron 17729078-17729199 asmbl_2532 scaffold_1 + retained_intron 17729078-17729199 asmbl_2533 // Retained and Spliced Intron # retained_intron 18322459-18322534 (orient:+) max_ev_support = 2 # spliced_intron 18322459-18322534 (orient:+) max_ev_support = 1 scaffold_1 + intron 18322459-18322534 asmbl_2548 scaffold_1 + retained_intron 18322459-18322534 asmbl_2547,asmbl_2549 // Retained and Spliced Intron # retained_intron 18327108-18327318 (orient:+) max_ev_support = 1 # spliced_intron 18327108-18327318 (orient:+) max_ev_support = 2 scaffold_1 + intron 18327108-18327318 asmbl_2550 scaffold_1 + retained_intron 18327108-18327318 asmbl_2551 // Retained and Spliced Intron # retained_intron 18357390-18357458 (orient:+) max_ev_support = 3 # spliced_intron 18357390-18357458 (orient:+) max_ev_support = 1 scaffold_1 + intron 18357390-18357458 asmbl_2560 scaffold_1 + retained_intron 18357390-18357458 asmbl_2559 // Exon Skipping and Retention # skipped_exon 18763264-18766130 (orient:+) max_ev_support = 1 # retained_exon 18763419-18763491 (orient:+) max_ev_support = 1 scaffold_1 + retained_exons 18763419-18763491 asmbl_2570 scaffold_1 + intron_skips_exon 18763264-18766130 asmbl_2569 // Exon Skipping and Retention # skipped_exon 18763264-18765210 (orient:+) max_ev_support = 1 # retained_exon 18763419-18763491 (orient:+) max_ev_support = 1 scaffold_1 + retained_exons 18763419-18763491 asmbl_2570 scaffold_1 + intron_skips_exon 18763264-18765210 asmbl_2571 // Exon Skipping and Retention # skipped_exon 18763492-18766130 (orient:+) max_ev_support = 1 # retained_exon 18765211-18765283 (orient:+) max_ev_support = 1 scaffold_1 + retained_exons 18765211-18765283 asmbl_2571 scaffold_1 + intron_skips_exon 18763492-18766130 asmbl_2570 // Retained and Spliced Intron # retained_intron 19006302-19006412 (orient:+) max_ev_support = 1 # spliced_intron 19006302-19006412 (orient:+) max_ev_support = 1 scaffold_1 + intron 19006302-19006412 asmbl_2573,asmbl_2574 scaffold_1 + retained_intron 19006302-19006412 asmbl_2572 // Retained and Spliced Intron # retained_intron 19006360-19006412 (orient:+) max_ev_support = 1 # spliced_intron 19006360-19006412 (orient:+) max_ev_support = 1 scaffold_1 + intron 19006360-19006412 asmbl_2575 scaffold_1 + retained_intron 19006360-19006412 asmbl_2572 // Retained and Spliced Intron # retained_intron 19006450-19006518 (orient:+) max_ev_support = 1 # spliced_intron 19006450-19006518 (orient:+) max_ev_support = 1 scaffold_1 + intron 19006450-19006518 asmbl_2575 scaffold_1 + retained_intron 19006450-19006518 asmbl_2572,asmbl_2573 // Retained and Spliced Intron # retained_intron 19042133-19042344 (orient:+) max_ev_support = 2 # spliced_intron 19042133-19042344 (orient:+) max_ev_support = 1 scaffold_1 + intron 19042133-19042344 asmbl_2579,asmbl_2581 scaffold_1 + retained_intron 19042133-19042344 asmbl_2578 // Exon Skipping and Retention # skipped_exon 19042448-19044609 (orient:+) max_ev_support = 1 # retained_exon 19042734-19043376 (orient:+) max_ev_support = 1 scaffold_1 + retained_exons 19042734-19043376 asmbl_2581 scaffold_1 + intron_skips_exon 19042448-19044609 asmbl_2578,asmbl_2579 // Retained and Spliced Intron # retained_intron 20132580-20132927 (orient:+) max_ev_support = 4 # spliced_intron 20132580-20132927 (orient:+) max_ev_support = 3 scaffold_1 + intron 20132580-20132927 asmbl_2608 scaffold_1 + retained_intron 20132580-20132927 asmbl_2607 // Retained and Spliced Intron # retained_intron 20132712-20132927 (orient:+) max_ev_support = 4 # spliced_intron 20132712-20132927 (orient:+) max_ev_support = 1 scaffold_1 + intron 20132712-20132927 asmbl_2609 scaffold_1 + retained_intron 20132712-20132927 asmbl_2607 // Retained and Spliced Intron # retained_intron 20338943-20339721 (orient:+) max_ev_support = 5 # spliced_intron 20338943-20339721 (orient:+) max_ev_support = 1 scaffold_1 + intron 20338943-20339721 asmbl_2625 scaffold_1 + retained_intron 20338943-20339721 asmbl_2615,asmbl_2616,asmbl_2617,asmbl_2619 // Retained and Spliced Intron # retained_intron 20338943-20340702 (orient:+) max_ev_support = 5 # spliced_intron 20338943-20340702 (orient:+) max_ev_support = 2 scaffold_1 + intron 20338943-20340702 asmbl_2618 scaffold_1 + retained_intron 20338943-20340702 asmbl_2615,asmbl_2616,asmbl_2617,asmbl_2619 // Retained and Spliced Intron # retained_intron 20339758-20340702 (orient:+) max_ev_support = 5 # spliced_intron 20339758-20340702 (orient:+) max_ev_support = 1 scaffold_1 + intron 20339758-20340702 asmbl_2625 scaffold_1 + retained_intron 20339758-20340702 asmbl_2615,asmbl_2616,asmbl_2617,asmbl_2619 // Retained and Spliced Intron # retained_intron 20341539-20341565 (orient:+) max_ev_support = 2 # spliced_intron 20341539-20341565 (orient:+) max_ev_support = 1 scaffold_1 + intron 20341539-20341565 asmbl_2616 scaffold_1 + retained_intron 20341539-20341565 asmbl_2615 // Retained and Spliced Intron # retained_intron 20341716-20341796 (orient:+) max_ev_support = 1 # spliced_intron 20341716-20341796 (orient:+) max_ev_support = 1 scaffold_1 + intron 20341716-20341796 asmbl_2616 scaffold_1 + retained_intron 20341716-20341796 asmbl_2615 // Retained and Spliced Intron # retained_intron 20347140-20348362 (orient:+) max_ev_support = 3 # spliced_intron 20347140-20348362 (orient:+) max_ev_support = 1 scaffold_1 + intron 20347140-20348362 asmbl_2619 scaffold_1 + retained_intron 20347140-20348362 asmbl_2617,asmbl_2618,asmbl_2623 // Retained and Spliced Intron # retained_intron 20347167-20348278 (orient:+) max_ev_support = 3 # spliced_intron 20347167-20348278 (orient:+) max_ev_support = 1 scaffold_1 + intron 20347167-20348278 asmbl_2621 scaffold_1 + retained_intron 20347167-20348278 asmbl_2617,asmbl_2618,asmbl_2623 // Retained and Spliced Intron # retained_intron 20352061-20352267 (orient:+) max_ev_support = 3 # spliced_intron 20352061-20352267 (orient:+) max_ev_support = 1 scaffold_1 + intron 20352061-20352267 asmbl_2619,asmbl_2622,asmbl_2623,asmbl_2624 scaffold_1 + retained_intron 20352061-20352267 asmbl_2620 // Retained and Spliced Intron # retained_intron 20354313-20354546 (orient:+) max_ev_support = 1 # spliced_intron 20354313-20354546 (orient:+) max_ev_support = 3 scaffold_1 + intron 20354313-20354546 asmbl_2619,asmbl_2620,asmbl_2622,asmbl_2624 scaffold_1 + retained_intron 20354313-20354546 asmbl_2623 // Exon Skipping and Retention # skipped_exon 20338943-20340702 (orient:+) max_ev_support = 2 # retained_exon 20339722-20339757 (orient:+) max_ev_support = 1 scaffold_1 + retained_exons 20339722-20339757 asmbl_2625 scaffold_1 + intron_skips_exon 20338943-20340702 asmbl_2618 // Retained and Spliced Intron # retained_intron 20460128-20460181 (orient:+) max_ev_support = 1 # spliced_intron 20460128-20460181 (orient:+) max_ev_support = 1 scaffold_1 + intron 20460128-20460181 asmbl_2634 scaffold_1 + retained_intron 20460128-20460181 asmbl_2635 // Retained and Spliced Intron # retained_intron 20699413-20699481 (orient:+) max_ev_support = 2 # spliced_intron 20699413-20699481 (orient:+) max_ev_support = 2 scaffold_1 + intron 20699413-20699481 asmbl_2648 scaffold_1 + retained_intron 20699413-20699481 asmbl_2649 // Exon Skipping and Retention # skipped_exon 20966469-20967714 (orient:+) max_ev_support = 1 # retained_exon 20967252-20967429 (orient:+) max_ev_support = 2 scaffold_1 + retained_exons 20967252-20967429 asmbl_2664 scaffold_1 + intron_skips_exon 20966469-20967714 asmbl_2665 // Retained and Spliced Intron # retained_intron 20988978-20989300 (orient:+) max_ev_support = 3 # spliced_intron 20988978-20989300 (orient:+) max_ev_support = 3 scaffold_1 + intron 20988978-20989300 asmbl_2670 scaffold_1 + retained_intron 20988978-20989300 asmbl_2669 // Retained and Spliced Intron # retained_intron 20989024-20989300 (orient:+) max_ev_support = 3 # spliced_intron 20989024-20989300 (orient:+) max_ev_support = 1 scaffold_1 + intron 20989024-20989300 asmbl_2671 scaffold_1 + retained_intron 20989024-20989300 asmbl_2669 // Retained and Spliced Intron # retained_intron 22129065-22129294 (orient:+) max_ev_support = 1 # spliced_intron 22129065-22129294 (orient:+) max_ev_support = 1 scaffold_1 + intron 22129065-22129294 asmbl_2681 scaffold_1 + retained_intron 22129065-22129294 asmbl_2680 // Retained and Spliced Intron # retained_intron 22133297-22134524 (orient:+) max_ev_support = 3 # spliced_intron 22133297-22134524 (orient:+) max_ev_support = 1 scaffold_1 + intron 22133297-22134524 asmbl_2684 scaffold_1 + retained_intron 22133297-22134524 asmbl_2682 // Exon Skipping and Retention # skipped_exon 22133297-22135023 (orient:+) max_ev_support = 1 # retained_exon 22134525-22134589 (orient:+) max_ev_support = 1 scaffold_1 + retained_exons 22134525-22134589 asmbl_2684 scaffold_1 + intron_skips_exon 22133297-22135023 asmbl_2685 // Exon Skipping and Retention # skipped_exon 22371258-22372255 (orient:+) max_ev_support = 1 # retained_exon 22371428-22371479 (orient:+) max_ev_support = 1 scaffold_1 + retained_exons 22371428-22371479 asmbl_2687,asmbl_2688 scaffold_1 + intron_skips_exon 22371258-22372255 asmbl_2690,asmbl_2691 // Exon Skipping and Retention # skipped_exon 22371748-22373576 (orient:+) max_ev_support = 1 # retained_exon 22372438-22372575 (orient:+) max_ev_support = 1 scaffold_1 + retained_exons 22372438-22372575 asmbl_2687,asmbl_2688 scaffold_1 + intron_skips_exon 22371748-22373576 asmbl_2689 // Exon Skipping and Retention # skipped_exon 22371480-22372437 (orient:+) max_ev_support = 1 # retained_exon 22371610-22371747 (orient:+) max_ev_support = 1 scaffold_1 + retained_exons 22371610-22371747 asmbl_2689 scaffold_1 + intron_skips_exon 22371480-22372437 asmbl_2687,asmbl_2688 // Exon Skipping and Retention # skipped_exon 22371480-22372437 (orient:+) max_ev_support = 1 # retained_exon 22372256-22372307 (orient:+) max_ev_support = 1 scaffold_1 + retained_exons 22372256-22372307 asmbl_2690,asmbl_2691 scaffold_1 + intron_skips_exon 22371480-22372437 asmbl_2687,asmbl_2688 // Retained and Spliced Intron # retained_intron 4659-4886 (orient:+) max_ev_support = 3 # spliced_intron 4659-4886 (orient:+) max_ev_support = 2 scaffold_10 + intron 4659-4886 asmbl_2841 scaffold_10 + retained_intron 4659-4886 asmbl_2840 // Retained and Spliced Intron # retained_intron 785465-785549 (orient:+) max_ev_support = 2 # spliced_intron 785465-785549 (orient:+) max_ev_support = 1 scaffold_10 + intron 785465-785549 asmbl_2867 scaffold_10 + retained_intron 785465-785549 asmbl_2866,asmbl_2869 // Retained and Spliced Intron # retained_intron 785638-785839 (orient:+) max_ev_support = 2 # spliced_intron 785638-785839 (orient:+) max_ev_support = 2 scaffold_10 + intron 785638-785839 asmbl_2866,asmbl_2867,asmbl_2870,asmbl_2874,asmbl_2875,asmbl_2876 scaffold_10 + retained_intron 785638-785839 asmbl_2869 // Retained and Spliced Intron # retained_intron 774816-774931 (orient:+) max_ev_support = 1 # spliced_intron 774816-774931 (orient:+) max_ev_support = 1 scaffold_10 + intron 774816-774931 asmbl_2874 scaffold_10 + retained_intron 774816-774931 asmbl_2870,asmbl_2873,asmbl_2875,asmbl_2876 // Retained and Spliced Intron # retained_intron 779629-779931 (orient:+) max_ev_support = 1 # spliced_intron 779629-779931 (orient:+) max_ev_support = 1 scaffold_10 + intron 779629-779931 asmbl_2876 scaffold_10 + retained_intron 779629-779931 asmbl_2870,asmbl_2873,asmbl_2874,asmbl_2875 // Retained and Spliced Intron # retained_intron 922305-922681 (orient:+) max_ev_support = 1 # spliced_intron 922305-922681 (orient:+) max_ev_support = 3 scaffold_10 + intron 922305-922681 asmbl_2879,asmbl_2881 scaffold_10 + retained_intron 922305-922681 asmbl_2882 // Exon Skipping and Retention # skipped_exon 1112389-1112874 (orient:+) max_ev_support = 3 # retained_exon 1112659-1112772 (orient:+) max_ev_support = 3 scaffold_10 + retained_exons 1112659-1112772 asmbl_2902 scaffold_10 + intron_skips_exon 1112389-1112874 asmbl_2903 // Exon Skipping and Retention # skipped_exon 1174340-1176264 (orient:+) max_ev_support = 2 # retained_exon 1175351-1175397 (orient:+) max_ev_support = 2 scaffold_10 + retained_exons 1175351-1175397 asmbl_2915 scaffold_10 + intron_skips_exon 1174340-1176264 asmbl_2914 // Exon Skipping and Retention # skipped_exon 1290276-1292230 (orient:+) max_ev_support = 1 # retained_exon 1292095-1292163 (orient:+) max_ev_support = 2 scaffold_10 + retained_exons 1292095-1292163 asmbl_2923 scaffold_10 + intron_skips_exon 1290276-1292230 asmbl_2926 // Exon Skipping and Retention # skipped_exon 1292164-1295040 (orient:+) max_ev_support = 2 # retained_exon 1292231-1292299 (orient:+) max_ev_support = 1 scaffold_10 + retained_exons 1292231-1292299 asmbl_2926 scaffold_10 + intron_skips_exon 1292164-1295040 asmbl_2923 // Retained and Spliced Intron # retained_intron 1425809-1425931 (orient:+) max_ev_support = 2 # spliced_intron 1425809-1425931 (orient:+) max_ev_support = 1 scaffold_10 + intron 1425809-1425931 asmbl_2939 scaffold_10 + retained_intron 1425809-1425931 asmbl_2932,asmbl_2934,asmbl_2936,asmbl_2938 // Retained and Spliced Intron # retained_intron 1425641-1425720 (orient:+) max_ev_support = 2 # spliced_intron 1425641-1425720 (orient:+) max_ev_support = 2 scaffold_10 + intron 1425641-1425720 asmbl_2932,asmbl_2938,asmbl_2939 scaffold_10 + retained_intron 1425641-1425720 asmbl_2933,asmbl_2934,asmbl_2936 // Retained and Spliced Intron # retained_intron 1424584-1425202 (orient:+) max_ev_support = 2 # spliced_intron 1424584-1425202 (orient:+) max_ev_support = 3 scaffold_10 + intron 1424584-1425202 asmbl_2931,asmbl_2932,asmbl_2933 scaffold_10 + retained_intron 1424584-1425202 asmbl_2934,asmbl_2935,asmbl_2936,asmbl_2937,asmbl_2938,asmbl_2939 // Retained and Spliced Intron # retained_intron 1425641-1425931 (orient:+) max_ev_support = 2 # spliced_intron 1425641-1425931 (orient:+) max_ev_support = 3 scaffold_10 + intron 1425641-1425931 asmbl_2931,asmbl_2935,asmbl_2937 scaffold_10 + retained_intron 1425641-1425931 asmbl_2934,asmbl_2936 // Retained and Spliced Intron # retained_intron 1425275-1425575 (orient:+) max_ev_support = 2 # spliced_intron 1425275-1425575 (orient:+) max_ev_support = 3 scaffold_10 + intron 1425275-1425575 asmbl_2931,asmbl_2932,asmbl_2933,asmbl_2934,asmbl_2937,asmbl_2938,asmbl_2939 scaffold_10 + retained_intron 1425275-1425575 asmbl_2935,asmbl_2936 // Exon Skipping and Retention # skipped_exon 1425641-1425931 (orient:+) max_ev_support = 3 # retained_exon 1425721-1425808 (orient:+) max_ev_support = 1 scaffold_10 + retained_exons 1425721-1425808 asmbl_2939 scaffold_10 + intron_skips_exon 1425641-1425931 asmbl_2931,asmbl_2935,asmbl_2937 // Retained and Spliced Intron # retained_intron 1794196-1794683 (orient:+) max_ev_support = 2 # spliced_intron 1794196-1794683 (orient:+) max_ev_support = 1 scaffold_10 + intron 1794196-1794683 asmbl_2960 scaffold_10 + retained_intron 1794196-1794683 asmbl_2959 // Retained and Spliced Intron # retained_intron 2666399-2667073 (orient:+) max_ev_support = 3 # spliced_intron 2666399-2667073 (orient:+) max_ev_support = 2 scaffold_10 + intron 2666399-2667073 asmbl_2988 scaffold_10 + retained_intron 2666399-2667073 asmbl_2986,asmbl_2987 // Retained and Spliced Intron # retained_intron 2668615-2668805 (orient:+) max_ev_support = 1 # spliced_intron 2668615-2668805 (orient:+) max_ev_support = 2 scaffold_10 + intron 2668615-2668805 asmbl_2986,asmbl_2988 scaffold_10 + retained_intron 2668615-2668805 asmbl_2987 // Retained and Spliced Intron # retained_intron 2668937-2669198 (orient:+) max_ev_support = 1 # spliced_intron 2668937-2669198 (orient:+) max_ev_support = 2 scaffold_10 + intron 2668937-2669198 asmbl_2986,asmbl_2988 scaffold_10 + retained_intron 2668937-2669198 asmbl_2987 // Retained and Spliced Intron # retained_intron 2669269-2669443 (orient:+) max_ev_support = 1 # spliced_intron 2669269-2669443 (orient:+) max_ev_support = 2 scaffold_10 + intron 2669269-2669443 asmbl_2986,asmbl_2988 scaffold_10 + retained_intron 2669269-2669443 asmbl_2987 // Retained and Spliced Intron # retained_intron 2675286-2675371 (orient:+) max_ev_support = 2 # spliced_intron 2675286-2675371 (orient:+) max_ev_support = 1 scaffold_10 + intron 2675286-2675371 asmbl_2994 scaffold_10 + retained_intron 2675286-2675371 asmbl_2991,asmbl_2992,asmbl_2993 // Exon Skipping and Retention # skipped_exon 2675455-2675702 (orient:+) max_ev_support = 1 # retained_exon 2675550-2675608 (orient:+) max_ev_support = 2 scaffold_10 + retained_exons 2675550-2675608 asmbl_2991,asmbl_2994 scaffold_10 + intron_skips_exon 2675455-2675702 asmbl_2992,asmbl_2993 // Retained and Spliced Intron # retained_intron 2752450-2753447 (orient:+) max_ev_support = 2 # spliced_intron 2752450-2753447 (orient:+) max_ev_support = 1 scaffold_10 + intron 2752450-2753447 asmbl_3008 scaffold_10 + retained_intron 2752450-2753447 asmbl_3007,asmbl_3009 // Retained and Spliced Intron # retained_intron 2777398-2777531 (orient:+) max_ev_support = 2 # spliced_intron 2777398-2777531 (orient:+) max_ev_support = 2 scaffold_10 + intron 2777398-2777531 asmbl_3013 scaffold_10 + retained_intron 2777398-2777531 asmbl_3014 // Retained and Spliced Intron # retained_intron 3039893-3040106 (orient:+) max_ev_support = 1 # spliced_intron 3039893-3040106 (orient:+) max_ev_support = 2 scaffold_10 + intron 3039893-3040106 asmbl_3022,asmbl_3024 scaffold_10 + retained_intron 3039893-3040106 asmbl_3023 // Retained and Spliced Intron # retained_intron 3078017-3078168 (orient:+) max_ev_support = 1 # spliced_intron 3078017-3078168 (orient:+) max_ev_support = 2 scaffold_10 + intron 3078017-3078168 asmbl_3027 scaffold_10 + retained_intron 3078017-3078168 asmbl_3028 // Retained and Spliced Intron # retained_intron 3159617-3159862 (orient:+) max_ev_support = 1 # spliced_intron 3159617-3159862 (orient:+) max_ev_support = 2 scaffold_10 + intron 3159617-3159862 asmbl_3030,asmbl_3032 scaffold_10 + retained_intron 3159617-3159862 asmbl_3031,asmbl_3033 // Exon Skipping and Retention # skipped_exon 3384603-3386115 (orient:+) max_ev_support = 3 # retained_exon 3385409-3385600 (orient:+) max_ev_support = 3 scaffold_10 + retained_exons 3385409-3385600 asmbl_3037 scaffold_10 + intron_skips_exon 3384603-3386115 asmbl_3038 // Retained and Spliced Intron # retained_intron 3426012-3426415 (orient:+) max_ev_support = 2 # spliced_intron 3426012-3426415 (orient:+) max_ev_support = 2 scaffold_10 + intron 3426012-3426415 asmbl_3042 scaffold_10 + retained_intron 3426012-3426415 asmbl_3045 // Retained and Spliced Intron # retained_intron 3714042-3714121 (orient:+) max_ev_support = 2 # spliced_intron 3714042-3714121 (orient:+) max_ev_support = 1 scaffold_10 + intron 3714042-3714121 asmbl_3063 scaffold_10 + retained_intron 3714042-3714121 asmbl_3061,asmbl_3062 // Retained and Spliced Intron # retained_intron 3732814-3732994 (orient:+) max_ev_support = 2 # spliced_intron 3732814-3732994 (orient:+) max_ev_support = 2 scaffold_10 + intron 3732814-3732994 asmbl_3066 scaffold_10 + retained_intron 3732814-3732994 asmbl_3065 // Retained and Spliced Intron # retained_intron 3732047-3732294 (orient:+) max_ev_support = 1 # spliced_intron 3732047-3732294 (orient:+) max_ev_support = 2 scaffold_10 + intron 3732047-3732294 asmbl_3065,asmbl_3066 scaffold_10 + retained_intron 3732047-3732294 asmbl_3067 // Exon Skipping and Retention # skipped_exon 4049797-4051046 (orient:+) max_ev_support = 1 # retained_exon 4049896-4050689 (orient:+) max_ev_support = 3 scaffold_10 + retained_exons 4049896-4049951,4050047-4050174,4050326-4050449,4050562-4050689 asmbl_3101,asmbl_3102 scaffold_10 + intron_skips_exon 4049797-4051046 asmbl_3104 // Exon Skipping and Retention # skipped_exon 5177142-5178792 (orient:+) max_ev_support = 1 # retained_exon 5178322-5178379 (orient:+) max_ev_support = 2 scaffold_10 + retained_exons 5178322-5178379 asmbl_3148,asmbl_3154 scaffold_10 + intron_skips_exon 5177142-5178792 asmbl_3147,asmbl_3149 // Exon Skipping and Retention # skipped_exon 5174275-5176857 (orient:+) max_ev_support = 2 # retained_exon 5175651-5175802 (orient:+) max_ev_support = 2 scaffold_10 + retained_exons 5175651-5175802 asmbl_3149 scaffold_10 + intron_skips_exon 5174275-5176857 asmbl_3147,asmbl_3148,asmbl_3154 // Exon Skipping and Retention # skipped_exon 5390028-5390782 (orient:+) max_ev_support = 2 # retained_exon 5390518-5390544 (orient:+) max_ev_support = 2 scaffold_10 + retained_exons 5390518-5390544 asmbl_3166 scaffold_10 + intron_skips_exon 5390028-5390782 asmbl_3167 // Retained and Spliced Intron # retained_intron 5390028-5390517 (orient:+) max_ev_support = 2 # spliced_intron 5390028-5390517 (orient:+) max_ev_support = 2 scaffold_10 + intron 5390028-5390517 asmbl_3166 scaffold_10 + retained_intron 5390028-5390517 asmbl_3168 // Retained and Spliced Intron # retained_intron 5390028-5390782 (orient:+) max_ev_support = 2 # spliced_intron 5390028-5390782 (orient:+) max_ev_support = 2 scaffold_10 + intron 5390028-5390782 asmbl_3167 scaffold_10 + retained_intron 5390028-5390782 asmbl_3168 // Retained and Spliced Intron # retained_intron 5390545-5390782 (orient:+) max_ev_support = 2 # spliced_intron 5390545-5390782 (orient:+) max_ev_support = 2 scaffold_10 + intron 5390545-5390782 asmbl_3166 scaffold_10 + retained_intron 5390545-5390782 asmbl_3168 // Retained and Spliced Intron # retained_intron 5495263-5495288 (orient:+) max_ev_support = 1 # spliced_intron 5495263-5495288 (orient:+) max_ev_support = 2 scaffold_10 + intron 5495263-5495288 asmbl_3175 scaffold_10 + retained_intron 5495263-5495288 asmbl_3176 // Retained and Spliced Intron # retained_intron 5536926-5537113 (orient:+) max_ev_support = 2 # spliced_intron 5536926-5537113 (orient:+) max_ev_support = 2 scaffold_10 + intron 5536926-5537113 asmbl_3183 scaffold_10 + retained_intron 5536926-5537113 asmbl_3182 // Retained and Spliced Intron # retained_intron 5687438-5687977 (orient:+) max_ev_support = 2 # spliced_intron 5687438-5687977 (orient:+) max_ev_support = 1 scaffold_10 + intron 5687438-5687977 asmbl_3192 scaffold_10 + retained_intron 5687438-5687977 asmbl_3191,asmbl_3193 // Retained and Spliced Intron # retained_intron 5823736-5824113 (orient:+) max_ev_support = 2 # spliced_intron 5823736-5824113 (orient:+) max_ev_support = 3 scaffold_10 + intron 5823736-5824113 asmbl_3208 scaffold_10 + retained_intron 5823736-5824113 asmbl_3209 // Retained and Spliced Intron # retained_intron 5823736-5824133 (orient:+) max_ev_support = 2 # spliced_intron 5823736-5824133 (orient:+) max_ev_support = 3 scaffold_10 + intron 5823736-5824133 asmbl_3207 scaffold_10 + retained_intron 5823736-5824133 asmbl_3209 // Exon Skipping and Retention # skipped_exon 6052141-6054671 (orient:+) max_ev_support = 2 # retained_exon 6052478-6052558 (orient:+) max_ev_support = 2 scaffold_10 + retained_exons 6052478-6052558 asmbl_3221,asmbl_3227 scaffold_10 + intron_skips_exon 6052141-6054671 asmbl_3229 // Retained and Spliced Intron # retained_intron 6065331-6066224 (orient:+) max_ev_support = 2 # spliced_intron 6065331-6066224 (orient:+) max_ev_support = 2 scaffold_10 + intron 6065331-6066224 asmbl_3221,asmbl_3228 scaffold_10 + retained_intron 6065331-6066224 asmbl_3225,asmbl_3227,asmbl_3229,asmbl_3230 // Exon Skipping and Retention # skipped_exon 7270639-7271459 (orient:+) max_ev_support = 2 # retained_exon 7270930-7270986 (orient:+) max_ev_support = 2 scaffold_10 + retained_exons 7270930-7270986 asmbl_3269,asmbl_3272,asmbl_3273 scaffold_10 + intron_skips_exon 7270639-7271459 asmbl_3270 // Retained and Spliced Intron # retained_intron 7276486-7276839 (orient:+) max_ev_support = 1 # spliced_intron 7276486-7276839 (orient:+) max_ev_support = 2 scaffold_10 + intron 7276486-7276839 asmbl_3269,asmbl_3270,asmbl_3275 scaffold_10 + retained_intron 7276486-7276839 asmbl_3271,asmbl_3273,asmbl_3274 // Exon Skipping and Retention # skipped_exon 7502183-7505111 (orient:+) max_ev_support = 1 # retained_exon 7504235-7504270 (orient:+) max_ev_support = 2 scaffold_10 + retained_exons 7504235-7504270 asmbl_3278 scaffold_10 + intron_skips_exon 7502183-7505111 asmbl_3279 // Retained and Spliced Intron # retained_intron 7672393-7672816 (orient:+) max_ev_support = 1 # spliced_intron 7672393-7672816 (orient:+) max_ev_support = 1 scaffold_10 + intron 7672393-7672816 asmbl_3293 scaffold_10 + retained_intron 7672393-7672816 asmbl_3292 // Retained and Spliced Intron # retained_intron 7672393-7673371 (orient:+) max_ev_support = 3 # spliced_intron 7672393-7673371 (orient:+) max_ev_support = 1 scaffold_10 + intron 7672393-7673371 asmbl_3294 scaffold_10 + retained_intron 7672393-7673371 asmbl_3292 // Retained and Spliced Intron # retained_intron 7684017-7685179 (orient:+) max_ev_support = 3 # spliced_intron 7684017-7685179 (orient:+) max_ev_support = 3 scaffold_10 + intron 7684017-7685179 asmbl_3297,asmbl_3298 scaffold_10 + retained_intron 7684017-7685179 asmbl_3296 // Retained and Spliced Intron # retained_intron 7684958-7685179 (orient:+) max_ev_support = 3 # spliced_intron 7684958-7685179 (orient:+) max_ev_support = 1 scaffold_10 + intron 7684958-7685179 asmbl_3299 scaffold_10 + retained_intron 7684958-7685179 asmbl_3296 // Retained and Spliced Intron # retained_intron 7685649-7686027 (orient:+) max_ev_support = 3 # spliced_intron 7685649-7686027 (orient:+) max_ev_support = 2 scaffold_10 + intron 7685649-7686027 asmbl_3298 scaffold_10 + retained_intron 7685649-7686027 asmbl_3296,asmbl_3297 // Retained and Spliced Intron # retained_intron 8347047-8347182 (orient:+) max_ev_support = 2 # spliced_intron 8347047-8347182 (orient:+) max_ev_support = 1 scaffold_10 + intron 8347047-8347182 asmbl_3316 scaffold_10 + retained_intron 8347047-8347182 asmbl_3315 // Retained and Spliced Intron # retained_intron 8908482-8908686 (orient:+) max_ev_support = 2 # spliced_intron 8908482-8908686 (orient:+) max_ev_support = 1 scaffold_10 + intron 8908482-8908686 asmbl_3337 scaffold_10 + retained_intron 8908482-8908686 asmbl_3335,asmbl_3338,asmbl_3339 // Retained and Spliced Intron # retained_intron 8916906-8917220 (orient:+) max_ev_support = 2 # spliced_intron 8916906-8917220 (orient:+) max_ev_support = 2 scaffold_10 + intron 8916906-8917220 asmbl_3341,asmbl_3342,asmbl_3343 scaffold_10 + retained_intron 8916906-8917220 asmbl_3340 // Retained and Spliced Intron # retained_intron 8917449-8918183 (orient:+) max_ev_support = 2 # spliced_intron 8917449-8918183 (orient:+) max_ev_support = 2 scaffold_10 + intron 8917449-8918183 asmbl_3342 scaffold_10 + retained_intron 8917449-8918183 asmbl_3341 // Retained and Spliced Intron # retained_intron 8917894-8918183 (orient:+) max_ev_support = 2 # spliced_intron 8917894-8918183 (orient:+) max_ev_support = 1 scaffold_10 + intron 8917894-8918183 asmbl_3343 scaffold_10 + retained_intron 8917894-8918183 asmbl_3341 // Retained and Spliced Intron # retained_intron 8952261-8952966 (orient:+) max_ev_support = 1 # spliced_intron 8952261-8952966 (orient:+) max_ev_support = 3 scaffold_10 + intron 8952261-8952966 asmbl_3347 scaffold_10 + retained_intron 8952261-8952966 asmbl_3348 // Exon Skipping and Retention # skipped_exon 9003426-9004232 (orient:+) max_ev_support = 1 # retained_exon 9003657-9003692 (orient:+) max_ev_support = 3 scaffold_10 + retained_exons 9003657-9003692 asmbl_3351,asmbl_3352 scaffold_10 + intron_skips_exon 9003426-9004232 asmbl_3353 // Exon Skipping and Retention # skipped_exon 9003426-9004229 (orient:+) max_ev_support = 1 # retained_exon 9003657-9003692 (orient:+) max_ev_support = 3 scaffold_10 + retained_exons 9003657-9003692 asmbl_3351,asmbl_3352 scaffold_10 + intron_skips_exon 9003426-9004229 asmbl_3354 // Retained and Spliced Intron # retained_intron 9041499-9041894 (orient:+) max_ev_support = 2 # spliced_intron 9041499-9041894 (orient:+) max_ev_support = 2 scaffold_10 + intron 9041499-9041894 asmbl_3358,asmbl_3360 scaffold_10 + retained_intron 9041499-9041894 asmbl_3359 // Retained and Spliced Intron # retained_intron 9042003-9042107 (orient:+) max_ev_support = 2 # spliced_intron 9042003-9042107 (orient:+) max_ev_support = 2 scaffold_10 + intron 9042003-9042107 asmbl_3358,asmbl_3360 scaffold_10 + retained_intron 9042003-9042107 asmbl_3359 // Retained and Spliced Intron # retained_intron 9041054-9041325 (orient:+) max_ev_support = 1 # spliced_intron 9041054-9041325 (orient:+) max_ev_support = 2 scaffold_10 + intron 9041054-9041325 asmbl_3358 scaffold_10 + retained_intron 9041054-9041325 asmbl_3360 // Retained and Spliced Intron # retained_intron 9071539-9071698 (orient:+) max_ev_support = 2 # spliced_intron 9071539-9071698 (orient:+) max_ev_support = 2 scaffold_10 + intron 9071539-9071698 asmbl_3361,asmbl_3365,asmbl_3366 scaffold_10 + retained_intron 9071539-9071698 asmbl_3362 // Retained and Spliced Intron # retained_intron 9074945-9075599 (orient:+) max_ev_support = 2 # spliced_intron 9074945-9075599 (orient:+) max_ev_support = 1 scaffold_10 + intron 9074945-9075599 asmbl_3365 scaffold_10 + retained_intron 9074945-9075599 asmbl_3364,asmbl_3366 // Exon Skipping and Retention # skipped_exon 9360859-9363246 (orient:+) max_ev_support = 1 # retained_exon 9361726-9363040 (orient:+) max_ev_support = 2 scaffold_10 + retained_exons 9361726-9361856,9362058-9362174,9362325-9362443,9362590-9362739,9362869-9363040 asmbl_3372,asmbl_3373 scaffold_10 + intron_skips_exon 9360859-9363246 asmbl_3374 // Retained and Spliced Intron # retained_intron 9554427-9554812 (orient:+) max_ev_support = 1 # spliced_intron 9554427-9554812 (orient:+) max_ev_support = 2 scaffold_10 + intron 9554427-9554812 asmbl_3402,asmbl_3403 scaffold_10 + retained_intron 9554427-9554812 asmbl_3399 // Retained and Spliced Intron # retained_intron 9546459-9546855 (orient:+) max_ev_support = 2 # spliced_intron 9546459-9546855 (orient:+) max_ev_support = 1 scaffold_10 + intron 9546459-9546855 asmbl_3398 scaffold_10 + retained_intron 9546459-9546855 asmbl_3400 // Exon Skipping and Retention # skipped_exon 9552657-9554812 (orient:+) max_ev_support = 1 # retained_exon 9554352-9554426 (orient:+) max_ev_support = 1 scaffold_10 + retained_exons 9554352-9554426 asmbl_3403 scaffold_10 + intron_skips_exon 9552657-9554812 asmbl_3397,asmbl_3404 // Retained and Spliced Intron # retained_intron 9555114-9555373 (orient:+) max_ev_support = 1 # spliced_intron 9555114-9555373 (orient:+) max_ev_support = 3 scaffold_10 + intron 9555114-9555373 asmbl_3397,asmbl_3399,asmbl_3402,asmbl_3403,asmbl_3404 scaffold_10 + retained_intron 9555114-9555373 asmbl_3405 // Retained and Spliced Intron # retained_intron 9555421-9557098 (orient:+) max_ev_support = 1 # spliced_intron 9555421-9557098 (orient:+) max_ev_support = 1 scaffold_10 + intron 9555421-9557098 asmbl_3403 scaffold_10 + retained_intron 9555421-9557098 asmbl_3405 // Retained and Spliced Intron # retained_intron 9555581-9557098 (orient:+) max_ev_support = 1 # spliced_intron 9555581-9557098 (orient:+) max_ev_support = 2 scaffold_10 + intron 9555581-9557098 asmbl_3402,asmbl_3404 scaffold_10 + retained_intron 9555581-9557098 asmbl_3405 // Retained and Spliced Intron # retained_intron 9555608-9557098 (orient:+) max_ev_support = 1 # spliced_intron 9555608-9557098 (orient:+) max_ev_support = 3 scaffold_10 + intron 9555608-9557098 asmbl_3397,asmbl_3399 scaffold_10 + retained_intron 9555608-9557098 asmbl_3405 // Retained and Spliced Intron # retained_intron 10801165-10801378 (orient:+) max_ev_support = 1 # spliced_intron 10801165-10801378 (orient:+) max_ev_support = 3 scaffold_10 + intron 10801165-10801378 asmbl_3436,asmbl_3438 scaffold_10 + retained_intron 10801165-10801378 asmbl_3439 // Retained and Spliced Intron # retained_intron 11093689-11093875 (orient:+) max_ev_support = 3 # spliced_intron 11093689-11093875 (orient:+) max_ev_support = 3 scaffold_10 + intron 11093689-11093875 asmbl_3448 scaffold_10 + retained_intron 11093689-11093875 asmbl_3447 // Retained and Spliced Intron # retained_intron 11486695-11488591 (orient:+) max_ev_support = 3 # spliced_intron 11486695-11488591 (orient:+) max_ev_support = 1 scaffold_10 + intron 11486695-11488591 asmbl_3462 scaffold_10 + retained_intron 11486695-11488591 asmbl_3461 // Exon Skipping and Retention # skipped_exon 11595100-11596812 (orient:+) max_ev_support = 1 # retained_exon 11596017-11596274 (orient:+) max_ev_support = 1 scaffold_10 + retained_exons 11596017-11596274 asmbl_3476,asmbl_3477 scaffold_10 + intron_skips_exon 11595100-11596812 asmbl_3475 // Retained and Spliced Intron # retained_intron 11603598-11603890 (orient:+) max_ev_support = 3 # spliced_intron 11603598-11603890 (orient:+) max_ev_support = 3 scaffold_10 + intron 11603598-11603890 asmbl_3474,asmbl_3475,asmbl_3476,asmbl_3477,asmbl_3480,asmbl_3485,asmbl_3486 scaffold_10 + retained_intron 11603598-11603890 asmbl_3478 // Retained and Spliced Intron # retained_intron 11601926-11602115 (orient:+) max_ev_support = 1 # spliced_intron 11601926-11602115 (orient:+) max_ev_support = 3 scaffold_10 + intron 11601926-11602115 asmbl_3474,asmbl_3475,asmbl_3476,asmbl_3477,asmbl_3486 scaffold_10 + retained_intron 11601926-11602115 asmbl_3480 // Retained and Spliced Intron # retained_intron 11907708-11908477 (orient:+) max_ev_support = 2 # spliced_intron 11907708-11908477 (orient:+) max_ev_support = 3 scaffold_10 + intron 11907708-11908477 asmbl_3501,asmbl_3503 scaffold_10 + retained_intron 11907708-11908477 asmbl_3502,asmbl_3504,asmbl_3505 // Retained and Spliced Intron # retained_intron 11908965-11909113 (orient:+) max_ev_support = 2 # spliced_intron 11908965-11909113 (orient:+) max_ev_support = 3 scaffold_10 + intron 11908965-11909113 asmbl_3501,asmbl_3504 scaffold_10 + retained_intron 11908965-11909113 asmbl_3502,asmbl_3503,asmbl_3505 // Retained and Spliced Intron # retained_intron 11909255-11909403 (orient:+) max_ev_support = 2 # spliced_intron 11909255-11909403 (orient:+) max_ev_support = 3 scaffold_10 + intron 11909255-11909403 asmbl_3501,asmbl_3504,asmbl_3505 scaffold_10 + retained_intron 11909255-11909403 asmbl_3502,asmbl_3503 // Exon Skipping and Retention # skipped_exon 11970189-11971545 (orient:+) max_ev_support = 1 # retained_exon 11970269-11971084 (orient:+) max_ev_support = 1 scaffold_10 + retained_exons 11970269-11970419,11970502-11970636,11970893-11971084 asmbl_3508 scaffold_10 + retained_exons 11970269-11970636,11970893-11971084 asmbl_3510 scaffold_10 + intron_skips_exon 11970189-11971545 asmbl_3518 // Retained and Spliced Intron # retained_intron 11971420-11971467 (orient:+) max_ev_support = 1 # spliced_intron 11971420-11971467 (orient:+) max_ev_support = 1 scaffold_10 + intron 11971420-11971467 asmbl_3509 scaffold_10 + retained_intron 11971420-11971467 asmbl_3508,asmbl_3510,asmbl_3515 // Retained and Spliced Intron # retained_intron 11970420-11970501 (orient:+) max_ev_support = 1 # spliced_intron 11970420-11970501 (orient:+) max_ev_support = 1 scaffold_10 + intron 11970420-11970501 asmbl_3508,asmbl_3509 scaffold_10 + retained_intron 11970420-11970501 asmbl_3510,asmbl_3515 // Retained and Spliced Intron # retained_intron 11968331-11968370 (orient:+) max_ev_support = 2 # spliced_intron 11968331-11968370 (orient:+) max_ev_support = 1 scaffold_10 + intron 11968331-11968370 asmbl_3519 scaffold_10 + retained_intron 11968331-11968370 asmbl_3513 // Retained and Spliced Intron # retained_intron 12053237-12053342 (orient:+) max_ev_support = 2 # spliced_intron 12053237-12053342 (orient:+) max_ev_support = 2 scaffold_10 + intron 12053237-12053342 asmbl_3523 scaffold_10 + retained_intron 12053237-12053342 asmbl_3522,asmbl_3524 // Retained and Spliced Intron # retained_intron 12069498-12070132 (orient:+) max_ev_support = 2 # spliced_intron 12069498-12070132 (orient:+) max_ev_support = 2 scaffold_10 + intron 12069498-12070132 asmbl_3526 scaffold_10 + retained_intron 12069498-12070132 asmbl_3527 // Retained and Spliced Intron # retained_intron 12679575-12679670 (orient:+) max_ev_support = 2 # spliced_intron 12679575-12679670 (orient:+) max_ev_support = 2 scaffold_10 + intron 12679575-12679670 asmbl_3536 scaffold_10 + retained_intron 12679575-12679670 asmbl_3537,asmbl_3538 // Retained and Spliced Intron # retained_intron 12726885-12726904 (orient:+) max_ev_support = 1 # spliced_intron 12726885-12726904 (orient:+) max_ev_support = 1 scaffold_10 + intron 12726885-12726904 asmbl_3539 scaffold_10 + retained_intron 12726885-12726904 asmbl_3540 // Exon Skipping and Retention # skipped_exon 12818068-12819821 (orient:+) max_ev_support = 1 # retained_exon 12818218-12819520 (orient:+) max_ev_support = 2 scaffold_10 + retained_exons 12818218-12818329,12819332-12819520 asmbl_3546,asmbl_3548 scaffold_10 + intron_skips_exon 12818068-12819821 asmbl_3547 // Retained and Spliced Intron # retained_intron 12946554-12946681 (orient:+) max_ev_support = 2 # spliced_intron 12946554-12946681 (orient:+) max_ev_support = 3 scaffold_10 + intron 12946554-12946681 asmbl_3560 scaffold_10 + retained_intron 12946554-12946681 asmbl_3561 // Exon Skipping and Retention # skipped_exon 13002218-13002734 (orient:+) max_ev_support = 2 # retained_exon 13002488-13002626 (orient:+) max_ev_support = 2 scaffold_10 + retained_exons 13002488-13002626 asmbl_3571 scaffold_10 + intron_skips_exon 13002218-13002734 asmbl_3572 // Retained and Spliced Intron # retained_intron 13002218-13002487 (orient:+) max_ev_support = 2 # spliced_intron 13002218-13002487 (orient:+) max_ev_support = 2 scaffold_10 + intron 13002218-13002487 asmbl_3571 scaffold_10 + retained_intron 13002218-13002487 asmbl_3573 // Exon Skipping and Retention # skipped_exon 13120565-13121189 (orient:+) max_ev_support = 1 # retained_exon 13120921-13121073 (orient:+) max_ev_support = 4 scaffold_10 + retained_exons 13120921-13121073 asmbl_3581 scaffold_10 + intron_skips_exon 13120565-13121189 asmbl_3582 // Retained and Spliced Intron # retained_intron 13280730-13280885 (orient:+) max_ev_support = 2 # spliced_intron 13280730-13280885 (orient:+) max_ev_support = 1 scaffold_10 + intron 13280730-13280885 asmbl_3590 scaffold_10 + retained_intron 13280730-13280885 asmbl_3588,asmbl_3589 // Retained and Spliced Intron # retained_intron 13279609-13280597 (orient:+) max_ev_support = 2 # spliced_intron 13279609-13280597 (orient:+) max_ev_support = 2 scaffold_10 + intron 13279609-13280597 asmbl_3588 scaffold_10 + retained_intron 13279609-13280597 asmbl_3589 // Retained and Spliced Intron # retained_intron 13300486-13300597 (orient:+) max_ev_support = 1 # spliced_intron 13300486-13300597 (orient:+) max_ev_support = 2 scaffold_10 + intron 13300486-13300597 asmbl_3591,asmbl_3593 scaffold_10 + retained_intron 13300486-13300597 asmbl_3592 // Retained and Spliced Intron # retained_intron 13300842-13301043 (orient:+) max_ev_support = 1 # spliced_intron 13300842-13301043 (orient:+) max_ev_support = 2 scaffold_10 + intron 13300842-13301043 asmbl_3591,asmbl_3592 scaffold_10 + retained_intron 13300842-13301043 asmbl_3593 // Retained and Spliced Intron # retained_intron 13304334-13304549 (orient:+) max_ev_support = 1 # spliced_intron 13304334-13304549 (orient:+) max_ev_support = 2 scaffold_10 + intron 13304334-13304549 asmbl_3591,asmbl_3592,asmbl_3593 scaffold_10 + retained_intron 13304334-13304549 asmbl_3594 // Retained and Spliced Intron # retained_intron 13521752-13521830 (orient:+) max_ev_support = 3 # spliced_intron 13521752-13521830 (orient:+) max_ev_support = 2 scaffold_10 + intron 13521752-13521830 asmbl_3612 scaffold_10 + retained_intron 13521752-13521830 asmbl_3611 // Retained and Spliced Intron # retained_intron 13767257-13767588 (orient:+) max_ev_support = 1 # spliced_intron 13767257-13767588 (orient:+) max_ev_support = 1 scaffold_10 + intron 13767257-13767588 asmbl_3617 scaffold_10 + retained_intron 13767257-13767588 asmbl_3616 // Retained and Spliced Intron # retained_intron 13787525-13787965 (orient:+) max_ev_support = 1 # spliced_intron 13787525-13787965 (orient:+) max_ev_support = 1 scaffold_10 + intron 13787525-13787965 asmbl_3619 scaffold_10 + retained_intron 13787525-13787965 asmbl_3624 // Exon Skipping and Retention # skipped_exon 13914729-13915905 (orient:+) max_ev_support = 2 # retained_exon 13914936-13915154 (orient:+) max_ev_support = 2 scaffold_10 + retained_exons 13914936-13915154 asmbl_3629 scaffold_10 + intron_skips_exon 13914729-13915905 asmbl_3630,asmbl_3631 // Retained and Spliced Intron # retained_intron 13919739-13919961 (orient:+) max_ev_support = 1 # spliced_intron 13919739-13919961 (orient:+) max_ev_support = 2 scaffold_10 + intron 13919739-13919961 asmbl_3633 scaffold_10 + retained_intron 13919739-13919961 asmbl_3634 // Retained and Spliced Intron # retained_intron 14680476-14680668 (orient:+) max_ev_support = 5 # spliced_intron 14680476-14680668 (orient:+) max_ev_support = 2 scaffold_10 + intron 14680476-14680668 asmbl_3647 scaffold_10 + retained_intron 14680476-14680668 asmbl_3646 // Retained and Spliced Intron # retained_intron 15426722-15426763 (orient:+) max_ev_support = 1 # spliced_intron 15426722-15426763 (orient:+) max_ev_support = 1 scaffold_10 + intron 15426722-15426763 asmbl_3687 scaffold_10 + retained_intron 15426722-15426763 asmbl_3685 // Exon Skipping and Retention # skipped_exon 16257718-16258476 (orient:+) max_ev_support = 1 # retained_exon 16257932-16258017 (orient:+) max_ev_support = 2 scaffold_10 + retained_exons 16257932-16258017 asmbl_3707,asmbl_3708 scaffold_10 + intron_skips_exon 16257718-16258476 asmbl_3709,asmbl_3710 // Exon Skipping and Retention # skipped_exon 16258018-16259449 (orient:+) max_ev_support = 2 # retained_exon 16258477-16258562 (orient:+) max_ev_support = 1 scaffold_10 + retained_exons 16258477-16258562 asmbl_3709,asmbl_3710 scaffold_10 + intron_skips_exon 16258018-16259449 asmbl_3707,asmbl_3708 // Retained and Spliced Intron # retained_intron 16531561-16531803 (orient:+) max_ev_support = 1 # spliced_intron 16531561-16531803 (orient:+) max_ev_support = 2 scaffold_10 + intron 16531561-16531803 asmbl_3718,asmbl_3720 scaffold_10 + retained_intron 16531561-16531803 asmbl_3719,asmbl_3723 // Exon Skipping and Retention # skipped_exon 16821281-16823004 (orient:+) max_ev_support = 1 # retained_exon 16822208-16822303 (orient:+) max_ev_support = 1 scaffold_10 + retained_exons 16822208-16822303 asmbl_3726 scaffold_10 + intron_skips_exon 16821281-16823004 asmbl_3727 // Exon Skipping and Retention # skipped_exon 16822304-16824535 (orient:+) max_ev_support = 1 # retained_exon 16823005-16823100 (orient:+) max_ev_support = 1 scaffold_10 + retained_exons 16823005-16823100 asmbl_3727 scaffold_10 + intron_skips_exon 16822304-16824535 asmbl_3726 // Retained and Spliced Intron # retained_intron 17328288-17328429 (orient:+) max_ev_support = 2 # spliced_intron 17328288-17328429 (orient:+) max_ev_support = 1 scaffold_10 + intron 17328288-17328429 asmbl_3764 scaffold_10 + retained_intron 17328288-17328429 asmbl_3763 // Exon Skipping and Retention # skipped_exon 17394143-17395941 (orient:+) max_ev_support = 1 # retained_exon 17395184-17395229 (orient:+) max_ev_support = 1 scaffold_10 + retained_exons 17395184-17395229 asmbl_3772,asmbl_3773 scaffold_10 + intron_skips_exon 17394143-17395941 asmbl_3774 // Exon Skipping and Retention # skipped_exon 17683194-17684814 (orient:+) max_ev_support = 1 # retained_exon 17684425-17684546 (orient:+) max_ev_support = 1 scaffold_10 + retained_exons 17684425-17684546 asmbl_3788 scaffold_10 + intron_skips_exon 17683194-17684814 asmbl_3789 // Exon Skipping and Retention # skipped_exon 17682892-17684424 (orient:+) max_ev_support = 1 # retained_exon 17683072-17683193 (orient:+) max_ev_support = 1 scaffold_10 + retained_exons 17683072-17683193 asmbl_3789 scaffold_10 + intron_skips_exon 17682892-17684424 asmbl_3788 // Retained and Spliced Intron # retained_intron 207548-207639 (orient:-) max_ev_support = 1 # spliced_intron 207548-207639 (orient:-) max_ev_support = 2 scaffold_10 - intron 207548-207639 asmbl_3921,asmbl_3924,asmbl_3925 scaffold_10 - retained_intron 207548-207639 asmbl_3923 // Retained and Spliced Intron # retained_intron 326050-326526 (orient:-) max_ev_support = 3 # spliced_intron 326050-326526 (orient:-) max_ev_support = 3 scaffold_10 - intron 326050-326526 asmbl_3930 scaffold_10 - retained_intron 326050-326526 asmbl_3931 // Retained and Spliced Intron # retained_intron 378745-378845 (orient:-) max_ev_support = 3 # spliced_intron 378745-378845 (orient:-) max_ev_support = 2 scaffold_10 - intron 378745-378845 asmbl_3947 scaffold_10 - retained_intron 378745-378845 asmbl_3945,asmbl_3946 // Retained and Spliced Intron # retained_intron 378745-379004 (orient:-) max_ev_support = 3 # spliced_intron 378745-379004 (orient:-) max_ev_support = 2 scaffold_10 - intron 378745-379004 asmbl_3948 scaffold_10 - retained_intron 378745-379004 asmbl_3945 // Retained and Spliced Intron # retained_intron 378915-379004 (orient:-) max_ev_support = 2 # spliced_intron 378915-379004 (orient:-) max_ev_support = 2 scaffold_10 - intron 378915-379004 asmbl_3946,asmbl_3947 scaffold_10 - retained_intron 378915-379004 asmbl_3945,asmbl_3949,asmbl_3950 // Exon Skipping and Retention # skipped_exon 378745-379004 (orient:-) max_ev_support = 2 # retained_exon 378846-378914 (orient:-) max_ev_support = 2 scaffold_10 - retained_exons 378846-378914 asmbl_3947 scaffold_10 - intron_skips_exon 378745-379004 asmbl_3948 // Retained and Spliced Intron # retained_intron 379136-379266 (orient:-) max_ev_support = 2 # spliced_intron 379136-379266 (orient:-) max_ev_support = 2 scaffold_10 - intron 379136-379266 asmbl_3945,asmbl_3946,asmbl_3947,asmbl_3948,asmbl_3949 scaffold_10 - retained_intron 379136-379266 asmbl_3950 // Retained and Spliced Intron # retained_intron 556785-556911 (orient:-) max_ev_support = 1 # spliced_intron 556785-556911 (orient:-) max_ev_support = 3 scaffold_10 - intron 556785-556911 asmbl_3967 scaffold_10 - retained_intron 556785-556911 asmbl_3968,asmbl_3969 // Retained and Spliced Intron # retained_intron 634820-635077 (orient:-) max_ev_support = 3 # spliced_intron 634820-635077 (orient:-) max_ev_support = 2 scaffold_10 - intron 634820-635077 asmbl_3973,asmbl_3974,asmbl_3975,asmbl_3977 scaffold_10 - retained_intron 634820-635077 asmbl_3972 // Retained and Spliced Intron # retained_intron 635222-635413 (orient:-) max_ev_support = 3 # spliced_intron 635222-635413 (orient:-) max_ev_support = 2 scaffold_10 - intron 635222-635413 asmbl_3973 scaffold_10 - retained_intron 635222-635413 asmbl_3972,asmbl_3975,asmbl_3977 // Retained and Spliced Intron # retained_intron 714718-715006 (orient:-) max_ev_support = 2 # spliced_intron 714718-715006 (orient:-) max_ev_support = 1 scaffold_10 - intron 714718-715006 asmbl_3987,asmbl_3988,asmbl_3989,asmbl_3992 scaffold_10 - retained_intron 714718-715006 asmbl_3986,asmbl_3990,asmbl_3991 // Retained and Spliced Intron # retained_intron 715100-715709 (orient:-) max_ev_support = 2 # spliced_intron 715100-715709 (orient:-) max_ev_support = 1 scaffold_10 - intron 715100-715709 asmbl_3988,asmbl_3989,asmbl_3992 scaffold_10 - retained_intron 715100-715709 asmbl_3986,asmbl_3987,asmbl_3990,asmbl_3991 // Retained and Spliced Intron # retained_intron 715906-716550 (orient:-) max_ev_support = 2 # spliced_intron 715906-716550 (orient:-) max_ev_support = 1 scaffold_10 - intron 715906-716550 asmbl_3988,asmbl_3989,asmbl_3991 scaffold_10 - retained_intron 715906-716550 asmbl_3986,asmbl_3987,asmbl_3990,asmbl_3992 // Retained and Spliced Intron # retained_intron 716590-716682 (orient:-) max_ev_support = 2 # spliced_intron 716590-716682 (orient:-) max_ev_support = 1 scaffold_10 - intron 716590-716682 asmbl_3989 scaffold_10 - retained_intron 716590-716682 asmbl_3986,asmbl_3987,asmbl_3990,asmbl_3992 // Retained and Spliced Intron # retained_intron 716590-716853 (orient:-) max_ev_support = 2 # spliced_intron 716590-716853 (orient:-) max_ev_support = 1 scaffold_10 - intron 716590-716853 asmbl_3988,asmbl_3991 scaffold_10 - retained_intron 716590-716853 asmbl_3986,asmbl_3987,asmbl_3990,asmbl_3992 // Retained and Spliced Intron # retained_intron 713246-713732 (orient:-) max_ev_support = 1 # spliced_intron 713246-713732 (orient:-) max_ev_support = 1 scaffold_10 - intron 713246-713732 asmbl_3986,asmbl_3987,asmbl_3988 scaffold_10 - retained_intron 713246-713732 asmbl_3989 // Retained and Spliced Intron # retained_intron 761892-761975 (orient:-) max_ev_support = 2 # spliced_intron 761892-761975 (orient:-) max_ev_support = 3 scaffold_10 - intron 761892-761975 asmbl_4004,asmbl_4005,asmbl_4007 scaffold_10 - retained_intron 761892-761975 asmbl_4006 // Exon Skipping and Retention # skipped_exon 926155-927706 (orient:-) max_ev_support = 1 # retained_exon 926313-926810 (orient:-) max_ev_support = 3 scaffold_10 - retained_exons 926313-926409,926651-926810 asmbl_4009,asmbl_4010 scaffold_10 - intron_skips_exon 926155-927706 asmbl_4012 // Retained and Spliced Intron # retained_intron 928914-929115 (orient:-) max_ev_support = 3 # spliced_intron 928914-929115 (orient:-) max_ev_support = 2 scaffold_10 - intron 928914-929115 asmbl_4014 scaffold_10 - retained_intron 928914-929115 asmbl_4013 // Exon Skipping and Retention # skipped_exon 974802-975513 (orient:-) max_ev_support = 2 # retained_exon 975308-975362 (orient:-) max_ev_support = 2 scaffold_10 - retained_exons 975308-975362 asmbl_4018,asmbl_4020,asmbl_4022,asmbl_4023 scaffold_10 - intron_skips_exon 974802-975513 asmbl_4019 // Exon Skipping and Retention # skipped_exon 976035-976826 (orient:-) max_ev_support = 1 # retained_exon 976258-976768 (orient:-) max_ev_support = 2 scaffold_10 - retained_exons 976258-976416,976506-976768 asmbl_4019,asmbl_4020 scaffold_10 - intron_skips_exon 976035-976826 asmbl_4023 // Retained and Spliced Intron # retained_intron 975363-975513 (orient:-) max_ev_support = 2 # spliced_intron 975363-975513 (orient:-) max_ev_support = 2 scaffold_10 - intron 975363-975513 asmbl_4018,asmbl_4020,asmbl_4022,asmbl_4023 scaffold_10 - retained_intron 975363-975513 asmbl_4021 // Retained and Spliced Intron # retained_intron 976769-976863 (orient:-) max_ev_support = 1 # spliced_intron 976769-976863 (orient:-) max_ev_support = 2 scaffold_10 - intron 976769-976863 asmbl_4019,asmbl_4020 scaffold_10 - retained_intron 976769-976863 asmbl_4022 // Exon Skipping and Retention # skipped_exon 986771-987975 (orient:-) max_ev_support = 1 # retained_exon 987263-987376 (orient:-) max_ev_support = 2 scaffold_10 - retained_exons 987263-987376 asmbl_4024,asmbl_4026 scaffold_10 - intron_skips_exon 986771-987975 asmbl_4025 // Retained and Spliced Intron # retained_intron 1076179-1076832 (orient:-) max_ev_support = 1 # spliced_intron 1076179-1076832 (orient:-) max_ev_support = 3 scaffold_10 - intron 1076179-1076832 asmbl_4043 scaffold_10 - retained_intron 1076179-1076832 asmbl_4044,asmbl_4045 // Exon Skipping and Retention # skipped_exon 1491398-1494142 (orient:-) max_ev_support = 2 # retained_exon 1492349-1492523 (orient:-) max_ev_support = 2 scaffold_10 - retained_exons 1492349-1492523 asmbl_4063 scaffold_10 - intron_skips_exon 1491398-1494142 asmbl_4064 // Exon Skipping and Retention # skipped_exon 1490744-1493412 (orient:-) max_ev_support = 1 # retained_exon 1492349-1492523 (orient:-) max_ev_support = 2 scaffold_10 - retained_exons 1492349-1492523 asmbl_4063 scaffold_10 - intron_skips_exon 1490744-1493412 asmbl_4067 // Exon Skipping and Retention # skipped_exon 1490744-1492348 (orient:-) max_ev_support = 2 # retained_exon 1491217-1491397 (orient:-) max_ev_support = 2 scaffold_10 - retained_exons 1491217-1491397 asmbl_4064 scaffold_10 - intron_skips_exon 1490744-1492348 asmbl_4063 // Exon Skipping and Retention # skipped_exon 1490744-1493412 (orient:-) max_ev_support = 1 # retained_exon 1491217-1491397 (orient:-) max_ev_support = 2 scaffold_10 - retained_exons 1491217-1491397 asmbl_4064 scaffold_10 - intron_skips_exon 1490744-1493412 asmbl_4067 // Exon Skipping and Retention # skipped_exon 1492524-1494142 (orient:-) max_ev_support = 2 # retained_exon 1493413-1493587 (orient:-) max_ev_support = 1 scaffold_10 - retained_exons 1493413-1493587 asmbl_4067 scaffold_10 - intron_skips_exon 1492524-1494142 asmbl_4063 // Exon Skipping and Retention # skipped_exon 1976147-1977391 (orient:-) max_ev_support = 2 # retained_exon 1976446-1976636 (orient:-) max_ev_support = 2 scaffold_10 - retained_exons 1976446-1976636 asmbl_4087 scaffold_10 - intron_skips_exon 1976147-1977391 asmbl_4088 // Retained and Spliced Intron # retained_intron 1980607-1981557 (orient:-) max_ev_support = 2 # spliced_intron 1980607-1981557 (orient:-) max_ev_support = 2 scaffold_10 - intron 1980607-1981557 asmbl_4090 scaffold_10 - retained_intron 1980607-1981557 asmbl_4091 // Exon Skipping and Retention # skipped_exon 2658614-2659095 (orient:-) max_ev_support = 3 # retained_exon 2658975-2658996 (orient:-) max_ev_support = 1 scaffold_10 - retained_exons 2658975-2658996 asmbl_4113 scaffold_10 - intron_skips_exon 2658614-2659095 asmbl_4112 // Retained and Spliced Intron # retained_intron 2787464-2787760 (orient:-) max_ev_support = 2 # spliced_intron 2787464-2787760 (orient:-) max_ev_support = 5 scaffold_10 - intron 2787464-2787760 asmbl_4131 scaffold_10 - retained_intron 2787464-2787760 asmbl_4133,asmbl_4134,asmbl_4136 // Retained and Spliced Intron # retained_intron 2787857-2787930 (orient:-) max_ev_support = 2 # spliced_intron 2787857-2787930 (orient:-) max_ev_support = 5 scaffold_10 - intron 2787857-2787930 asmbl_4131,asmbl_4134,asmbl_4136 scaffold_10 - retained_intron 2787857-2787930 asmbl_4133 // Retained and Spliced Intron # retained_intron 3062983-3063389 (orient:-) max_ev_support = 3 # spliced_intron 3062983-3063389 (orient:-) max_ev_support = 2 scaffold_10 - intron 3062983-3063389 asmbl_4154 scaffold_10 - retained_intron 3062983-3063389 asmbl_4153 // Retained and Spliced Intron # retained_intron 3063468-3063729 (orient:-) max_ev_support = 3 # spliced_intron 3063468-3063729 (orient:-) max_ev_support = 2 scaffold_10 - intron 3063468-3063729 asmbl_4154 scaffold_10 - retained_intron 3063468-3063729 asmbl_4153 // Retained and Spliced Intron # retained_intron 3065795-3065893 (orient:-) max_ev_support = 2 # spliced_intron 3065795-3065893 (orient:-) max_ev_support = 2 scaffold_10 - intron 3065795-3065893 asmbl_4156,asmbl_4160 scaffold_10 - retained_intron 3065795-3065893 asmbl_4155,asmbl_4158,asmbl_4159 // Exon Skipping and Retention # skipped_exon 3065795-3066072 (orient:-) max_ev_support = 2 # retained_exon 3065894-3065943 (orient:-) max_ev_support = 2 scaffold_10 - retained_exons 3065894-3065943 asmbl_4156 scaffold_10 - intron_skips_exon 3065795-3066072 asmbl_4157 // Retained and Spliced Intron # retained_intron 3065795-3066072 (orient:-) max_ev_support = 1 # spliced_intron 3065795-3066072 (orient:-) max_ev_support = 2 scaffold_10 - intron 3065795-3066072 asmbl_4157 scaffold_10 - retained_intron 3065795-3066072 asmbl_4158 // Retained and Spliced Intron # retained_intron 3065944-3066072 (orient:-) max_ev_support = 1 # spliced_intron 3065944-3066072 (orient:-) max_ev_support = 2 scaffold_10 - intron 3065944-3066072 asmbl_4155,asmbl_4156,asmbl_4159 scaffold_10 - retained_intron 3065944-3066072 asmbl_4158,asmbl_4160 // Retained and Spliced Intron # retained_intron 3129058-3129956 (orient:-) max_ev_support = 5 # spliced_intron 3129058-3129956 (orient:-) max_ev_support = 3 scaffold_10 - intron 3129058-3129956 asmbl_4167 scaffold_10 - retained_intron 3129058-3129956 asmbl_4166 // Retained and Spliced Intron # retained_intron 3129132-3129956 (orient:-) max_ev_support = 5 # spliced_intron 3129132-3129956 (orient:-) max_ev_support = 1 scaffold_10 - intron 3129132-3129956 asmbl_4168 scaffold_10 - retained_intron 3129132-3129956 asmbl_4166 // Retained and Spliced Intron # retained_intron 3439144-3439233 (orient:-) max_ev_support = 2 # spliced_intron 3439144-3439233 (orient:-) max_ev_support = 1 scaffold_10 - intron 3439144-3439233 asmbl_4211 scaffold_10 - retained_intron 3439144-3439233 asmbl_4210 // Retained and Spliced Intron # retained_intron 3758123-3758321 (orient:-) max_ev_support = 1 # spliced_intron 3758123-3758321 (orient:-) max_ev_support = 1 scaffold_10 - intron 3758123-3758321 asmbl_4221 scaffold_10 - retained_intron 3758123-3758321 asmbl_4219,asmbl_4220 // Retained and Spliced Intron # retained_intron 3757724-3757863 (orient:-) max_ev_support = 1 # spliced_intron 3757724-3757863 (orient:-) max_ev_support = 1 scaffold_10 - intron 3757724-3757863 asmbl_4219 scaffold_10 - retained_intron 3757724-3757863 asmbl_4220,asmbl_4221,asmbl_4222 // Retained and Spliced Intron # retained_intron 3794012-3794169 (orient:-) max_ev_support = 2 # spliced_intron 3794012-3794169 (orient:-) max_ev_support = 1 scaffold_10 - intron 3794012-3794169 asmbl_4232 scaffold_10 - retained_intron 3794012-3794169 asmbl_4230 // Retained and Spliced Intron # retained_intron 3928652-3928785 (orient:-) max_ev_support = 1 # spliced_intron 3928652-3928785 (orient:-) max_ev_support = 2 scaffold_10 - intron 3928652-3928785 asmbl_4240 scaffold_10 - retained_intron 3928652-3928785 asmbl_4242 // Retained and Spliced Intron # retained_intron 3928652-3928827 (orient:-) max_ev_support = 1 # spliced_intron 3928652-3928827 (orient:-) max_ev_support = 2 scaffold_10 - intron 3928652-3928827 asmbl_4241,asmbl_4246 scaffold_10 - retained_intron 3928652-3928827 asmbl_4242 // Retained and Spliced Intron # retained_intron 4057996-4058495 (orient:-) max_ev_support = 4 # spliced_intron 4057996-4058495 (orient:-) max_ev_support = 2 scaffold_10 - intron 4057996-4058495 asmbl_4252,asmbl_4255 scaffold_10 - retained_intron 4057996-4058495 asmbl_4251 // Retained and Spliced Intron # retained_intron 4058608-4058757 (orient:-) max_ev_support = 2 # spliced_intron 4058608-4058757 (orient:-) max_ev_support = 2 scaffold_10 - intron 4058608-4058757 asmbl_4254,asmbl_4255 scaffold_10 - retained_intron 4058608-4058757 asmbl_4251,asmbl_4253 // Retained and Spliced Intron # retained_intron 4058608-4058815 (orient:-) max_ev_support = 2 # spliced_intron 4058608-4058815 (orient:-) max_ev_support = 2 scaffold_10 - intron 4058608-4058815 asmbl_4252,asmbl_4256 scaffold_10 - retained_intron 4058608-4058815 asmbl_4251,asmbl_4253 // Exon Skipping and Retention # skipped_exon 4057467-4058495 (orient:-) max_ev_support = 2 # retained_exon 4057952-4057995 (orient:-) max_ev_support = 2 scaffold_10 - retained_exons 4057952-4057995 asmbl_4252,asmbl_4255 scaffold_10 - intron_skips_exon 4057467-4058495 asmbl_4253,asmbl_4254,asmbl_4256 // Exon Skipping and Retention # skipped_exon 4130696-4132212 (orient:-) max_ev_support = 2 # retained_exon 4131738-4131755 (orient:-) max_ev_support = 2 scaffold_10 - retained_exons 4131738-4131755 asmbl_4261 scaffold_10 - intron_skips_exon 4130696-4132212 asmbl_4260,asmbl_4262 // Retained and Spliced Intron # retained_intron 4149920-4150006 (orient:-) max_ev_support = 3 # spliced_intron 4149920-4150006 (orient:-) max_ev_support = 1 scaffold_10 - intron 4149920-4150006 asmbl_4267 scaffold_10 - retained_intron 4149920-4150006 asmbl_4265 // Exon Skipping and Retention # skipped_exon 4158723-4159782 (orient:-) max_ev_support = 2 # retained_exon 4159534-4159648 (orient:-) max_ev_support = 2 scaffold_10 - retained_exons 4159534-4159648 asmbl_4269,asmbl_4271 scaffold_10 - intron_skips_exon 4158723-4159782 asmbl_4268 // Retained and Spliced Intron # retained_intron 4159649-4159782 (orient:-) max_ev_support = 1 # spliced_intron 4159649-4159782 (orient:-) max_ev_support = 2 scaffold_10 - intron 4159649-4159782 asmbl_4269,asmbl_4271 scaffold_10 - retained_intron 4159649-4159782 asmbl_4270 // Exon Skipping and Retention # skipped_exon 4214570-4216360 (orient:-) max_ev_support = 1 # retained_exon 4215034-4215199 (orient:-) max_ev_support = 2 scaffold_10 - retained_exons 4215034-4215199 asmbl_4272 scaffold_10 - intron_skips_exon 4214570-4216360 asmbl_4273 // Exon Skipping and Retention # skipped_exon 4335933-4337947 (orient:-) max_ev_support = 2 # retained_exon 4336877-4336915 (orient:-) max_ev_support = 2 scaffold_10 - retained_exons 4336877-4336915 asmbl_4285 scaffold_10 - intron_skips_exon 4335933-4337947 asmbl_4286 // Retained and Spliced Intron # retained_intron 4524826-4524957 (orient:-) max_ev_support = 1 # spliced_intron 4524826-4524957 (orient:-) max_ev_support = 1 scaffold_10 - intron 4524826-4524957 asmbl_4296 scaffold_10 - retained_intron 4524826-4524957 asmbl_4297 // Retained and Spliced Intron # retained_intron 4715798-4715921 (orient:-) max_ev_support = 1 # spliced_intron 4715798-4715921 (orient:-) max_ev_support = 2 scaffold_10 - intron 4715798-4715921 asmbl_4307 scaffold_10 - retained_intron 4715798-4715921 asmbl_4308 // Retained and Spliced Intron # retained_intron 4715798-4715969 (orient:-) max_ev_support = 1 # spliced_intron 4715798-4715969 (orient:-) max_ev_support = 1 scaffold_10 - intron 4715798-4715969 asmbl_4309 scaffold_10 - retained_intron 4715798-4715969 asmbl_4308 // Retained and Spliced Intron # retained_intron 5006392-5006680 (orient:-) max_ev_support = 3 # spliced_intron 5006392-5006680 (orient:-) max_ev_support = 2 scaffold_10 - intron 5006392-5006680 asmbl_4329,asmbl_4331 scaffold_10 - retained_intron 5006392-5006680 asmbl_4328,asmbl_4330 // Retained and Spliced Intron # retained_intron 5006780-5006917 (orient:-) max_ev_support = 1 # spliced_intron 5006780-5006917 (orient:-) max_ev_support = 3 scaffold_10 - intron 5006780-5006917 asmbl_4328,asmbl_4329,asmbl_4331 scaffold_10 - retained_intron 5006780-5006917 asmbl_4330 // Retained and Spliced Intron # retained_intron 5010430-5010561 (orient:-) max_ev_support = 2 # spliced_intron 5010430-5010561 (orient:-) max_ev_support = 1 scaffold_10 - intron 5010430-5010561 asmbl_4335 scaffold_10 - retained_intron 5010430-5010561 asmbl_4333 // Retained and Spliced Intron # retained_intron 5010843-5010929 (orient:-) max_ev_support = 2 # spliced_intron 5010843-5010929 (orient:-) max_ev_support = 1 scaffold_10 - intron 5010843-5010929 asmbl_4335 scaffold_10 - retained_intron 5010843-5010929 asmbl_4334 // Exon Skipping and Retention # skipped_exon 5009911-5010561 (orient:-) max_ev_support = 2 # retained_exon 5010325-5010429 (orient:-) max_ev_support = 1 scaffold_10 - retained_exons 5010325-5010429 asmbl_4335 scaffold_10 - intron_skips_exon 5009911-5010561 asmbl_4332 // Retained and Spliced Intron # retained_intron 5200830-5200903 (orient:-) max_ev_support = 2 # spliced_intron 5200830-5200903 (orient:-) max_ev_support = 2 scaffold_10 - intron 5200830-5200903 asmbl_4346 scaffold_10 - retained_intron 5200830-5200903 asmbl_4345,asmbl_4347 // Retained and Spliced Intron # retained_intron 5200984-5201075 (orient:-) max_ev_support = 1 # spliced_intron 5200984-5201075 (orient:-) max_ev_support = 2 scaffold_10 - intron 5200984-5201075 asmbl_4345,asmbl_4346 scaffold_10 - retained_intron 5200984-5201075 asmbl_4347 // Exon Skipping and Retention # skipped_exon 5258965-5259330 (orient:-) max_ev_support = 2 # retained_exon 5259104-5259245 (orient:-) max_ev_support = 2 scaffold_10 - retained_exons 5259104-5259245 asmbl_4351 scaffold_10 - intron_skips_exon 5258965-5259330 asmbl_4352 // Exon Skipping and Retention # skipped_exon 5392562-5395407 (orient:-) max_ev_support = 1 # retained_exon 5393824-5393937 (orient:-) max_ev_support = 3 scaffold_10 - retained_exons 5393824-5393937 asmbl_4357,asmbl_4358 scaffold_10 - intron_skips_exon 5392562-5395407 asmbl_4362 // Retained and Spliced Intron # retained_intron 5535601-5535697 (orient:-) max_ev_support = 2 # spliced_intron 5535601-5535697 (orient:-) max_ev_support = 1 scaffold_10 - intron 5535601-5535697 asmbl_4371 scaffold_10 - retained_intron 5535601-5535697 asmbl_4370 // Exon Skipping and Retention # skipped_exon 5750331-5751625 (orient:-) max_ev_support = 1 # retained_exon 5751001-5751048 (orient:-) max_ev_support = 2 scaffold_10 - retained_exons 5751001-5751048 asmbl_4380 scaffold_10 - intron_skips_exon 5750331-5751625 asmbl_4382 // Exon Skipping and Retention # skipped_exon 5848183-5849222 (orient:-) max_ev_support = 1 # retained_exon 5848545-5848715 (orient:-) max_ev_support = 3 scaffold_10 - retained_exons 5848545-5848715 asmbl_4389,asmbl_4390 scaffold_10 - intron_skips_exon 5848183-5849222 asmbl_4391 // Retained and Spliced Intron # retained_intron 5849287-5849521 (orient:-) max_ev_support = 2 # spliced_intron 5849287-5849521 (orient:-) max_ev_support = 2 scaffold_10 - intron 5849287-5849521 asmbl_4389 scaffold_10 - retained_intron 5849287-5849521 asmbl_4390,asmbl_4391 // Retained and Spliced Intron # retained_intron 5856417-5856955 (orient:-) max_ev_support = 2 # spliced_intron 5856417-5856955 (orient:-) max_ev_support = 2 scaffold_10 - intron 5856417-5856955 asmbl_4398,asmbl_4400,asmbl_4401 scaffold_10 - retained_intron 5856417-5856955 asmbl_4393 // Retained and Spliced Intron # retained_intron 5856417-5857533 (orient:-) max_ev_support = 2 # spliced_intron 5856417-5857533 (orient:-) max_ev_support = 1 scaffold_10 - intron 5856417-5857533 asmbl_4399 scaffold_10 - retained_intron 5856417-5857533 asmbl_4393 // Retained and Spliced Intron # retained_intron 5857032-5858338 (orient:-) max_ev_support = 4 # spliced_intron 5857032-5858338 (orient:-) max_ev_support = 2 scaffold_10 - intron 5857032-5858338 asmbl_4398,asmbl_4400,asmbl_4401 scaffold_10 - retained_intron 5857032-5858338 asmbl_4393 // Retained and Spliced Intron # retained_intron 5857610-5858338 (orient:-) max_ev_support = 4 # spliced_intron 5857610-5858338 (orient:-) max_ev_support = 1 scaffold_10 - intron 5857610-5858338 asmbl_4399 scaffold_10 - retained_intron 5857610-5858338 asmbl_4393 // Retained and Spliced Intron # retained_intron 5862111-5862269 (orient:-) max_ev_support = 2 # spliced_intron 5862111-5862269 (orient:-) max_ev_support = 2 scaffold_10 - intron 5862111-5862269 asmbl_4395,asmbl_4401 scaffold_10 - retained_intron 5862111-5862269 asmbl_4396,asmbl_4400 // Exon Skipping and Retention # skipped_exon 5856417-5857533 (orient:-) max_ev_support = 1 # retained_exon 5856956-5857031 (orient:-) max_ev_support = 2 scaffold_10 - retained_exons 5856956-5857031 asmbl_4398,asmbl_4400,asmbl_4401 scaffold_10 - intron_skips_exon 5856417-5857533 asmbl_4399 // Exon Skipping and Retention # skipped_exon 5857032-5858338 (orient:-) max_ev_support = 2 # retained_exon 5857534-5857609 (orient:-) max_ev_support = 1 scaffold_10 - retained_exons 5857534-5857609 asmbl_4399 scaffold_10 - intron_skips_exon 5857032-5858338 asmbl_4398,asmbl_4400,asmbl_4401 // Retained and Spliced Intron # retained_intron 5866632-5866731 (orient:-) max_ev_support = 2 # spliced_intron 5866632-5866731 (orient:-) max_ev_support = 3 scaffold_10 - intron 5866632-5866731 asmbl_4402 scaffold_10 - retained_intron 5866632-5866731 asmbl_4403 // Exon Skipping and Retention # skipped_exon 6017831-6018837 (orient:-) max_ev_support = 1 # retained_exon 6018625-6018719 (orient:-) max_ev_support = 2 scaffold_10 - retained_exons 6018625-6018719 asmbl_4416 scaffold_10 - intron_skips_exon 6017831-6018837 asmbl_4417 // Exon Skipping and Retention # skipped_exon 6017831-6019242 (orient:-) max_ev_support = 1 # retained_exon 6018625-6018961 (orient:-) max_ev_support = 2 scaffold_10 - retained_exons 6018625-6018719,6018838-6018961 asmbl_4416 scaffold_10 - intron_skips_exon 6017831-6019242 asmbl_4418 // Retained and Spliced Intron # retained_intron 6077386-6078828 (orient:-) max_ev_support = 4 # spliced_intron 6077386-6078828 (orient:-) max_ev_support = 1 scaffold_10 - intron 6077386-6078828 asmbl_4431 scaffold_10 - retained_intron 6077386-6078828 asmbl_4422,asmbl_4423 // Retained and Spliced Intron # retained_intron 6075638-6075745 (orient:-) max_ev_support = 1 # spliced_intron 6075638-6075745 (orient:-) max_ev_support = 2 scaffold_10 - intron 6075638-6075745 asmbl_4422 scaffold_10 - retained_intron 6075638-6075745 asmbl_4423,asmbl_4425,asmbl_4426,asmbl_4427,asmbl_4428,asmbl_4429,asmbl_4431,asmbl_4432 // Retained and Spliced Intron # retained_intron 6071958-6072084 (orient:-) max_ev_support = 2 # spliced_intron 6071958-6072084 (orient:-) max_ev_support = 2 scaffold_10 - intron 6071958-6072084 asmbl_4422,asmbl_4423,asmbl_4425,asmbl_4426,asmbl_4427,asmbl_4429,asmbl_4431,asmbl_4432 scaffold_10 - retained_intron 6071958-6072084 asmbl_4424,asmbl_4428 // Retained and Spliced Intron # retained_intron 6070501-6070618 (orient:-) max_ev_support = 1 # spliced_intron 6070501-6070618 (orient:-) max_ev_support = 2 scaffold_10 - intron 6070501-6070618 asmbl_4422,asmbl_4423,asmbl_4426,asmbl_4427,asmbl_4428,asmbl_4431 scaffold_10 - retained_intron 6070501-6070618 asmbl_4425,asmbl_4429,asmbl_4430 // Retained and Spliced Intron # retained_intron 6074390-6075518 (orient:-) max_ev_support = 1 # spliced_intron 6074390-6075518 (orient:-) max_ev_support = 2 scaffold_10 - intron 6074390-6075518 asmbl_4422,asmbl_4423,asmbl_4427,asmbl_4428,asmbl_4429,asmbl_4431 scaffold_10 - retained_intron 6074390-6075518 asmbl_4425,asmbl_4426 // Retained and Spliced Intron # retained_intron 6075361-6075518 (orient:-) max_ev_support = 1 # spliced_intron 6075361-6075518 (orient:-) max_ev_support = 1 scaffold_10 - intron 6075361-6075518 asmbl_4432 scaffold_10 - retained_intron 6075361-6075518 asmbl_4425,asmbl_4426 // Retained and Spliced Intron # retained_intron 6447456-6447566 (orient:-) max_ev_support = 1 # spliced_intron 6447456-6447566 (orient:-) max_ev_support = 1 scaffold_10 - intron 6447456-6447566 asmbl_4459 scaffold_10 - retained_intron 6447456-6447566 asmbl_4458,asmbl_4460 // Retained and Spliced Intron # retained_intron 6466373-6466479 (orient:-) max_ev_support = 1 # spliced_intron 6466373-6466479 (orient:-) max_ev_support = 1 scaffold_10 - intron 6466373-6466479 asmbl_4466,asmbl_4467,asmbl_4468,asmbl_4469 scaffold_10 - retained_intron 6466373-6466479 asmbl_4464,asmbl_4465 // Retained and Spliced Intron # retained_intron 6467752-6468715 (orient:-) max_ev_support = 1 # spliced_intron 6467752-6468715 (orient:-) max_ev_support = 1 scaffold_10 - intron 6467752-6468715 asmbl_4464,asmbl_4465,asmbl_4467,asmbl_4469 scaffold_10 - retained_intron 6467752-6468715 asmbl_4466,asmbl_4468 // Exon Skipping and Retention # skipped_exon 6598282-6598969 (orient:-) max_ev_support = 1 # retained_exon 6598566-6598635 (orient:-) max_ev_support = 2 scaffold_10 - retained_exons 6598566-6598635 asmbl_4477,asmbl_4479 scaffold_10 - intron_skips_exon 6598282-6598969 asmbl_4478 // Exon Skipping and Retention # skipped_exon 6598053-6598565 (orient:-) max_ev_support = 2 # retained_exon 6598212-6598281 (orient:-) max_ev_support = 1 scaffold_10 - retained_exons 6598212-6598281 asmbl_4478 scaffold_10 - intron_skips_exon 6598053-6598565 asmbl_4477,asmbl_4479 // Exon Skipping and Retention # skipped_exon 6674039-6675082 (orient:-) max_ev_support = 1 # retained_exon 6674432-6674521 (orient:-) max_ev_support = 1 scaffold_10 - retained_exons 6674432-6674521 asmbl_4488 scaffold_10 - intron_skips_exon 6674039-6675082 asmbl_4487 // Exon Skipping and Retention # skipped_exon 6672572-6673240 (orient:-) max_ev_support = 1 # retained_exon 6673015-6673106 (orient:-) max_ev_support = 1 scaffold_10 - retained_exons 6673015-6673106 asmbl_4489 scaffold_10 - intron_skips_exon 6672572-6673240 asmbl_4487,asmbl_4488 // Exon Skipping and Retention # skipped_exon 6705691-6706060 (orient:-) max_ev_support = 2 # retained_exon 6705881-6705953 (orient:-) max_ev_support = 2 scaffold_10 - retained_exons 6705881-6705953 asmbl_4494 scaffold_10 - intron_skips_exon 6705691-6706060 asmbl_4493 // Retained and Spliced Intron # retained_intron 6757359-6757457 (orient:-) max_ev_support = 1 # spliced_intron 6757359-6757457 (orient:-) max_ev_support = 2 scaffold_10 - intron 6757359-6757457 asmbl_4500 scaffold_10 - retained_intron 6757359-6757457 asmbl_4501 // Retained and Spliced Intron # retained_intron 6867580-6867771 (orient:-) max_ev_support = 1 # spliced_intron 6867580-6867771 (orient:-) max_ev_support = 1 scaffold_10 - intron 6867580-6867771 asmbl_4510,asmbl_4511 scaffold_10 - retained_intron 6867580-6867771 asmbl_4508 // Retained and Spliced Intron # retained_intron 6867580-6867786 (orient:-) max_ev_support = 1 # spliced_intron 6867580-6867786 (orient:-) max_ev_support = 2 scaffold_10 - intron 6867580-6867786 asmbl_4506,asmbl_4509,asmbl_4512 scaffold_10 - retained_intron 6867580-6867786 asmbl_4508 // Retained and Spliced Intron # retained_intron 6869034-6869156 (orient:-) max_ev_support = 1 # spliced_intron 6869034-6869156 (orient:-) max_ev_support = 2 scaffold_10 - intron 6869034-6869156 asmbl_4506,asmbl_4507,asmbl_4508,asmbl_4510,asmbl_4511,asmbl_4512 scaffold_10 - retained_intron 6869034-6869156 asmbl_4509 // Retained and Spliced Intron # retained_intron 6871848-6872357 (orient:-) max_ev_support = 1 # spliced_intron 6871848-6872357 (orient:-) max_ev_support = 2 scaffold_10 - intron 6871848-6872357 asmbl_4506,asmbl_4508,asmbl_4509,asmbl_4511 scaffold_10 - retained_intron 6871848-6872357 asmbl_4510,asmbl_4512 // Exon Skipping and Retention # skipped_exon 7250455-7252650 (orient:-) max_ev_support = 3 # retained_exon 7250740-7252303 (orient:-) max_ev_support = 2 scaffold_10 - retained_exons 7250740-7250778,7251667-7251699,7252256-7252303 asmbl_4532,asmbl_4534 scaffold_10 - intron_skips_exon 7250455-7252650 asmbl_4531,asmbl_4535 // Retained and Spliced Intron # retained_intron 7278809-7278908 (orient:-) max_ev_support = 1 # spliced_intron 7278809-7278908 (orient:-) max_ev_support = 1 scaffold_10 - intron 7278809-7278908 asmbl_4538,asmbl_4540 scaffold_10 - retained_intron 7278809-7278908 asmbl_4539 // Retained and Spliced Intron # retained_intron 7282966-7283052 (orient:-) max_ev_support = 1 # spliced_intron 7282966-7283052 (orient:-) max_ev_support = 3 scaffold_10 - intron 7282966-7283052 asmbl_4541,asmbl_4542 scaffold_10 - retained_intron 7282966-7283052 asmbl_4544 // Retained and Spliced Intron # retained_intron 7765135-7765301 (orient:-) max_ev_support = 1 # spliced_intron 7765135-7765301 (orient:-) max_ev_support = 2 scaffold_10 - intron 7765135-7765301 asmbl_4550,asmbl_4551 scaffold_10 - retained_intron 7765135-7765301 asmbl_4552 // Exon Skipping and Retention # skipped_exon 7796671-7799332 (orient:-) max_ev_support = 1 # retained_exon 7797564-7797608 (orient:-) max_ev_support = 2 scaffold_10 - retained_exons 7797564-7797608 asmbl_4555,asmbl_4556 scaffold_10 - intron_skips_exon 7796671-7799332 asmbl_4557 // Retained and Spliced Intron # retained_intron 7827883-7827959 (orient:-) max_ev_support = 2 # spliced_intron 7827883-7827959 (orient:-) max_ev_support = 2 scaffold_10 - intron 7827883-7827959 asmbl_4562 scaffold_10 - retained_intron 7827883-7827959 asmbl_4563 // Retained and Spliced Intron # retained_intron 8319997-8320745 (orient:-) max_ev_support = 1 # spliced_intron 8319997-8320745 (orient:-) max_ev_support = 1 scaffold_10 - intron 8319997-8320745 asmbl_4573 scaffold_10 - retained_intron 8319997-8320745 asmbl_4574 // Retained and Spliced Intron # retained_intron 8329038-8329329 (orient:-) max_ev_support = 2 # spliced_intron 8329038-8329329 (orient:-) max_ev_support = 3 scaffold_10 - intron 8329038-8329329 asmbl_4577,asmbl_4581,asmbl_4582,asmbl_4583,asmbl_4584 scaffold_10 - retained_intron 8329038-8329329 asmbl_4578 // Retained and Spliced Intron # retained_intron 8331786-8331992 (orient:-) max_ev_support = 1 # spliced_intron 8331786-8331992 (orient:-) max_ev_support = 1 scaffold_10 - intron 8331786-8331992 asmbl_4584 scaffold_10 - retained_intron 8331786-8331992 asmbl_4583 // Retained and Spliced Intron # retained_intron 8331786-8332060 (orient:-) max_ev_support = 1 # spliced_intron 8331786-8332060 (orient:-) max_ev_support = 3 scaffold_10 - intron 8331786-8332060 asmbl_4577,asmbl_4579,asmbl_4580 scaffold_10 - retained_intron 8331786-8332060 asmbl_4583 // Retained and Spliced Intron # retained_intron 8330959-8331706 (orient:-) max_ev_support = 1 # spliced_intron 8330959-8331706 (orient:-) max_ev_support = 3 scaffold_10 - intron 8330959-8331706 asmbl_4577,asmbl_4579,asmbl_4580,asmbl_4583 scaffold_10 - retained_intron 8330959-8331706 asmbl_4584 // Retained and Spliced Intron # retained_intron 8492106-8492342 (orient:-) max_ev_support = 1 # spliced_intron 8492106-8492342 (orient:-) max_ev_support = 2 scaffold_10 - intron 8492106-8492342 asmbl_4594 scaffold_10 - retained_intron 8492106-8492342 asmbl_4595,asmbl_4596 // Retained and Spliced Intron # retained_intron 8897211-8897475 (orient:-) max_ev_support = 2 # spliced_intron 8897211-8897475 (orient:-) max_ev_support = 1 scaffold_10 - intron 8897211-8897475 asmbl_4621,asmbl_4633 scaffold_10 - retained_intron 8897211-8897475 asmbl_4620 // Retained and Spliced Intron # retained_intron 8897219-8897475 (orient:-) max_ev_support = 2 # spliced_intron 8897219-8897475 (orient:-) max_ev_support = 2 scaffold_10 - intron 8897219-8897475 asmbl_4622,asmbl_4623,asmbl_4624,asmbl_4625,asmbl_4627,asmbl_4628,asmbl_4629,asmbl_4631 scaffold_10 - retained_intron 8897219-8897475 asmbl_4620 // Retained and Spliced Intron # retained_intron 8897245-8897475 (orient:-) max_ev_support = 2 # spliced_intron 8897245-8897475 (orient:-) max_ev_support = 1 scaffold_10 - intron 8897245-8897475 asmbl_4626,asmbl_4632 scaffold_10 - retained_intron 8897245-8897475 asmbl_4620 // Retained and Spliced Intron # retained_intron 8898870-8899178 (orient:-) max_ev_support = 2 # spliced_intron 8898870-8899178 (orient:-) max_ev_support = 2 scaffold_10 - intron 8898870-8899178 asmbl_4622,asmbl_4623,asmbl_4624,asmbl_4625,asmbl_4626,asmbl_4627,asmbl_4628,asmbl_4629,asmbl_4631,asmbl_4632,asmbl_4633 scaffold_10 - retained_intron 8898870-8899178 asmbl_4621 // Retained and Spliced Intron # retained_intron 8895156-8895317 (orient:-) max_ev_support = 1 # spliced_intron 8895156-8895317 (orient:-) max_ev_support = 2 scaffold_10 - intron 8895156-8895317 asmbl_4621,asmbl_4622,asmbl_4624,asmbl_4626,asmbl_4627,asmbl_4628,asmbl_4629,asmbl_4631,asmbl_4632,asmbl_4633 scaffold_10 - retained_intron 8895156-8895317 asmbl_4623,asmbl_4625 // Retained and Spliced Intron # retained_intron 8896936-8897048 (orient:-) max_ev_support = 1 # spliced_intron 8896936-8897048 (orient:-) max_ev_support = 2 scaffold_10 - intron 8896936-8897048 asmbl_4621,asmbl_4622,asmbl_4625,asmbl_4626,asmbl_4628,asmbl_4629,asmbl_4632,asmbl_4633 scaffold_10 - retained_intron 8896936-8897048 asmbl_4623,asmbl_4624,asmbl_4627,asmbl_4631 // Retained and Spliced Intron # retained_intron 8895840-8895918 (orient:-) max_ev_support = 1 # spliced_intron 8895840-8895918 (orient:-) max_ev_support = 2 scaffold_10 - intron 8895840-8895918 asmbl_4621,asmbl_4622,asmbl_4623,asmbl_4625,asmbl_4626,asmbl_4627,asmbl_4629,asmbl_4631,asmbl_4632 scaffold_10 - retained_intron 8895840-8895918 asmbl_4624,asmbl_4628,asmbl_4633 // Retained and Spliced Intron # retained_intron 8897598-8897769 (orient:-) max_ev_support = 1 # spliced_intron 8897598-8897769 (orient:-) max_ev_support = 2 scaffold_10 - intron 8897598-8897769 asmbl_4621,asmbl_4622,asmbl_4623,asmbl_4624,asmbl_4625,asmbl_4627,asmbl_4628,asmbl_4629,asmbl_4631,asmbl_4632,asmbl_4633 scaffold_10 - retained_intron 8897598-8897769 asmbl_4626 // Retained and Spliced Intron # retained_intron 8896299-8896584 (orient:-) max_ev_support = 1 # spliced_intron 8896299-8896584 (orient:-) max_ev_support = 2 scaffold_10 - intron 8896299-8896584 asmbl_4621,asmbl_4622,asmbl_4623,asmbl_4624,asmbl_4625,asmbl_4626,asmbl_4628,asmbl_4631,asmbl_4632,asmbl_4633 scaffold_10 - retained_intron 8896299-8896584 asmbl_4627,asmbl_4629 // Retained and Spliced Intron # retained_intron 8894175-8894277 (orient:-) max_ev_support = 1 # spliced_intron 8894175-8894277 (orient:-) max_ev_support = 2 scaffold_10 - intron 8894175-8894277 asmbl_4622,asmbl_4623,asmbl_4624,asmbl_4625,asmbl_4626,asmbl_4627,asmbl_4628,asmbl_4629,asmbl_4631,asmbl_4632 scaffold_10 - retained_intron 8894175-8894277 asmbl_4630 // Retained and Spliced Intron # retained_intron 8894400-8894642 (orient:-) max_ev_support = 1 # spliced_intron 8894400-8894642 (orient:-) max_ev_support = 2 scaffold_10 - intron 8894400-8894642 asmbl_4621,asmbl_4622,asmbl_4623,asmbl_4624,asmbl_4625,asmbl_4626,asmbl_4627,asmbl_4628,asmbl_4629,asmbl_4631,asmbl_4632,asmbl_4633 scaffold_10 - retained_intron 8894400-8894642 asmbl_4630 // Retained and Spliced Intron # retained_intron 8900622-8900805 (orient:-) max_ev_support = 1 # spliced_intron 8900622-8900805 (orient:-) max_ev_support = 1 scaffold_10 - intron 8900622-8900805 asmbl_4636 scaffold_10 - retained_intron 8900622-8900805 asmbl_4635 // Retained and Spliced Intron # retained_intron 8901030-8901211 (orient:-) max_ev_support = 1 # spliced_intron 8901030-8901211 (orient:-) max_ev_support = 1 scaffold_10 - intron 8901030-8901211 asmbl_4636 scaffold_10 - retained_intron 8901030-8901211 asmbl_4635 // Retained and Spliced Intron # retained_intron 8905016-8905140 (orient:-) max_ev_support = 1 # spliced_intron 8905016-8905140 (orient:-) max_ev_support = 2 scaffold_10 - intron 8905016-8905140 asmbl_4641,asmbl_4642 scaffold_10 - retained_intron 8905016-8905140 asmbl_4643 // Retained and Spliced Intron # retained_intron 9043353-9045014 (orient:-) max_ev_support = 3 # spliced_intron 9043353-9045014 (orient:-) max_ev_support = 4 scaffold_10 - intron 9043353-9045014 asmbl_4658 scaffold_10 - retained_intron 9043353-9045014 asmbl_4659 // Exon Skipping and Retention # skipped_exon 9060945-9062853 (orient:-) max_ev_support = 2 # retained_exon 9061441-9061569 (orient:-) max_ev_support = 2 scaffold_10 - retained_exons 9061441-9061569 asmbl_4666 scaffold_10 - intron_skips_exon 9060945-9062853 asmbl_4662 // Retained and Spliced Intron # retained_intron 9060945-9061043 (orient:-) max_ev_support = 1 # spliced_intron 9060945-9061043 (orient:-) max_ev_support = 2 scaffold_10 - intron 9060945-9061043 asmbl_4668 scaffold_10 - retained_intron 9060945-9061043 asmbl_4670 // Retained and Spliced Intron # retained_intron 10283622-10283975 (orient:-) max_ev_support = 3 # spliced_intron 10283622-10283975 (orient:-) max_ev_support = 1 scaffold_10 - intron 10283622-10283975 asmbl_4716 scaffold_10 - retained_intron 10283622-10283975 asmbl_4712 // Retained and Spliced Intron # retained_intron 10283708-10283975 (orient:-) max_ev_support = 3 # spliced_intron 10283708-10283975 (orient:-) max_ev_support = 1 scaffold_10 - intron 10283708-10283975 asmbl_4717 scaffold_10 - retained_intron 10283708-10283975 asmbl_4712 // Retained and Spliced Intron # retained_intron 10324675-10324702 (orient:-) max_ev_support = 1 # spliced_intron 10324675-10324702 (orient:-) max_ev_support = 1 scaffold_10 - intron 10324675-10324702 asmbl_4725 scaffold_10 - retained_intron 10324675-10324702 asmbl_4724 // Exon Skipping and Retention # skipped_exon 10641555-10642467 (orient:-) max_ev_support = 1 # retained_exon 10641909-10642036 (orient:-) max_ev_support = 1 scaffold_10 - retained_exons 10641909-10642036 asmbl_4754 scaffold_10 - intron_skips_exon 10641555-10642467 asmbl_4753 // Retained and Spliced Intron # retained_intron 11911250-11911410 (orient:-) max_ev_support = 4 # spliced_intron 11911250-11911410 (orient:-) max_ev_support = 2 scaffold_10 - intron 11911250-11911410 asmbl_4799,asmbl_4800 scaffold_10 - retained_intron 11911250-11911410 asmbl_4797,asmbl_4798 // Retained and Spliced Intron # retained_intron 11917146-11917229 (orient:-) max_ev_support = 1 # spliced_intron 11917146-11917229 (orient:-) max_ev_support = 2 scaffold_10 - intron 11917146-11917229 asmbl_4801,asmbl_4803 scaffold_10 - retained_intron 11917146-11917229 asmbl_4802 // Retained and Spliced Intron # retained_intron 12840971-12841059 (orient:-) max_ev_support = 1 # spliced_intron 12840971-12841059 (orient:-) max_ev_support = 2 scaffold_10 - intron 12840971-12841059 asmbl_4830 scaffold_10 - retained_intron 12840971-12841059 asmbl_4831 // Exon Skipping and Retention # skipped_exon 12856613-12857353 (orient:-) max_ev_support = 1 # retained_exon 12856951-12857039 (orient:-) max_ev_support = 1 scaffold_10 - retained_exons 12856951-12857039 asmbl_4833 scaffold_10 - intron_skips_exon 12856613-12857353 asmbl_4834 // Retained and Spliced Intron # retained_intron 12895006-12895119 (orient:-) max_ev_support = 1 # spliced_intron 12895006-12895119 (orient:-) max_ev_support = 2 scaffold_10 - intron 12895006-12895119 asmbl_4837,asmbl_4839 scaffold_10 - retained_intron 12895006-12895119 asmbl_4838 // Retained and Spliced Intron # retained_intron 12895228-12895356 (orient:-) max_ev_support = 1 # spliced_intron 12895228-12895356 (orient:-) max_ev_support = 2 scaffold_10 - intron 12895228-12895356 asmbl_4837,asmbl_4839 scaffold_10 - retained_intron 12895228-12895356 asmbl_4838 // Exon Skipping and Retention # skipped_exon 12898265-12898915 (orient:-) max_ev_support = 2 # retained_exon 12898797-12898824 (orient:-) max_ev_support = 1 scaffold_10 - retained_exons 12898797-12898824 asmbl_4839 scaffold_10 - intron_skips_exon 12898265-12898915 asmbl_4837,asmbl_4841,asmbl_4842 // Retained and Spliced Intron # retained_intron 13000440-13000630 (orient:-) max_ev_support = 1 # spliced_intron 13000440-13000630 (orient:-) max_ev_support = 3 scaffold_10 - intron 13000440-13000630 asmbl_4845 scaffold_10 - retained_intron 13000440-13000630 asmbl_4846 // Retained and Spliced Intron # retained_intron 13282361-13283064 (orient:-) max_ev_support = 7 # spliced_intron 13282361-13283064 (orient:-) max_ev_support = 1 scaffold_10 - intron 13282361-13283064 asmbl_4866 scaffold_10 - retained_intron 13282361-13283064 asmbl_4864 // Retained and Spliced Intron # retained_intron 13282361-13283807 (orient:-) max_ev_support = 7 # spliced_intron 13282361-13283807 (orient:-) max_ev_support = 1 scaffold_10 - intron 13282361-13283807 asmbl_4865 scaffold_10 - retained_intron 13282361-13283807 asmbl_4864 // Exon Skipping and Retention # skipped_exon 13284018-13285767 (orient:-) max_ev_support = 2 # retained_exon 13285342-13285507 (orient:-) max_ev_support = 1 scaffold_10 - retained_exons 13285342-13285507 asmbl_4870 scaffold_10 - intron_skips_exon 13284018-13285767 asmbl_4864,asmbl_4865,asmbl_4871 // Exon Skipping and Retention # skipped_exon 13285861-13288149 (orient:-) max_ev_support = 2 # retained_exon 13286680-13286774 (orient:-) max_ev_support = 1 scaffold_10 - retained_exons 13286680-13286774 asmbl_4871 scaffold_10 - intron_skips_exon 13285861-13288149 asmbl_4864,asmbl_4865,asmbl_4870 // Retained and Spliced Intron # retained_intron 13458240-13458388 (orient:-) max_ev_support = 2 # spliced_intron 13458240-13458388 (orient:-) max_ev_support = 1 scaffold_10 - intron 13458240-13458388 asmbl_4882 scaffold_10 - retained_intron 13458240-13458388 asmbl_4881 // Retained and Spliced Intron # retained_intron 13458298-13458388 (orient:-) max_ev_support = 2 # spliced_intron 13458298-13458388 (orient:-) max_ev_support = 2 scaffold_10 - intron 13458298-13458388 asmbl_4880 scaffold_10 - retained_intron 13458298-13458388 asmbl_4881 // Retained and Spliced Intron # retained_intron 13471231-13471345 (orient:-) max_ev_support = 3 # spliced_intron 13471231-13471345 (orient:-) max_ev_support = 2 scaffold_10 - intron 13471231-13471345 asmbl_4885,asmbl_4886,asmbl_4889,asmbl_4890 scaffold_10 - retained_intron 13471231-13471345 asmbl_4884,asmbl_4888 // Retained and Spliced Intron # retained_intron 13471381-13471638 (orient:-) max_ev_support = 3 # spliced_intron 13471381-13471638 (orient:-) max_ev_support = 2 scaffold_10 - intron 13471381-13471638 asmbl_4885,asmbl_4886,asmbl_4888,asmbl_4890 scaffold_10 - retained_intron 13471381-13471638 asmbl_4884,asmbl_4889 // Retained and Spliced Intron # retained_intron 13471706-13472424 (orient:-) max_ev_support = 5 # spliced_intron 13471706-13472424 (orient:-) max_ev_support = 2 scaffold_10 - intron 13471706-13472424 asmbl_4886,asmbl_4888 scaffold_10 - retained_intron 13471706-13472424 asmbl_4884,asmbl_4885 // Retained and Spliced Intron # retained_intron 13525424-13525835 (orient:-) max_ev_support = 1 # spliced_intron 13525424-13525835 (orient:-) max_ev_support = 2 scaffold_10 - intron 13525424-13525835 asmbl_4896,asmbl_4899 scaffold_10 - retained_intron 13525424-13525835 asmbl_4898 // Retained and Spliced Intron # retained_intron 13544278-13544650 (orient:-) max_ev_support = 4 # spliced_intron 13544278-13544650 (orient:-) max_ev_support = 2 scaffold_10 - intron 13544278-13544650 asmbl_4904,asmbl_4907 scaffold_10 - retained_intron 13544278-13544650 asmbl_4905 // Retained and Spliced Intron # retained_intron 13563746-13563878 (orient:-) max_ev_support = 3 # spliced_intron 13563746-13563878 (orient:-) max_ev_support = 2 scaffold_10 - intron 13563746-13563878 asmbl_4911 scaffold_10 - retained_intron 13563746-13563878 asmbl_4910 // Exon Skipping and Retention # skipped_exon 13889774-13890094 (orient:-) max_ev_support = 1 # retained_exon 13889899-13889981 (orient:-) max_ev_support = 2 scaffold_10 - retained_exons 13889899-13889981 asmbl_4937 scaffold_10 - intron_skips_exon 13889774-13890094 asmbl_4938 // Exon Skipping and Retention # skipped_exon 13960219-13960633 (orient:-) max_ev_support = 1 # retained_exon 13960447-13960532 (orient:-) max_ev_support = 2 scaffold_10 - retained_exons 13960447-13960532 asmbl_4939 scaffold_10 - intron_skips_exon 13960219-13960633 asmbl_4940 // Retained and Spliced Intron # retained_intron 16475794-16476026 (orient:-) max_ev_support = 2 # spliced_intron 16475794-16476026 (orient:-) max_ev_support = 1 scaffold_10 - intron 16475794-16476026 asmbl_5006 scaffold_10 - retained_intron 16475794-16476026 asmbl_5005,asmbl_5008 // Retained and Spliced Intron # retained_intron 16475883-16476026 (orient:-) max_ev_support = 2 # spliced_intron 16475883-16476026 (orient:-) max_ev_support = 1 scaffold_10 - intron 16475883-16476026 asmbl_5009 scaffold_10 - retained_intron 16475883-16476026 asmbl_5005,asmbl_5008 // Retained and Spliced Intron # retained_intron 16475945-16476026 (orient:-) max_ev_support = 2 # spliced_intron 16475945-16476026 (orient:-) max_ev_support = 1 scaffold_10 - intron 16475945-16476026 asmbl_5007 scaffold_10 - retained_intron 16475945-16476026 asmbl_5005,asmbl_5008 // Retained and Spliced Intron # retained_intron 17090940-17090995 (orient:-) max_ev_support = 1 # spliced_intron 17090940-17090995 (orient:-) max_ev_support = 1 scaffold_10 - intron 17090940-17090995 asmbl_5031 scaffold_10 - retained_intron 17090940-17090995 asmbl_5030 // Exon Skipping and Retention # skipped_exon 17094808-17095396 (orient:-) max_ev_support = 1 # retained_exon 17095062-17095121 (orient:-) max_ev_support = 2 scaffold_10 - retained_exons 17095062-17095121 asmbl_5032,asmbl_5034 scaffold_10 - intron_skips_exon 17094808-17095396 asmbl_5033 // Retained and Spliced Intron # retained_intron 17204036-17204220 (orient:-) max_ev_support = 2 # spliced_intron 17204036-17204220 (orient:-) max_ev_support = 1 scaffold_10 - intron 17204036-17204220 asmbl_5042 scaffold_10 - retained_intron 17204036-17204220 asmbl_5041 // Retained and Spliced Intron # retained_intron 17325221-17325630 (orient:-) max_ev_support = 2 # spliced_intron 17325221-17325630 (orient:-) max_ev_support = 2 scaffold_10 - intron 17325221-17325630 asmbl_5053 scaffold_10 - retained_intron 17325221-17325630 asmbl_5052 // Retained and Spliced Intron # retained_intron 17325221-17326440 (orient:-) max_ev_support = 2 # spliced_intron 17325221-17326440 (orient:-) max_ev_support = 2 scaffold_10 - intron 17325221-17326440 asmbl_5051 scaffold_10 - retained_intron 17325221-17326440 asmbl_5052 // Retained and Spliced Intron # retained_intron 17325750-17326440 (orient:-) max_ev_support = 2 # spliced_intron 17325750-17326440 (orient:-) max_ev_support = 2 scaffold_10 - intron 17325750-17326440 asmbl_5053 scaffold_10 - retained_intron 17325750-17326440 asmbl_5052 // Exon Skipping and Retention # skipped_exon 17325221-17326440 (orient:-) max_ev_support = 2 # retained_exon 17325631-17325749 (orient:-) max_ev_support = 2 scaffold_10 - retained_exons 17325631-17325749 asmbl_5053 scaffold_10 - intron_skips_exon 17325221-17326440 asmbl_5051 // Retained and Spliced Intron # retained_intron 2773-2913 (orient:+) max_ev_support = 1 # spliced_intron 2773-2913 (orient:+) max_ev_support = 1 scaffold_1097 + intron 2773-2913 asmbl_5247 scaffold_1097 + retained_intron 2773-2913 asmbl_5248 // Retained and Spliced Intron # retained_intron 38298-38788 (orient:+) max_ev_support = 1 # spliced_intron 38298-38788 (orient:+) max_ev_support = 1 scaffold_11 + intron 38298-38788 asmbl_5254 scaffold_11 + retained_intron 38298-38788 asmbl_5255 // Retained and Spliced Intron # retained_intron 170652-171007 (orient:+) max_ev_support = 1 # spliced_intron 170652-171007 (orient:+) max_ev_support = 1 scaffold_11 + intron 170652-171007 asmbl_5261 scaffold_11 + retained_intron 170652-171007 asmbl_5260 // Retained and Spliced Intron # retained_intron 171562-171671 (orient:+) max_ev_support = 1 # spliced_intron 171562-171671 (orient:+) max_ev_support = 2 scaffold_11 + intron 171562-171671 asmbl_5260 scaffold_11 + retained_intron 171562-171671 asmbl_5262 // Retained and Spliced Intron # retained_intron 171562-171780 (orient:+) max_ev_support = 1 # spliced_intron 171562-171780 (orient:+) max_ev_support = 1 scaffold_11 + intron 171562-171780 asmbl_5261 scaffold_11 + retained_intron 171562-171780 asmbl_5262 // Retained and Spliced Intron # retained_intron 176324-176605 (orient:+) max_ev_support = 2 # spliced_intron 176324-176605 (orient:+) max_ev_support = 1 scaffold_11 + intron 176324-176605 asmbl_5266 scaffold_11 + retained_intron 176324-176605 asmbl_5264,asmbl_5265,asmbl_5267 // Retained and Spliced Intron # retained_intron 175992-176272 (orient:+) max_ev_support = 1 # spliced_intron 175992-176272 (orient:+) max_ev_support = 2 scaffold_11 + intron 175992-176272 asmbl_5264,asmbl_5266 scaffold_11 + retained_intron 175992-176272 asmbl_5265,asmbl_5267 // Retained and Spliced Intron # retained_intron 175992-176605 (orient:+) max_ev_support = 1 # spliced_intron 175992-176605 (orient:+) max_ev_support = 2 scaffold_11 + intron 175992-176605 asmbl_5263,asmbl_5268,asmbl_5269 scaffold_11 + retained_intron 175992-176605 asmbl_5265,asmbl_5267 // Exon Skipping and Retention # skipped_exon 175992-176605 (orient:+) max_ev_support = 2 # retained_exon 176273-176323 (orient:+) max_ev_support = 1 scaffold_11 + retained_exons 176273-176323 asmbl_5266 scaffold_11 + intron_skips_exon 175992-176605 asmbl_5263,asmbl_5268,asmbl_5269 // Retained and Spliced Intron # retained_intron 174383-174536 (orient:+) max_ev_support = 1 # spliced_intron 174383-174536 (orient:+) max_ev_support = 2 scaffold_11 + intron 174383-174536 asmbl_5263,asmbl_5265,asmbl_5266,asmbl_5267,asmbl_5269 scaffold_11 + retained_intron 174383-174536 asmbl_5268 // Retained and Spliced Intron # retained_intron 257277-257296 (orient:+) max_ev_support = 2 # spliced_intron 257277-257296 (orient:+) max_ev_support = 1 scaffold_11 + intron 257277-257296 asmbl_5284 scaffold_11 + retained_intron 257277-257296 asmbl_5283 // Retained and Spliced Intron # retained_intron 854023-854153 (orient:+) max_ev_support = 2 # spliced_intron 854023-854153 (orient:+) max_ev_support = 2 scaffold_11 + intron 854023-854153 asmbl_5307,asmbl_5310 scaffold_11 + retained_intron 854023-854153 asmbl_5306 // Retained and Spliced Intron # retained_intron 857013-857158 (orient:+) max_ev_support = 1 # spliced_intron 857013-857158 (orient:+) max_ev_support = 2 scaffold_11 + intron 857013-857158 asmbl_5307,asmbl_5309,asmbl_5310 scaffold_11 + retained_intron 857013-857158 asmbl_5311 // Retained and Spliced Intron # retained_intron 932741-932796 (orient:+) max_ev_support = 2 # spliced_intron 932741-932796 (orient:+) max_ev_support = 1 scaffold_11 + intron 932741-932796 asmbl_5316 scaffold_11 + retained_intron 932741-932796 asmbl_5315 // Exon Skipping and Retention # skipped_exon 1143485-1145193 (orient:+) max_ev_support = 1 # retained_exon 1143917-1145017 (orient:+) max_ev_support = 2 scaffold_11 + retained_exons 1143917-1144108,1144826-1145017 asmbl_5321,asmbl_5323 scaffold_11 + intron_skips_exon 1143485-1145193 asmbl_5322 // Retained and Spliced Intron # retained_intron 1985399-1985437 (orient:+) max_ev_support = 1 # spliced_intron 1985399-1985437 (orient:+) max_ev_support = 1 scaffold_11 + intron 1985399-1985437 asmbl_5351 scaffold_11 + retained_intron 1985399-1985437 asmbl_5350 // Retained and Spliced Intron # retained_intron 1985477-1985515 (orient:+) max_ev_support = 1 # spliced_intron 1985477-1985515 (orient:+) max_ev_support = 1 scaffold_11 + intron 1985477-1985515 asmbl_5350 scaffold_11 + retained_intron 1985477-1985515 asmbl_5351 // Retained and Spliced Intron # retained_intron 1985555-1985593 (orient:+) max_ev_support = 1 # spliced_intron 1985555-1985593 (orient:+) max_ev_support = 1 scaffold_11 + intron 1985555-1985593 asmbl_5350 scaffold_11 + retained_intron 1985555-1985593 asmbl_5351 // Retained and Spliced Intron # retained_intron 2061239-2061594 (orient:+) max_ev_support = 2 # spliced_intron 2061239-2061594 (orient:+) max_ev_support = 1 scaffold_11 + intron 2061239-2061594 asmbl_5356 scaffold_11 + retained_intron 2061239-2061594 asmbl_5352,asmbl_5353 // Retained and Spliced Intron # retained_intron 2061501-2061594 (orient:+) max_ev_support = 2 # spliced_intron 2061501-2061594 (orient:+) max_ev_support = 2 scaffold_11 + intron 2061501-2061594 asmbl_5354 scaffold_11 + retained_intron 2061501-2061594 asmbl_5352,asmbl_5353 // Retained and Spliced Intron # retained_intron 2061692-2061854 (orient:+) max_ev_support = 2 # spliced_intron 2061692-2061854 (orient:+) max_ev_support = 2 scaffold_11 + intron 2061692-2061854 asmbl_5352,asmbl_5354,asmbl_5356 scaffold_11 + retained_intron 2061692-2061854 asmbl_5353 // Exon Skipping and Retention # skipped_exon 2090208-2091184 (orient:+) max_ev_support = 2 # retained_exon 2090878-2090989 (orient:+) max_ev_support = 2 scaffold_11 + retained_exons 2090878-2090989 asmbl_5360,asmbl_5361 scaffold_11 + intron_skips_exon 2090208-2091184 asmbl_5362 // Exon Skipping and Retention # skipped_exon 2776469-2778507 (orient:+) max_ev_support = 2 # retained_exon 2777999-2778022 (orient:+) max_ev_support = 2 scaffold_11 + retained_exons 2777999-2778022 asmbl_5378 scaffold_11 + intron_skips_exon 2776469-2778507 asmbl_5379 // Retained and Spliced Intron # retained_intron 2833544-2833641 (orient:+) max_ev_support = 1 # spliced_intron 2833544-2833641 (orient:+) max_ev_support = 2 scaffold_11 + intron 2833544-2833641 asmbl_5380,asmbl_5381 scaffold_11 + retained_intron 2833544-2833641 asmbl_5382 // Exon Skipping and Retention # skipped_exon 3024461-3026445 (orient:+) max_ev_support = 2 # retained_exon 3025502-3025890 (orient:+) max_ev_support = 2 scaffold_11 + retained_exons 3025502-3025890 asmbl_5396 scaffold_11 + intron_skips_exon 3024461-3026445 asmbl_5395 // Exon Skipping and Retention # skipped_exon 3024724-3026445 (orient:+) max_ev_support = 1 # retained_exon 3025502-3025890 (orient:+) max_ev_support = 2 scaffold_11 + retained_exons 3025502-3025890 asmbl_5396 scaffold_11 + intron_skips_exon 3024724-3026445 asmbl_5397 // Exon Skipping and Retention # skipped_exon 3091771-3092702 (orient:+) max_ev_support = 1 # retained_exon 3091977-3092261 (orient:+) max_ev_support = 2 scaffold_11 + retained_exons 3091977-3092261 asmbl_5399 scaffold_11 + intron_skips_exon 3091771-3092702 asmbl_5400 // Exon Skipping and Retention # skipped_exon 3092262-3093974 (orient:+) max_ev_support = 2 # retained_exon 3092703-3092987 (orient:+) max_ev_support = 1 scaffold_11 + retained_exons 3092703-3092987 asmbl_5400 scaffold_11 + intron_skips_exon 3092262-3093974 asmbl_5399 // Retained and Spliced Intron # retained_intron 3095645-3095846 (orient:+) max_ev_support = 1 # spliced_intron 3095645-3095846 (orient:+) max_ev_support = 1 scaffold_11 + intron 3095645-3095846 asmbl_5402 scaffold_11 + retained_intron 3095645-3095846 asmbl_5403 // Retained and Spliced Intron # retained_intron 3186863-3186973 (orient:+) max_ev_support = 1 # spliced_intron 3186863-3186973 (orient:+) max_ev_support = 1 scaffold_11 + intron 3186863-3186973 asmbl_5409 scaffold_11 + retained_intron 3186863-3186973 asmbl_5410 // Retained and Spliced Intron # retained_intron 3358702-3358797 (orient:+) max_ev_support = 1 # spliced_intron 3358702-3358797 (orient:+) max_ev_support = 1 scaffold_11 + intron 3358702-3358797 asmbl_5422,asmbl_5424 scaffold_11 + retained_intron 3358702-3358797 asmbl_5423 // Retained and Spliced Intron # retained_intron 3486134-3486289 (orient:+) max_ev_support = 3 # spliced_intron 3486134-3486289 (orient:+) max_ev_support = 1 scaffold_11 + intron 3486134-3486289 asmbl_5435 scaffold_11 + retained_intron 3486134-3486289 asmbl_5434 // Exon Skipping and Retention # skipped_exon 3497550-3498550 (orient:+) max_ev_support = 1 # retained_exon 3498241-3498441 (orient:+) max_ev_support = 1 scaffold_11 + retained_exons 3498241-3498441 asmbl_5438 scaffold_11 + intron_skips_exon 3497550-3498550 asmbl_5439 // Exon Skipping and Retention # skipped_exon 3497053-3497672 (orient:+) max_ev_support = 1 # retained_exon 3497229-3497549 (orient:+) max_ev_support = 1 scaffold_11 + retained_exons 3497229-3497549 asmbl_5439,asmbl_5441 scaffold_11 + intron_skips_exon 3497053-3497672 asmbl_5440 // Exon Skipping and Retention # skipped_exon 3497358-3498240 (orient:+) max_ev_support = 1 # retained_exon 3497673-3498002 (orient:+) max_ev_support = 1 scaffold_11 + retained_exons 3497673-3498002 asmbl_5441 scaffold_11 + intron_skips_exon 3497358-3498240 asmbl_5438 // Exon Skipping and Retention # skipped_exon 3514872-3517181 (orient:+) max_ev_support = 1 # retained_exon 3516397-3516552 (orient:+) max_ev_support = 1 scaffold_11 + retained_exons 3516397-3516552 asmbl_5446,asmbl_5447 scaffold_11 + intron_skips_exon 3514872-3517181 asmbl_5445 // Retained and Spliced Intron # retained_intron 3697980-3698259 (orient:+) max_ev_support = 2 # spliced_intron 3697980-3698259 (orient:+) max_ev_support = 1 scaffold_11 + intron 3697980-3698259 asmbl_5457 scaffold_11 + retained_intron 3697980-3698259 asmbl_5455 // Retained and Spliced Intron # retained_intron 3698054-3698259 (orient:+) max_ev_support = 2 # spliced_intron 3698054-3698259 (orient:+) max_ev_support = 2 scaffold_11 + intron 3698054-3698259 asmbl_5456 scaffold_11 + retained_intron 3698054-3698259 asmbl_5455 // Retained and Spliced Intron # retained_intron 3901228-3901407 (orient:+) max_ev_support = 1 # spliced_intron 3901228-3901407 (orient:+) max_ev_support = 1 scaffold_11 + intron 3901228-3901407 asmbl_5468 scaffold_11 + retained_intron 3901228-3901407 asmbl_5469 // Retained and Spliced Intron # retained_intron 4639501-4639586 (orient:+) max_ev_support = 1 # spliced_intron 4639501-4639586 (orient:+) max_ev_support = 2 scaffold_11 + intron 4639501-4639586 asmbl_5488 scaffold_11 + retained_intron 4639501-4639586 asmbl_5492 // Retained and Spliced Intron # retained_intron 4666941-4667075 (orient:+) max_ev_support = 3 # spliced_intron 4666941-4667075 (orient:+) max_ev_support = 2 scaffold_11 + intron 4666941-4667075 asmbl_5495,asmbl_5496 scaffold_11 + retained_intron 4666941-4667075 asmbl_5494 // Retained and Spliced Intron # retained_intron 4666033-4666246 (orient:+) max_ev_support = 2 # spliced_intron 4666033-4666246 (orient:+) max_ev_support = 1 scaffold_11 + intron 4666033-4666246 asmbl_5494,asmbl_5496 scaffold_11 + retained_intron 4666033-4666246 asmbl_5495 // Retained and Spliced Intron # retained_intron 4747068-4747472 (orient:+) max_ev_support = 2 # spliced_intron 4747068-4747472 (orient:+) max_ev_support = 1 scaffold_11 + intron 4747068-4747472 asmbl_5512 scaffold_11 + retained_intron 4747068-4747472 asmbl_5511 // Retained and Spliced Intron # retained_intron 4756929-4757259 (orient:+) max_ev_support = 2 # spliced_intron 4756929-4757259 (orient:+) max_ev_support = 2 scaffold_11 + intron 4756929-4757259 asmbl_5518,asmbl_5520,asmbl_5521,asmbl_5522 scaffold_11 + retained_intron 4756929-4757259 asmbl_5519 // Retained and Spliced Intron # retained_intron 4755809-4755904 (orient:+) max_ev_support = 1 # spliced_intron 4755809-4755904 (orient:+) max_ev_support = 2 scaffold_11 + intron 4755809-4755904 asmbl_5518,asmbl_5521 scaffold_11 + retained_intron 4755809-4755904 asmbl_5520 // Retained and Spliced Intron # retained_intron 4756244-4756446 (orient:+) max_ev_support = 1 # spliced_intron 4756244-4756446 (orient:+) max_ev_support = 2 scaffold_11 + intron 4756244-4756446 asmbl_5518,asmbl_5520 scaffold_11 + retained_intron 4756244-4756446 asmbl_5521 // Retained and Spliced Intron # retained_intron 4756626-4756833 (orient:+) max_ev_support = 1 # spliced_intron 4756626-4756833 (orient:+) max_ev_support = 2 scaffold_11 + intron 4756626-4756833 asmbl_5518,asmbl_5520,asmbl_5521 scaffold_11 + retained_intron 4756626-4756833 asmbl_5522 // Exon Skipping and Retention # skipped_exon 4859568-4861210 (orient:+) max_ev_support = 1 # retained_exon 4860785-4860893 (orient:+) max_ev_support = 3 scaffold_11 + retained_exons 4860785-4860893 asmbl_5530 scaffold_11 + intron_skips_exon 4859568-4861210 asmbl_5531 // Retained and Spliced Intron # retained_intron 5258825-5258854 (orient:+) max_ev_support = 2 # spliced_intron 5258825-5258854 (orient:+) max_ev_support = 1 scaffold_11 + intron 5258825-5258854 asmbl_5559 scaffold_11 + retained_intron 5258825-5258854 asmbl_5556 // Retained and Spliced Intron # retained_intron 5525403-5525484 (orient:+) max_ev_support = 1 # spliced_intron 5525403-5525484 (orient:+) max_ev_support = 2 scaffold_11 + intron 5525403-5525484 asmbl_5566 scaffold_11 + retained_intron 5525403-5525484 asmbl_5567 // Retained and Spliced Intron # retained_intron 5651474-5651835 (orient:+) max_ev_support = 1 # spliced_intron 5651474-5651835 (orient:+) max_ev_support = 2 scaffold_11 + intron 5651474-5651835 asmbl_5572 scaffold_11 + retained_intron 5651474-5651835 asmbl_5574 // Exon Skipping and Retention # skipped_exon 6063224-6064807 (orient:+) max_ev_support = 2 # retained_exon 6063857-6063910 (orient:+) max_ev_support = 1 scaffold_11 + retained_exons 6063857-6063910 asmbl_5608 scaffold_11 + intron_skips_exon 6063224-6064807 asmbl_5605 // Retained and Spliced Intron # retained_intron 6251734-6252621 (orient:+) max_ev_support = 3 # spliced_intron 6251734-6252621 (orient:+) max_ev_support = 2 scaffold_11 + intron 6251734-6252621 asmbl_5620,asmbl_5625 scaffold_11 + retained_intron 6251734-6252621 asmbl_5618 // Retained and Spliced Intron # retained_intron 6251734-6253377 (orient:+) max_ev_support = 4 # spliced_intron 6251734-6253377 (orient:+) max_ev_support = 2 scaffold_11 + intron 6251734-6253377 asmbl_5621 scaffold_11 + retained_intron 6251734-6253377 asmbl_5618 // Retained and Spliced Intron # retained_intron 6252706-6253377 (orient:+) max_ev_support = 2 # spliced_intron 6252706-6253377 (orient:+) max_ev_support = 2 scaffold_11 + intron 6252706-6253377 asmbl_5620,asmbl_5623,asmbl_5625 scaffold_11 + retained_intron 6252706-6253377 asmbl_5618 // Retained and Spliced Intron # retained_intron 6254831-6256304 (orient:+) max_ev_support = 4 # spliced_intron 6254831-6256304 (orient:+) max_ev_support = 2 scaffold_11 + intron 6254831-6256304 asmbl_5621,asmbl_5623,asmbl_5625 scaffold_11 + retained_intron 6254831-6256304 asmbl_5619 // Exon Skipping and Retention # skipped_exon 6251734-6253377 (orient:+) max_ev_support = 2 # retained_exon 6252622-6252705 (orient:+) max_ev_support = 2 scaffold_11 + retained_exons 6252622-6252705 asmbl_5620,asmbl_5625 scaffold_11 + intron_skips_exon 6251734-6253377 asmbl_5621 // Exon Skipping and Retention # skipped_exon 6504654-6505440 (orient:+) max_ev_support = 1 # retained_exon 6504884-6505023 (orient:+) max_ev_support = 3 scaffold_11 + retained_exons 6504884-6505023 asmbl_5629 scaffold_11 + intron_skips_exon 6504654-6505440 asmbl_5630 // Exon Skipping and Retention # skipped_exon 7047689-7049335 (orient:+) max_ev_support = 1 # retained_exon 7048932-7049050 (orient:+) max_ev_support = 3 scaffold_11 + retained_exons 7048932-7049050 asmbl_5644,asmbl_5645,asmbl_5647,asmbl_5650 scaffold_11 + intron_skips_exon 7047689-7049335 asmbl_5646,asmbl_5651 // Retained and Spliced Intron # retained_intron 7049528-7049788 (orient:+) max_ev_support = 2 # spliced_intron 7049528-7049788 (orient:+) max_ev_support = 3 scaffold_11 + intron 7049528-7049788 asmbl_5646,asmbl_5648,asmbl_5650,asmbl_5651 scaffold_11 + retained_intron 7049528-7049788 asmbl_5645 // Retained and Spliced Intron # retained_intron 7049578-7049788 (orient:+) max_ev_support = 2 # spliced_intron 7049578-7049788 (orient:+) max_ev_support = 3 scaffold_11 + intron 7049578-7049788 asmbl_5644,asmbl_5647 scaffold_11 + retained_intron 7049578-7049788 asmbl_5645 // Retained and Spliced Intron # retained_intron 7091036-7091125 (orient:+) max_ev_support = 1 # spliced_intron 7091036-7091125 (orient:+) max_ev_support = 2 scaffold_11 + intron 7091036-7091125 asmbl_5657 scaffold_11 + retained_intron 7091036-7091125 asmbl_5658 // Exon Skipping and Retention # skipped_exon 7403201-7404365 (orient:+) max_ev_support = 2 # retained_exon 7403752-7404186 (orient:+) max_ev_support = 3 scaffold_11 + retained_exons 7403752-7404186 asmbl_5669 scaffold_11 + intron_skips_exon 7403201-7404365 asmbl_5670 // Retained and Spliced Intron # retained_intron 7819465-7819560 (orient:+) max_ev_support = 3 # spliced_intron 7819465-7819560 (orient:+) max_ev_support = 3 scaffold_11 + intron 7819465-7819560 asmbl_5681 scaffold_11 + retained_intron 7819465-7819560 asmbl_5682 // Exon Skipping and Retention # skipped_exon 7924464-7925337 (orient:+) max_ev_support = 3 # retained_exon 7924530-7924768 (orient:+) max_ev_support = 3 scaffold_11 + retained_exons 7924530-7924768 asmbl_5696 scaffold_11 + intron_skips_exon 7924464-7925337 asmbl_5698 // Retained and Spliced Intron # retained_intron 7924431-7924529 (orient:+) max_ev_support = 3 # spliced_intron 7924431-7924529 (orient:+) max_ev_support = 3 scaffold_11 + intron 7924431-7924529 asmbl_5696,asmbl_5699 scaffold_11 + retained_intron 7924431-7924529 asmbl_5697,asmbl_5700 // Retained and Spliced Intron # retained_intron 7924464-7925337 (orient:+) max_ev_support = 3 # spliced_intron 7924464-7925337 (orient:+) max_ev_support = 3 scaffold_11 + intron 7924464-7925337 asmbl_5698 scaffold_11 + retained_intron 7924464-7925337 asmbl_5697 // Retained and Spliced Intron # retained_intron 7924769-7925337 (orient:+) max_ev_support = 3 # spliced_intron 7924769-7925337 (orient:+) max_ev_support = 3 scaffold_11 + intron 7924769-7925337 asmbl_5696,asmbl_5700 scaffold_11 + retained_intron 7924769-7925337 asmbl_5697,asmbl_5699 // Retained and Spliced Intron # retained_intron 8050351-8050449 (orient:+) max_ev_support = 3 # spliced_intron 8050351-8050449 (orient:+) max_ev_support = 3 scaffold_11 + intron 8050351-8050449 asmbl_5711 scaffold_11 + retained_intron 8050351-8050449 asmbl_5710 // Retained and Spliced Intron # retained_intron 8079637-8079771 (orient:+) max_ev_support = 3 # spliced_intron 8079637-8079771 (orient:+) max_ev_support = 2 scaffold_11 + intron 8079637-8079771 asmbl_5716 scaffold_11 + retained_intron 8079637-8079771 asmbl_5713,asmbl_5714,asmbl_5715 // Retained and Spliced Intron # retained_intron 8082241-8082340 (orient:+) max_ev_support = 3 # spliced_intron 8082241-8082340 (orient:+) max_ev_support = 2 scaffold_11 + intron 8082241-8082340 asmbl_5715 scaffold_11 + retained_intron 8082241-8082340 asmbl_5713,asmbl_5714,asmbl_5716 // Retained and Spliced Intron # retained_intron 8080714-8080789 (orient:+) max_ev_support = 2 # spliced_intron 8080714-8080789 (orient:+) max_ev_support = 3 scaffold_11 + intron 8080714-8080789 asmbl_5713,asmbl_5715,asmbl_5716 scaffold_11 + retained_intron 8080714-8080789 asmbl_5714 // Retained and Spliced Intron # retained_intron 8099585-8099683 (orient:+) max_ev_support = 2 # spliced_intron 8099585-8099683 (orient:+) max_ev_support = 3 scaffold_11 + intron 8099585-8099683 asmbl_5721,asmbl_5722,asmbl_5723,asmbl_5724,asmbl_5726,asmbl_5727 scaffold_11 + retained_intron 8099585-8099683 asmbl_5725 // Retained and Spliced Intron # retained_intron 8099759-8099979 (orient:+) max_ev_support = 2 # spliced_intron 8099759-8099979 (orient:+) max_ev_support = 3 scaffold_11 + intron 8099759-8099979 asmbl_5721,asmbl_5722,asmbl_5723,asmbl_5724,asmbl_5727 scaffold_11 + retained_intron 8099759-8099979 asmbl_5725,asmbl_5726 // Retained and Spliced Intron # retained_intron 8100073-8100172 (orient:+) max_ev_support = 2 # spliced_intron 8100073-8100172 (orient:+) max_ev_support = 3 scaffold_11 + intron 8100073-8100172 asmbl_5721,asmbl_5722,asmbl_5723,asmbl_5724,asmbl_5727 scaffold_11 + retained_intron 8100073-8100172 asmbl_5725,asmbl_5726 // Retained and Spliced Intron # retained_intron 8100269-8100367 (orient:+) max_ev_support = 2 # spliced_intron 8100269-8100367 (orient:+) max_ev_support = 3 scaffold_11 + intron 8100269-8100367 asmbl_5721,asmbl_5722,asmbl_5723,asmbl_5724,asmbl_5727 scaffold_11 + retained_intron 8100269-8100367 asmbl_5725,asmbl_5726 // Exon Skipping and Retention # skipped_exon 8102683-8103519 (orient:+) max_ev_support = 1 # retained_exon 8102954-8103388 (orient:+) max_ev_support = 2 scaffold_11 + retained_exons 8102954-8103128,8103234-8103388 asmbl_5728 scaffold_11 + intron_skips_exon 8102683-8103519 asmbl_5733 // Retained and Spliced Intron # retained_intron 8103129-8103233 (orient:+) max_ev_support = 2 # spliced_intron 8103129-8103233 (orient:+) max_ev_support = 2 scaffold_11 + intron 8103129-8103233 asmbl_5728,asmbl_5729,asmbl_5731,asmbl_5732 scaffold_11 + retained_intron 8103129-8103233 asmbl_5730 // Retained and Spliced Intron # retained_intron 8105125-8105409 (orient:+) max_ev_support = 1 # spliced_intron 8105125-8105409 (orient:+) max_ev_support = 2 scaffold_11 + intron 8105125-8105409 asmbl_5728,asmbl_5729,asmbl_5732,asmbl_5733,asmbl_5734,asmbl_5735 scaffold_11 + retained_intron 8105125-8105409 asmbl_5731 // Exon Skipping and Retention # skipped_exon 8308762-8310348 (orient:+) max_ev_support = 2 # retained_exon 8309207-8309245 (orient:+) max_ev_support = 1 scaffold_11 + retained_exons 8309207-8309245 asmbl_5748 scaffold_11 + intron_skips_exon 8308762-8310348 asmbl_5745 // Exon Skipping and Retention # skipped_exon 8330782-8331357 (orient:+) max_ev_support = 2 # retained_exon 8331179-8331294 (orient:+) max_ev_support = 3 scaffold_11 + retained_exons 8331179-8331294 asmbl_5750 scaffold_11 + intron_skips_exon 8330782-8331357 asmbl_5751 // Retained and Spliced Intron # retained_intron 8398703-8399332 (orient:+) max_ev_support = 4 # spliced_intron 8398703-8399332 (orient:+) max_ev_support = 2 scaffold_11 + intron 8398703-8399332 asmbl_5763 scaffold_11 + retained_intron 8398703-8399332 asmbl_5761,asmbl_5762,asmbl_5767,asmbl_5768 // Exon Skipping and Retention # skipped_exon 8397912-8399332 (orient:+) max_ev_support = 2 # retained_exon 8398329-8398702 (orient:+) max_ev_support = 2 scaffold_11 + retained_exons 8398329-8398702 asmbl_5763 scaffold_11 + intron_skips_exon 8397912-8399332 asmbl_5764,asmbl_5766 // Retained and Spliced Intron # retained_intron 8399407-8399497 (orient:+) max_ev_support = 1 # spliced_intron 8399407-8399497 (orient:+) max_ev_support = 4 scaffold_11 + intron 8399407-8399497 asmbl_5761,asmbl_5762,asmbl_5763,asmbl_5764 scaffold_11 + retained_intron 8399407-8399497 asmbl_5766,asmbl_5767,asmbl_5768 // Exon Skipping and Retention # skipped_exon 8478295-8479288 (orient:+) max_ev_support = 3 # retained_exon 8478806-8478871 (orient:+) max_ev_support = 3 scaffold_11 + retained_exons 8478806-8478871 asmbl_5783 scaffold_11 + intron_skips_exon 8478295-8479288 asmbl_5784 // Exon Skipping and Retention # skipped_exon 8476825-8478805 (orient:+) max_ev_support = 3 # retained_exon 8478214-8478294 (orient:+) max_ev_support = 3 scaffold_11 + retained_exons 8478214-8478294 asmbl_5784 scaffold_11 + intron_skips_exon 8476825-8478805 asmbl_5783 // Retained and Spliced Intron # retained_intron 8478872-8479288 (orient:+) max_ev_support = 2 # spliced_intron 8478872-8479288 (orient:+) max_ev_support = 3 scaffold_11 + intron 8478872-8479288 asmbl_5783,asmbl_5789 scaffold_11 + retained_intron 8478872-8479288 asmbl_5788 // Retained and Spliced Intron # retained_intron 8567155-8567273 (orient:+) max_ev_support = 2 # spliced_intron 8567155-8567273 (orient:+) max_ev_support = 3 scaffold_11 + intron 8567155-8567273 asmbl_5800 scaffold_11 + retained_intron 8567155-8567273 asmbl_5801,asmbl_5802 // Exon Skipping and Retention # skipped_exon 8600562-8601790 (orient:+) max_ev_support = 1 # retained_exon 8601136-8601306 (orient:+) max_ev_support = 3 scaffold_11 + retained_exons 8601136-8601306 asmbl_5806,asmbl_5808,asmbl_5811 scaffold_11 + intron_skips_exon 8600562-8601790 asmbl_5813 // Retained and Spliced Intron # retained_intron 8601859-8601985 (orient:+) max_ev_support = 2 # spliced_intron 8601859-8601985 (orient:+) max_ev_support = 3 scaffold_11 + intron 8601859-8601985 asmbl_5806,asmbl_5809,asmbl_5811,asmbl_5813 scaffold_11 + retained_intron 8601859-8601985 asmbl_5808 // Retained and Spliced Intron # retained_intron 8600562-8601135 (orient:+) max_ev_support = 2 # spliced_intron 8600562-8601135 (orient:+) max_ev_support = 3 scaffold_11 + intron 8600562-8601135 asmbl_5806,asmbl_5808,asmbl_5811 scaffold_11 + retained_intron 8600562-8601135 asmbl_5809 // Retained and Spliced Intron # retained_intron 8723372-8723845 (orient:+) max_ev_support = 5 # spliced_intron 8723372-8723845 (orient:+) max_ev_support = 3 scaffold_11 + intron 8723372-8723845 asmbl_5832,asmbl_5833 scaffold_11 + retained_intron 8723372-8723845 asmbl_5830,asmbl_5831 // Retained and Spliced Intron # retained_intron 8735988-8736072 (orient:+) max_ev_support = 1 # spliced_intron 8735988-8736072 (orient:+) max_ev_support = 1 scaffold_11 + intron 8735988-8736072 asmbl_5838 scaffold_11 + retained_intron 8735988-8736072 asmbl_5837 // Exon Skipping and Retention # skipped_exon 9122914-9123614 (orient:+) max_ev_support = 2 # retained_exon 9123255-9123278 (orient:+) max_ev_support = 2 scaffold_11 + retained_exons 9123255-9123278 asmbl_5868,asmbl_5870 scaffold_11 + intron_skips_exon 9122914-9123614 asmbl_5869 // Exon Skipping and Retention # skipped_exon 9130809-9131505 (orient:+) max_ev_support = 2 # retained_exon 9131081-9131092 (orient:+) max_ev_support = 1 scaffold_11 + retained_exons 9131081-9131092 asmbl_5870,asmbl_5872 scaffold_11 + intron_skips_exon 9130809-9131505 asmbl_5868,asmbl_5869,asmbl_5871 // Exon Skipping and Retention # skipped_exon 9149571-9150033 (orient:+) max_ev_support = 2 # retained_exon 9149693-9149768 (orient:+) max_ev_support = 2 scaffold_11 + retained_exons 9149693-9149768 asmbl_5873 scaffold_11 + intron_skips_exon 9149571-9150033 asmbl_5874 // Retained and Spliced Intron # retained_intron 9174309-9174475 (orient:+) max_ev_support = 3 # spliced_intron 9174309-9174475 (orient:+) max_ev_support = 3 scaffold_11 + intron 9174309-9174475 asmbl_5877 scaffold_11 + retained_intron 9174309-9174475 asmbl_5878 // Retained and Spliced Intron # retained_intron 9281871-9282068 (orient:+) max_ev_support = 3 # spliced_intron 9281871-9282068 (orient:+) max_ev_support = 2 scaffold_11 + intron 9281871-9282068 asmbl_5885,asmbl_5886 scaffold_11 + retained_intron 9281871-9282068 asmbl_5884 // Exon Skipping and Retention # skipped_exon 9816932-9817297 (orient:+) max_ev_support = 1 # retained_exon 9817110-9817177 (orient:+) max_ev_support = 2 scaffold_11 + retained_exons 9817110-9817177 asmbl_5902 scaffold_11 + intron_skips_exon 9816932-9817297 asmbl_5903 // Retained and Spliced Intron # retained_intron 9829435-9829603 (orient:+) max_ev_support = 5 # spliced_intron 9829435-9829603 (orient:+) max_ev_support = 1 scaffold_11 + intron 9829435-9829603 asmbl_5908,asmbl_5913 scaffold_11 + retained_intron 9829435-9829603 asmbl_5906,asmbl_5907 // Retained and Spliced Intron # retained_intron 9829435-9831678 (orient:+) max_ev_support = 6 # spliced_intron 9829435-9831678 (orient:+) max_ev_support = 2 scaffold_11 + intron 9829435-9831678 asmbl_5909 scaffold_11 + retained_intron 9829435-9831678 asmbl_5906 // Retained and Spliced Intron # retained_intron 9829790-9830568 (orient:+) max_ev_support = 3 # spliced_intron 9829790-9830568 (orient:+) max_ev_support = 1 scaffold_11 + intron 9829790-9830568 asmbl_5908,asmbl_5913 scaffold_11 + retained_intron 9829790-9830568 asmbl_5906,asmbl_5907 // Retained and Spliced Intron # retained_intron 9830658-9831678 (orient:+) max_ev_support = 4 # spliced_intron 9830658-9831678 (orient:+) max_ev_support = 1 scaffold_11 + intron 9830658-9831678 asmbl_5907,asmbl_5908,asmbl_5913 scaffold_11 + retained_intron 9830658-9831678 asmbl_5906 // Retained and Spliced Intron # retained_intron 9832457-9832783 (orient:+) max_ev_support = 2 # spliced_intron 9832457-9832783 (orient:+) max_ev_support = 3 scaffold_11 + intron 9832457-9832783 asmbl_5906,asmbl_5908,asmbl_5909,asmbl_5911,asmbl_5913 scaffold_11 + retained_intron 9832457-9832783 asmbl_5907,asmbl_5910,asmbl_5914 // Exon Skipping and Retention # skipped_exon 9829435-9831678 (orient:+) max_ev_support = 2 # retained_exon 9829604-9830657 (orient:+) max_ev_support = 1 scaffold_11 + retained_exons 9829604-9829789,9830569-9830657 asmbl_5908,asmbl_5913 scaffold_11 + intron_skips_exon 9829435-9831678 asmbl_5909 // Retained and Spliced Intron # retained_intron 9832014-9832313 (orient:+) max_ev_support = 2 # spliced_intron 9832014-9832313 (orient:+) max_ev_support = 2 scaffold_11 + intron 9832014-9832313 asmbl_5906,asmbl_5907,asmbl_5909,asmbl_5913 scaffold_11 + retained_intron 9832014-9832313 asmbl_5910,asmbl_5911,asmbl_5914 // Retained and Spliced Intron # retained_intron 9832014-9832321 (orient:+) max_ev_support = 2 # spliced_intron 9832014-9832321 (orient:+) max_ev_support = 3 scaffold_11 + intron 9832014-9832321 asmbl_5908 scaffold_11 + retained_intron 9832014-9832321 asmbl_5910,asmbl_5911,asmbl_5914 // Retained and Spliced Intron # retained_intron 9926131-9926272 (orient:+) max_ev_support = 1 # spliced_intron 9926131-9926272 (orient:+) max_ev_support = 3 scaffold_11 + intron 9926131-9926272 asmbl_5921 scaffold_11 + retained_intron 9926131-9926272 asmbl_5922 // Retained and Spliced Intron # retained_intron 10322368-10322453 (orient:+) max_ev_support = 1 # spliced_intron 10322368-10322453 (orient:+) max_ev_support = 2 scaffold_11 + intron 10322368-10322453 asmbl_5934 scaffold_11 + retained_intron 10322368-10322453 asmbl_5935 // Retained and Spliced Intron # retained_intron 10398841-10399063 (orient:+) max_ev_support = 1 # spliced_intron 10398841-10399063 (orient:+) max_ev_support = 2 scaffold_11 + intron 10398841-10399063 asmbl_5939,asmbl_5940 scaffold_11 + retained_intron 10398841-10399063 asmbl_5942 // Retained and Spliced Intron # retained_intron 10398883-10399063 (orient:+) max_ev_support = 1 # spliced_intron 10398883-10399063 (orient:+) max_ev_support = 1 scaffold_11 + intron 10398883-10399063 asmbl_5941,asmbl_5943 scaffold_11 + retained_intron 10398883-10399063 asmbl_5942 // Exon Skipping and Retention # skipped_exon 11640396-11641468 (orient:+) max_ev_support = 1 # retained_exon 11641270-11641333 (orient:+) max_ev_support = 2 scaffold_11 + retained_exons 11641270-11641333 asmbl_5980,asmbl_5989 scaffold_11 + intron_skips_exon 11640396-11641468 asmbl_5982 // Retained and Spliced Intron # retained_intron 11640396-11641269 (orient:+) max_ev_support = 1 # spliced_intron 11640396-11641269 (orient:+) max_ev_support = 2 scaffold_11 + intron 11640396-11641269 asmbl_5980,asmbl_5989 scaffold_11 + retained_intron 11640396-11641269 asmbl_5983,asmbl_5984,asmbl_5986,asmbl_5987,asmbl_5988 // Retained and Spliced Intron # retained_intron 11640396-11641468 (orient:+) max_ev_support = 1 # spliced_intron 11640396-11641468 (orient:+) max_ev_support = 1 scaffold_11 + intron 11640396-11641468 asmbl_5982 scaffold_11 + retained_intron 11640396-11641468 asmbl_5984,asmbl_5986,asmbl_5987,asmbl_5988 // Retained and Spliced Intron # retained_intron 11641334-11641468 (orient:+) max_ev_support = 1 # spliced_intron 11641334-11641468 (orient:+) max_ev_support = 2 scaffold_11 + intron 11641334-11641468 asmbl_5980,asmbl_5983,asmbl_5989 scaffold_11 + retained_intron 11641334-11641468 asmbl_5984,asmbl_5986,asmbl_5987,asmbl_5988 // Retained and Spliced Intron # retained_intron 11641796-11641901 (orient:+) max_ev_support = 1 # spliced_intron 11641796-11641901 (orient:+) max_ev_support = 2 scaffold_11 + intron 11641796-11641901 asmbl_5980,asmbl_5982,asmbl_5983,asmbl_5986,asmbl_5987,asmbl_5988,asmbl_5989 scaffold_11 + retained_intron 11641796-11641901 asmbl_5984 // Retained and Spliced Intron # retained_intron 11639424-11639532 (orient:+) max_ev_support = 1 # spliced_intron 11639424-11639532 (orient:+) max_ev_support = 2 scaffold_11 + intron 11639424-11639532 asmbl_5980,asmbl_5982,asmbl_5983,asmbl_5984,asmbl_5986,asmbl_5987,asmbl_5988 scaffold_11 + retained_intron 11639424-11639532 asmbl_5985 // Retained and Spliced Intron # retained_intron 11641641-11641750 (orient:+) max_ev_support = 1 # spliced_intron 11641641-11641750 (orient:+) max_ev_support = 2 scaffold_11 + intron 11641641-11641750 asmbl_5980,asmbl_5982,asmbl_5983,asmbl_5984,asmbl_5987,asmbl_5988,asmbl_5989 scaffold_11 + retained_intron 11641641-11641750 asmbl_5986 // Retained and Spliced Intron # retained_intron 11785562-11785678 (orient:+) max_ev_support = 1 # spliced_intron 11785562-11785678 (orient:+) max_ev_support = 1 scaffold_11 + intron 11785562-11785678 asmbl_5999 scaffold_11 + retained_intron 11785562-11785678 asmbl_5998 // Retained and Spliced Intron # retained_intron 13092586-13094447 (orient:+) max_ev_support = 5 # spliced_intron 13092586-13094447 (orient:+) max_ev_support = 2 scaffold_11 + intron 13092586-13094447 asmbl_6034,asmbl_6035 scaffold_11 + retained_intron 13092586-13094447 asmbl_6033 // Retained and Spliced Intron # retained_intron 13092994-13093788 (orient:+) max_ev_support = 2 # spliced_intron 13092994-13093788 (orient:+) max_ev_support = 2 scaffold_11 + intron 13092994-13093788 asmbl_6032 scaffold_11 + retained_intron 13092994-13093788 asmbl_6033 // Exon Skipping and Retention # skipped_exon 13097080-13097573 (orient:+) max_ev_support = 1 # retained_exon 13097278-13097364 (orient:+) max_ev_support = 2 scaffold_11 + retained_exons 13097278-13097364 asmbl_6033,asmbl_6034 scaffold_11 + intron_skips_exon 13097080-13097573 asmbl_6032,asmbl_6035 // Retained and Spliced Intron # retained_intron 13256180-13256322 (orient:+) max_ev_support = 2 # spliced_intron 13256180-13256322 (orient:+) max_ev_support = 2 scaffold_11 + intron 13256180-13256322 asmbl_6041 scaffold_11 + retained_intron 13256180-13256322 asmbl_6042,asmbl_6043 // Retained and Spliced Intron # retained_intron 13256356-13256573 (orient:+) max_ev_support = 2 # spliced_intron 13256356-13256573 (orient:+) max_ev_support = 2 scaffold_11 + intron 13256356-13256573 asmbl_6041,asmbl_6042 scaffold_11 + retained_intron 13256356-13256573 asmbl_6043 // Retained and Spliced Intron # retained_intron 13257061-13257404 (orient:+) max_ev_support = 2 # spliced_intron 13257061-13257404 (orient:+) max_ev_support = 2 scaffold_11 + intron 13257061-13257404 asmbl_6041,asmbl_6042 scaffold_11 + retained_intron 13257061-13257404 asmbl_6044 // Retained and Spliced Intron # retained_intron 13384103-13384406 (orient:+) max_ev_support = 1 # spliced_intron 13384103-13384406 (orient:+) max_ev_support = 2 scaffold_11 + intron 13384103-13384406 asmbl_6052 scaffold_11 + retained_intron 13384103-13384406 asmbl_6053,asmbl_6054,asmbl_6055 // Retained and Spliced Intron # retained_intron 13541271-13541378 (orient:+) max_ev_support = 2 # spliced_intron 13541271-13541378 (orient:+) max_ev_support = 3 scaffold_11 + intron 13541271-13541378 asmbl_6060 scaffold_11 + retained_intron 13541271-13541378 asmbl_6061,asmbl_6062 // Retained and Spliced Intron # retained_intron 13541556-13541653 (orient:+) max_ev_support = 2 # spliced_intron 13541556-13541653 (orient:+) max_ev_support = 3 scaffold_11 + intron 13541556-13541653 asmbl_6060,asmbl_6062 scaffold_11 + retained_intron 13541556-13541653 asmbl_6061 // Retained and Spliced Intron # retained_intron 14528202-14528402 (orient:+) max_ev_support = 1 # spliced_intron 14528202-14528402 (orient:+) max_ev_support = 2 scaffold_11 + intron 14528202-14528402 asmbl_6087 scaffold_11 + retained_intron 14528202-14528402 asmbl_6088 // Exon Skipping and Retention # skipped_exon 14532679-14533569 (orient:+) max_ev_support = 3 # retained_exon 14532929-14532976 (orient:+) max_ev_support = 3 scaffold_11 + retained_exons 14532929-14532976 asmbl_6090 scaffold_11 + intron_skips_exon 14532679-14533569 asmbl_6089 // Retained and Spliced Intron # retained_intron 14532679-14532928 (orient:+) max_ev_support = 2 # spliced_intron 14532679-14532928 (orient:+) max_ev_support = 3 scaffold_11 + intron 14532679-14532928 asmbl_6090 scaffold_11 + retained_intron 14532679-14532928 asmbl_6091,asmbl_6092 // Retained and Spliced Intron # retained_intron 14532679-14533569 (orient:+) max_ev_support = 2 # spliced_intron 14532679-14533569 (orient:+) max_ev_support = 3 scaffold_11 + intron 14532679-14533569 asmbl_6089 scaffold_11 + retained_intron 14532679-14533569 asmbl_6091,asmbl_6092 // Retained and Spliced Intron # retained_intron 14532977-14533569 (orient:+) max_ev_support = 2 # spliced_intron 14532977-14533569 (orient:+) max_ev_support = 3 scaffold_11 + intron 14532977-14533569 asmbl_6090 scaffold_11 + retained_intron 14532977-14533569 asmbl_6091,asmbl_6092 // Retained and Spliced Intron # retained_intron 14533655-14533915 (orient:+) max_ev_support = 2 # spliced_intron 14533655-14533915 (orient:+) max_ev_support = 3 scaffold_11 + intron 14533655-14533915 asmbl_6089,asmbl_6090,asmbl_6092 scaffold_11 + retained_intron 14533655-14533915 asmbl_6091 // Retained and Spliced Intron # retained_intron 14587104-14587452 (orient:+) max_ev_support = 1 # spliced_intron 14587104-14587452 (orient:+) max_ev_support = 2 scaffold_11 + intron 14587104-14587452 asmbl_6096,asmbl_6100 scaffold_11 + retained_intron 14587104-14587452 asmbl_6098,asmbl_6099 // Retained and Spliced Intron # retained_intron 14587104-14588383 (orient:+) max_ev_support = 1 # spliced_intron 14587104-14588383 (orient:+) max_ev_support = 2 scaffold_11 + intron 14587104-14588383 asmbl_6095 scaffold_11 + retained_intron 14587104-14588383 asmbl_6098,asmbl_6099 // Retained and Spliced Intron # retained_intron 14794936-14794956 (orient:+) max_ev_support = 1 # spliced_intron 14794936-14794956 (orient:+) max_ev_support = 1 scaffold_11 + intron 14794936-14794956 asmbl_6102 scaffold_11 + retained_intron 14794936-14794956 asmbl_6101 // Retained and Spliced Intron # retained_intron 15637023-15637151 (orient:+) max_ev_support = 1 # spliced_intron 15637023-15637151 (orient:+) max_ev_support = 2 scaffold_11 + intron 15637023-15637151 asmbl_6120 scaffold_11 + retained_intron 15637023-15637151 asmbl_6121 // Retained and Spliced Intron # retained_intron 16649266-16649558 (orient:+) max_ev_support = 3 # spliced_intron 16649266-16649558 (orient:+) max_ev_support = 2 scaffold_11 + intron 16649266-16649558 asmbl_6167 scaffold_11 + retained_intron 16649266-16649558 asmbl_6166 // Retained and Spliced Intron # retained_intron 16651862-16652153 (orient:+) max_ev_support = 1 # spliced_intron 16651862-16652153 (orient:+) max_ev_support = 2 scaffold_11 + intron 16651862-16652153 asmbl_6168 scaffold_11 + retained_intron 16651862-16652153 asmbl_6169 // Retained and Spliced Intron # retained_intron 16652240-16652614 (orient:+) max_ev_support = 2 # spliced_intron 16652240-16652614 (orient:+) max_ev_support = 2 scaffold_11 + intron 16652240-16652614 asmbl_6168 scaffold_11 + retained_intron 16652240-16652614 asmbl_6169 // Retained and Spliced Intron # retained_intron 16755265-16755293 (orient:+) max_ev_support = 2 # spliced_intron 16755265-16755293 (orient:+) max_ev_support = 1 scaffold_11 + intron 16755265-16755293 asmbl_6174 scaffold_11 + retained_intron 16755265-16755293 asmbl_6176 // Retained and Spliced Intron # retained_intron 17095575-17095790 (orient:+) max_ev_support = 2 # spliced_intron 17095575-17095790 (orient:+) max_ev_support = 2 scaffold_11 + intron 17095575-17095790 asmbl_6194 scaffold_11 + retained_intron 17095575-17095790 asmbl_6193,asmbl_6195 // Exon Skipping and Retention # skipped_exon 17099044-17101007 (orient:+) max_ev_support = 1 # retained_exon 17100753-17100818 (orient:+) max_ev_support = 3 scaffold_11 + retained_exons 17100753-17100818 asmbl_6193,asmbl_6194 scaffold_11 + intron_skips_exon 17099044-17101007 asmbl_6195 // Retained and Spliced Intron # retained_intron 17336336-17336476 (orient:+) max_ev_support = 1 # spliced_intron 17336336-17336476 (orient:+) max_ev_support = 4 scaffold_11 + intron 17336336-17336476 asmbl_6211 scaffold_11 + retained_intron 17336336-17336476 asmbl_6212,asmbl_6213 // Retained and Spliced Intron # retained_intron 17374697-17374848 (orient:+) max_ev_support = 2 # spliced_intron 17374697-17374848 (orient:+) max_ev_support = 2 scaffold_11 + intron 17374697-17374848 asmbl_6220,asmbl_6223,asmbl_6224,asmbl_6225 scaffold_11 + retained_intron 17374697-17374848 asmbl_6221 // Retained and Spliced Intron # retained_intron 17375833-17376038 (orient:+) max_ev_support = 2 # spliced_intron 17375833-17376038 (orient:+) max_ev_support = 2 scaffold_11 + intron 17375833-17376038 asmbl_6220,asmbl_6223,asmbl_6224,asmbl_6225 scaffold_11 + retained_intron 17375833-17376038 asmbl_6222 // Retained and Spliced Intron # retained_intron 17376092-17376187 (orient:+) max_ev_support = 2 # spliced_intron 17376092-17376187 (orient:+) max_ev_support = 2 scaffold_11 + intron 17376092-17376187 asmbl_6220,asmbl_6223,asmbl_6224,asmbl_6225 scaffold_11 + retained_intron 17376092-17376187 asmbl_6222 // Exon Skipping and Retention # skipped_exon 17374271-17374612 (orient:+) max_ev_support = 2 # retained_exon 17374441-17374452 (orient:+) max_ev_support = 1 scaffold_11 + retained_exons 17374441-17374452 asmbl_6223 scaffold_11 + intron_skips_exon 17374271-17374612 asmbl_6220,asmbl_6224 // Retained and Spliced Intron # retained_intron 147614-147643 (orient:-) max_ev_support = 1 # spliced_intron 147614-147643 (orient:-) max_ev_support = 1 scaffold_11 - intron 147614-147643 asmbl_6376 scaffold_11 - retained_intron 147614-147643 asmbl_6375 // Retained and Spliced Intron # retained_intron 224369-224543 (orient:-) max_ev_support = 1 # spliced_intron 224369-224543 (orient:-) max_ev_support = 1 scaffold_11 - intron 224369-224543 asmbl_6385 scaffold_11 - retained_intron 224369-224543 asmbl_6386 // Retained and Spliced Intron # retained_intron 262676-262775 (orient:-) max_ev_support = 1 # spliced_intron 262676-262775 (orient:-) max_ev_support = 2 scaffold_11 - intron 262676-262775 asmbl_6389,asmbl_6391 scaffold_11 - retained_intron 262676-262775 asmbl_6390 // Retained and Spliced Intron # retained_intron 262237-262334 (orient:-) max_ev_support = 1 # spliced_intron 262237-262334 (orient:-) max_ev_support = 2 scaffold_11 - intron 262237-262334 asmbl_6389,asmbl_6390 scaffold_11 - retained_intron 262237-262334 asmbl_6391 // Retained and Spliced Intron # retained_intron 1286462-1286567 (orient:-) max_ev_support = 1 # spliced_intron 1286462-1286567 (orient:-) max_ev_support = 3 scaffold_11 - intron 1286462-1286567 asmbl_6420 scaffold_11 - retained_intron 1286462-1286567 asmbl_6421 // Retained and Spliced Intron # retained_intron 1286686-1286928 (orient:-) max_ev_support = 1 # spliced_intron 1286686-1286928 (orient:-) max_ev_support = 3 scaffold_11 - intron 1286686-1286928 asmbl_6420 scaffold_11 - retained_intron 1286686-1286928 asmbl_6421 // Retained and Spliced Intron # retained_intron 1285094-1285198 (orient:-) max_ev_support = 1 # spliced_intron 1285094-1285198 (orient:-) max_ev_support = 3 scaffold_11 - intron 1285094-1285198 asmbl_6420,asmbl_6421,asmbl_6423 scaffold_11 - retained_intron 1285094-1285198 asmbl_6422 // Retained and Spliced Intron # retained_intron 1304892-1305131 (orient:-) max_ev_support = 2 # spliced_intron 1304892-1305131 (orient:-) max_ev_support = 2 scaffold_11 - intron 1304892-1305131 asmbl_6427 scaffold_11 - retained_intron 1304892-1305131 asmbl_6428 // Retained and Spliced Intron # retained_intron 1305168-1305286 (orient:-) max_ev_support = 2 # spliced_intron 1305168-1305286 (orient:-) max_ev_support = 2 scaffold_11 - intron 1305168-1305286 asmbl_6427 scaffold_11 - retained_intron 1305168-1305286 asmbl_6428 // Retained and Spliced Intron # retained_intron 1605150-1605247 (orient:-) max_ev_support = 1 # spliced_intron 1605150-1605247 (orient:-) max_ev_support = 1 scaffold_11 - intron 1605150-1605247 asmbl_6443 scaffold_11 - retained_intron 1605150-1605247 asmbl_6444 // Retained and Spliced Intron # retained_intron 1809111-1809270 (orient:-) max_ev_support = 1 # spliced_intron 1809111-1809270 (orient:-) max_ev_support = 1 scaffold_11 - intron 1809111-1809270 asmbl_6448 scaffold_11 - retained_intron 1809111-1809270 asmbl_6447 // Retained and Spliced Intron # retained_intron 1981821-1981961 (orient:-) max_ev_support = 2 # spliced_intron 1981821-1981961 (orient:-) max_ev_support = 2 scaffold_11 - intron 1981821-1981961 asmbl_6459,asmbl_6461 scaffold_11 - retained_intron 1981821-1981961 asmbl_6460 // Retained and Spliced Intron # retained_intron 1982041-1982111 (orient:-) max_ev_support = 2 # spliced_intron 1982041-1982111 (orient:-) max_ev_support = 2 scaffold_11 - intron 1982041-1982111 asmbl_6459 scaffold_11 - retained_intron 1982041-1982111 asmbl_6460,asmbl_6461 // Retained and Spliced Intron # retained_intron 1983670-1983757 (orient:-) max_ev_support = 1 # spliced_intron 1983670-1983757 (orient:-) max_ev_support = 2 scaffold_11 - intron 1983670-1983757 asmbl_6462 scaffold_11 - retained_intron 1983670-1983757 asmbl_6463 // Retained and Spliced Intron # retained_intron 1983670-1984066 (orient:-) max_ev_support = 3 # spliced_intron 1983670-1984066 (orient:-) max_ev_support = 1 scaffold_11 - intron 1983670-1984066 asmbl_6464,asmbl_6465 scaffold_11 - retained_intron 1983670-1984066 asmbl_6463 // Retained and Spliced Intron # retained_intron 1983288-1983379 (orient:-) max_ev_support = 1 # spliced_intron 1983288-1983379 (orient:-) max_ev_support = 2 scaffold_11 - intron 1983288-1983379 asmbl_6462,asmbl_6463,asmbl_6464 scaffold_11 - retained_intron 1983288-1983379 asmbl_6465 // Exon Skipping and Retention # skipped_exon 2099318-2099760 (orient:-) max_ev_support = 2 # retained_exon 2099402-2099454 (orient:-) max_ev_support = 2 scaffold_11 - retained_exons 2099402-2099454 asmbl_6473,asmbl_6475 scaffold_11 - intron_skips_exon 2099318-2099760 asmbl_6474,asmbl_6476 // Retained and Spliced Intron # retained_intron 2446142-2446175 (orient:-) max_ev_support = 3 # spliced_intron 2446142-2446175 (orient:-) max_ev_support = 1 scaffold_11 - intron 2446142-2446175 asmbl_6503 scaffold_11 - retained_intron 2446142-2446175 asmbl_6501,asmbl_6502 // Retained and Spliced Intron # retained_intron 2500321-2500474 (orient:-) max_ev_support = 2 # spliced_intron 2500321-2500474 (orient:-) max_ev_support = 2 scaffold_11 - intron 2500321-2500474 asmbl_6510 scaffold_11 - retained_intron 2500321-2500474 asmbl_6511 // Exon Skipping and Retention # skipped_exon 2845737-2846051 (orient:-) max_ev_support = 3 # retained_exon 2845822-2845940 (orient:-) max_ev_support = 3 scaffold_11 - retained_exons 2845822-2845940 asmbl_6517 scaffold_11 - intron_skips_exon 2845737-2846051 asmbl_6518 // Retained and Spliced Intron # retained_intron 3110813-3110881 (orient:-) max_ev_support = 2 # spliced_intron 3110813-3110881 (orient:-) max_ev_support = 2 scaffold_11 - intron 3110813-3110881 asmbl_6528 scaffold_11 - retained_intron 3110813-3110881 asmbl_6529 // Retained and Spliced Intron # retained_intron 3140143-3140263 (orient:-) max_ev_support = 2 # spliced_intron 3140143-3140263 (orient:-) max_ev_support = 2 scaffold_11 - intron 3140143-3140263 asmbl_6531 scaffold_11 - retained_intron 3140143-3140263 asmbl_6532 // Retained and Spliced Intron # retained_intron 3252760-3253016 (orient:-) max_ev_support = 2 # spliced_intron 3252760-3253016 (orient:-) max_ev_support = 1 scaffold_11 - intron 3252760-3253016 asmbl_6546 scaffold_11 - retained_intron 3252760-3253016 asmbl_6544,asmbl_6545 // Retained and Spliced Intron # retained_intron 3300926-3300997 (orient:-) max_ev_support = 1 # spliced_intron 3300926-3300997 (orient:-) max_ev_support = 2 scaffold_11 - intron 3300926-3300997 asmbl_6547 scaffold_11 - retained_intron 3300926-3300997 asmbl_6548 // Exon Skipping and Retention # skipped_exon 3556958-3559422 (orient:-) max_ev_support = 1 # retained_exon 3558136-3558269 (orient:-) max_ev_support = 2 scaffold_11 - retained_exons 3558136-3558269 asmbl_6550,asmbl_6551 scaffold_11 - intron_skips_exon 3556958-3559422 asmbl_6552 // Exon Skipping and Retention # skipped_exon 3607163-3608883 (orient:-) max_ev_support = 2 # retained_exon 3607603-3607716 (orient:-) max_ev_support = 2 scaffold_11 - retained_exons 3607603-3607716 asmbl_6556 scaffold_11 - intron_skips_exon 3607163-3608883 asmbl_6557 // Exon Skipping and Retention # skipped_exon 3767492-3770068 (orient:-) max_ev_support = 2 # retained_exon 3768626-3768939 (orient:-) max_ev_support = 1 scaffold_11 - retained_exons 3768626-3768679,3768860-3768939 asmbl_6576 scaffold_11 - intron_skips_exon 3767492-3770068 asmbl_6574,asmbl_6575 // Retained and Spliced Intron # retained_intron 3767045-3767446 (orient:-) max_ev_support = 2 # spliced_intron 3767045-3767446 (orient:-) max_ev_support = 2 scaffold_11 - intron 3767045-3767446 asmbl_6574,asmbl_6575,asmbl_6576,asmbl_6577,asmbl_6580 scaffold_11 - retained_intron 3767045-3767446 asmbl_6578 // Retained and Spliced Intron # retained_intron 3767796-3767816 (orient:-) max_ev_support = 2 # spliced_intron 3767796-3767816 (orient:-) max_ev_support = 1 scaffold_11 - intron 3767796-3767816 asmbl_6577 scaffold_11 - retained_intron 3767796-3767816 asmbl_6578,asmbl_6580 // Exon Skipping and Retention # skipped_exon 4332758-4334217 (orient:-) max_ev_support = 2 # retained_exon 4333202-4333222 (orient:-) max_ev_support = 1 scaffold_11 - retained_exons 4333202-4333222 asmbl_6600 scaffold_11 - intron_skips_exon 4332758-4334217 asmbl_6596,asmbl_6598 // Exon Skipping and Retention # skipped_exon 4672046-4673293 (orient:-) max_ev_support = 2 # retained_exon 4672820-4673002 (orient:-) max_ev_support = 2 scaffold_11 - retained_exons 4672820-4673002 asmbl_6609,asmbl_6615 scaffold_11 - intron_skips_exon 4672046-4673293 asmbl_6610,asmbl_6611,asmbl_6612,asmbl_6616 // Exon Skipping and Retention # skipped_exon 4674969-4676447 (orient:-) max_ev_support = 2 # retained_exon 4675629-4675850 (orient:-) max_ev_support = 2 scaffold_11 - retained_exons 4675629-4675850 asmbl_6609,asmbl_6616 scaffold_11 - intron_skips_exon 4674969-4676447 asmbl_6610,asmbl_6611,asmbl_6615 // Retained and Spliced Intron # retained_intron 4744838-4745154 (orient:-) max_ev_support = 1 # spliced_intron 4744838-4745154 (orient:-) max_ev_support = 2 scaffold_11 - intron 4744838-4745154 asmbl_6623 scaffold_11 - retained_intron 4744838-4745154 asmbl_6625 // Retained and Spliced Intron # retained_intron 4744838-4745192 (orient:-) max_ev_support = 1 # spliced_intron 4744838-4745192 (orient:-) max_ev_support = 2 scaffold_11 - intron 4744838-4745192 asmbl_6622,asmbl_6624,asmbl_6626,asmbl_6627 scaffold_11 - retained_intron 4744838-4745192 asmbl_6625 // Retained and Spliced Intron # retained_intron 4745326-4745491 (orient:-) max_ev_support = 1 # spliced_intron 4745326-4745491 (orient:-) max_ev_support = 2 scaffold_11 - intron 4745326-4745491 asmbl_6622,asmbl_6623,asmbl_6624,asmbl_6626,asmbl_6627 scaffold_11 - retained_intron 4745326-4745491 asmbl_6625 // Retained and Spliced Intron # retained_intron 4744010-4744101 (orient:-) max_ev_support = 1 # spliced_intron 4744010-4744101 (orient:-) max_ev_support = 2 scaffold_11 - intron 4744010-4744101 asmbl_6622,asmbl_6623,asmbl_6624,asmbl_6625 scaffold_11 - retained_intron 4744010-4744101 asmbl_6626 // Retained and Spliced Intron # retained_intron 4759832-4760026 (orient:-) max_ev_support = 2 # spliced_intron 4759832-4760026 (orient:-) max_ev_support = 2 scaffold_11 - intron 4759832-4760026 asmbl_6629,asmbl_6632,asmbl_6633 scaffold_11 - retained_intron 4759832-4760026 asmbl_6630 // Retained and Spliced Intron # retained_intron 4760580-4761026 (orient:-) max_ev_support = 2 # spliced_intron 4760580-4761026 (orient:-) max_ev_support = 2 scaffold_11 - intron 4760580-4761026 asmbl_6629,asmbl_6633 scaffold_11 - retained_intron 4760580-4761026 asmbl_6631,asmbl_6632 // Retained and Spliced Intron # retained_intron 4759244-4759351 (orient:-) max_ev_support = 1 # spliced_intron 4759244-4759351 (orient:-) max_ev_support = 2 scaffold_11 - intron 4759244-4759351 asmbl_6629,asmbl_6632 scaffold_11 - retained_intron 4759244-4759351 asmbl_6633 // Exon Skipping and Retention # skipped_exon 5125046-5125362 (orient:-) max_ev_support = 1 # retained_exon 5125187-5125245 (orient:-) max_ev_support = 2 scaffold_11 - retained_exons 5125187-5125245 asmbl_6654 scaffold_11 - intron_skips_exon 5125046-5125362 asmbl_6656 // Retained and Spliced Intron # retained_intron 5501775-5501898 (orient:-) max_ev_support = 2 # spliced_intron 5501775-5501898 (orient:-) max_ev_support = 1 scaffold_11 - intron 5501775-5501898 asmbl_6667 scaffold_11 - retained_intron 5501775-5501898 asmbl_6664,asmbl_6666 // Retained and Spliced Intron # retained_intron 5501775-5502119 (orient:-) max_ev_support = 2 # spliced_intron 5501775-5502119 (orient:-) max_ev_support = 2 scaffold_11 - intron 5501775-5502119 asmbl_6665 scaffold_11 - retained_intron 5501775-5502119 asmbl_6664,asmbl_6666 // Retained and Spliced Intron # retained_intron 5821149-5821247 (orient:-) max_ev_support = 1 # spliced_intron 5821149-5821247 (orient:-) max_ev_support = 2 scaffold_11 - intron 5821149-5821247 asmbl_6679 scaffold_11 - retained_intron 5821149-5821247 asmbl_6680 // Retained and Spliced Intron # retained_intron 5868618-5868758 (orient:-) max_ev_support = 2 # spliced_intron 5868618-5868758 (orient:-) max_ev_support = 2 scaffold_11 - intron 5868618-5868758 asmbl_6685 scaffold_11 - retained_intron 5868618-5868758 asmbl_6686,asmbl_6688 // Retained and Spliced Intron # retained_intron 5898660-5898777 (orient:-) max_ev_support = 2 # spliced_intron 5898660-5898777 (orient:-) max_ev_support = 2 scaffold_11 - intron 5898660-5898777 asmbl_6693 scaffold_11 - retained_intron 5898660-5898777 asmbl_6692 // Retained and Spliced Intron # retained_intron 6138503-6138584 (orient:-) max_ev_support = 1 # spliced_intron 6138503-6138584 (orient:-) max_ev_support = 2 scaffold_11 - intron 6138503-6138584 asmbl_6699,asmbl_6700,asmbl_6702 scaffold_11 - retained_intron 6138503-6138584 asmbl_6701 // Retained and Spliced Intron # retained_intron 6395847-6395959 (orient:-) max_ev_support = 3 # spliced_intron 6395847-6395959 (orient:-) max_ev_support = 3 scaffold_11 - intron 6395847-6395959 asmbl_6708,asmbl_6711 scaffold_11 - retained_intron 6395847-6395959 asmbl_6707,asmbl_6710 // Retained and Spliced Intron # retained_intron 6534474-6535499 (orient:-) max_ev_support = 2 # spliced_intron 6534474-6535499 (orient:-) max_ev_support = 2 scaffold_11 - intron 6534474-6535499 asmbl_6719 scaffold_11 - retained_intron 6534474-6535499 asmbl_6720 // Exon Skipping and Retention # skipped_exon 6591255-6592422 (orient:-) max_ev_support = 1 # retained_exon 6591304-6591394 (orient:-) max_ev_support = 2 scaffold_11 - retained_exons 6591304-6591394 asmbl_6724,asmbl_6725 scaffold_11 - intron_skips_exon 6591255-6592422 asmbl_6726 // Exon Skipping and Retention # skipped_exon 6613828-6615052 (orient:-) max_ev_support = 2 # retained_exon 6614791-6614888 (orient:-) max_ev_support = 2 scaffold_11 - retained_exons 6614791-6614888 asmbl_6728 scaffold_11 - intron_skips_exon 6613828-6615052 asmbl_6729 // Exon Skipping and Retention # skipped_exon 6711357-6713812 (orient:-) max_ev_support = 1 # retained_exon 6711498-6713217 (orient:-) max_ev_support = 2 scaffold_11 - retained_exons 6711498-6711536,6711975-6712072,6712223-6712390,6712588-6712653,6713121-6713217 asmbl_6735,asmbl_6738,asmbl_6740 scaffold_11 - retained_exons 6711498-6711536,6711975-6712069,6712223-6712390,6712588-6712653,6713121-6713217 asmbl_6737 scaffold_11 - intron_skips_exon 6711357-6713812 asmbl_6736 // Retained and Spliced Intron # retained_intron 6952071-6952149 (orient:-) max_ev_support = 2 # spliced_intron 6952071-6952149 (orient:-) max_ev_support = 2 scaffold_11 - intron 6952071-6952149 asmbl_6747 scaffold_11 - retained_intron 6952071-6952149 asmbl_6746,asmbl_6748,asmbl_6749,asmbl_6750 // Retained and Spliced Intron # retained_intron 6952172-6952274 (orient:-) max_ev_support = 2 # spliced_intron 6952172-6952274 (orient:-) max_ev_support = 2 scaffold_11 - intron 6952172-6952274 asmbl_6746,asmbl_6747,asmbl_6750 scaffold_11 - retained_intron 6952172-6952274 asmbl_6748,asmbl_6749 // Retained and Spliced Intron # retained_intron 8014909-8015006 (orient:-) max_ev_support = 1 # spliced_intron 8014909-8015006 (orient:-) max_ev_support = 2 scaffold_11 - intron 8014909-8015006 asmbl_6816 scaffold_11 - retained_intron 8014909-8015006 asmbl_6817 // Retained and Spliced Intron # retained_intron 8040872-8040989 (orient:-) max_ev_support = 1 # spliced_intron 8040872-8040989 (orient:-) max_ev_support = 2 scaffold_11 - intron 8040872-8040989 asmbl_6818 scaffold_11 - retained_intron 8040872-8040989 asmbl_6819 // Exon Skipping and Retention # skipped_exon 8079062-8079347 (orient:-) max_ev_support = 3 # retained_exon 8079171-8079244 (orient:-) max_ev_support = 3 scaffold_11 - retained_exons 8079171-8079244 asmbl_6824,asmbl_6825,asmbl_6827,asmbl_6832 scaffold_11 - intron_skips_exon 8079062-8079347 asmbl_6826,asmbl_6830,asmbl_6835 // Retained and Spliced Intron # retained_intron 8078462-8078553 (orient:-) max_ev_support = 2 # spliced_intron 8078462-8078553 (orient:-) max_ev_support = 3 scaffold_11 - intron 8078462-8078553 asmbl_6824,asmbl_6825,asmbl_6826,asmbl_6827,asmbl_6830,asmbl_6832,asmbl_6835 scaffold_11 - retained_intron 8078462-8078553 asmbl_6831 // Retained and Spliced Intron # retained_intron 8072873-8072982 (orient:-) max_ev_support = 2 # spliced_intron 8072873-8072982 (orient:-) max_ev_support = 3 scaffold_11 - intron 8072873-8072982 asmbl_6824,asmbl_6825,asmbl_6826,asmbl_6827,asmbl_6828,asmbl_6834 scaffold_11 - retained_intron 8072873-8072982 asmbl_6833 // Retained and Spliced Intron # retained_intron 8073049-8073152 (orient:-) max_ev_support = 2 # spliced_intron 8073049-8073152 (orient:-) max_ev_support = 3 scaffold_11 - intron 8073049-8073152 asmbl_6824,asmbl_6825,asmbl_6826,asmbl_6827,asmbl_6828,asmbl_6834 scaffold_11 - retained_intron 8073049-8073152 asmbl_6833 // Retained and Spliced Intron # retained_intron 8073261-8073486 (orient:-) max_ev_support = 2 # spliced_intron 8073261-8073486 (orient:-) max_ev_support = 3 scaffold_11 - intron 8073261-8073486 asmbl_6824,asmbl_6825,asmbl_6826,asmbl_6827,asmbl_6828,asmbl_6834 scaffold_11 - retained_intron 8073261-8073486 asmbl_6833 // Retained and Spliced Intron # retained_intron 8074409-8074589 (orient:-) max_ev_support = 1 # spliced_intron 8074409-8074589 (orient:-) max_ev_support = 3 scaffold_11 - intron 8074409-8074589 asmbl_6824,asmbl_6825,asmbl_6826,asmbl_6827,asmbl_6828 scaffold_11 - retained_intron 8074409-8074589 asmbl_6834 // Retained and Spliced Intron # retained_intron 8085021-8085159 (orient:-) max_ev_support = 2 # spliced_intron 8085021-8085159 (orient:-) max_ev_support = 3 scaffold_11 - intron 8085021-8085159 asmbl_6836 scaffold_11 - retained_intron 8085021-8085159 asmbl_6837 // Retained and Spliced Intron # retained_intron 8192814-8192909 (orient:-) max_ev_support = 2 # spliced_intron 8192814-8192909 (orient:-) max_ev_support = 3 scaffold_11 - intron 8192814-8192909 asmbl_6850 scaffold_11 - retained_intron 8192814-8192909 asmbl_6852 // Retained and Spliced Intron # retained_intron 8192814-8192980 (orient:-) max_ev_support = 2 # spliced_intron 8192814-8192980 (orient:-) max_ev_support = 3 scaffold_11 - intron 8192814-8192980 asmbl_6851 scaffold_11 - retained_intron 8192814-8192980 asmbl_6852 // Retained and Spliced Intron # retained_intron 8330044-8330165 (orient:-) max_ev_support = 3 # spliced_intron 8330044-8330165 (orient:-) max_ev_support = 3 scaffold_11 - intron 8330044-8330165 asmbl_6856 scaffold_11 - retained_intron 8330044-8330165 asmbl_6857 // Retained and Spliced Intron # retained_intron 8716123-8716595 (orient:-) max_ev_support = 1 # spliced_intron 8716123-8716595 (orient:-) max_ev_support = 2 scaffold_11 - intron 8716123-8716595 asmbl_6869 scaffold_11 - retained_intron 8716123-8716595 asmbl_6870 // Retained and Spliced Intron # retained_intron 8716691-8716938 (orient:-) max_ev_support = 2 # spliced_intron 8716691-8716938 (orient:-) max_ev_support = 2 scaffold_11 - intron 8716691-8716938 asmbl_6869 scaffold_11 - retained_intron 8716691-8716938 asmbl_6870 // Retained and Spliced Intron # retained_intron 8719314-8719523 (orient:-) max_ev_support = 2 # spliced_intron 8719314-8719523 (orient:-) max_ev_support = 2 scaffold_11 - intron 8719314-8719523 asmbl_6873 scaffold_11 - retained_intron 8719314-8719523 asmbl_6872 // Retained and Spliced Intron # retained_intron 8790350-8790437 (orient:-) max_ev_support = 1 # spliced_intron 8790350-8790437 (orient:-) max_ev_support = 1 scaffold_11 - intron 8790350-8790437 asmbl_6876 scaffold_11 - retained_intron 8790350-8790437 asmbl_6875 // Retained and Spliced Intron # retained_intron 8790198-8790335 (orient:-) max_ev_support = 1 # spliced_intron 8790198-8790335 (orient:-) max_ev_support = 1 scaffold_11 - intron 8790198-8790335 asmbl_6875 scaffold_11 - retained_intron 8790198-8790335 asmbl_6876 // Exon Skipping and Retention # skipped_exon 8896554-8898836 (orient:-) max_ev_support = 1 # retained_exon 8898170-8898282 (orient:-) max_ev_support = 1 scaffold_11 - retained_exons 8898170-8898282 asmbl_6883 scaffold_11 - intron_skips_exon 8896554-8898836 asmbl_6884 // Exon Skipping and Retention # skipped_exon 8896235-8898169 (orient:-) max_ev_support = 1 # retained_exon 8896441-8896553 (orient:-) max_ev_support = 1 scaffold_11 - retained_exons 8896441-8896553 asmbl_6884 scaffold_11 - intron_skips_exon 8896235-8898169 asmbl_6883 // Retained and Spliced Intron # retained_intron 9018786-9019232 (orient:-) max_ev_support = 3 # spliced_intron 9018786-9019232 (orient:-) max_ev_support = 2 scaffold_11 - intron 9018786-9019232 asmbl_6902,asmbl_6904,asmbl_6905,asmbl_6906,asmbl_6907 scaffold_11 - retained_intron 9018786-9019232 asmbl_6901,asmbl_6903 // Retained and Spliced Intron # retained_intron 9018053-9018198 (orient:-) max_ev_support = 2 # spliced_intron 9018053-9018198 (orient:-) max_ev_support = 1 scaffold_11 - intron 9018053-9018198 asmbl_6901,asmbl_6904,asmbl_6905 scaffold_11 - retained_intron 9018053-9018198 asmbl_6902 // Retained and Spliced Intron # retained_intron 9018627-9018713 (orient:-) max_ev_support = 2 # spliced_intron 9018627-9018713 (orient:-) max_ev_support = 3 scaffold_11 - intron 9018627-9018713 asmbl_6901,asmbl_6902,asmbl_6904,asmbl_6905,asmbl_6906,asmbl_6907 scaffold_11 - retained_intron 9018627-9018713 asmbl_6903 // Retained and Spliced Intron # retained_intron 9020369-9020489 (orient:-) max_ev_support = 1 # spliced_intron 9020369-9020489 (orient:-) max_ev_support = 2 scaffold_11 - intron 9020369-9020489 asmbl_6902,asmbl_6905,asmbl_6906,asmbl_6907 scaffold_11 - retained_intron 9020369-9020489 asmbl_6904 // Retained and Spliced Intron # retained_intron 9021079-9021443 (orient:-) max_ev_support = 1 # spliced_intron 9021079-9021443 (orient:-) max_ev_support = 2 scaffold_11 - intron 9021079-9021443 asmbl_6902,asmbl_6905,asmbl_6906,asmbl_6907 scaffold_11 - retained_intron 9021079-9021443 asmbl_6904 // Retained and Spliced Intron # retained_intron 9083178-9083266 (orient:-) max_ev_support = 3 # spliced_intron 9083178-9083266 (orient:-) max_ev_support = 1 scaffold_11 - intron 9083178-9083266 asmbl_6911,asmbl_6912 scaffold_11 - retained_intron 9083178-9083266 asmbl_6910 // Retained and Spliced Intron # retained_intron 9185416-9185879 (orient:-) max_ev_support = 2 # spliced_intron 9185416-9185879 (orient:-) max_ev_support = 3 scaffold_11 - intron 9185416-9185879 asmbl_6919 scaffold_11 - retained_intron 9185416-9185879 asmbl_6920 // Exon Skipping and Retention # skipped_exon 9458170-9459742 (orient:-) max_ev_support = 1 # retained_exon 9458545-9459611 (orient:-) max_ev_support = 2 scaffold_11 - retained_exons 9458545-9458686,9458829-9458897,9459033-9459097,9459552-9459611 asmbl_6931 scaffold_11 - intron_skips_exon 9458170-9459742 asmbl_6932 // Exon Skipping and Retention # skipped_exon 9652425-9653452 (orient:-) max_ev_support = 1 # retained_exon 9652909-9652941 (orient:-) max_ev_support = 2 scaffold_11 - retained_exons 9652909-9652941 asmbl_6942,asmbl_6944 scaffold_11 - intron_skips_exon 9652425-9653452 asmbl_6943 // Retained and Spliced Intron # retained_intron 9680424-9680534 (orient:-) max_ev_support = 2 # spliced_intron 9680424-9680534 (orient:-) max_ev_support = 2 scaffold_11 - intron 9680424-9680534 asmbl_6947 scaffold_11 - retained_intron 9680424-9680534 asmbl_6946 // Retained and Spliced Intron # retained_intron 9693927-9694016 (orient:-) max_ev_support = 2 # spliced_intron 9693927-9694016 (orient:-) max_ev_support = 1 scaffold_11 - intron 9693927-9694016 asmbl_6955 scaffold_11 - retained_intron 9693927-9694016 asmbl_6952,asmbl_6953,asmbl_6954 // Exon Skipping and Retention # skipped_exon 9699517-9700110 (orient:-) max_ev_support = 3 # retained_exon 9699752-9699805 (orient:-) max_ev_support = 2 scaffold_11 - retained_exons 9699752-9699805 asmbl_6953 scaffold_11 - intron_skips_exon 9699517-9700110 asmbl_6952 // Retained and Spliced Intron # retained_intron 9950767-9950860 (orient:-) max_ev_support = 1 # spliced_intron 9950767-9950860 (orient:-) max_ev_support = 1 scaffold_11 - intron 9950767-9950860 asmbl_6971 scaffold_11 - retained_intron 9950767-9950860 asmbl_6970 // Retained and Spliced Intron # retained_intron 9950772-9950860 (orient:-) max_ev_support = 1 # spliced_intron 9950772-9950860 (orient:-) max_ev_support = 2 scaffold_11 - intron 9950772-9950860 asmbl_6969 scaffold_11 - retained_intron 9950772-9950860 asmbl_6970 // Retained and Spliced Intron # retained_intron 10144217-10144522 (orient:-) max_ev_support = 1 # spliced_intron 10144217-10144522 (orient:-) max_ev_support = 1 scaffold_11 - intron 10144217-10144522 asmbl_6983 scaffold_11 - retained_intron 10144217-10144522 asmbl_6982,asmbl_6984 // Retained and Spliced Intron # retained_intron 10145073-10145116 (orient:-) max_ev_support = 1 # spliced_intron 10145073-10145116 (orient:-) max_ev_support = 1 scaffold_11 - intron 10145073-10145116 asmbl_6983,asmbl_6984 scaffold_11 - retained_intron 10145073-10145116 asmbl_6982 // Retained and Spliced Intron # retained_intron 10981902-10982289 (orient:-) max_ev_support = 3 # spliced_intron 10981902-10982289 (orient:-) max_ev_support = 1 scaffold_11 - intron 10981902-10982289 asmbl_7010 scaffold_11 - retained_intron 10981902-10982289 asmbl_7008 // Retained and Spliced Intron # retained_intron 10981968-10982289 (orient:-) max_ev_support = 3 # spliced_intron 10981968-10982289 (orient:-) max_ev_support = 1 scaffold_11 - intron 10981968-10982289 asmbl_7009 scaffold_11 - retained_intron 10981968-10982289 asmbl_7008 // Retained and Spliced Intron # retained_intron 11069659-11070082 (orient:-) max_ev_support = 1 # spliced_intron 11069659-11070082 (orient:-) max_ev_support = 2 scaffold_11 - intron 11069659-11070082 asmbl_7015 scaffold_11 - retained_intron 11069659-11070082 asmbl_7016 // Exon Skipping and Retention # skipped_exon 11571077-11573007 (orient:-) max_ev_support = 1 # retained_exon 11571943-11572610 (orient:-) max_ev_support = 1 scaffold_11 - retained_exons 11571943-11572012,11572497-11572610 asmbl_7022 scaffold_11 - intron_skips_exon 11571077-11573007 asmbl_7023 // Exon Skipping and Retention # skipped_exon 11937192-11937829 (orient:-) max_ev_support = 1 # retained_exon 11937510-11937722 (orient:-) max_ev_support = 1 scaffold_11 - retained_exons 11937510-11937722 asmbl_7042,asmbl_7043 scaffold_11 - intron_skips_exon 11937192-11937829 asmbl_7044 // Exon Skipping and Retention # skipped_exon 11930763-11931395 (orient:-) max_ev_support = 1 # retained_exon 11931003-11931261 (orient:-) max_ev_support = 1 scaffold_11 - retained_exons 11931003-11931047,11931220-11931261 asmbl_7043 scaffold_11 - retained_exons 11931003-11931044,11931220-11931261 asmbl_7044 scaffold_11 - intron_skips_exon 11930763-11931395 asmbl_7042 // Retained and Spliced Intron # retained_intron 11941482-11941526 (orient:-) max_ev_support = 1 # spliced_intron 11941482-11941526 (orient:-) max_ev_support = 1 scaffold_11 - intron 11941482-11941526 asmbl_7044 scaffold_11 - retained_intron 11941482-11941526 asmbl_7043 // Retained and Spliced Intron # retained_intron 11941632-11941758 (orient:-) max_ev_support = 1 # spliced_intron 11941632-11941758 (orient:-) max_ev_support = 1 scaffold_11 - intron 11941632-11941758 asmbl_7044 scaffold_11 - retained_intron 11941632-11941758 asmbl_7043 // Exon Skipping and Retention # skipped_exon 11943634-11944952 (orient:-) max_ev_support = 1 # retained_exon 11943840-11944315 (orient:-) max_ev_support = 1 scaffold_11 - retained_exons 11943840-11943938,11944172-11944315 asmbl_7044,asmbl_7052 scaffold_11 - intron_skips_exon 11943634-11944952 asmbl_7051 // Retained and Spliced Intron # retained_intron 11943331-11943516 (orient:-) max_ev_support = 2 # spliced_intron 11943331-11943516 (orient:-) max_ev_support = 1 scaffold_11 - intron 11943331-11943516 asmbl_7044,asmbl_7051,asmbl_7052 scaffold_11 - retained_intron 11943331-11943516 asmbl_7047 // Retained and Spliced Intron # retained_intron 11943634-11943839 (orient:-) max_ev_support = 2 # spliced_intron 11943634-11943839 (orient:-) max_ev_support = 1 scaffold_11 - intron 11943634-11943839 asmbl_7044,asmbl_7052 scaffold_11 - retained_intron 11943634-11943839 asmbl_7048 // Retained and Spliced Intron # retained_intron 11943939-11944171 (orient:-) max_ev_support = 2 # spliced_intron 11943939-11944171 (orient:-) max_ev_support = 1 scaffold_11 - intron 11943939-11944171 asmbl_7044,asmbl_7052 scaffold_11 - retained_intron 11943939-11944171 asmbl_7049 // Retained and Spliced Intron # retained_intron 11999468-11999662 (orient:-) max_ev_support = 3 # spliced_intron 11999468-11999662 (orient:-) max_ev_support = 3 scaffold_11 - intron 11999468-11999662 asmbl_7057,asmbl_7061 scaffold_11 - retained_intron 11999468-11999662 asmbl_7056 // Retained and Spliced Intron # retained_intron 12071585-12071767 (orient:-) max_ev_support = 2 # spliced_intron 12071585-12071767 (orient:-) max_ev_support = 2 scaffold_11 - intron 12071585-12071767 asmbl_7073 scaffold_11 - retained_intron 12071585-12071767 asmbl_7074 // Retained and Spliced Intron # retained_intron 12377973-12378067 (orient:-) max_ev_support = 1 # spliced_intron 12377973-12378067 (orient:-) max_ev_support = 2 scaffold_11 - intron 12377973-12378067 asmbl_7083 scaffold_11 - retained_intron 12377973-12378067 asmbl_7084 // Exon Skipping and Retention # skipped_exon 12904181-12904897 (orient:-) max_ev_support = 1 # retained_exon 12904599-12904706 (orient:-) max_ev_support = 1 scaffold_11 - retained_exons 12904599-12904706 asmbl_7101 scaffold_11 - intron_skips_exon 12904181-12904897 asmbl_7102,asmbl_7105 // Exon Skipping and Retention # skipped_exon 13035297-13036295 (orient:-) max_ev_support = 2 # retained_exon 13035576-13035747 (orient:-) max_ev_support = 2 scaffold_11 - retained_exons 13035576-13035747 asmbl_7114 scaffold_11 - intron_skips_exon 13035297-13036295 asmbl_7113,asmbl_7116 // Retained and Spliced Intron # retained_intron 13035297-13035575 (orient:-) max_ev_support = 2 # spliced_intron 13035297-13035575 (orient:-) max_ev_support = 2 scaffold_11 - intron 13035297-13035575 asmbl_7114 scaffold_11 - retained_intron 13035297-13035575 asmbl_7115 // Retained and Spliced Intron # retained_intron 13035297-13036295 (orient:-) max_ev_support = 2 # spliced_intron 13035297-13036295 (orient:-) max_ev_support = 2 scaffold_11 - intron 13035297-13036295 asmbl_7113,asmbl_7116 scaffold_11 - retained_intron 13035297-13036295 asmbl_7115 // Retained and Spliced Intron # retained_intron 13035748-13036295 (orient:-) max_ev_support = 2 # spliced_intron 13035748-13036295 (orient:-) max_ev_support = 2 scaffold_11 - intron 13035748-13036295 asmbl_7114 scaffold_11 - retained_intron 13035748-13036295 asmbl_7115 // Retained and Spliced Intron # retained_intron 13033062-13033309 (orient:-) max_ev_support = 1 # spliced_intron 13033062-13033309 (orient:-) max_ev_support = 2 scaffold_11 - intron 13033062-13033309 asmbl_7112,asmbl_7113,asmbl_7114,asmbl_7115 scaffold_11 - retained_intron 13033062-13033309 asmbl_7116 // Retained and Spliced Intron # retained_intron 13252736-13252829 (orient:-) max_ev_support = 2 # spliced_intron 13252736-13252829 (orient:-) max_ev_support = 2 scaffold_11 - intron 13252736-13252829 asmbl_7123,asmbl_7124,asmbl_7125,asmbl_7126 scaffold_11 - retained_intron 13252736-13252829 asmbl_7122,asmbl_7127,asmbl_7128 // Retained and Spliced Intron # retained_intron 13252911-13254374 (orient:-) max_ev_support = 2 # spliced_intron 13252911-13254374 (orient:-) max_ev_support = 2 scaffold_11 - intron 13252911-13254374 asmbl_7122,asmbl_7123 scaffold_11 - retained_intron 13252911-13254374 asmbl_7124,asmbl_7127 // Retained and Spliced Intron # retained_intron 13253413-13253723 (orient:-) max_ev_support = 2 # spliced_intron 13253413-13253723 (orient:-) max_ev_support = 1 scaffold_11 - intron 13253413-13253723 asmbl_7126 scaffold_11 - retained_intron 13253413-13253723 asmbl_7124,asmbl_7125,asmbl_7127,asmbl_7128 // Retained and Spliced Intron # retained_intron 13254292-13254374 (orient:-) max_ev_support = 2 # spliced_intron 13254292-13254374 (orient:-) max_ev_support = 1 scaffold_11 - intron 13254292-13254374 asmbl_7125,asmbl_7128 scaffold_11 - retained_intron 13254292-13254374 asmbl_7124,asmbl_7126,asmbl_7127 // Retained and Spliced Intron # retained_intron 13462527-13462704 (orient:-) max_ev_support = 3 # spliced_intron 13462527-13462704 (orient:-) max_ev_support = 3 scaffold_11 - intron 13462527-13462704 asmbl_7129,asmbl_7131 scaffold_11 - retained_intron 13462527-13462704 asmbl_7130 // Retained and Spliced Intron # retained_intron 13462735-13462822 (orient:-) max_ev_support = 3 # spliced_intron 13462735-13462822 (orient:-) max_ev_support = 3 scaffold_11 - intron 13462735-13462822 asmbl_7129,asmbl_7131 scaffold_11 - retained_intron 13462735-13462822 asmbl_7130 // Retained and Spliced Intron # retained_intron 13462843-13463131 (orient:-) max_ev_support = 3 # spliced_intron 13462843-13463131 (orient:-) max_ev_support = 3 scaffold_11 - intron 13462843-13463131 asmbl_7129 scaffold_11 - retained_intron 13462843-13463131 asmbl_7130,asmbl_7131 // Exon Skipping and Retention # skipped_exon 13576442-13579141 (orient:-) max_ev_support = 2 # retained_exon 13578959-13579057 (orient:-) max_ev_support = 1 scaffold_11 - retained_exons 13578959-13579057 asmbl_7144,asmbl_7145 scaffold_11 - intron_skips_exon 13576442-13579141 asmbl_7141,asmbl_7142 // Retained and Spliced Intron # retained_intron 13593204-13593300 (orient:-) max_ev_support = 3 # spliced_intron 13593204-13593300 (orient:-) max_ev_support = 1 scaffold_11 - intron 13593204-13593300 asmbl_7148 scaffold_11 - retained_intron 13593204-13593300 asmbl_7147,asmbl_7149 // Retained and Spliced Intron # retained_intron 13593399-13593726 (orient:-) max_ev_support = 3 # spliced_intron 13593399-13593726 (orient:-) max_ev_support = 1 scaffold_11 - intron 13593399-13593726 asmbl_7148,asmbl_7149 scaffold_11 - retained_intron 13593399-13593726 asmbl_7147 // Retained and Spliced Intron # retained_intron 15655831-15655930 (orient:-) max_ev_support = 1 # spliced_intron 15655831-15655930 (orient:-) max_ev_support = 2 scaffold_11 - intron 15655831-15655930 asmbl_7199,asmbl_7200,asmbl_7202,asmbl_7203,asmbl_7204,asmbl_7205 scaffold_11 - retained_intron 15655831-15655930 asmbl_7197,asmbl_7198 // Retained and Spliced Intron # retained_intron 15656260-15657450 (orient:-) max_ev_support = 3 # spliced_intron 15656260-15657450 (orient:-) max_ev_support = 2 scaffold_11 - intron 15656260-15657450 asmbl_7199,asmbl_7200,asmbl_7202,asmbl_7203,asmbl_7204,asmbl_7205 scaffold_11 - retained_intron 15656260-15657450 asmbl_7197,asmbl_7198 // Retained and Spliced Intron # retained_intron 15653309-15653408 (orient:-) max_ev_support = 2 # spliced_intron 15653309-15653408 (orient:-) max_ev_support = 2 scaffold_11 - intron 15653309-15653408 asmbl_7197,asmbl_7198,asmbl_7200,asmbl_7203 scaffold_11 - retained_intron 15653309-15653408 asmbl_7199,asmbl_7202 // Retained and Spliced Intron # retained_intron 15653766-15653915 (orient:-) max_ev_support = 1 # spliced_intron 15653766-15653915 (orient:-) max_ev_support = 2 scaffold_11 - intron 15653766-15653915 asmbl_7197,asmbl_7198,asmbl_7199,asmbl_7200,asmbl_7202,asmbl_7203 scaffold_11 - retained_intron 15653766-15653915 asmbl_7204,asmbl_7205 // Retained and Spliced Intron # retained_intron 15687955-15688379 (orient:-) max_ev_support = 4 # spliced_intron 15687955-15688379 (orient:-) max_ev_support = 2 scaffold_11 - intron 15687955-15688379 asmbl_7211 scaffold_11 - retained_intron 15687955-15688379 asmbl_7210 // Exon Skipping and Retention # skipped_exon 16484013-16486899 (orient:-) max_ev_support = 1 # retained_exon 16485120-16485279 (orient:-) max_ev_support = 1 scaffold_11 - retained_exons 16485120-16485279 asmbl_7226 scaffold_11 - intron_skips_exon 16484013-16486899 asmbl_7224 // Retained and Spliced Intron # retained_intron 17086528-17087549 (orient:-) max_ev_support = 3 # spliced_intron 17086528-17087549 (orient:-) max_ev_support = 1 scaffold_11 - intron 17086528-17087549 asmbl_7250,asmbl_7252,asmbl_7253 scaffold_11 - retained_intron 17086528-17087549 asmbl_7245 // Retained and Spliced Intron # retained_intron 17084164-17084320 (orient:-) max_ev_support = 2 # spliced_intron 17084164-17084320 (orient:-) max_ev_support = 1 scaffold_11 - intron 17084164-17084320 asmbl_7248,asmbl_7251,asmbl_7252 scaffold_11 - retained_intron 17084164-17084320 asmbl_7246,asmbl_7247,asmbl_7249,asmbl_7250,asmbl_7253 // Retained and Spliced Intron # retained_intron 17084606-17085018 (orient:-) max_ev_support = 2 # spliced_intron 17084606-17085018 (orient:-) max_ev_support = 2 scaffold_11 - intron 17084606-17085018 asmbl_7247,asmbl_7248,asmbl_7249,asmbl_7250,asmbl_7251,asmbl_7252,asmbl_7253 scaffold_11 - retained_intron 17084606-17085018 asmbl_7246 // Exon Skipping and Retention # skipped_exon 17085466-17087549 (orient:-) max_ev_support = 2 # retained_exon 17086459-17086527 (orient:-) max_ev_support = 1 scaffold_11 - retained_exons 17086459-17086527 asmbl_7250,asmbl_7252 scaffold_11 - intron_skips_exon 17085466-17087549 asmbl_7247,asmbl_7248 // Exon Skipping and Retention # skipped_exon 17085466-17087549 (orient:-) max_ev_support = 2 # retained_exon 17086462-17086527 (orient:-) max_ev_support = 1 scaffold_11 - retained_exons 17086462-17086527 asmbl_7253 scaffold_11 - intron_skips_exon 17085466-17087549 asmbl_7247,asmbl_7248 // Retained and Spliced Intron # retained_intron 17277488-17277700 (orient:-) max_ev_support = 2 # spliced_intron 17277488-17277700 (orient:-) max_ev_support = 1 scaffold_11 - intron 17277488-17277700 asmbl_7260 scaffold_11 - retained_intron 17277488-17277700 asmbl_7259 // Exon Skipping and Retention # skipped_exon 17293563-17294318 (orient:-) max_ev_support = 2 # retained_exon 17293756-17293837 (orient:-) max_ev_support = 2 scaffold_11 - retained_exons 17293756-17293837 asmbl_7263 scaffold_11 - intron_skips_exon 17293563-17294318 asmbl_7262 // Exon Skipping and Retention # skipped_exon 6874-7192 (orient:+) max_ev_support = 3 # retained_exon 7050-7115 (orient:+) max_ev_support = 3 scaffold_111 + retained_exons 7050-7115 asmbl_7392 scaffold_111 + intron_skips_exon 6874-7192 asmbl_7393 // Exon Skipping and Retention # skipped_exon 1785-2828 (orient:+) max_ev_support = 1 # retained_exon 2143-2244 (orient:+) max_ev_support = 2 scaffold_114 + retained_exons 2143-2244 asmbl_7405 scaffold_114 + intron_skips_exon 1785-2828 asmbl_7406 // Exon Skipping and Retention # skipped_exon 12177-13245 (orient:+) max_ev_support = 1 # retained_exon 12561-12662 (orient:+) max_ev_support = 1 scaffold_114 + retained_exons 12561-12662 asmbl_7407 scaffold_114 + intron_skips_exon 12177-13245 asmbl_7408 // Exon Skipping and Retention # skipped_exon 1346-2564 (orient:+) max_ev_support = 2 # retained_exon 2277-2370 (orient:+) max_ev_support = 1 scaffold_1150 + retained_exons 2277-2370 asmbl_7414 scaffold_1150 + intron_skips_exon 1346-2564 asmbl_7413 // Exon Skipping and Retention # skipped_exon 1056128-1056993 (orient:+) max_ev_support = 1 # retained_exon 1056754-1056810 (orient:+) max_ev_support = 2 scaffold_12 + retained_exons 1056754-1056810 asmbl_7454,asmbl_7455 scaffold_12 + intron_skips_exon 1056128-1056993 asmbl_7456 // Exon Skipping and Retention # skipped_exon 1056407-1057445 (orient:+) max_ev_support = 1 # retained_exon 1056754-1057091 (orient:+) max_ev_support = 2 scaffold_12 + retained_exons 1056754-1056810,1056994-1057091 asmbl_7454,asmbl_7455 scaffold_12 + intron_skips_exon 1056407-1057445 asmbl_7457 // Retained and Spliced Intron # retained_intron 1059560-1059598 (orient:+) max_ev_support = 2 # spliced_intron 1059560-1059598 (orient:+) max_ev_support = 2 scaffold_12 + intron 1059560-1059598 asmbl_7455 scaffold_12 + retained_intron 1059560-1059598 asmbl_7454,asmbl_7456,asmbl_7457 // Exon Skipping and Retention # skipped_exon 1055100-1056753 (orient:+) max_ev_support = 2 # retained_exon 1056071-1056127 (orient:+) max_ev_support = 1 scaffold_12 + retained_exons 1056071-1056127 asmbl_7456 scaffold_12 + intron_skips_exon 1055100-1056753 asmbl_7454,asmbl_7455 // Exon Skipping and Retention # skipped_exon 1055100-1056753 (orient:+) max_ev_support = 2 # retained_exon 1056071-1056406 (orient:+) max_ev_support = 1 scaffold_12 + retained_exons 1056071-1056127,1056309-1056406 asmbl_7457 scaffold_12 + intron_skips_exon 1055100-1056753 asmbl_7454,asmbl_7455 // Exon Skipping and Retention # skipped_exon 1339354-1341285 (orient:+) max_ev_support = 2 # retained_exon 1340044-1340157 (orient:+) max_ev_support = 1 scaffold_12 + retained_exons 1340044-1340157 asmbl_7469,asmbl_7470 scaffold_12 + intron_skips_exon 1339354-1341285 asmbl_7468 // Retained and Spliced Intron # retained_intron 1383649-1383801 (orient:+) max_ev_support = 1 # spliced_intron 1383649-1383801 (orient:+) max_ev_support = 2 scaffold_12 + intron 1383649-1383801 asmbl_7471 scaffold_12 + retained_intron 1383649-1383801 asmbl_7472 // Exon Skipping and Retention # skipped_exon 2576972-2578181 (orient:+) max_ev_support = 3 # retained_exon 2577724-2577884 (orient:+) max_ev_support = 3 scaffold_12 + retained_exons 2577724-2577884 asmbl_7499 scaffold_12 + intron_skips_exon 2576972-2578181 asmbl_7500 // Retained and Spliced Intron # retained_intron 2662471-2662567 (orient:+) max_ev_support = 2 # spliced_intron 2662471-2662567 (orient:+) max_ev_support = 2 scaffold_12 + intron 2662471-2662567 asmbl_7504 scaffold_12 + retained_intron 2662471-2662567 asmbl_7505 // Exon Skipping and Retention # skipped_exon 2669286-2670699 (orient:+) max_ev_support = 1 # retained_exon 2669663-2669772 (orient:+) max_ev_support = 1 scaffold_12 + retained_exons 2669663-2669772 asmbl_7514 scaffold_12 + intron_skips_exon 2669286-2670699 asmbl_7512 // Retained and Spliced Intron # retained_intron 2721443-2721926 (orient:+) max_ev_support = 2 # spliced_intron 2721443-2721926 (orient:+) max_ev_support = 1 scaffold_12 + intron 2721443-2721926 asmbl_7519 scaffold_12 + retained_intron 2721443-2721926 asmbl_7518 // Exon Skipping and Retention # skipped_exon 2721443-2722927 (orient:+) max_ev_support = 2 # retained_exon 2721927-2721995 (orient:+) max_ev_support = 2 scaffold_12 + retained_exons 2721927-2721995 asmbl_7519 scaffold_12 + intron_skips_exon 2721443-2722927 asmbl_7517 // Exon Skipping and Retention # skipped_exon 3327296-3329359 (orient:+) max_ev_support = 1 # retained_exon 3329169-3329232 (orient:+) max_ev_support = 4 scaffold_12 + retained_exons 3329169-3329232 asmbl_7546,asmbl_7547,asmbl_7549,asmbl_7551 scaffold_12 + intron_skips_exon 3327296-3329359 asmbl_7550 // Exon Skipping and Retention # skipped_exon 3329233-3331370 (orient:+) max_ev_support = 1 # retained_exon 3329360-3330742 (orient:+) max_ev_support = 4 scaffold_12 + retained_exons 3329360-3329391,3329612-3329689,3329825-3329930,3330212-3330305,3330692-3330742 asmbl_7546,asmbl_7549,asmbl_7550 scaffold_12 + intron_skips_exon 3329233-3331370 asmbl_7551 // Exon Skipping and Retention # skipped_exon 3330306-3331370 (orient:+) max_ev_support = 3 # retained_exon 3330692-3330742 (orient:+) max_ev_support = 4 scaffold_12 + retained_exons 3330692-3330742 asmbl_7546,asmbl_7549,asmbl_7550 scaffold_12 + intron_skips_exon 3330306-3331370 asmbl_7547 // Retained and Spliced Intron # retained_intron 3331444-3331469 (orient:+) max_ev_support = 4 # spliced_intron 3331444-3331469 (orient:+) max_ev_support = 1 scaffold_12 + intron 3331444-3331469 asmbl_7549 scaffold_12 + retained_intron 3331444-3331469 asmbl_7546,asmbl_7547,asmbl_7548,asmbl_7550,asmbl_7551 // Retained and Spliced Intron # retained_intron 3330743-3331370 (orient:+) max_ev_support = 2 # spliced_intron 3330743-3331370 (orient:+) max_ev_support = 4 scaffold_12 + intron 3330743-3331370 asmbl_7546,asmbl_7549,asmbl_7550 scaffold_12 + retained_intron 3330743-3331370 asmbl_7548 // Retained and Spliced Intron # retained_intron 3352547-3352645 (orient:+) max_ev_support = 1 # spliced_intron 3352547-3352645 (orient:+) max_ev_support = 1 scaffold_12 + intron 3352547-3352645 asmbl_7554 scaffold_12 + retained_intron 3352547-3352645 asmbl_7553 // Retained and Spliced Intron # retained_intron 3400110-3400288 (orient:+) max_ev_support = 1 # spliced_intron 3400110-3400288 (orient:+) max_ev_support = 1 scaffold_12 + intron 3400110-3400288 asmbl_7560 scaffold_12 + retained_intron 3400110-3400288 asmbl_7561 // Retained and Spliced Intron # retained_intron 4204687-4204911 (orient:+) max_ev_support = 3 # spliced_intron 4204687-4204911 (orient:+) max_ev_support = 3 scaffold_12 + intron 4204687-4204911 asmbl_7587 scaffold_12 + retained_intron 4204687-4204911 asmbl_7586 // Retained and Spliced Intron # retained_intron 4204687-4205332 (orient:+) max_ev_support = 3 # spliced_intron 4204687-4205332 (orient:+) max_ev_support = 1 scaffold_12 + intron 4204687-4205332 asmbl_7588 scaffold_12 + retained_intron 4204687-4205332 asmbl_7586 // Retained and Spliced Intron # retained_intron 4984361-4984577 (orient:+) max_ev_support = 1 # spliced_intron 4984361-4984577 (orient:+) max_ev_support = 2 scaffold_12 + intron 4984361-4984577 asmbl_7624,asmbl_7628,asmbl_7632,asmbl_7633 scaffold_12 + retained_intron 4984361-4984577 asmbl_7630 // Retained and Spliced Intron # retained_intron 5501660-5501870 (orient:+) max_ev_support = 3 # spliced_intron 5501660-5501870 (orient:+) max_ev_support = 1 scaffold_12 + intron 5501660-5501870 asmbl_7658 scaffold_12 + retained_intron 5501660-5501870 asmbl_7657 // Exon Skipping and Retention # skipped_exon 6417045-6417345 (orient:+) max_ev_support = 1 # retained_exon 6417131-6417247 (orient:+) max_ev_support = 2 scaffold_12 + retained_exons 6417131-6417247 asmbl_7680,asmbl_7682,asmbl_7684 scaffold_12 + intron_skips_exon 6417045-6417345 asmbl_7681,asmbl_7683 // Retained and Spliced Intron # retained_intron 6429911-6430170 (orient:+) max_ev_support = 1 # spliced_intron 6429911-6430170 (orient:+) max_ev_support = 2 scaffold_12 + intron 6429911-6430170 asmbl_7686 scaffold_12 + retained_intron 6429911-6430170 asmbl_7687 // Retained and Spliced Intron # retained_intron 6544970-6545003 (orient:+) max_ev_support = 3 # spliced_intron 6544970-6545003 (orient:+) max_ev_support = 1 scaffold_12 + intron 6544970-6545003 asmbl_7699 scaffold_12 + retained_intron 6544970-6545003 asmbl_7698,asmbl_7700 // Retained and Spliced Intron # retained_intron 6542586-6543063 (orient:+) max_ev_support = 2 # spliced_intron 6542586-6543063 (orient:+) max_ev_support = 3 scaffold_12 + intron 6542586-6543063 asmbl_7698,asmbl_7699 scaffold_12 + retained_intron 6542586-6543063 asmbl_7700 // Retained and Spliced Intron # retained_intron 7113789-7113837 (orient:+) max_ev_support = 2 # spliced_intron 7113789-7113837 (orient:+) max_ev_support = 1 scaffold_12 + intron 7113789-7113837 asmbl_7714 scaffold_12 + retained_intron 7113789-7113837 asmbl_7713,asmbl_7715 // Exon Skipping and Retention # skipped_exon 7171746-7173215 (orient:+) max_ev_support = 1 # retained_exon 7171955-7172892 (orient:+) max_ev_support = 2 scaffold_12 + retained_exons 7171955-7172036,7172229-7172398,7172721-7172892 asmbl_7721,asmbl_7723 scaffold_12 + intron_skips_exon 7171746-7173215 asmbl_7724 // Retained and Spliced Intron # retained_intron 7172399-7172720 (orient:+) max_ev_support = 1 # spliced_intron 7172399-7172720 (orient:+) max_ev_support = 2 scaffold_12 + intron 7172399-7172720 asmbl_7721,asmbl_7723 scaffold_12 + retained_intron 7172399-7172720 asmbl_7722 // Retained and Spliced Intron # retained_intron 7172893-7173215 (orient:+) max_ev_support = 1 # spliced_intron 7172893-7173215 (orient:+) max_ev_support = 2 scaffold_12 + intron 7172893-7173215 asmbl_7721,asmbl_7723 scaffold_12 + retained_intron 7172893-7173215 asmbl_7722 // Exon Skipping and Retention # skipped_exon 7222058-7223211 (orient:+) max_ev_support = 2 # retained_exon 7222272-7222306 (orient:+) max_ev_support = 2 scaffold_12 + retained_exons 7222272-7222306 asmbl_7726 scaffold_12 + intron_skips_exon 7222058-7223211 asmbl_7727 // Retained and Spliced Intron # retained_intron 7534953-7535423 (orient:+) max_ev_support = 2 # spliced_intron 7534953-7535423 (orient:+) max_ev_support = 3 scaffold_12 + intron 7534953-7535423 asmbl_7766 scaffold_12 + retained_intron 7534953-7535423 asmbl_7767 // Retained and Spliced Intron # retained_intron 7643813-7644059 (orient:+) max_ev_support = 2 # spliced_intron 7643813-7644059 (orient:+) max_ev_support = 3 scaffold_12 + intron 7643813-7644059 asmbl_7774 scaffold_12 + retained_intron 7643813-7644059 asmbl_7775 // Retained and Spliced Intron # retained_intron 7670363-7670489 (orient:+) max_ev_support = 2 # spliced_intron 7670363-7670489 (orient:+) max_ev_support = 3 scaffold_12 + intron 7670363-7670489 asmbl_7785,asmbl_7787 scaffold_12 + retained_intron 7670363-7670489 asmbl_7786,asmbl_7788 // Retained and Spliced Intron # retained_intron 7669932-7670077 (orient:+) max_ev_support = 2 # spliced_intron 7669932-7670077 (orient:+) max_ev_support = 3 scaffold_12 + intron 7669932-7670077 asmbl_7785,asmbl_7786 scaffold_12 + retained_intron 7669932-7670077 asmbl_7787,asmbl_7788 // Exon Skipping and Retention # skipped_exon 7958547-7958938 (orient:+) max_ev_support = 2 # retained_exon 7958741-7958822 (orient:+) max_ev_support = 2 scaffold_12 + retained_exons 7958741-7958822 asmbl_7797,asmbl_7800 scaffold_12 + intron_skips_exon 7958547-7958938 asmbl_7798,asmbl_7801 // Exon Skipping and Retention # skipped_exon 7962352-7963104 (orient:+) max_ev_support = 1 # retained_exon 7962714-7962843 (orient:+) max_ev_support = 2 scaffold_12 + retained_exons 7962714-7962843 asmbl_7797,asmbl_7798 scaffold_12 + intron_skips_exon 7962352-7963104 asmbl_7800,asmbl_7801 // Retained and Spliced Intron # retained_intron 7974105-7974222 (orient:+) max_ev_support = 1 # spliced_intron 7974105-7974222 (orient:+) max_ev_support = 3 scaffold_12 + intron 7974105-7974222 asmbl_7804,asmbl_7806 scaffold_12 + retained_intron 7974105-7974222 asmbl_7807 // Exon Skipping and Retention # skipped_exon 8824736-8825679 (orient:+) max_ev_support = 2 # retained_exon 8825193-8825578 (orient:+) max_ev_support = 3 scaffold_12 + retained_exons 8825193-8825295,8825454-8825578 asmbl_7827,asmbl_7830,asmbl_7831 scaffold_12 + intron_skips_exon 8824736-8825679 asmbl_7828 // Exon Skipping and Retention # skipped_exon 8915537-8916290 (orient:+) max_ev_support = 1 # retained_exon 8915968-8916065 (orient:+) max_ev_support = 2 scaffold_12 + retained_exons 8915968-8916065 asmbl_7837 scaffold_12 + intron_skips_exon 8915537-8916290 asmbl_7839 // Retained and Spliced Intron # retained_intron 9071332-9071490 (orient:+) max_ev_support = 2 # spliced_intron 9071332-9071490 (orient:+) max_ev_support = 3 scaffold_12 + intron 9071332-9071490 asmbl_7851 scaffold_12 + retained_intron 9071332-9071490 asmbl_7852 // Retained and Spliced Intron # retained_intron 9152051-9152228 (orient:+) max_ev_support = 1 # spliced_intron 9152051-9152228 (orient:+) max_ev_support = 3 scaffold_12 + intron 9152051-9152228 asmbl_7855 scaffold_12 + retained_intron 9152051-9152228 asmbl_7859 // Retained and Spliced Intron # retained_intron 9505734-9505871 (orient:+) max_ev_support = 3 # spliced_intron 9505734-9505871 (orient:+) max_ev_support = 3 scaffold_12 + intron 9505734-9505871 asmbl_7863 scaffold_12 + retained_intron 9505734-9505871 asmbl_7862,asmbl_7864 // Retained and Spliced Intron # retained_intron 9506497-9506614 (orient:+) max_ev_support = 1 # spliced_intron 9506497-9506614 (orient:+) max_ev_support = 2 scaffold_12 + intron 9506497-9506614 asmbl_7865 scaffold_12 + retained_intron 9506497-9506614 asmbl_7866 // Exon Skipping and Retention # skipped_exon 9667623-9668731 (orient:+) max_ev_support = 1 # retained_exon 9667999-9668104 (orient:+) max_ev_support = 3 scaffold_12 + retained_exons 9667999-9668104 asmbl_7867,asmbl_7869 scaffold_12 + intron_skips_exon 9667623-9668731 asmbl_7871 // Exon Skipping and Retention # skipped_exon 9668105-9671050 (orient:+) max_ev_support = 2 # retained_exon 9669326-9669967 (orient:+) max_ev_support = 3 scaffold_12 + retained_exons 9669326-9669437,9669874-9669967 asmbl_7867 scaffold_12 + intron_skips_exon 9668105-9671050 asmbl_7869 // Exon Skipping and Retention # skipped_exon 9668105-9669325 (orient:+) max_ev_support = 3 # retained_exon 9668732-9668837 (orient:+) max_ev_support = 1 scaffold_12 + retained_exons 9668732-9668837 asmbl_7871 scaffold_12 + intron_skips_exon 9668105-9669325 asmbl_7867 // Exon Skipping and Retention # skipped_exon 9797605-9799301 (orient:+) max_ev_support = 1 # retained_exon 9798633-9798739 (orient:+) max_ev_support = 2 scaffold_12 + retained_exons 9798633-9798739 asmbl_7878 scaffold_12 + intron_skips_exon 9797605-9799301 asmbl_7879 // Exon Skipping and Retention # skipped_exon 9827222-9828926 (orient:+) max_ev_support = 3 # retained_exon 9827830-9827884 (orient:+) max_ev_support = 3 scaffold_12 + retained_exons 9827830-9827884 asmbl_7882 scaffold_12 + intron_skips_exon 9827222-9828926 asmbl_7881 // Retained and Spliced Intron # retained_intron 9861352-9861459 (orient:+) max_ev_support = 1 # spliced_intron 9861352-9861459 (orient:+) max_ev_support = 2 scaffold_12 + intron 9861352-9861459 asmbl_7886 scaffold_12 + retained_intron 9861352-9861459 asmbl_7887 // Retained and Spliced Intron # retained_intron 10190123-10190194 (orient:+) max_ev_support = 1 # spliced_intron 10190123-10190194 (orient:+) max_ev_support = 1 scaffold_12 + intron 10190123-10190194 asmbl_7910 scaffold_12 + retained_intron 10190123-10190194 asmbl_7911 // Retained and Spliced Intron # retained_intron 10384453-10384526 (orient:+) max_ev_support = 1 # spliced_intron 10384453-10384526 (orient:+) max_ev_support = 2 scaffold_12 + intron 10384453-10384526 asmbl_7921 scaffold_12 + retained_intron 10384453-10384526 asmbl_7922 // Exon Skipping and Retention # skipped_exon 10532534-10534377 (orient:+) max_ev_support = 1 # retained_exon 10533666-10533775 (orient:+) max_ev_support = 3 scaffold_12 + retained_exons 10533666-10533775 asmbl_7925 scaffold_12 + intron_skips_exon 10532534-10534377 asmbl_7928 // Exon Skipping and Retention # skipped_exon 10604821-10607034 (orient:+) max_ev_support = 2 # retained_exon 10605626-10605683 (orient:+) max_ev_support = 2 scaffold_12 + retained_exons 10605626-10605683 asmbl_7945 scaffold_12 + intron_skips_exon 10604821-10607034 asmbl_7944 // Exon Skipping and Retention # skipped_exon 10604821-10606018 (orient:+) max_ev_support = 2 # retained_exon 10605626-10605683 (orient:+) max_ev_support = 2 scaffold_12 + retained_exons 10605626-10605683 asmbl_7945 scaffold_12 + intron_skips_exon 10604821-10606018 asmbl_7946 // Exon Skipping and Retention # skipped_exon 10605684-10607034 (orient:+) max_ev_support = 2 # retained_exon 10606019-10606058 (orient:+) max_ev_support = 2 scaffold_12 + retained_exons 10606019-10606058 asmbl_7946 scaffold_12 + intron_skips_exon 10605684-10607034 asmbl_7945,asmbl_7947 // Exon Skipping and Retention # skipped_exon 10604821-10606018 (orient:+) max_ev_support = 2 # retained_exon 10605600-10605683 (orient:+) max_ev_support = 1 scaffold_12 + retained_exons 10605600-10605683 asmbl_7947 scaffold_12 + intron_skips_exon 10604821-10606018 asmbl_7946 // Retained and Spliced Intron # retained_intron 11324172-11324264 (orient:+) max_ev_support = 3 # spliced_intron 11324172-11324264 (orient:+) max_ev_support = 3 scaffold_12 + intron 11324172-11324264 asmbl_7959 scaffold_12 + retained_intron 11324172-11324264 asmbl_7960 // Retained and Spliced Intron # retained_intron 12018186-12018385 (orient:+) max_ev_support = 1 # spliced_intron 12018186-12018385 (orient:+) max_ev_support = 3 scaffold_12 + intron 12018186-12018385 asmbl_7969,asmbl_7970,asmbl_7971 scaffold_12 + retained_intron 12018186-12018385 asmbl_7972 // Retained and Spliced Intron # retained_intron 12307824-12308727 (orient:+) max_ev_support = 3 # spliced_intron 12307824-12308727 (orient:+) max_ev_support = 2 scaffold_12 + intron 12307824-12308727 asmbl_7984,asmbl_7986,asmbl_7987 scaffold_12 + retained_intron 12307824-12308727 asmbl_7983 // Retained and Spliced Intron # retained_intron 12307824-12309134 (orient:+) max_ev_support = 3 # spliced_intron 12307824-12309134 (orient:+) max_ev_support = 2 scaffold_12 + intron 12307824-12309134 asmbl_7985 scaffold_12 + retained_intron 12307824-12309134 asmbl_7983 // Retained and Spliced Intron # retained_intron 12308782-12309134 (orient:+) max_ev_support = 3 # spliced_intron 12308782-12309134 (orient:+) max_ev_support = 2 scaffold_12 + intron 12308782-12309134 asmbl_7984,asmbl_7986,asmbl_7987 scaffold_12 + retained_intron 12308782-12309134 asmbl_7983 // Exon Skipping and Retention # skipped_exon 12307824-12309134 (orient:+) max_ev_support = 2 # retained_exon 12308728-12308781 (orient:+) max_ev_support = 2 scaffold_12 + retained_exons 12308728-12308781 asmbl_7984,asmbl_7986,asmbl_7987 scaffold_12 + intron_skips_exon 12307824-12309134 asmbl_7985 // Retained and Spliced Intron # retained_intron 12349498-12349762 (orient:+) max_ev_support = 2 # spliced_intron 12349498-12349762 (orient:+) max_ev_support = 3 scaffold_12 + intron 12349498-12349762 asmbl_7991,asmbl_7994 scaffold_12 + retained_intron 12349498-12349762 asmbl_7992 // Retained and Spliced Intron # retained_intron 12349852-12350033 (orient:+) max_ev_support = 2 # spliced_intron 12349852-12350033 (orient:+) max_ev_support = 3 scaffold_12 + intron 12349852-12350033 asmbl_7991,asmbl_7994 scaffold_12 + retained_intron 12349852-12350033 asmbl_7992 // Retained and Spliced Intron # retained_intron 12451819-12451938 (orient:+) max_ev_support = 1 # spliced_intron 12451819-12451938 (orient:+) max_ev_support = 1 scaffold_12 + intron 12451819-12451938 asmbl_8007 scaffold_12 + retained_intron 12451819-12451938 asmbl_8006 // Exon Skipping and Retention # skipped_exon 12451859-12451997 (orient:+) max_ev_support = 1 # retained_exon 12451939-12451978 (orient:+) max_ev_support = 1 scaffold_12 + retained_exons 12451939-12451978 asmbl_8007 scaffold_12 + intron_skips_exon 12451859-12451997 asmbl_8004 // Retained and Spliced Intron # retained_intron 12802383-12802469 (orient:+) max_ev_support = 3 # spliced_intron 12802383-12802469 (orient:+) max_ev_support = 2 scaffold_12 + intron 12802383-12802469 asmbl_8022,asmbl_8023,asmbl_8024 scaffold_12 + retained_intron 12802383-12802469 asmbl_8020 // Exon Skipping and Retention # skipped_exon 14041166-14041584 (orient:+) max_ev_support = 2 # retained_exon 14041360-14041409 (orient:+) max_ev_support = 3 scaffold_12 + retained_exons 14041360-14041409 asmbl_8043 scaffold_12 + intron_skips_exon 14041166-14041584 asmbl_8044 // Exon Skipping and Retention # skipped_exon 14041156-14041584 (orient:+) max_ev_support = 1 # retained_exon 14041360-14041409 (orient:+) max_ev_support = 3 scaffold_12 + retained_exons 14041360-14041409 asmbl_8043 scaffold_12 + intron_skips_exon 14041156-14041584 asmbl_8045 // Retained and Spliced Intron # retained_intron 14173452-14173745 (orient:+) max_ev_support = 2 # spliced_intron 14173452-14173745 (orient:+) max_ev_support = 1 scaffold_12 + intron 14173452-14173745 asmbl_8067 scaffold_12 + retained_intron 14173452-14173745 asmbl_8064,asmbl_8065,asmbl_8066 // Retained and Spliced Intron # retained_intron 14173452-14174310 (orient:+) max_ev_support = 3 # spliced_intron 14173452-14174310 (orient:+) max_ev_support = 1 scaffold_12 + intron 14173452-14174310 asmbl_8068 scaffold_12 + retained_intron 14173452-14174310 asmbl_8064,asmbl_8065,asmbl_8066 // Retained and Spliced Intron # retained_intron 14171917-14172236 (orient:+) max_ev_support = 2 # spliced_intron 14171917-14172236 (orient:+) max_ev_support = 2 scaffold_12 + intron 14171917-14172236 asmbl_8064 scaffold_12 + retained_intron 14171917-14172236 asmbl_8066 // Exon Skipping and Retention # skipped_exon 14224107-14226458 (orient:+) max_ev_support = 1 # retained_exon 14225620-14225625 (orient:+) max_ev_support = 1 scaffold_12 + retained_exons 14225620-14225625 asmbl_8071 scaffold_12 + intron_skips_exon 14224107-14226458 asmbl_8072 // Retained and Spliced Intron # retained_intron 14256759-14257074 (orient:+) max_ev_support = 2 # spliced_intron 14256759-14257074 (orient:+) max_ev_support = 1 scaffold_12 + intron 14256759-14257074 asmbl_8077 scaffold_12 + retained_intron 14256759-14257074 asmbl_8076 // Exon Skipping and Retention # skipped_exon 14882369-14882672 (orient:+) max_ev_support = 1 # retained_exon 14882485-14882584 (orient:+) max_ev_support = 2 scaffold_12 + retained_exons 14882485-14882584 asmbl_8092,asmbl_8093 scaffold_12 + intron_skips_exon 14882369-14882672 asmbl_8094 // Retained and Spliced Intron # retained_intron 14908049-14908188 (orient:+) max_ev_support = 1 # spliced_intron 14908049-14908188 (orient:+) max_ev_support = 1 scaffold_12 + intron 14908049-14908188 asmbl_8097 scaffold_12 + retained_intron 14908049-14908188 asmbl_8098 // Retained and Spliced Intron # retained_intron 15048311-15048677 (orient:+) max_ev_support = 1 # spliced_intron 15048311-15048677 (orient:+) max_ev_support = 3 scaffold_12 + intron 15048311-15048677 asmbl_8106 scaffold_12 + retained_intron 15048311-15048677 asmbl_8107 // Retained and Spliced Intron # retained_intron 15204227-15204314 (orient:+) max_ev_support = 2 # spliced_intron 15204227-15204314 (orient:+) max_ev_support = 2 scaffold_12 + intron 15204227-15204314 asmbl_8111 scaffold_12 + retained_intron 15204227-15204314 asmbl_8112 // Exon Skipping and Retention # skipped_exon 15212283-15213043 (orient:+) max_ev_support = 3 # retained_exon 15212685-15212743 (orient:+) max_ev_support = 3 scaffold_12 + retained_exons 15212685-15212743 asmbl_8114,asmbl_8115 scaffold_12 + intron_skips_exon 15212283-15213043 asmbl_8113 // Retained and Spliced Intron # retained_intron 15213364-15213677 (orient:+) max_ev_support = 3 # spliced_intron 15213364-15213677 (orient:+) max_ev_support = 3 scaffold_12 + intron 15213364-15213677 asmbl_8113,asmbl_8115,asmbl_8116 scaffold_12 + retained_intron 15213364-15213677 asmbl_8114 // Retained and Spliced Intron # retained_intron 15694711-15694787 (orient:+) max_ev_support = 1 # spliced_intron 15694711-15694787 (orient:+) max_ev_support = 2 scaffold_12 + intron 15694711-15694787 asmbl_8134 scaffold_12 + retained_intron 15694711-15694787 asmbl_8135 // Retained and Spliced Intron # retained_intron 16247233-16247319 (orient:+) max_ev_support = 2 # spliced_intron 16247233-16247319 (orient:+) max_ev_support = 2 scaffold_12 + intron 16247233-16247319 asmbl_8155,asmbl_8158 scaffold_12 + retained_intron 16247233-16247319 asmbl_8156,asmbl_8157 // Retained and Spliced Intron # retained_intron 16247233-16247328 (orient:+) max_ev_support = 2 # spliced_intron 16247233-16247328 (orient:+) max_ev_support = 3 scaffold_12 + intron 16247233-16247328 asmbl_8154 scaffold_12 + retained_intron 16247233-16247328 asmbl_8156,asmbl_8157 // Retained and Spliced Intron # retained_intron 16338941-16339103 (orient:+) max_ev_support = 1 # spliced_intron 16338941-16339103 (orient:+) max_ev_support = 2 scaffold_12 + intron 16338941-16339103 asmbl_8162 scaffold_12 + retained_intron 16338941-16339103 asmbl_8163 // Retained and Spliced Intron # retained_intron 16338959-16339103 (orient:+) max_ev_support = 1 # spliced_intron 16338959-16339103 (orient:+) max_ev_support = 2 scaffold_12 + intron 16338959-16339103 asmbl_8161 scaffold_12 + retained_intron 16338959-16339103 asmbl_8163 // Retained and Spliced Intron # retained_intron 16399852-16401627 (orient:+) max_ev_support = 5 # spliced_intron 16399852-16401627 (orient:+) max_ev_support = 3 scaffold_12 + intron 16399852-16401627 asmbl_8171 scaffold_12 + retained_intron 16399852-16401627 asmbl_8168,asmbl_8169,asmbl_8170,asmbl_8172 // Retained and Spliced Intron # retained_intron 16399852-16401681 (orient:+) max_ev_support = 5 # spliced_intron 16399852-16401681 (orient:+) max_ev_support = 2 scaffold_12 + intron 16399852-16401681 asmbl_8173,asmbl_8174 scaffold_12 + retained_intron 16399852-16401681 asmbl_8168,asmbl_8169,asmbl_8170,asmbl_8172 // Retained and Spliced Intron # retained_intron 16402135-16403321 (orient:+) max_ev_support = 5 # spliced_intron 16402135-16403321 (orient:+) max_ev_support = 2 scaffold_12 + intron 16402135-16403321 asmbl_8172,asmbl_8174 scaffold_12 + retained_intron 16402135-16403321 asmbl_8168,asmbl_8169,asmbl_8170,asmbl_8171 // Retained and Spliced Intron # retained_intron 16403693-16403810 (orient:+) max_ev_support = 3 # spliced_intron 16403693-16403810 (orient:+) max_ev_support = 2 scaffold_12 + intron 16403693-16403810 asmbl_8170,asmbl_8172,asmbl_8174 scaffold_12 + retained_intron 16403693-16403810 asmbl_8168 // Retained and Spliced Intron # retained_intron 16403693-16404417 (orient:+) max_ev_support = 3 # spliced_intron 16403693-16404417 (orient:+) max_ev_support = 3 scaffold_12 + intron 16403693-16404417 asmbl_8169,asmbl_8171 scaffold_12 + retained_intron 16403693-16404417 asmbl_8168 // Exon Skipping and Retention # skipped_exon 26480-28451 (orient:-) max_ev_support = 2 # retained_exon 26756-26881 (orient:-) max_ev_support = 2 scaffold_12 - retained_exons 26756-26881 asmbl_8262,asmbl_8263 scaffold_12 - intron_skips_exon 26480-28451 asmbl_8261 // Retained and Spliced Intron # retained_intron 101136-101235 (orient:-) max_ev_support = 1 # spliced_intron 101136-101235 (orient:-) max_ev_support = 2 scaffold_12 - intron 101136-101235 asmbl_8271 scaffold_12 - retained_intron 101136-101235 asmbl_8272 // Retained and Spliced Intron # retained_intron 110425-111191 (orient:-) max_ev_support = 3 # spliced_intron 110425-111191 (orient:-) max_ev_support = 2 scaffold_12 - intron 110425-111191 asmbl_8274 scaffold_12 - retained_intron 110425-111191 asmbl_8273 // Retained and Spliced Intron # retained_intron 1066676-1067984 (orient:-) max_ev_support = 2 # spliced_intron 1066676-1067984 (orient:-) max_ev_support = 2 scaffold_12 - intron 1066676-1067984 asmbl_8288 scaffold_12 - retained_intron 1066676-1067984 asmbl_8289,asmbl_8290,asmbl_8291 // Retained and Spliced Intron # retained_intron 1065757-1065908 (orient:-) max_ev_support = 1 # spliced_intron 1065757-1065908 (orient:-) max_ev_support = 2 scaffold_12 - intron 1065757-1065908 asmbl_8288,asmbl_8290 scaffold_12 - retained_intron 1065757-1065908 asmbl_8291 // Retained and Spliced Intron # retained_intron 1973797-1973924 (orient:-) max_ev_support = 2 # spliced_intron 1973797-1973924 (orient:-) max_ev_support = 1 scaffold_12 - intron 1973797-1973924 asmbl_8311 scaffold_12 - retained_intron 1973797-1973924 asmbl_8310 // Exon Skipping and Retention # skipped_exon 2926206-2928443 (orient:-) max_ev_support = 1 # retained_exon 2926610-2926726 (orient:-) max_ev_support = 1 scaffold_12 - retained_exons 2926610-2926726 asmbl_8332 scaffold_12 - intron_skips_exon 2926206-2928443 asmbl_8333 // Exon Skipping and Retention # skipped_exon 2926727-2928950 (orient:-) max_ev_support = 1 # retained_exon 2928444-2928560 (orient:-) max_ev_support = 1 scaffold_12 - retained_exons 2928444-2928560 asmbl_8333 scaffold_12 - intron_skips_exon 2926727-2928950 asmbl_8332 // Retained and Spliced Intron # retained_intron 2965837-2965925 (orient:-) max_ev_support = 2 # spliced_intron 2965837-2965925 (orient:-) max_ev_support = 2 scaffold_12 - intron 2965837-2965925 asmbl_8337 scaffold_12 - retained_intron 2965837-2965925 asmbl_8338 // Retained and Spliced Intron # retained_intron 2987278-2987365 (orient:-) max_ev_support = 2 # spliced_intron 2987278-2987365 (orient:-) max_ev_support = 1 scaffold_12 - intron 2987278-2987365 asmbl_8341 scaffold_12 - retained_intron 2987278-2987365 asmbl_8340 // Retained and Spliced Intron # retained_intron 2984860-2985625 (orient:-) max_ev_support = 2 # spliced_intron 2984860-2985625 (orient:-) max_ev_support = 2 scaffold_12 - intron 2984860-2985625 asmbl_8340,asmbl_8341 scaffold_12 - retained_intron 2984860-2985625 asmbl_8342 // Exon Skipping and Retention # skipped_exon 3008296-3009494 (orient:-) max_ev_support = 1 # retained_exon 3008647-3008798 (orient:-) max_ev_support = 2 scaffold_12 - retained_exons 3008647-3008798 asmbl_8345 scaffold_12 - intron_skips_exon 3008296-3009494 asmbl_8346 // Exon Skipping and Retention # skipped_exon 3008799-3009809 (orient:-) max_ev_support = 2 # retained_exon 3009495-3009646 (orient:-) max_ev_support = 1 scaffold_12 - retained_exons 3009495-3009646 asmbl_8346 scaffold_12 - intron_skips_exon 3008799-3009809 asmbl_8345 // Exon Skipping and Retention # skipped_exon 3215826-3218027 (orient:-) max_ev_support = 2 # retained_exon 3216288-3216509 (orient:-) max_ev_support = 2 scaffold_12 - retained_exons 3216288-3216509 asmbl_8350 scaffold_12 - intron_skips_exon 3215826-3218027 asmbl_8351 // Retained and Spliced Intron # retained_intron 3326235-3326361 (orient:-) max_ev_support = 2 # spliced_intron 3326235-3326361 (orient:-) max_ev_support = 2 scaffold_12 - intron 3326235-3326361 asmbl_8353 scaffold_12 - retained_intron 3326235-3326361 asmbl_8354 // Retained and Spliced Intron # retained_intron 4290876-4291432 (orient:-) max_ev_support = 1 # spliced_intron 4290876-4291432 (orient:-) max_ev_support = 2 scaffold_12 - intron 4290876-4291432 asmbl_8385 scaffold_12 - retained_intron 4290876-4291432 asmbl_8387 // Retained and Spliced Intron # retained_intron 4549036-4549126 (orient:-) max_ev_support = 1 # spliced_intron 4549036-4549126 (orient:-) max_ev_support = 2 scaffold_12 - intron 4549036-4549126 asmbl_8399 scaffold_12 - retained_intron 4549036-4549126 asmbl_8400 // Exon Skipping and Retention # skipped_exon 4558127-4560176 (orient:-) max_ev_support = 1 # retained_exon 4559127-4559150 (orient:-) max_ev_support = 2 scaffold_12 - retained_exons 4559127-4559150 asmbl_8401 scaffold_12 - intron_skips_exon 4558127-4560176 asmbl_8402 // Exon Skipping and Retention # skipped_exon 4609577-4610289 (orient:-) max_ev_support = 1 # retained_exon 4610037-4610122 (orient:-) max_ev_support = 2 scaffold_12 - retained_exons 4610037-4610122 asmbl_8412,asmbl_8413,asmbl_8415 scaffold_12 - intron_skips_exon 4609577-4610289 asmbl_8416,asmbl_8417 // Retained and Spliced Intron # retained_intron 4617396-4617716 (orient:-) max_ev_support = 2 # spliced_intron 4617396-4617716 (orient:-) max_ev_support = 3 scaffold_12 - intron 4617396-4617716 asmbl_8422,asmbl_8425 scaffold_12 - retained_intron 4617396-4617716 asmbl_8423 // Retained and Spliced Intron # retained_intron 4722673-4722768 (orient:-) max_ev_support = 2 # spliced_intron 4722673-4722768 (orient:-) max_ev_support = 2 scaffold_12 - intron 4722673-4722768 asmbl_8432,asmbl_8434 scaffold_12 - retained_intron 4722673-4722768 asmbl_8431,asmbl_8437 // Retained and Spliced Intron # retained_intron 4720907-4720996 (orient:-) max_ev_support = 2 # spliced_intron 4720907-4720996 (orient:-) max_ev_support = 2 scaffold_12 - intron 4720907-4720996 asmbl_8431,asmbl_8432,asmbl_8434,asmbl_8435,asmbl_8436,asmbl_8437 scaffold_12 - retained_intron 4720907-4720996 asmbl_8433 // Retained and Spliced Intron # retained_intron 4721240-4721269 (orient:-) max_ev_support = 2 # spliced_intron 4721240-4721269 (orient:-) max_ev_support = 1 scaffold_12 - intron 4721240-4721269 asmbl_8435 scaffold_12 - retained_intron 4721240-4721269 asmbl_8433,asmbl_8434,asmbl_8437 // Retained and Spliced Intron # retained_intron 4721064-4721689 (orient:-) max_ev_support = 1 # spliced_intron 4721064-4721689 (orient:-) max_ev_support = 2 scaffold_12 - intron 4721064-4721689 asmbl_8431,asmbl_8432,asmbl_8436 scaffold_12 - retained_intron 4721064-4721689 asmbl_8434,asmbl_8437 // Retained and Spliced Intron # retained_intron 4721793-4722413 (orient:-) max_ev_support = 1 # spliced_intron 4721793-4722413 (orient:-) max_ev_support = 2 scaffold_12 - intron 4721793-4722413 asmbl_8431,asmbl_8432,asmbl_8435,asmbl_8436 scaffold_12 - retained_intron 4721793-4722413 asmbl_8434,asmbl_8437 // Retained and Spliced Intron # retained_intron 4787739-4787935 (orient:-) max_ev_support = 1 # spliced_intron 4787739-4787935 (orient:-) max_ev_support = 2 scaffold_12 - intron 4787739-4787935 asmbl_8447,asmbl_8450,asmbl_8454,asmbl_8457 scaffold_12 - retained_intron 4787739-4787935 asmbl_8446,asmbl_8453 // Retained and Spliced Intron # retained_intron 4788054-4789011 (orient:-) max_ev_support = 3 # spliced_intron 4788054-4789011 (orient:-) max_ev_support = 2 scaffold_12 - intron 4788054-4789011 asmbl_8450,asmbl_8457 scaffold_12 - retained_intron 4788054-4789011 asmbl_8446,asmbl_8447 // Retained and Spliced Intron # retained_intron 4783952-4784097 (orient:-) max_ev_support = 1 # spliced_intron 4783952-4784097 (orient:-) max_ev_support = 2 scaffold_12 - intron 4783952-4784097 asmbl_8448,asmbl_8450,asmbl_8452,asmbl_8453 scaffold_12 - retained_intron 4783952-4784097 asmbl_8447,asmbl_8455,asmbl_8456,asmbl_8457 // Retained and Spliced Intron # retained_intron 4784262-4784513 (orient:-) max_ev_support = 2 # spliced_intron 4784262-4784513 (orient:-) max_ev_support = 2 scaffold_12 - intron 4784262-4784513 asmbl_8448,asmbl_8450,asmbl_8452,asmbl_8453,asmbl_8455,asmbl_8456,asmbl_8457 scaffold_12 - retained_intron 4784262-4784513 asmbl_8447,asmbl_8449 // Retained and Spliced Intron # retained_intron 4784663-4785218 (orient:-) max_ev_support = 2 # spliced_intron 4784663-4785218 (orient:-) max_ev_support = 2 scaffold_12 - intron 4784663-4785218 asmbl_8448,asmbl_8456 scaffold_12 - retained_intron 4784663-4785218 asmbl_8449 // Exon Skipping and Retention # skipped_exon 4952039-4953568 (orient:-) max_ev_support = 1 # retained_exon 4952498-4952570 (orient:-) max_ev_support = 2 scaffold_12 - retained_exons 4952498-4952570 asmbl_8467 scaffold_12 - intron_skips_exon 4952039-4953568 asmbl_8468,asmbl_8469 // Retained and Spliced Intron # retained_intron 5039289-5039416 (orient:-) max_ev_support = 1 # spliced_intron 5039289-5039416 (orient:-) max_ev_support = 2 scaffold_12 - intron 5039289-5039416 asmbl_8473,asmbl_8474 scaffold_12 - retained_intron 5039289-5039416 asmbl_8476 // Retained and Spliced Intron # retained_intron 5140448-5141695 (orient:-) max_ev_support = 4 # spliced_intron 5140448-5141695 (orient:-) max_ev_support = 2 scaffold_12 - intron 5140448-5141695 asmbl_8489 scaffold_12 - retained_intron 5140448-5141695 asmbl_8488 // Retained and Spliced Intron # retained_intron 5452318-5452775 (orient:-) max_ev_support = 1 # spliced_intron 5452318-5452775 (orient:-) max_ev_support = 1 scaffold_12 - intron 5452318-5452775 asmbl_8496 scaffold_12 - retained_intron 5452318-5452775 asmbl_8495 // Retained and Spliced Intron # retained_intron 5636130-5636448 (orient:-) max_ev_support = 2 # spliced_intron 5636130-5636448 (orient:-) max_ev_support = 2 scaffold_12 - intron 5636130-5636448 asmbl_8518 scaffold_12 - retained_intron 5636130-5636448 asmbl_8517 // Retained and Spliced Intron # retained_intron 5636130-5637493 (orient:-) max_ev_support = 2 # spliced_intron 5636130-5637493 (orient:-) max_ev_support = 2 scaffold_12 - intron 5636130-5637493 asmbl_8516 scaffold_12 - retained_intron 5636130-5637493 asmbl_8517 // Retained and Spliced Intron # retained_intron 5635890-5636032 (orient:-) max_ev_support = 2 # spliced_intron 5635890-5636032 (orient:-) max_ev_support = 2 scaffold_12 - intron 5635890-5636032 asmbl_8516,asmbl_8517 scaffold_12 - retained_intron 5635890-5636032 asmbl_8518 // Retained and Spliced Intron # retained_intron 6396998-6397091 (orient:-) max_ev_support = 1 # spliced_intron 6396998-6397091 (orient:-) max_ev_support = 2 scaffold_12 - intron 6396998-6397091 asmbl_8529 scaffold_12 - retained_intron 6396998-6397091 asmbl_8531 // Retained and Spliced Intron # retained_intron 6424684-6424834 (orient:-) max_ev_support = 2 # spliced_intron 6424684-6424834 (orient:-) max_ev_support = 2 scaffold_12 - intron 6424684-6424834 asmbl_8533 scaffold_12 - retained_intron 6424684-6424834 asmbl_8534,asmbl_8535 // Retained and Spliced Intron # retained_intron 6526646-6526749 (orient:-) max_ev_support = 1 # spliced_intron 6526646-6526749 (orient:-) max_ev_support = 2 scaffold_12 - intron 6526646-6526749 asmbl_8540,asmbl_8541 scaffold_12 - retained_intron 6526646-6526749 asmbl_8542 // Retained and Spliced Intron # retained_intron 6943372-6943864 (orient:-) max_ev_support = 3 # spliced_intron 6943372-6943864 (orient:-) max_ev_support = 2 scaffold_12 - intron 6943372-6943864 asmbl_8547 scaffold_12 - retained_intron 6943372-6943864 asmbl_8546,asmbl_8548 // Retained and Spliced Intron # retained_intron 6943917-6944472 (orient:-) max_ev_support = 3 # spliced_intron 6943917-6944472 (orient:-) max_ev_support = 2 scaffold_12 - intron 6943917-6944472 asmbl_8547,asmbl_8548 scaffold_12 - retained_intron 6943917-6944472 asmbl_8546 // Retained and Spliced Intron # retained_intron 6947276-6947768 (orient:-) max_ev_support = 1 # spliced_intron 6947276-6947768 (orient:-) max_ev_support = 2 scaffold_12 - intron 6947276-6947768 asmbl_8549,asmbl_8551 scaffold_12 - retained_intron 6947276-6947768 asmbl_8550,asmbl_8552 // Retained and Spliced Intron # retained_intron 6947821-6948376 (orient:-) max_ev_support = 1 # spliced_intron 6947821-6948376 (orient:-) max_ev_support = 2 scaffold_12 - intron 6947821-6948376 asmbl_8549,asmbl_8552 scaffold_12 - retained_intron 6947821-6948376 asmbl_8550,asmbl_8551 // Retained and Spliced Intron # retained_intron 7275053-7275198 (orient:-) max_ev_support = 2 # spliced_intron 7275053-7275198 (orient:-) max_ev_support = 3 scaffold_12 - intron 7275053-7275198 asmbl_8563,asmbl_8564,asmbl_8566 scaffold_12 - retained_intron 7275053-7275198 asmbl_8565 // Retained and Spliced Intron # retained_intron 7275468-7275640 (orient:-) max_ev_support = 2 # spliced_intron 7275468-7275640 (orient:-) max_ev_support = 3 scaffold_12 - intron 7275468-7275640 asmbl_8563,asmbl_8564,asmbl_8566 scaffold_12 - retained_intron 7275468-7275640 asmbl_8565 // Retained and Spliced Intron # retained_intron 7275750-7275862 (orient:-) max_ev_support = 2 # spliced_intron 7275750-7275862 (orient:-) max_ev_support = 3 scaffold_12 - intron 7275750-7275862 asmbl_8563,asmbl_8564,asmbl_8566 scaffold_12 - retained_intron 7275750-7275862 asmbl_8565 // Retained and Spliced Intron # retained_intron 7392698-7392862 (orient:-) max_ev_support = 1 # spliced_intron 7392698-7392862 (orient:-) max_ev_support = 2 scaffold_12 - intron 7392698-7392862 asmbl_8576 scaffold_12 - retained_intron 7392698-7392862 asmbl_8578 // Retained and Spliced Intron # retained_intron 7422321-7422559 (orient:-) max_ev_support = 3 # spliced_intron 7422321-7422559 (orient:-) max_ev_support = 2 scaffold_12 - intron 7422321-7422559 asmbl_8585 scaffold_12 - retained_intron 7422321-7422559 asmbl_8583,asmbl_8587 // Retained and Spliced Intron # retained_intron 7422321-7422854 (orient:-) max_ev_support = 3 # spliced_intron 7422321-7422854 (orient:-) max_ev_support = 2 scaffold_12 - intron 7422321-7422854 asmbl_8584 scaffold_12 - retained_intron 7422321-7422854 asmbl_8583,asmbl_8587 // Retained and Spliced Intron # retained_intron 7422596-7422854 (orient:-) max_ev_support = 3 # spliced_intron 7422596-7422854 (orient:-) max_ev_support = 2 scaffold_12 - intron 7422596-7422854 asmbl_8585 scaffold_12 - retained_intron 7422596-7422854 asmbl_8583,asmbl_8587 // Exon Skipping and Retention # skipped_exon 7422321-7422854 (orient:-) max_ev_support = 2 # retained_exon 7422560-7422595 (orient:-) max_ev_support = 2 scaffold_12 - retained_exons 7422560-7422595 asmbl_8585 scaffold_12 - intron_skips_exon 7422321-7422854 asmbl_8584 // Retained and Spliced Intron # retained_intron 7499766-7499934 (orient:-) max_ev_support = 2 # spliced_intron 7499766-7499934 (orient:-) max_ev_support = 2 scaffold_12 - intron 7499766-7499934 asmbl_8589 scaffold_12 - retained_intron 7499766-7499934 asmbl_8588 // Exon Skipping and Retention # skipped_exon 7540862-7541225 (orient:-) max_ev_support = 2 # retained_exon 7541007-7541102 (orient:-) max_ev_support = 2 scaffold_12 - retained_exons 7541007-7541102 asmbl_8594,asmbl_8598 scaffold_12 - intron_skips_exon 7540862-7541225 asmbl_8595,asmbl_8597 // Exon Skipping and Retention # skipped_exon 7542468-7542849 (orient:-) max_ev_support = 1 # retained_exon 7542623-7542703 (orient:-) max_ev_support = 2 scaffold_12 - retained_exons 7542623-7542703 asmbl_8594,asmbl_8595 scaffold_12 - intron_skips_exon 7542468-7542849 asmbl_8597,asmbl_8598 // Exon Skipping and Retention # skipped_exon 7591172-7592710 (orient:-) max_ev_support = 2 # retained_exon 7591312-7591701 (orient:-) max_ev_support = 2 scaffold_12 - retained_exons 7591312-7591701 asmbl_8600 scaffold_12 - intron_skips_exon 7591172-7592710 asmbl_8599 // Exon Skipping and Retention # skipped_exon 7617691-7618187 (orient:-) max_ev_support = 1 # retained_exon 7617818-7617898 (orient:-) max_ev_support = 2 scaffold_12 - retained_exons 7617818-7617898 asmbl_8603,asmbl_8604,asmbl_8606,asmbl_8608 scaffold_12 - intron_skips_exon 7617691-7618187 asmbl_8605,asmbl_8607,asmbl_8609 // Exon Skipping and Retention # skipped_exon 7617899-7618496 (orient:-) max_ev_support = 2 # retained_exon 7618188-7618268 (orient:-) max_ev_support = 1 scaffold_12 - retained_exons 7618188-7618268 asmbl_8605,asmbl_8607,asmbl_8609 scaffold_12 - intron_skips_exon 7617899-7618496 asmbl_8603,asmbl_8604,asmbl_8606,asmbl_8608 // Retained and Spliced Intron # retained_intron 7626418-7626858 (orient:-) max_ev_support = 3 # spliced_intron 7626418-7626858 (orient:-) max_ev_support = 1 scaffold_12 - intron 7626418-7626858 asmbl_8611 scaffold_12 - retained_intron 7626418-7626858 asmbl_8610 // Retained and Spliced Intron # retained_intron 7626482-7626549 (orient:-) max_ev_support = 3 # spliced_intron 7626482-7626549 (orient:-) max_ev_support = 1 scaffold_12 - intron 7626482-7626549 asmbl_8612 scaffold_12 - retained_intron 7626482-7626549 asmbl_8610 // Retained and Spliced Intron # retained_intron 7836793-7836902 (orient:-) max_ev_support = 1 # spliced_intron 7836793-7836902 (orient:-) max_ev_support = 2 scaffold_12 - intron 7836793-7836902 asmbl_8616 scaffold_12 - retained_intron 7836793-7836902 asmbl_8617 // Retained and Spliced Intron # retained_intron 9236297-9236367 (orient:-) max_ev_support = 2 # spliced_intron 9236297-9236367 (orient:-) max_ev_support = 1 scaffold_12 - intron 9236297-9236367 asmbl_8666,asmbl_8669 scaffold_12 - retained_intron 9236297-9236367 asmbl_8662,asmbl_8663,asmbl_8671 // Exon Skipping and Retention # skipped_exon 9235345-9236367 (orient:-) max_ev_support = 1 # retained_exon 9236184-9236296 (orient:-) max_ev_support = 1 scaffold_12 - retained_exons 9236184-9236296 asmbl_8666,asmbl_8669 scaffold_12 - intron_skips_exon 9235345-9236367 asmbl_8664,asmbl_8667,asmbl_8670 // Retained and Spliced Intron # retained_intron 9687346-9687437 (orient:-) max_ev_support = 2 # spliced_intron 9687346-9687437 (orient:-) max_ev_support = 2 scaffold_12 - intron 9687346-9687437 asmbl_8691,asmbl_8693 scaffold_12 - retained_intron 9687346-9687437 asmbl_8690 // Exon Skipping and Retention # skipped_exon 9687346-9690020 (orient:-) max_ev_support = 3 # retained_exon 9687438-9687595 (orient:-) max_ev_support = 2 scaffold_12 - retained_exons 9687438-9687595 asmbl_8691,asmbl_8693 scaffold_12 - intron_skips_exon 9687346-9690020 asmbl_8689,asmbl_8694 // Retained and Spliced Intron # retained_intron 9855571-9855735 (orient:-) max_ev_support = 2 # spliced_intron 9855571-9855735 (orient:-) max_ev_support = 1 scaffold_12 - intron 9855571-9855735 asmbl_8698 scaffold_12 - retained_intron 9855571-9855735 asmbl_8697 // Retained and Spliced Intron # retained_intron 9987993-9988214 (orient:-) max_ev_support = 2 # spliced_intron 9987993-9988214 (orient:-) max_ev_support = 2 scaffold_12 - intron 9987993-9988214 asmbl_8709,asmbl_8712 scaffold_12 - retained_intron 9987993-9988214 asmbl_8710 // Exon Skipping and Retention # skipped_exon 10003814-10004420 (orient:-) max_ev_support = 1 # retained_exon 10003911-10004093 (orient:-) max_ev_support = 2 scaffold_12 - retained_exons 10003911-10004093 asmbl_8713,asmbl_8715 scaffold_12 - intron_skips_exon 10003814-10004420 asmbl_8714 // Exon Skipping and Retention # skipped_exon 10004094-10004735 (orient:-) max_ev_support = 2 # retained_exon 10004421-10004603 (orient:-) max_ev_support = 1 scaffold_12 - retained_exons 10004421-10004603 asmbl_8714 scaffold_12 - intron_skips_exon 10004094-10004735 asmbl_8713 // Exon Skipping and Retention # skipped_exon 10187619-10188527 (orient:-) max_ev_support = 2 # retained_exon 10187771-10187904 (orient:-) max_ev_support = 2 scaffold_12 - retained_exons 10187771-10187904 asmbl_8733,asmbl_8734 scaffold_12 - intron_skips_exon 10187619-10188527 asmbl_8731,asmbl_8735,asmbl_8738 // Exon Skipping and Retention # skipped_exon 10187619-10188436 (orient:-) max_ev_support = 2 # retained_exon 10187771-10187904 (orient:-) max_ev_support = 2 scaffold_12 - retained_exons 10187771-10187904 asmbl_8733,asmbl_8734 scaffold_12 - intron_skips_exon 10187619-10188436 asmbl_8732 // Retained and Spliced Intron # retained_intron 10186262-10186424 (orient:-) max_ev_support = 1 # spliced_intron 10186262-10186424 (orient:-) max_ev_support = 2 scaffold_12 - intron 10186262-10186424 asmbl_8731,asmbl_8732,asmbl_8733,asmbl_8734,asmbl_8736,asmbl_8737 scaffold_12 - retained_intron 10186262-10186424 asmbl_8735 // Retained and Spliced Intron # retained_intron 10187905-10188527 (orient:-) max_ev_support = 1 # spliced_intron 10187905-10188527 (orient:-) max_ev_support = 2 scaffold_12 - intron 10187905-10188527 asmbl_8733,asmbl_8734 scaffold_12 - retained_intron 10187905-10188527 asmbl_8736,asmbl_8737 // Retained and Spliced Intron # retained_intron 10187619-10187770 (orient:-) max_ev_support = 1 # spliced_intron 10187619-10187770 (orient:-) max_ev_support = 2 scaffold_12 - intron 10187619-10187770 asmbl_8733 scaffold_12 - retained_intron 10187619-10187770 asmbl_8737 // Retained and Spliced Intron # retained_intron 10187619-10188436 (orient:-) max_ev_support = 1 # spliced_intron 10187619-10188436 (orient:-) max_ev_support = 2 scaffold_12 - intron 10187619-10188436 asmbl_8732 scaffold_12 - retained_intron 10187619-10188436 asmbl_8737 // Retained and Spliced Intron # retained_intron 10187619-10188527 (orient:-) max_ev_support = 1 # spliced_intron 10187619-10188527 (orient:-) max_ev_support = 2 scaffold_12 - intron 10187619-10188527 asmbl_8731,asmbl_8735,asmbl_8738 scaffold_12 - retained_intron 10187619-10188527 asmbl_8737 // Retained and Spliced Intron # retained_intron 10187622-10187770 (orient:-) max_ev_support = 1 # spliced_intron 10187622-10187770 (orient:-) max_ev_support = 1 scaffold_12 - intron 10187622-10187770 asmbl_8734,asmbl_8736 scaffold_12 - retained_intron 10187622-10187770 asmbl_8737 // Retained and Spliced Intron # retained_intron 10187010-10187126 (orient:-) max_ev_support = 1 # spliced_intron 10187010-10187126 (orient:-) max_ev_support = 2 scaffold_12 - intron 10187010-10187126 asmbl_8731,asmbl_8732,asmbl_8733,asmbl_8734,asmbl_8735,asmbl_8736,asmbl_8737 scaffold_12 - retained_intron 10187010-10187126 asmbl_8738 // Retained and Spliced Intron # retained_intron 10341771-10341927 (orient:-) max_ev_support = 2 # spliced_intron 10341771-10341927 (orient:-) max_ev_support = 2 scaffold_12 - intron 10341771-10341927 asmbl_8744 scaffold_12 - retained_intron 10341771-10341927 asmbl_8745 // Retained and Spliced Intron # retained_intron 11690593-11690936 (orient:-) max_ev_support = 2 # spliced_intron 11690593-11690936 (orient:-) max_ev_support = 2 scaffold_12 - intron 11690593-11690936 asmbl_8824 scaffold_12 - retained_intron 11690593-11690936 asmbl_8823 // Exon Skipping and Retention # skipped_exon 11915465-11917767 (orient:-) max_ev_support = 3 # retained_exon 11915921-11916018 (orient:-) max_ev_support = 1 scaffold_12 - retained_exons 11915921-11916018 asmbl_8836 scaffold_12 - intron_skips_exon 11915465-11917767 asmbl_8835 // Retained and Spliced Intron # retained_intron 12003833-12004558 (orient:-) max_ev_support = 2 # spliced_intron 12003833-12004558 (orient:-) max_ev_support = 3 scaffold_12 - intron 12003833-12004558 asmbl_8845 scaffold_12 - retained_intron 12003833-12004558 asmbl_8846,asmbl_8847 // Retained and Spliced Intron # retained_intron 12005072-12005349 (orient:-) max_ev_support = 2 # spliced_intron 12005072-12005349 (orient:-) max_ev_support = 3 scaffold_12 - intron 12005072-12005349 asmbl_8845,asmbl_8846 scaffold_12 - retained_intron 12005072-12005349 asmbl_8847 // Retained and Spliced Intron # retained_intron 12285468-12285562 (orient:-) max_ev_support = 1 # spliced_intron 12285468-12285562 (orient:-) max_ev_support = 1 scaffold_12 - intron 12285468-12285562 asmbl_8852 scaffold_12 - retained_intron 12285468-12285562 asmbl_8853 // Retained and Spliced Intron # retained_intron 12285468-12285624 (orient:-) max_ev_support = 1 # spliced_intron 12285468-12285624 (orient:-) max_ev_support = 3 scaffold_12 - intron 12285468-12285624 asmbl_8851 scaffold_12 - retained_intron 12285468-12285624 asmbl_8853 // Retained and Spliced Intron # retained_intron 12288575-12288996 (orient:-) max_ev_support = 1 # spliced_intron 12288575-12288996 (orient:-) max_ev_support = 1 scaffold_12 - intron 12288575-12288996 asmbl_8859 scaffold_12 - retained_intron 12288575-12288996 asmbl_8854,asmbl_8855,asmbl_8856,asmbl_8858 // Retained and Spliced Intron # retained_intron 12291136-12292234 (orient:-) max_ev_support = 5 # spliced_intron 12291136-12292234 (orient:-) max_ev_support = 1 scaffold_12 - intron 12291136-12292234 asmbl_8859 scaffold_12 - retained_intron 12291136-12292234 asmbl_8854,asmbl_8855 // Retained and Spliced Intron # retained_intron 12291139-12292234 (orient:-) max_ev_support = 5 # spliced_intron 12291139-12292234 (orient:-) max_ev_support = 1 scaffold_12 - intron 12291139-12292234 asmbl_8856,asmbl_8858 scaffold_12 - retained_intron 12291139-12292234 asmbl_8854,asmbl_8855 // Retained and Spliced Intron # retained_intron 12287220-12287724 (orient:-) max_ev_support = 3 # spliced_intron 12287220-12287724 (orient:-) max_ev_support = 1 scaffold_12 - intron 12287220-12287724 asmbl_8854,asmbl_8857,asmbl_8859 scaffold_12 - retained_intron 12287220-12287724 asmbl_8855,asmbl_8856,asmbl_8858 // Retained and Spliced Intron # retained_intron 12288119-12288532 (orient:-) max_ev_support = 3 # spliced_intron 12288119-12288532 (orient:-) max_ev_support = 1 scaffold_12 - intron 12288119-12288532 asmbl_8854,asmbl_8858,asmbl_8859 scaffold_12 - retained_intron 12288119-12288532 asmbl_8855,asmbl_8856 // Retained and Spliced Intron # retained_intron 12287762-12287963 (orient:-) max_ev_support = 3 # spliced_intron 12287762-12287963 (orient:-) max_ev_support = 1 scaffold_12 - intron 12287762-12287963 asmbl_8854,asmbl_8855,asmbl_8858,asmbl_8859 scaffold_12 - retained_intron 12287762-12287963 asmbl_8856,asmbl_8857 // Retained and Spliced Intron # retained_intron 12341400-12341510 (orient:-) max_ev_support = 2 # spliced_intron 12341400-12341510 (orient:-) max_ev_support = 2 scaffold_12 - intron 12341400-12341510 asmbl_8874,asmbl_8876 scaffold_12 - retained_intron 12341400-12341510 asmbl_8875 // Retained and Spliced Intron # retained_intron 12836971-12837042 (orient:-) max_ev_support = 1 # spliced_intron 12836971-12837042 (orient:-) max_ev_support = 1 scaffold_12 - intron 12836971-12837042 asmbl_8893 scaffold_12 - retained_intron 12836971-12837042 asmbl_8894 // Exon Skipping and Retention # skipped_exon 13030042-13031704 (orient:-) max_ev_support = 2 # retained_exon 13031511-13031581 (orient:-) max_ev_support = 1 scaffold_12 - retained_exons 13031511-13031581 asmbl_8902 scaffold_12 - intron_skips_exon 13030042-13031704 asmbl_8901 // Exon Skipping and Retention # skipped_exon 13030949-13031704 (orient:-) max_ev_support = 1 # retained_exon 13031511-13031581 (orient:-) max_ev_support = 1 scaffold_12 - retained_exons 13031511-13031581 asmbl_8902 scaffold_12 - intron_skips_exon 13030949-13031704 asmbl_8903,asmbl_8904 // Exon Skipping and Retention # skipped_exon 13030042-13031510 (orient:-) max_ev_support = 1 # retained_exon 13030878-13030948 (orient:-) max_ev_support = 1 scaffold_12 - retained_exons 13030878-13030948 asmbl_8903,asmbl_8904 scaffold_12 - intron_skips_exon 13030042-13031510 asmbl_8902 // Retained and Spliced Intron # retained_intron 13049284-13049664 (orient:-) max_ev_support = 3 # spliced_intron 13049284-13049664 (orient:-) max_ev_support = 2 scaffold_12 - intron 13049284-13049664 asmbl_8911 scaffold_12 - retained_intron 13049284-13049664 asmbl_8910 // Retained and Spliced Intron # retained_intron 14045126-14045217 (orient:-) max_ev_support = 2 # spliced_intron 14045126-14045217 (orient:-) max_ev_support = 1 scaffold_12 - intron 14045126-14045217 asmbl_8961,asmbl_8963 scaffold_12 - retained_intron 14045126-14045217 asmbl_8960 // Retained and Spliced Intron # retained_intron 14045126-14045229 (orient:-) max_ev_support = 2 # spliced_intron 14045126-14045229 (orient:-) max_ev_support = 1 scaffold_12 - intron 14045126-14045229 asmbl_8962,asmbl_8964 scaffold_12 - retained_intron 14045126-14045229 asmbl_8960 // Retained and Spliced Intron # retained_intron 14100592-14100679 (orient:-) max_ev_support = 2 # spliced_intron 14100592-14100679 (orient:-) max_ev_support = 3 scaffold_12 - intron 14100592-14100679 asmbl_8973 scaffold_12 - retained_intron 14100592-14100679 asmbl_8974 // Exon Skipping and Retention # skipped_exon 14107246-14107823 (orient:-) max_ev_support = 2 # retained_exon 14107535-14107552 (orient:-) max_ev_support = 2 scaffold_12 - retained_exons 14107535-14107552 asmbl_8975,asmbl_8982,asmbl_8983,asmbl_8984,asmbl_8985 scaffold_12 - intron_skips_exon 14107246-14107823 asmbl_8978,asmbl_8979,asmbl_8980,asmbl_8981 // Retained and Spliced Intron # retained_intron 14104565-14104838 (orient:-) max_ev_support = 2 # spliced_intron 14104565-14104838 (orient:-) max_ev_support = 2 scaffold_12 - intron 14104565-14104838 asmbl_8980,asmbl_8981,asmbl_8982,asmbl_8985 scaffold_12 - retained_intron 14104565-14104838 asmbl_8976 // Exon Skipping and Retention # skipped_exon 14104032-14104838 (orient:-) max_ev_support = 2 # retained_exon 14104459-14104564 (orient:-) max_ev_support = 2 scaffold_12 - retained_exons 14104459-14104564 asmbl_8980,asmbl_8985 scaffold_12 - intron_skips_exon 14104032-14104838 asmbl_8975,asmbl_8978,asmbl_8979,asmbl_8983,asmbl_8984 // Exon Skipping and Retention # skipped_exon 14104032-14104838 (orient:-) max_ev_support = 2 # retained_exon 14104510-14104564 (orient:-) max_ev_support = 2 scaffold_12 - retained_exons 14104510-14104564 asmbl_8981,asmbl_8982 scaffold_12 - intron_skips_exon 14104032-14104838 asmbl_8975,asmbl_8978,asmbl_8979,asmbl_8983,asmbl_8984 // Exon Skipping and Retention # skipped_exon 14104916-14105373 (orient:-) max_ev_support = 2 # retained_exon 14105030-14105111 (orient:-) max_ev_support = 1 scaffold_12 - retained_exons 14105030-14105111 asmbl_8983 scaffold_12 - intron_skips_exon 14104916-14105373 asmbl_8975,asmbl_8976,asmbl_8978,asmbl_8979,asmbl_8980,asmbl_8981,asmbl_8982,asmbl_8984,asmbl_8985 // Retained and Spliced Intron # retained_intron 14125377-14125446 (orient:-) max_ev_support = 2 # spliced_intron 14125377-14125446 (orient:-) max_ev_support = 2 scaffold_12 - intron 14125377-14125446 asmbl_8992 scaffold_12 - retained_intron 14125377-14125446 asmbl_8988,asmbl_8990,asmbl_8993 // Retained and Spliced Intron # retained_intron 14123203-14123414 (orient:-) max_ev_support = 3 # spliced_intron 14123203-14123414 (orient:-) max_ev_support = 2 scaffold_12 - intron 14123203-14123414 asmbl_8988,asmbl_8990 scaffold_12 - retained_intron 14123203-14123414 asmbl_8991,asmbl_8992 // Retained and Spliced Intron # retained_intron 14123567-14123697 (orient:-) max_ev_support = 3 # spliced_intron 14123567-14123697 (orient:-) max_ev_support = 2 scaffold_12 - intron 14123567-14123697 asmbl_8988,asmbl_8990,asmbl_8992 scaffold_12 - retained_intron 14123567-14123697 asmbl_8991 // Retained and Spliced Intron # retained_intron 14123813-14123946 (orient:-) max_ev_support = 3 # spliced_intron 14123813-14123946 (orient:-) max_ev_support = 2 scaffold_12 - intron 14123813-14123946 asmbl_8988,asmbl_8990,asmbl_8992 scaffold_12 - retained_intron 14123813-14123946 asmbl_8991 // Retained and Spliced Intron # retained_intron 14124654-14125258 (orient:-) max_ev_support = 2 # spliced_intron 14124654-14125258 (orient:-) max_ev_support = 2 scaffold_12 - intron 14124654-14125258 asmbl_8988,asmbl_8989,asmbl_8990,asmbl_8992 scaffold_12 - retained_intron 14124654-14125258 asmbl_8993 // Retained and Spliced Intron # retained_intron 14184773-14185070 (orient:-) max_ev_support = 1 # spliced_intron 14184773-14185070 (orient:-) max_ev_support = 2 scaffold_12 - intron 14184773-14185070 asmbl_8995,asmbl_8998,asmbl_8999 scaffold_12 - retained_intron 14184773-14185070 asmbl_8997 // Retained and Spliced Intron # retained_intron 14289988-14290450 (orient:-) max_ev_support = 2 # spliced_intron 14289988-14290450 (orient:-) max_ev_support = 2 scaffold_12 - intron 14289988-14290450 asmbl_9006,asmbl_9008 scaffold_12 - retained_intron 14289988-14290450 asmbl_9004,asmbl_9005 // Retained and Spliced Intron # retained_intron 14289469-14289681 (orient:-) max_ev_support = 2 # spliced_intron 14289469-14289681 (orient:-) max_ev_support = 2 scaffold_12 - intron 14289469-14289681 asmbl_9004,asmbl_9006,asmbl_9009 scaffold_12 - retained_intron 14289469-14289681 asmbl_9005,asmbl_9008 // Retained and Spliced Intron # retained_intron 14944862-14945190 (orient:-) max_ev_support = 2 # spliced_intron 14944862-14945190 (orient:-) max_ev_support = 3 scaffold_12 - intron 14944862-14945190 asmbl_9016,asmbl_9017 scaffold_12 - retained_intron 14944862-14945190 asmbl_9018 // Retained and Spliced Intron # retained_intron 14990698-14991070 (orient:-) max_ev_support = 2 # spliced_intron 14990698-14991070 (orient:-) max_ev_support = 3 scaffold_12 - intron 14990698-14991070 asmbl_9025 scaffold_12 - retained_intron 14990698-14991070 asmbl_9024 // Exon Skipping and Retention # skipped_exon 14989527-14991070 (orient:-) max_ev_support = 3 # retained_exon 14990638-14990697 (orient:-) max_ev_support = 3 scaffold_12 - retained_exons 14990638-14990697 asmbl_9025 scaffold_12 - intron_skips_exon 14989527-14991070 asmbl_9026 // Retained and Spliced Intron # retained_intron 14988995-14989423 (orient:-) max_ev_support = 2 # spliced_intron 14988995-14989423 (orient:-) max_ev_support = 3 scaffold_12 - intron 14988995-14989423 asmbl_9024,asmbl_9025,asmbl_9026 scaffold_12 - retained_intron 14988995-14989423 asmbl_9027 // Retained and Spliced Intron # retained_intron 14989527-14989688 (orient:-) max_ev_support = 2 # spliced_intron 14989527-14989688 (orient:-) max_ev_support = 3 scaffold_12 - intron 14989527-14989688 asmbl_9024 scaffold_12 - retained_intron 14989527-14989688 asmbl_9027 // Retained and Spliced Intron # retained_intron 15012722-15012846 (orient:-) max_ev_support = 2 # spliced_intron 15012722-15012846 (orient:-) max_ev_support = 2 scaffold_12 - intron 15012722-15012846 asmbl_9033,asmbl_9035 scaffold_12 - retained_intron 15012722-15012846 asmbl_9032,asmbl_9034,asmbl_9036 // Retained and Spliced Intron # retained_intron 15014286-15014615 (orient:-) max_ev_support = 2 # spliced_intron 15014286-15014615 (orient:-) max_ev_support = 2 scaffold_12 - intron 15014286-15014615 asmbl_9032,asmbl_9035 scaffold_12 - retained_intron 15014286-15014615 asmbl_9033,asmbl_9036 // Retained and Spliced Intron # retained_intron 15013574-15013828 (orient:-) max_ev_support = 1 # spliced_intron 15013574-15013828 (orient:-) max_ev_support = 2 scaffold_12 - intron 15013574-15013828 asmbl_9032,asmbl_9033,asmbl_9035,asmbl_9036 scaffold_12 - retained_intron 15013574-15013828 asmbl_9034 // Retained and Spliced Intron # retained_intron 15094938-15096253 (orient:-) max_ev_support = 3 # spliced_intron 15094938-15096253 (orient:-) max_ev_support = 2 scaffold_12 - intron 15094938-15096253 asmbl_9047 scaffold_12 - retained_intron 15094938-15096253 asmbl_9045 // Exon Skipping and Retention # skipped_exon 15094938-15097184 (orient:-) max_ev_support = 1 # retained_exon 15096254-15096945 (orient:-) max_ev_support = 2 scaffold_12 - retained_exons 15096254-15096310,15096865-15096945 asmbl_9047 scaffold_12 - intron_skips_exon 15094938-15097184 asmbl_9044 // Retained and Spliced Intron # retained_intron 15425487-15425594 (orient:-) max_ev_support = 1 # spliced_intron 15425487-15425594 (orient:-) max_ev_support = 2 scaffold_12 - intron 15425487-15425594 asmbl_9078,asmbl_9079 scaffold_12 - retained_intron 15425487-15425594 asmbl_9080 // Exon Skipping and Retention # skipped_exon 15678894-15680570 (orient:-) max_ev_support = 2 # retained_exon 15679641-15679763 (orient:-) max_ev_support = 2 scaffold_12 - retained_exons 15679641-15679763 asmbl_9092,asmbl_9094,asmbl_9095 scaffold_12 - intron_skips_exon 15678894-15680570 asmbl_9093 // Retained and Spliced Intron # retained_intron 15773119-15773403 (orient:-) max_ev_support = 2 # spliced_intron 15773119-15773403 (orient:-) max_ev_support = 2 scaffold_12 - intron 15773119-15773403 asmbl_9100 scaffold_12 - retained_intron 15773119-15773403 asmbl_9101 // Retained and Spliced Intron # retained_intron 16182802-16183019 (orient:-) max_ev_support = 1 # spliced_intron 16182802-16183019 (orient:-) max_ev_support = 3 scaffold_12 - intron 16182802-16183019 asmbl_9103,asmbl_9104 scaffold_12 - retained_intron 16182802-16183019 asmbl_9105 // Retained and Spliced Intron # retained_intron 16721517-16721700 (orient:-) max_ev_support = 2 # spliced_intron 16721517-16721700 (orient:-) max_ev_support = 2 scaffold_12 - intron 16721517-16721700 asmbl_9139 scaffold_12 - retained_intron 16721517-16721700 asmbl_9138 // Retained and Spliced Intron # retained_intron 350724-350855 (orient:-) max_ev_support = 2 # spliced_intron 350724-350855 (orient:-) max_ev_support = 3 scaffold_13 - intron 350724-350855 asmbl_9300,asmbl_9301,asmbl_9303,asmbl_9304 scaffold_13 - retained_intron 350724-350855 asmbl_9302 // Retained and Spliced Intron # retained_intron 352039-352293 (orient:-) max_ev_support = 2 # spliced_intron 352039-352293 (orient:-) max_ev_support = 3 scaffold_13 - intron 352039-352293 asmbl_9300,asmbl_9301,asmbl_9302,asmbl_9304 scaffold_13 - retained_intron 352039-352293 asmbl_9303 // Retained and Spliced Intron # retained_intron 352660-353097 (orient:-) max_ev_support = 2 # spliced_intron 352660-353097 (orient:-) max_ev_support = 3 scaffold_13 - intron 352660-353097 asmbl_9300,asmbl_9301,asmbl_9302,asmbl_9303 scaffold_13 - retained_intron 352660-353097 asmbl_9304 // Exon Skipping and Retention # skipped_exon 366181-366931 (orient:-) max_ev_support = 1 # retained_exon 366291-366561 (orient:-) max_ev_support = 3 scaffold_13 - retained_exons 366291-366561 asmbl_9307 scaffold_13 - intron_skips_exon 366181-366931 asmbl_9317 // Retained and Spliced Intron # retained_intron 360693-360785 (orient:-) max_ev_support = 2 # spliced_intron 360693-360785 (orient:-) max_ev_support = 3 scaffold_13 - intron 360693-360785 asmbl_9305,asmbl_9306,asmbl_9307,asmbl_9314,asmbl_9316,asmbl_9317,asmbl_9318 scaffold_13 - retained_intron 360693-360785 asmbl_9312,asmbl_9313 // Retained and Spliced Intron # retained_intron 381828-381913 (orient:-) max_ev_support = 1 # spliced_intron 381828-381913 (orient:-) max_ev_support = 2 scaffold_13 - intron 381828-381913 asmbl_9322 scaffold_13 - retained_intron 381828-381913 asmbl_9324,asmbl_9325 // Retained and Spliced Intron # retained_intron 381874-382053 (orient:-) max_ev_support = 1 # spliced_intron 381874-382053 (orient:-) max_ev_support = 2 scaffold_13 - intron 381874-382053 asmbl_9323,asmbl_9326 scaffold_13 - retained_intron 381874-382053 asmbl_9324,asmbl_9325 // Exon Skipping and Retention # skipped_exon 393369-393774 (orient:-) max_ev_support = 2 # retained_exon 393534-393651 (orient:-) max_ev_support = 3 scaffold_13 - retained_exons 393534-393651 asmbl_9334,asmbl_9335,asmbl_9342,asmbl_9343,asmbl_9344,asmbl_9346,asmbl_9347,asmbl_9348,asmbl_9349,asmbl_9351,asmbl_9352,asmbl_9353,asmbl_9354 scaffold_13 - intron_skips_exon 393369-393774 asmbl_9345 // Exon Skipping and Retention # skipped_exon 398875-400388 (orient:-) max_ev_support = 2 # retained_exon 400050-400121 (orient:-) max_ev_support = 3 scaffold_13 - retained_exons 400050-400121 asmbl_9334,asmbl_9335,asmbl_9342,asmbl_9343,asmbl_9344,asmbl_9345,asmbl_9346,asmbl_9347,asmbl_9348,asmbl_9349,asmbl_9352,asmbl_9354 scaffold_13 - intron_skips_exon 398875-400388 asmbl_9339 // Retained and Spliced Intron # retained_intron 393652-393774 (orient:-) max_ev_support = 2 # spliced_intron 393652-393774 (orient:-) max_ev_support = 3 scaffold_13 - intron 393652-393774 asmbl_9334,asmbl_9335,asmbl_9342,asmbl_9343,asmbl_9344,asmbl_9346,asmbl_9347,asmbl_9348,asmbl_9349,asmbl_9351,asmbl_9352,asmbl_9353,asmbl_9354 scaffold_13 - retained_intron 393652-393774 asmbl_9336 // Retained and Spliced Intron # retained_intron 398875-400049 (orient:-) max_ev_support = 2 # spliced_intron 398875-400049 (orient:-) max_ev_support = 3 scaffold_13 - intron 398875-400049 asmbl_9334,asmbl_9335,asmbl_9342,asmbl_9343,asmbl_9344,asmbl_9345,asmbl_9346,asmbl_9347,asmbl_9348,asmbl_9349,asmbl_9352,asmbl_9354 scaffold_13 - retained_intron 398875-400049 asmbl_9337,asmbl_9338,asmbl_9341,asmbl_9350 // Retained and Spliced Intron # retained_intron 400473-401576 (orient:-) max_ev_support = 2 # spliced_intron 400473-401576 (orient:-) max_ev_support = 3 scaffold_13 - intron 400473-401576 asmbl_9334,asmbl_9335,asmbl_9342,asmbl_9343,asmbl_9344,asmbl_9345,asmbl_9346,asmbl_9347,asmbl_9348,asmbl_9349,asmbl_9352,asmbl_9354 scaffold_13 - retained_intron 400473-401576 asmbl_9337,asmbl_9338,asmbl_9339,asmbl_9341,asmbl_9350 // Retained and Spliced Intron # retained_intron 398875-400388 (orient:-) max_ev_support = 2 # spliced_intron 398875-400388 (orient:-) max_ev_support = 2 scaffold_13 - intron 398875-400388 asmbl_9339 scaffold_13 - retained_intron 398875-400388 asmbl_9338,asmbl_9341 // Retained and Spliced Intron # retained_intron 400122-400388 (orient:-) max_ev_support = 2 # spliced_intron 400122-400388 (orient:-) max_ev_support = 3 scaffold_13 - intron 400122-400388 asmbl_9334,asmbl_9335,asmbl_9337,asmbl_9342,asmbl_9343,asmbl_9344,asmbl_9345,asmbl_9346,asmbl_9347,asmbl_9348,asmbl_9349,asmbl_9350,asmbl_9352,asmbl_9354 scaffold_13 - retained_intron 400122-400388 asmbl_9338,asmbl_9341 // Exon Skipping and Retention # skipped_exon 394206-395582 (orient:-) max_ev_support = 3 # retained_exon 394757-394777 (orient:-) max_ev_support = 2 scaffold_13 - retained_exons 394757-394777 asmbl_9342,asmbl_9344,asmbl_9347,asmbl_9352,asmbl_9353,asmbl_9354 scaffold_13 - intron_skips_exon 394206-395582 asmbl_9334,asmbl_9335,asmbl_9345,asmbl_9349,asmbl_9351 // Retained and Spliced Intron # retained_intron 394206-394756 (orient:-) max_ev_support = 2 # spliced_intron 394206-394756 (orient:-) max_ev_support = 2 scaffold_13 - intron 394206-394756 asmbl_9342,asmbl_9344,asmbl_9347,asmbl_9352,asmbl_9353,asmbl_9354 scaffold_13 - retained_intron 394206-394756 asmbl_9343,asmbl_9346,asmbl_9348 // Retained and Spliced Intron # retained_intron 394206-395582 (orient:-) max_ev_support = 2 # spliced_intron 394206-395582 (orient:-) max_ev_support = 3 scaffold_13 - intron 394206-395582 asmbl_9334,asmbl_9335,asmbl_9345,asmbl_9349,asmbl_9351 scaffold_13 - retained_intron 394206-395582 asmbl_9343,asmbl_9346,asmbl_9348 // Retained and Spliced Intron # retained_intron 394778-395582 (orient:-) max_ev_support = 2 # spliced_intron 394778-395582 (orient:-) max_ev_support = 2 scaffold_13 - intron 394778-395582 asmbl_9342,asmbl_9344,asmbl_9347,asmbl_9352,asmbl_9353,asmbl_9354 scaffold_13 - retained_intron 394778-395582 asmbl_9343,asmbl_9346,asmbl_9348 // Exon Skipping and Retention # skipped_exon 405375-406892 (orient:-) max_ev_support = 3 # retained_exon 405973-406064 (orient:-) max_ev_support = 2 scaffold_13 - retained_exons 405973-406064 asmbl_9343,asmbl_9347,asmbl_9349,asmbl_9354 scaffold_13 - intron_skips_exon 405375-406892 asmbl_9335,asmbl_9344,asmbl_9345,asmbl_9346,asmbl_9352 // Retained and Spliced Intron # retained_intron 530723-531277 (orient:-) max_ev_support = 3 # spliced_intron 530723-531277 (orient:-) max_ev_support = 1 scaffold_13 - intron 530723-531277 asmbl_9357 scaffold_13 - retained_intron 530723-531277 asmbl_9356 // Retained and Spliced Intron # retained_intron 537327-537809 (orient:-) max_ev_support = 3 # spliced_intron 537327-537809 (orient:-) max_ev_support = 2 scaffold_13 - intron 537327-537809 asmbl_9360,asmbl_9363 scaffold_13 - retained_intron 537327-537809 asmbl_9358,asmbl_9359,asmbl_9361,asmbl_9362 // Retained and Spliced Intron # retained_intron 534534-534705 (orient:-) max_ev_support = 2 # spliced_intron 534534-534705 (orient:-) max_ev_support = 3 scaffold_13 - intron 534534-534705 asmbl_9358,asmbl_9360,asmbl_9361,asmbl_9362,asmbl_9363 scaffold_13 - retained_intron 534534-534705 asmbl_9359 // Retained and Spliced Intron # retained_intron 534811-534931 (orient:-) max_ev_support = 2 # spliced_intron 534811-534931 (orient:-) max_ev_support = 3 scaffold_13 - intron 534811-534931 asmbl_9358,asmbl_9360 scaffold_13 - retained_intron 534811-534931 asmbl_9361 // Retained and Spliced Intron # retained_intron 534832-534931 (orient:-) max_ev_support = 2 # spliced_intron 534832-534931 (orient:-) max_ev_support = 2 scaffold_13 - intron 534832-534931 asmbl_9359,asmbl_9362,asmbl_9363 scaffold_13 - retained_intron 534832-534931 asmbl_9361 // Retained and Spliced Intron # retained_intron 663297-663385 (orient:-) max_ev_support = 2 # spliced_intron 663297-663385 (orient:-) max_ev_support = 3 scaffold_13 - intron 663297-663385 asmbl_9364,asmbl_9365,asmbl_9367,asmbl_9368 scaffold_13 - retained_intron 663297-663385 asmbl_9366 // Exon Skipping and Retention # skipped_exon 902810-904334 (orient:-) max_ev_support = 3 # retained_exon 903026-903309 (orient:-) max_ev_support = 1 scaffold_13 - retained_exons 903026-903309 asmbl_9383 scaffold_13 - intron_skips_exon 902810-904334 asmbl_9376,asmbl_9380,asmbl_9381,asmbl_9382,asmbl_9384,asmbl_9385 // Retained and Spliced Intron # retained_intron 925797-925912 (orient:-) max_ev_support = 1 # spliced_intron 925797-925912 (orient:-) max_ev_support = 2 scaffold_13 - intron 925797-925912 asmbl_9388 scaffold_13 - retained_intron 925797-925912 asmbl_9389 // Retained and Spliced Intron # retained_intron 989090-989193 (orient:-) max_ev_support = 2 # spliced_intron 989090-989193 (orient:-) max_ev_support = 3 scaffold_13 - intron 989090-989193 asmbl_9394 scaffold_13 - retained_intron 989090-989193 asmbl_9395 // Exon Skipping and Retention # skipped_exon 1361221-1361994 (orient:-) max_ev_support = 1 # retained_exon 1361665-1361791 (orient:-) max_ev_support = 2 scaffold_13 - retained_exons 1361665-1361791 asmbl_9401 scaffold_13 - intron_skips_exon 1361221-1361994 asmbl_9403 // Exon Skipping and Retention # skipped_exon 1380070-1380423 (orient:-) max_ev_support = 1 # retained_exon 1380204-1380337 (orient:-) max_ev_support = 2 scaffold_13 - retained_exons 1380204-1380337 asmbl_9404,asmbl_9405 scaffold_13 - intron_skips_exon 1380070-1380423 asmbl_9406,asmbl_9407 // Exon Skipping and Retention # skipped_exon 1378319-1378521 (orient:-) max_ev_support = 2 # retained_exon 1378408-1378452 (orient:-) max_ev_support = 1 scaffold_13 - retained_exons 1378408-1378452 asmbl_9405,asmbl_9407 scaffold_13 - intron_skips_exon 1378319-1378521 asmbl_9404,asmbl_9406,asmbl_9408 // Exon Skipping and Retention # skipped_exon 1524599-1526885 (orient:-) max_ev_support = 3 # retained_exon 1526310-1526387 (orient:-) max_ev_support = 2 scaffold_13 - retained_exons 1526310-1526387 asmbl_9415,asmbl_9416 scaffold_13 - intron_skips_exon 1524599-1526885 asmbl_9414,asmbl_9418 // Retained and Spliced Intron # retained_intron 2270204-2270425 (orient:-) max_ev_support = 3 # spliced_intron 2270204-2270425 (orient:-) max_ev_support = 2 scaffold_13 - intron 2270204-2270425 asmbl_9439,asmbl_9444,asmbl_9445,asmbl_9447,asmbl_9448,asmbl_9449 scaffold_13 - retained_intron 2270204-2270425 asmbl_9437,asmbl_9438,asmbl_9441,asmbl_9442,asmbl_9443 // Retained and Spliced Intron # retained_intron 2271214-2271358 (orient:-) max_ev_support = 3 # spliced_intron 2271214-2271358 (orient:-) max_ev_support = 2 scaffold_13 - intron 2271214-2271358 asmbl_9439,asmbl_9440,asmbl_9444,asmbl_9447,asmbl_9448,asmbl_9449 scaffold_13 - retained_intron 2271214-2271358 asmbl_9437,asmbl_9438,asmbl_9441,asmbl_9442,asmbl_9443,asmbl_9445 // Retained and Spliced Intron # retained_intron 2271676-2271815 (orient:-) max_ev_support = 3 # spliced_intron 2271676-2271815 (orient:-) max_ev_support = 2 scaffold_13 - intron 2271676-2271815 asmbl_9439,asmbl_9444,asmbl_9445,asmbl_9447,asmbl_9448 scaffold_13 - retained_intron 2271676-2271815 asmbl_9437,asmbl_9438,asmbl_9440,asmbl_9441,asmbl_9442,asmbl_9443,asmbl_9449 // Retained and Spliced Intron # retained_intron 2271926-2272065 (orient:-) max_ev_support = 3 # spliced_intron 2271926-2272065 (orient:-) max_ev_support = 2 scaffold_13 - intron 2271926-2272065 asmbl_9439,asmbl_9444,asmbl_9445,asmbl_9446,asmbl_9447,asmbl_9448,asmbl_9449 scaffold_13 - retained_intron 2271926-2272065 asmbl_9437,asmbl_9438 // Retained and Spliced Intron # retained_intron 2274573-2274820 (orient:-) max_ev_support = 1 # spliced_intron 2274573-2274820 (orient:-) max_ev_support = 2 scaffold_13 - intron 2274573-2274820 asmbl_9444,asmbl_9447 scaffold_13 - retained_intron 2274573-2274820 asmbl_9437,asmbl_9438,asmbl_9445,asmbl_9448,asmbl_9449 // Retained and Spliced Intron # retained_intron 2274573-2277261 (orient:-) max_ev_support = 1 # spliced_intron 2274573-2277261 (orient:-) max_ev_support = 2 scaffold_13 - intron 2274573-2277261 asmbl_9439 scaffold_13 - retained_intron 2274573-2277261 asmbl_9437,asmbl_9438,asmbl_9445,asmbl_9448,asmbl_9449 // Retained and Spliced Intron # retained_intron 2274959-2277261 (orient:-) max_ev_support = 1 # spliced_intron 2274959-2277261 (orient:-) max_ev_support = 2 scaffold_13 - intron 2274959-2277261 asmbl_9444 scaffold_13 - retained_intron 2274959-2277261 asmbl_9437,asmbl_9438,asmbl_9445,asmbl_9447,asmbl_9448,asmbl_9449 // Retained and Spliced Intron # retained_intron 2270481-2270608 (orient:-) max_ev_support = 3 # spliced_intron 2270481-2270608 (orient:-) max_ev_support = 2 scaffold_13 - intron 2270481-2270608 asmbl_9437,asmbl_9439,asmbl_9441,asmbl_9443,asmbl_9444,asmbl_9445,asmbl_9447,asmbl_9448,asmbl_9449 scaffold_13 - retained_intron 2270481-2270608 asmbl_9438,asmbl_9442 // Retained and Spliced Intron # retained_intron 2270688-2270802 (orient:-) max_ev_support = 3 # spliced_intron 2270688-2270802 (orient:-) max_ev_support = 2 scaffold_13 - intron 2270688-2270802 asmbl_9437,asmbl_9439,asmbl_9444,asmbl_9445,asmbl_9447,asmbl_9448,asmbl_9449 scaffold_13 - retained_intron 2270688-2270802 asmbl_9438,asmbl_9441,asmbl_9442,asmbl_9443 // Retained and Spliced Intron # retained_intron 2270956-2271084 (orient:-) max_ev_support = 3 # spliced_intron 2270956-2271084 (orient:-) max_ev_support = 2 scaffold_13 - intron 2270956-2271084 asmbl_9437,asmbl_9439,asmbl_9440,asmbl_9444,asmbl_9445,asmbl_9447,asmbl_9448,asmbl_9449 scaffold_13 - retained_intron 2270956-2271084 asmbl_9438,asmbl_9441,asmbl_9442,asmbl_9443 // Retained and Spliced Intron # retained_intron 2271430-2271533 (orient:-) max_ev_support = 3 # spliced_intron 2271430-2271533 (orient:-) max_ev_support = 2 scaffold_13 - intron 2271430-2271533 asmbl_9437,asmbl_9439,asmbl_9440,asmbl_9442,asmbl_9443,asmbl_9444,asmbl_9445,asmbl_9447,asmbl_9448,asmbl_9449 scaffold_13 - retained_intron 2271430-2271533 asmbl_9438,asmbl_9441 // Retained and Spliced Intron # retained_intron 2272160-2272772 (orient:-) max_ev_support = 1 # spliced_intron 2272160-2272772 (orient:-) max_ev_support = 2 scaffold_13 - intron 2272160-2272772 asmbl_9437,asmbl_9439,asmbl_9444,asmbl_9445,asmbl_9447,asmbl_9448,asmbl_9449 scaffold_13 - retained_intron 2272160-2272772 asmbl_9438,asmbl_9446 // Retained and Spliced Intron # retained_intron 2272879-2273221 (orient:-) max_ev_support = 1 # spliced_intron 2272879-2273221 (orient:-) max_ev_support = 2 scaffold_13 - intron 2272879-2273221 asmbl_9437,asmbl_9439,asmbl_9444,asmbl_9445,asmbl_9447,asmbl_9448,asmbl_9449 scaffold_13 - retained_intron 2272879-2273221 asmbl_9438,asmbl_9446 // Exon Skipping and Retention # skipped_exon 2274573-2277261 (orient:-) max_ev_support = 2 # retained_exon 2274821-2274958 (orient:-) max_ev_support = 2 scaffold_13 - retained_exons 2274821-2274958 asmbl_9444 scaffold_13 - intron_skips_exon 2274573-2277261 asmbl_9439 // Exon Skipping and Retention # skipped_exon 2375080-2376219 (orient:-) max_ev_support = 1 # retained_exon 2375166-2375597 (orient:-) max_ev_support = 2 scaffold_13 - retained_exons 2375166-2375276,2375415-2375597 asmbl_9456,asmbl_9457,asmbl_9458 scaffold_13 - intron_skips_exon 2375080-2376219 asmbl_9459 // Retained and Spliced Intron # retained_intron 2652464-2652553 (orient:-) max_ev_support = 1 # spliced_intron 2652464-2652553 (orient:-) max_ev_support = 2 scaffold_13 - intron 2652464-2652553 asmbl_9467,asmbl_9468,asmbl_9471,asmbl_9472 scaffold_13 - retained_intron 2652464-2652553 asmbl_9470 // Retained and Spliced Intron # retained_intron 2652683-2652800 (orient:-) max_ev_support = 1 # spliced_intron 2652683-2652800 (orient:-) max_ev_support = 2 scaffold_13 - intron 2652683-2652800 asmbl_9467,asmbl_9468,asmbl_9470,asmbl_9472 scaffold_13 - retained_intron 2652683-2652800 asmbl_9471 // Retained and Spliced Intron # retained_intron 2653329-2653423 (orient:-) max_ev_support = 1 # spliced_intron 2653329-2653423 (orient:-) max_ev_support = 2 scaffold_13 - intron 2653329-2653423 asmbl_9468 scaffold_13 - retained_intron 2653329-2653423 asmbl_9472 // Retained and Spliced Intron # retained_intron 2653343-2653584 (orient:-) max_ev_support = 1 # spliced_intron 2653343-2653584 (orient:-) max_ev_support = 2 scaffold_13 - intron 2653343-2653584 asmbl_9467,asmbl_9470,asmbl_9471 scaffold_13 - retained_intron 2653343-2653584 asmbl_9472 // Exon Skipping and Retention # skipped_exon 2660618-2662993 (orient:-) max_ev_support = 2 # retained_exon 2662068-2662117 (orient:-) max_ev_support = 1 scaffold_13 - retained_exons 2662068-2662117 asmbl_9474 scaffold_13 - intron_skips_exon 2660618-2662993 asmbl_9473 // Retained and Spliced Intron # retained_intron 3021498-3021692 (orient:-) max_ev_support = 1 # spliced_intron 3021498-3021692 (orient:-) max_ev_support = 2 scaffold_13 - intron 3021498-3021692 asmbl_9504 scaffold_13 - retained_intron 3021498-3021692 asmbl_9505 // Retained and Spliced Intron # retained_intron 3027963-3028113 (orient:-) max_ev_support = 2 # spliced_intron 3027963-3028113 (orient:-) max_ev_support = 1 scaffold_13 - intron 3027963-3028113 asmbl_9508 scaffold_13 - retained_intron 3027963-3028113 asmbl_9507 // Retained and Spliced Intron # retained_intron 3054628-3054794 (orient:-) max_ev_support = 4 # spliced_intron 3054628-3054794 (orient:-) max_ev_support = 1 scaffold_13 - intron 3054628-3054794 asmbl_9512 scaffold_13 - retained_intron 3054628-3054794 asmbl_9510,asmbl_9511 // Retained and Spliced Intron # retained_intron 3055042-3055287 (orient:-) max_ev_support = 1 # spliced_intron 3055042-3055287 (orient:-) max_ev_support = 2 scaffold_13 - intron 3055042-3055287 asmbl_9510,asmbl_9512 scaffold_13 - retained_intron 3055042-3055287 asmbl_9511 // Retained and Spliced Intron # retained_intron 3092016-3092119 (orient:-) max_ev_support = 1 # spliced_intron 3092016-3092119 (orient:-) max_ev_support = 1 scaffold_13 - intron 3092016-3092119 asmbl_9514 scaffold_13 - retained_intron 3092016-3092119 asmbl_9515 // Retained and Spliced Intron # retained_intron 3322991-3323068 (orient:-) max_ev_support = 2 # spliced_intron 3322991-3323068 (orient:-) max_ev_support = 3 scaffold_13 - intron 3322991-3323068 asmbl_9529,asmbl_9531 scaffold_13 - retained_intron 3322991-3323068 asmbl_9530 // Retained and Spliced Intron # retained_intron 3352875-3353012 (orient:-) max_ev_support = 1 # spliced_intron 3352875-3353012 (orient:-) max_ev_support = 2 scaffold_13 - intron 3352875-3353012 asmbl_9535 scaffold_13 - retained_intron 3352875-3353012 asmbl_9536 // Retained and Spliced Intron # retained_intron 3352902-3353012 (orient:-) max_ev_support = 1 # spliced_intron 3352902-3353012 (orient:-) max_ev_support = 1 scaffold_13 - intron 3352902-3353012 asmbl_9537 scaffold_13 - retained_intron 3352902-3353012 asmbl_9536 // Retained and Spliced Intron # retained_intron 3585540-3585773 (orient:-) max_ev_support = 3 # spliced_intron 3585540-3585773 (orient:-) max_ev_support = 2 scaffold_13 - intron 3585540-3585773 asmbl_9554 scaffold_13 - retained_intron 3585540-3585773 asmbl_9553 // Exon Skipping and Retention # skipped_exon 3613014-3614593 (orient:-) max_ev_support = 2 # retained_exon 3613390-3613446 (orient:-) max_ev_support = 1 scaffold_13 - retained_exons 3613390-3613446 asmbl_9559 scaffold_13 - intron_skips_exon 3613014-3614593 asmbl_9557 // Retained and Spliced Intron # retained_intron 3810685-3810836 (orient:-) max_ev_support = 1 # spliced_intron 3810685-3810836 (orient:-) max_ev_support = 2 scaffold_13 - intron 3810685-3810836 asmbl_9582,asmbl_9584 scaffold_13 - retained_intron 3810685-3810836 asmbl_9585,asmbl_9586 // Retained and Spliced Intron # retained_intron 3811189-3811295 (orient:-) max_ev_support = 1 # spliced_intron 3811189-3811295 (orient:-) max_ev_support = 2 scaffold_13 - intron 3811189-3811295 asmbl_9582,asmbl_9585 scaffold_13 - retained_intron 3811189-3811295 asmbl_9586 // Retained and Spliced Intron # retained_intron 3999070-3999310 (orient:-) max_ev_support = 1 # spliced_intron 3999070-3999310 (orient:-) max_ev_support = 2 scaffold_13 - intron 3999070-3999310 asmbl_9600,asmbl_9602 scaffold_13 - retained_intron 3999070-3999310 asmbl_9601 // Retained and Spliced Intron # retained_intron 4239686-4240251 (orient:-) max_ev_support = 2 # spliced_intron 4239686-4240251 (orient:-) max_ev_support = 1 scaffold_13 - intron 4239686-4240251 asmbl_9612,asmbl_9617 scaffold_13 - retained_intron 4239686-4240251 asmbl_9610,asmbl_9611,asmbl_9614 // Exon Skipping and Retention # skipped_exon 4243305-4244305 (orient:-) max_ev_support = 2 # retained_exon 4243881-4243955 (orient:-) max_ev_support = 2 scaffold_13 - retained_exons 4243881-4243955 asmbl_9610,asmbl_9613,asmbl_9617 scaffold_13 - intron_skips_exon 4243305-4244305 asmbl_9611,asmbl_9614 // Retained and Spliced Intron # retained_intron 4461177-4462126 (orient:-) max_ev_support = 4 # spliced_intron 4461177-4462126 (orient:-) max_ev_support = 1 scaffold_13 - intron 4461177-4462126 asmbl_9633 scaffold_13 - retained_intron 4461177-4462126 asmbl_9631 // Retained and Spliced Intron # retained_intron 4462344-4462579 (orient:-) max_ev_support = 2 # spliced_intron 4462344-4462579 (orient:-) max_ev_support = 2 scaffold_13 - intron 4462344-4462579 asmbl_9631,asmbl_9633 scaffold_13 - retained_intron 4462344-4462579 asmbl_9632 // Retained and Spliced Intron # retained_intron 4602251-4602712 (orient:-) max_ev_support = 3 # spliced_intron 4602251-4602712 (orient:-) max_ev_support = 1 scaffold_13 - intron 4602251-4602712 asmbl_9650 scaffold_13 - retained_intron 4602251-4602712 asmbl_9639,asmbl_9649,asmbl_9652 // Retained and Spliced Intron # retained_intron 4602269-4602712 (orient:-) max_ev_support = 3 # spliced_intron 4602269-4602712 (orient:-) max_ev_support = 2 scaffold_13 - intron 4602269-4602712 asmbl_9647 scaffold_13 - retained_intron 4602269-4602712 asmbl_9639,asmbl_9649,asmbl_9652 // Retained and Spliced Intron # retained_intron 4602805-4604926 (orient:-) max_ev_support = 3 # spliced_intron 4602805-4604926 (orient:-) max_ev_support = 2 scaffold_13 - intron 4602805-4604926 asmbl_9647,asmbl_9648,asmbl_9650,asmbl_9652 scaffold_13 - retained_intron 4602805-4604926 asmbl_9639 // Retained and Spliced Intron # retained_intron 4601282-4601369 (orient:-) max_ev_support = 2 # spliced_intron 4601282-4601369 (orient:-) max_ev_support = 1 scaffold_13 - intron 4601282-4601369 asmbl_9648,asmbl_9649,asmbl_9650,asmbl_9651,asmbl_9652 scaffold_13 - retained_intron 4601282-4601369 asmbl_9640 // Exon Skipping and Retention # skipped_exon 4601442-4602712 (orient:-) max_ev_support = 2 # retained_exon 4602224-4602268 (orient:-) max_ev_support = 2 scaffold_13 - retained_exons 4602224-4602268 asmbl_9647 scaffold_13 - intron_skips_exon 4601442-4602712 asmbl_9646,asmbl_9648 // Exon Skipping and Retention # skipped_exon 4601442-4602712 (orient:-) max_ev_support = 2 # retained_exon 4602224-4602250 (orient:-) max_ev_support = 1 scaffold_13 - retained_exons 4602224-4602250 asmbl_9650 scaffold_13 - intron_skips_exon 4601442-4602712 asmbl_9646,asmbl_9648 // Retained and Spliced Intron # retained_intron 5106775-5107098 (orient:-) max_ev_support = 2 # spliced_intron 5106775-5107098 (orient:-) max_ev_support = 2 scaffold_13 - intron 5106775-5107098 asmbl_9673 scaffold_13 - retained_intron 5106775-5107098 asmbl_9672 // Retained and Spliced Intron # retained_intron 5575373-5575506 (orient:-) max_ev_support = 2 # spliced_intron 5575373-5575506 (orient:-) max_ev_support = 1 scaffold_13 - intron 5575373-5575506 asmbl_9699 scaffold_13 - retained_intron 5575373-5575506 asmbl_9697,asmbl_9698 // Exon Skipping and Retention # skipped_exon 5598978-5599604 (orient:-) max_ev_support = 1 # retained_exon 5599202-5599305 (orient:-) max_ev_support = 1 scaffold_13 - retained_exons 5599202-5599305 asmbl_9701 scaffold_13 - intron_skips_exon 5598978-5599604 asmbl_9700 // Retained and Spliced Intron # retained_intron 5701364-5701646 (orient:-) max_ev_support = 3 # spliced_intron 5701364-5701646 (orient:-) max_ev_support = 2 scaffold_13 - intron 5701364-5701646 asmbl_9708,asmbl_9709 scaffold_13 - retained_intron 5701364-5701646 asmbl_9707 // Exon Skipping and Retention # skipped_exon 5736319-5737303 (orient:-) max_ev_support = 2 # retained_exon 5736655-5736750 (orient:-) max_ev_support = 1 scaffold_13 - retained_exons 5736655-5736750 asmbl_9719 scaffold_13 - intron_skips_exon 5736319-5737303 asmbl_9718 // Retained and Spliced Intron # retained_intron 5841697-5842514 (orient:-) max_ev_support = 1 # spliced_intron 5841697-5842514 (orient:-) max_ev_support = 2 scaffold_13 - intron 5841697-5842514 asmbl_9731 scaffold_13 - retained_intron 5841697-5842514 asmbl_9732 // Exon Skipping and Retention # skipped_exon 5919688-5920404 (orient:-) max_ev_support = 3 # retained_exon 5920103-5920192 (orient:-) max_ev_support = 3 scaffold_13 - retained_exons 5920103-5920192 asmbl_9748 scaffold_13 - intron_skips_exon 5919688-5920404 asmbl_9749 // Retained and Spliced Intron # retained_intron 5949932-5950148 (orient:-) max_ev_support = 1 # spliced_intron 5949932-5950148 (orient:-) max_ev_support = 2 scaffold_13 - intron 5949932-5950148 asmbl_9756,asmbl_9758,asmbl_9759,asmbl_9760 scaffold_13 - retained_intron 5949932-5950148 asmbl_9757,asmbl_9761 // Exon Skipping and Retention # skipped_exon 6047203-6049582 (orient:-) max_ev_support = 2 # retained_exon 6048623-6048724 (orient:-) max_ev_support = 2 scaffold_13 - retained_exons 6048623-6048724 asmbl_9763,asmbl_9766 scaffold_13 - intron_skips_exon 6047203-6049582 asmbl_9765 // Exon Skipping and Retention # skipped_exon 6046307-6048622 (orient:-) max_ev_support = 2 # retained_exon 6047140-6047202 (orient:-) max_ev_support = 2 scaffold_13 - retained_exons 6047140-6047202 asmbl_9765 scaffold_13 - intron_skips_exon 6046307-6048622 asmbl_9763,asmbl_9766 // Retained and Spliced Intron # retained_intron 6431003-6431154 (orient:-) max_ev_support = 2 # spliced_intron 6431003-6431154 (orient:-) max_ev_support = 1 scaffold_13 - intron 6431003-6431154 asmbl_9793,asmbl_9794 scaffold_13 - retained_intron 6431003-6431154 asmbl_9786,asmbl_9790,asmbl_9791,asmbl_9792 // Retained and Spliced Intron # retained_intron 6434028-6434177 (orient:-) max_ev_support = 1 # spliced_intron 6434028-6434177 (orient:-) max_ev_support = 1 scaffold_13 - intron 6434028-6434177 asmbl_9790,asmbl_9792,asmbl_9793,asmbl_9794,asmbl_9795 scaffold_13 - retained_intron 6434028-6434177 asmbl_9791 // Exon Skipping and Retention # skipped_exon 6431276-6433917 (orient:-) max_ev_support = 1 # retained_exon 6433155-6433273 (orient:-) max_ev_support = 1 scaffold_13 - retained_exons 6433155-6433273 asmbl_9795 scaffold_13 - intron_skips_exon 6431276-6433917 asmbl_9790,asmbl_9791,asmbl_9792,asmbl_9793,asmbl_9794 // Retained and Spliced Intron # retained_intron 6602967-6603353 (orient:-) max_ev_support = 2 # spliced_intron 6602967-6603353 (orient:-) max_ev_support = 2 scaffold_13 - intron 6602967-6603353 asmbl_9805 scaffold_13 - retained_intron 6602967-6603353 asmbl_9804 // Retained and Spliced Intron # retained_intron 6619004-6619115 (orient:-) max_ev_support = 2 # spliced_intron 6619004-6619115 (orient:-) max_ev_support = 3 scaffold_13 - intron 6619004-6619115 asmbl_9808 scaffold_13 - retained_intron 6619004-6619115 asmbl_9809 // Retained and Spliced Intron # retained_intron 6628167-6628496 (orient:-) max_ev_support = 2 # spliced_intron 6628167-6628496 (orient:-) max_ev_support = 2 scaffold_13 - intron 6628167-6628496 asmbl_9811 scaffold_13 - retained_intron 6628167-6628496 asmbl_9812 // Retained and Spliced Intron # retained_intron 6628218-6628496 (orient:-) max_ev_support = 2 # spliced_intron 6628218-6628496 (orient:-) max_ev_support = 3 scaffold_13 - intron 6628218-6628496 asmbl_9810 scaffold_13 - retained_intron 6628218-6628496 asmbl_9812 // Retained and Spliced Intron # retained_intron 6949076-6950695 (orient:-) max_ev_support = 2 # spliced_intron 6949076-6950695 (orient:-) max_ev_support = 1 scaffold_13 - intron 6949076-6950695 asmbl_9820 scaffold_13 - retained_intron 6949076-6950695 asmbl_9818,asmbl_9819 // Retained and Spliced Intron # retained_intron 6949079-6949233 (orient:-) max_ev_support = 2 # spliced_intron 6949079-6949233 (orient:-) max_ev_support = 1 scaffold_13 - intron 6949079-6949233 asmbl_9823 scaffold_13 - retained_intron 6949079-6949233 asmbl_9818,asmbl_9819 // Retained and Spliced Intron # retained_intron 6949079-6950695 (orient:-) max_ev_support = 2 # spliced_intron 6949079-6950695 (orient:-) max_ev_support = 1 scaffold_13 - intron 6949079-6950695 asmbl_9821,asmbl_9822 scaffold_13 - retained_intron 6949079-6950695 asmbl_9818,asmbl_9819 // Retained and Spliced Intron # retained_intron 6950776-6951096 (orient:-) max_ev_support = 2 # spliced_intron 6950776-6951096 (orient:-) max_ev_support = 1 scaffold_13 - intron 6950776-6951096 asmbl_9821 scaffold_13 - retained_intron 6950776-6951096 asmbl_9818 // Retained and Spliced Intron # retained_intron 6950776-6951100 (orient:-) max_ev_support = 2 # spliced_intron 6950776-6951100 (orient:-) max_ev_support = 1 scaffold_13 - intron 6950776-6951100 asmbl_9819,asmbl_9820,asmbl_9822,asmbl_9823 scaffold_13 - retained_intron 6950776-6951100 asmbl_9818 // Retained and Spliced Intron # retained_intron 7002522-7002602 (orient:-) max_ev_support = 1 # spliced_intron 7002522-7002602 (orient:-) max_ev_support = 2 scaffold_13 - intron 7002522-7002602 asmbl_9831 scaffold_13 - retained_intron 7002522-7002602 asmbl_9832 // Retained and Spliced Intron # retained_intron 7085089-7085351 (orient:-) max_ev_support = 1 # spliced_intron 7085089-7085351 (orient:-) max_ev_support = 2 scaffold_13 - intron 7085089-7085351 asmbl_9847 scaffold_13 - retained_intron 7085089-7085351 asmbl_9848 // Retained and Spliced Intron # retained_intron 7085246-7085351 (orient:-) max_ev_support = 1 # spliced_intron 7085246-7085351 (orient:-) max_ev_support = 1 scaffold_13 - intron 7085246-7085351 asmbl_9849 scaffold_13 - retained_intron 7085246-7085351 asmbl_9848 // Retained and Spliced Intron # retained_intron 7192850-7192955 (orient:-) max_ev_support = 3 # spliced_intron 7192850-7192955 (orient:-) max_ev_support = 1 scaffold_13 - intron 7192850-7192955 asmbl_9865 scaffold_13 - retained_intron 7192850-7192955 asmbl_9859 // Retained and Spliced Intron # retained_intron 7192853-7192955 (orient:-) max_ev_support = 3 # spliced_intron 7192853-7192955 (orient:-) max_ev_support = 2 scaffold_13 - intron 7192853-7192955 asmbl_9858,asmbl_9863,asmbl_9864,asmbl_9866 scaffold_13 - retained_intron 7192853-7192955 asmbl_9859 // Exon Skipping and Retention # skipped_exon 7268676-7269850 (orient:-) max_ev_support = 1 # retained_exon 7269334-7269452 (orient:-) max_ev_support = 2 scaffold_13 - retained_exons 7269334-7269452 asmbl_9867,asmbl_9871 scaffold_13 - intron_skips_exon 7268676-7269850 asmbl_9868,asmbl_9870 // Retained and Spliced Intron # retained_intron 7265980-7266076 (orient:-) max_ev_support = 1 # spliced_intron 7265980-7266076 (orient:-) max_ev_support = 2 scaffold_13 - intron 7265980-7266076 asmbl_9867,asmbl_9868,asmbl_9870,asmbl_9871 scaffold_13 - retained_intron 7265980-7266076 asmbl_9869 // Retained and Spliced Intron # retained_intron 7266430-7266595 (orient:-) max_ev_support = 1 # spliced_intron 7266430-7266595 (orient:-) max_ev_support = 2 scaffold_13 - intron 7266430-7266595 asmbl_9867,asmbl_9868,asmbl_9870 scaffold_13 - retained_intron 7266430-7266595 asmbl_9871 // Exon Skipping and Retention # skipped_exon 7504347-7505394 (orient:-) max_ev_support = 1 # retained_exon 7504556-7504603 (orient:-) max_ev_support = 2 scaffold_13 - retained_exons 7504556-7504603 asmbl_9884,asmbl_9885,asmbl_9886,asmbl_9890,asmbl_9891,asmbl_9893,asmbl_9894 scaffold_13 - intron_skips_exon 7504347-7505394 asmbl_9889 // Exon Skipping and Retention # skipped_exon 7504347-7506710 (orient:-) max_ev_support = 1 # retained_exon 7504556-7504603 (orient:-) max_ev_support = 2 scaffold_13 - retained_exons 7504556-7504603 asmbl_9884,asmbl_9885,asmbl_9886,asmbl_9890,asmbl_9891,asmbl_9893,asmbl_9894 scaffold_13 - intron_skips_exon 7504347-7506710 asmbl_9892 // Retained and Spliced Intron # retained_intron 7507453-7507966 (orient:-) max_ev_support = 2 # spliced_intron 7507453-7507966 (orient:-) max_ev_support = 2 scaffold_13 - intron 7507453-7507966 asmbl_9885,asmbl_9891 scaffold_13 - retained_intron 7507453-7507966 asmbl_9886 // Exon Skipping and Retention # skipped_exon 7504604-7506710 (orient:-) max_ev_support = 2 # retained_exon 7505395-7506114 (orient:-) max_ev_support = 1 scaffold_13 - retained_exons 7505395-7506114 asmbl_9889,asmbl_9890,asmbl_9893 scaffold_13 - intron_skips_exon 7504604-7506710 asmbl_9885,asmbl_9886,asmbl_9891 // Exon Skipping and Retention # skipped_exon 7504347-7506710 (orient:-) max_ev_support = 1 # retained_exon 7505395-7506114 (orient:-) max_ev_support = 1 scaffold_13 - retained_exons 7505395-7506114 asmbl_9889,asmbl_9890,asmbl_9893 scaffold_13 - intron_skips_exon 7504347-7506710 asmbl_9892 // Retained and Spliced Intron # retained_intron 7501582-7501940 (orient:-) max_ev_support = 1 # spliced_intron 7501582-7501940 (orient:-) max_ev_support = 2 scaffold_13 - intron 7501582-7501940 asmbl_9884,asmbl_9885,asmbl_9886,asmbl_9887,asmbl_9889,asmbl_9890,asmbl_9892 scaffold_13 - retained_intron 7501582-7501940 asmbl_9891,asmbl_9893,asmbl_9894 // Exon Skipping and Retention # skipped_exon 7526169-7528668 (orient:-) max_ev_support = 3 # retained_exon 7527864-7527966 (orient:-) max_ev_support = 3 scaffold_13 - retained_exons 7527864-7527966 asmbl_9898 scaffold_13 - intron_skips_exon 7526169-7528668 asmbl_9897 // Retained and Spliced Intron # retained_intron 7647173-7647583 (orient:-) max_ev_support = 3 # spliced_intron 7647173-7647583 (orient:-) max_ev_support = 1 scaffold_13 - intron 7647173-7647583 asmbl_9901 scaffold_13 - retained_intron 7647173-7647583 asmbl_9900 // Exon Skipping and Retention # skipped_exon 7717856-7718307 (orient:-) max_ev_support = 2 # retained_exon 7718019-7718107 (orient:-) max_ev_support = 2 scaffold_13 - retained_exons 7718019-7718107 asmbl_9904 scaffold_13 - intron_skips_exon 7717856-7718307 asmbl_9903 // Retained and Spliced Intron # retained_intron 7717856-7718018 (orient:-) max_ev_support = 1 # spliced_intron 7717856-7718018 (orient:-) max_ev_support = 2 scaffold_13 - intron 7717856-7718018 asmbl_9904,asmbl_9906 scaffold_13 - retained_intron 7717856-7718018 asmbl_9905 // Retained and Spliced Intron # retained_intron 7717718-7717809 (orient:-) max_ev_support = 1 # spliced_intron 7717718-7717809 (orient:-) max_ev_support = 2 scaffold_13 - intron 7717718-7717809 asmbl_9903,asmbl_9904,asmbl_9905 scaffold_13 - retained_intron 7717718-7717809 asmbl_9906 // Retained and Spliced Intron # retained_intron 7719414-7719504 (orient:-) max_ev_support = 1 # spliced_intron 7719414-7719504 (orient:-) max_ev_support = 3 scaffold_13 - intron 7719414-7719504 asmbl_9903,asmbl_9904 scaffold_13 - retained_intron 7719414-7719504 asmbl_9907 // Retained and Spliced Intron # retained_intron 7935604-7935878 (orient:-) max_ev_support = 2 # spliced_intron 7935604-7935878 (orient:-) max_ev_support = 2 scaffold_13 - intron 7935604-7935878 asmbl_9913,asmbl_9915,asmbl_9916,asmbl_9917 scaffold_13 - retained_intron 7935604-7935878 asmbl_9914,asmbl_9918,asmbl_9919 // Retained and Spliced Intron # retained_intron 7936040-7936337 (orient:-) max_ev_support = 1 # spliced_intron 7936040-7936337 (orient:-) max_ev_support = 2 scaffold_13 - intron 7936040-7936337 asmbl_9913,asmbl_9914,asmbl_9916,asmbl_9917 scaffold_13 - retained_intron 7936040-7936337 asmbl_9915,asmbl_9918,asmbl_9919 // Retained and Spliced Intron # retained_intron 7935012-7935207 (orient:-) max_ev_support = 1 # spliced_intron 7935012-7935207 (orient:-) max_ev_support = 2 scaffold_13 - intron 7935012-7935207 asmbl_9913,asmbl_9914,asmbl_9915,asmbl_9919 scaffold_13 - retained_intron 7935012-7935207 asmbl_9916,asmbl_9917,asmbl_9918 // Retained and Spliced Intron # retained_intron 7934786-7934861 (orient:-) max_ev_support = 1 # spliced_intron 7934786-7934861 (orient:-) max_ev_support = 2 scaffold_13 - intron 7934786-7934861 asmbl_9913,asmbl_9914,asmbl_9915,asmbl_9916,asmbl_9919 scaffold_13 - retained_intron 7934786-7934861 asmbl_9917,asmbl_9918 // Retained and Spliced Intron # retained_intron 7935394-7935495 (orient:-) max_ev_support = 1 # spliced_intron 7935394-7935495 (orient:-) max_ev_support = 2 scaffold_13 - intron 7935394-7935495 asmbl_9913,asmbl_9914,asmbl_9915,asmbl_9916,asmbl_9917,asmbl_9918 scaffold_13 - retained_intron 7935394-7935495 asmbl_9919 // Retained and Spliced Intron # retained_intron 7965217-7965352 (orient:-) max_ev_support = 1 # spliced_intron 7965217-7965352 (orient:-) max_ev_support = 2 scaffold_13 - intron 7965217-7965352 asmbl_9923 scaffold_13 - retained_intron 7965217-7965352 asmbl_9924 // Retained and Spliced Intron # retained_intron 7991437-7991929 (orient:-) max_ev_support = 3 # spliced_intron 7991437-7991929 (orient:-) max_ev_support = 4 scaffold_13 - intron 7991437-7991929 asmbl_9926 scaffold_13 - retained_intron 7991437-7991929 asmbl_9927,asmbl_9928 // Retained and Spliced Intron # retained_intron 8022246-8022334 (orient:-) max_ev_support = 2 # spliced_intron 8022246-8022334 (orient:-) max_ev_support = 1 scaffold_13 - intron 8022246-8022334 asmbl_9934,asmbl_9935 scaffold_13 - retained_intron 8022246-8022334 asmbl_9933 // Retained and Spliced Intron # retained_intron 8163692-8164029 (orient:-) max_ev_support = 1 # spliced_intron 8163692-8164029 (orient:-) max_ev_support = 1 scaffold_13 - intron 8163692-8164029 asmbl_9942,asmbl_9943 scaffold_13 - retained_intron 8163692-8164029 asmbl_9941 // Retained and Spliced Intron # retained_intron 8166668-8166859 (orient:-) max_ev_support = 1 # spliced_intron 8166668-8166859 (orient:-) max_ev_support = 1 scaffold_13 - intron 8166668-8166859 asmbl_9943 scaffold_13 - retained_intron 8166668-8166859 asmbl_9942 // Retained and Spliced Intron # retained_intron 8235692-8236213 (orient:-) max_ev_support = 1 # spliced_intron 8235692-8236213 (orient:-) max_ev_support = 2 scaffold_13 - intron 8235692-8236213 asmbl_9958,asmbl_9960,asmbl_9961 scaffold_13 - retained_intron 8235692-8236213 asmbl_9959 // Retained and Spliced Intron # retained_intron 8237557-8237860 (orient:-) max_ev_support = 1 # spliced_intron 8237557-8237860 (orient:-) max_ev_support = 2 scaffold_13 - intron 8237557-8237860 asmbl_9958,asmbl_9959 scaffold_13 - retained_intron 8237557-8237860 asmbl_9961 // Retained and Spliced Intron # retained_intron 8237956-8238073 (orient:-) max_ev_support = 1 # spliced_intron 8237956-8238073 (orient:-) max_ev_support = 2 scaffold_13 - intron 8237956-8238073 asmbl_9958,asmbl_9959 scaffold_13 - retained_intron 8237956-8238073 asmbl_9961 // Retained and Spliced Intron # retained_intron 8715359-8715468 (orient:-) max_ev_support = 2 # spliced_intron 8715359-8715468 (orient:-) max_ev_support = 2 scaffold_13 - intron 8715359-8715468 asmbl_9969 scaffold_13 - retained_intron 8715359-8715468 asmbl_9968 // Exon Skipping and Retention # skipped_exon 8809211-8810964 (orient:-) max_ev_support = 1 # retained_exon 8810472-8810521 (orient:-) max_ev_support = 2 scaffold_13 - retained_exons 8810472-8810521 asmbl_9980,asmbl_9983,asmbl_9985 scaffold_13 - intron_skips_exon 8809211-8810964 asmbl_9984 // Exon Skipping and Retention # skipped_exon 8805240-8806347 (orient:-) max_ev_support = 1 # retained_exon 8805849-8805902 (orient:-) max_ev_support = 1 scaffold_13 - retained_exons 8805849-8805902 asmbl_9983,asmbl_9984,asmbl_9985 scaffold_13 - intron_skips_exon 8805240-8806347 asmbl_9986 // Retained and Spliced Intron # retained_intron 8831245-8831460 (orient:-) max_ev_support = 2 # spliced_intron 8831245-8831460 (orient:-) max_ev_support = 2 scaffold_13 - intron 8831245-8831460 asmbl_9993,asmbl_9994 scaffold_13 - retained_intron 8831245-8831460 asmbl_9991 // Retained and Spliced Intron # retained_intron 8831597-8831757 (orient:-) max_ev_support = 2 # spliced_intron 8831597-8831757 (orient:-) max_ev_support = 2 scaffold_13 - intron 8831597-8831757 asmbl_9994 scaffold_13 - retained_intron 8831597-8831757 asmbl_9991,asmbl_9993 // Retained and Spliced Intron # retained_intron 8951830-8951935 (orient:-) max_ev_support = 1 # spliced_intron 8951830-8951935 (orient:-) max_ev_support = 2 scaffold_13 - intron 8951830-8951935 asmbl_10002,asmbl_10003 scaffold_13 - retained_intron 8951830-8951935 asmbl_10004 // Retained and Spliced Intron # retained_intron 8952103-8952193 (orient:-) max_ev_support = 1 # spliced_intron 8952103-8952193 (orient:-) max_ev_support = 2 scaffold_13 - intron 8952103-8952193 asmbl_10002,asmbl_10003 scaffold_13 - retained_intron 8952103-8952193 asmbl_10004 // Exon Skipping and Retention # skipped_exon 9180594-9180908 (orient:-) max_ev_support = 2 # retained_exon 9180704-9180801 (orient:-) max_ev_support = 2 scaffold_13 - retained_exons 9180704-9180801 asmbl_10006 scaffold_13 - intron_skips_exon 9180594-9180908 asmbl_10007 // Retained and Spliced Intron # retained_intron 9535986-9536192 (orient:-) max_ev_support = 2 # spliced_intron 9535986-9536192 (orient:-) max_ev_support = 1 scaffold_13 - intron 9535986-9536192 asmbl_10033 scaffold_13 - retained_intron 9535986-9536192 asmbl_10031,asmbl_10032 // Retained and Spliced Intron # retained_intron 9535986-9536300 (orient:-) max_ev_support = 2 # spliced_intron 9535986-9536300 (orient:-) max_ev_support = 2 scaffold_13 - intron 9535986-9536300 asmbl_10030,asmbl_10034 scaffold_13 - retained_intron 9535986-9536300 asmbl_10031,asmbl_10032 // Exon Skipping and Retention # skipped_exon 9552494-9553613 (orient:-) max_ev_support = 2 # retained_exon 9553262-9553299 (orient:-) max_ev_support = 1 scaffold_13 - retained_exons 9553262-9553299 asmbl_10036 scaffold_13 - intron_skips_exon 9552494-9553613 asmbl_10035 // Retained and Spliced Intron # retained_intron 9896483-9896567 (orient:-) max_ev_support = 1 # spliced_intron 9896483-9896567 (orient:-) max_ev_support = 2 scaffold_13 - intron 9896483-9896567 asmbl_10043 scaffold_13 - retained_intron 9896483-9896567 asmbl_10044 // Retained and Spliced Intron # retained_intron 9997163-9997360 (orient:-) max_ev_support = 2 # spliced_intron 9997163-9997360 (orient:-) max_ev_support = 2 scaffold_13 - intron 9997163-9997360 asmbl_10047 scaffold_13 - retained_intron 9997163-9997360 asmbl_10048 // Retained and Spliced Intron # retained_intron 10226230-10226249 (orient:-) max_ev_support = 1 # spliced_intron 10226230-10226249 (orient:-) max_ev_support = 1 scaffold_13 - intron 10226230-10226249 asmbl_10053 scaffold_13 - retained_intron 10226230-10226249 asmbl_10054,asmbl_10055,asmbl_10056 // Retained and Spliced Intron # retained_intron 10609363-10610784 (orient:-) max_ev_support = 5 # spliced_intron 10609363-10610784 (orient:-) max_ev_support = 2 scaffold_13 - intron 10609363-10610784 asmbl_10060 scaffold_13 - retained_intron 10609363-10610784 asmbl_10059 // Exon Skipping and Retention # skipped_exon 11376844-11379297 (orient:-) max_ev_support = 1 # retained_exon 11377478-11377534 (orient:-) max_ev_support = 2 scaffold_13 - retained_exons 11377478-11377534 asmbl_10080,asmbl_10082,asmbl_10084,asmbl_10086,asmbl_10088,asmbl_10089 scaffold_13 - intron_skips_exon 11376844-11379297 asmbl_10087,asmbl_10090 // Exon Skipping and Retention # skipped_exon 11379416-11382289 (orient:-) max_ev_support = 2 # retained_exon 11381832-11381855 (orient:-) max_ev_support = 2 scaffold_13 - retained_exons 11381832-11381855 asmbl_10082 scaffold_13 - intron_skips_exon 11379416-11382289 asmbl_10086,asmbl_10090 // Exon Skipping and Retention # skipped_exon 11379478-11382289 (orient:-) max_ev_support = 1 # retained_exon 11381832-11381855 (orient:-) max_ev_support = 2 scaffold_13 - retained_exons 11381832-11381855 asmbl_10082 scaffold_13 - intron_skips_exon 11379478-11382289 asmbl_10087,asmbl_10088 // Exon Skipping and Retention # skipped_exon 11379416-11381831 (orient:-) max_ev_support = 2 # retained_exon 11380238-11380872 (orient:-) max_ev_support = 2 scaffold_13 - retained_exons 11380238-11380872 asmbl_10084 scaffold_13 - intron_skips_exon 11379416-11381831 asmbl_10082 // Exon Skipping and Retention # skipped_exon 12460703-12461376 (orient:-) max_ev_support = 1 # retained_exon 12460893-12460942 (orient:-) max_ev_support = 2 scaffold_13 - retained_exons 12460893-12460942 asmbl_10136,asmbl_10137 scaffold_13 - intron_skips_exon 12460703-12461376 asmbl_10138 // Retained and Spliced Intron # retained_intron 14015268-14015390 (orient:-) max_ev_support = 1 # spliced_intron 14015268-14015390 (orient:-) max_ev_support = 2 scaffold_13 - intron 14015268-14015390 asmbl_10167 scaffold_13 - retained_intron 14015268-14015390 asmbl_10168 // Exon Skipping and Retention # skipped_exon 14561036-14563619 (orient:-) max_ev_support = 2 # retained_exon 14561660-14561718 (orient:-) max_ev_support = 2 scaffold_13 - retained_exons 14561660-14561718 asmbl_10197 scaffold_13 - intron_skips_exon 14561036-14563619 asmbl_10195 // Exon Skipping and Retention # skipped_exon 14561036-14563633 (orient:-) max_ev_support = 2 # retained_exon 14561660-14561718 (orient:-) max_ev_support = 2 scaffold_13 - retained_exons 14561660-14561718 asmbl_10197 scaffold_13 - intron_skips_exon 14561036-14563633 asmbl_10198 // Exon Skipping and Retention # skipped_exon 14561036-14563633 (orient:-) max_ev_support = 2 # retained_exon 14561660-14563480 (orient:-) max_ev_support = 1 scaffold_13 - retained_exons 14561660-14561718,14563424-14563480 asmbl_10199 scaffold_13 - intron_skips_exon 14561036-14563633 asmbl_10198 // Exon Skipping and Retention # skipped_exon 14561719-14563633 (orient:-) max_ev_support = 2 # retained_exon 14563424-14563480 (orient:-) max_ev_support = 1 scaffold_13 - retained_exons 14563424-14563480 asmbl_10199 scaffold_13 - intron_skips_exon 14561719-14563633 asmbl_10197 // Retained and Spliced Intron # retained_intron 14982062-14982116 (orient:-) max_ev_support = 1 # spliced_intron 14982062-14982116 (orient:-) max_ev_support = 1 scaffold_13 - intron 14982062-14982116 asmbl_10220 scaffold_13 - retained_intron 14982062-14982116 asmbl_10219 // Exon Skipping and Retention # skipped_exon 15037437-15039366 (orient:-) max_ev_support = 2 # retained_exon 15037855-15037979 (orient:-) max_ev_support = 2 scaffold_13 - retained_exons 15037855-15037979 asmbl_10223 scaffold_13 - intron_skips_exon 15037437-15039366 asmbl_10222 // Retained and Spliced Intron # retained_intron 15244277-15244789 (orient:-) max_ev_support = 1 # spliced_intron 15244277-15244789 (orient:-) max_ev_support = 3 scaffold_13 - intron 15244277-15244789 asmbl_10233 scaffold_13 - retained_intron 15244277-15244789 asmbl_10234 // Retained and Spliced Intron # retained_intron 16006876-16007020 (orient:-) max_ev_support = 2 # spliced_intron 16006876-16007020 (orient:-) max_ev_support = 1 scaffold_13 - intron 16006876-16007020 asmbl_10258 scaffold_13 - retained_intron 16006876-16007020 asmbl_10259 // Retained and Spliced Intron # retained_intron 16326282-16327028 (orient:-) max_ev_support = 2 # spliced_intron 16326282-16327028 (orient:-) max_ev_support = 2 scaffold_13 - intron 16326282-16327028 asmbl_10291 scaffold_13 - retained_intron 16326282-16327028 asmbl_10290,asmbl_10292 // Retained and Spliced Intron # retained_intron 16460477-16460808 (orient:-) max_ev_support = 2 # spliced_intron 16460477-16460808 (orient:-) max_ev_support = 3 scaffold_13 - intron 16460477-16460808 asmbl_10300,asmbl_10301,asmbl_10303,asmbl_10305 scaffold_13 - retained_intron 16460477-16460808 asmbl_10302 // Retained and Spliced Intron # retained_intron 16460036-16460303 (orient:-) max_ev_support = 2 # spliced_intron 16460036-16460303 (orient:-) max_ev_support = 2 scaffold_13 - intron 16460036-16460303 asmbl_10302 scaffold_13 - retained_intron 16460036-16460303 asmbl_10303 // Retained and Spliced Intron # retained_intron 16460036-16460320 (orient:-) max_ev_support = 2 # spliced_intron 16460036-16460320 (orient:-) max_ev_support = 3 scaffold_13 - intron 16460036-16460320 asmbl_10300 scaffold_13 - retained_intron 16460036-16460320 asmbl_10303 // Retained and Spliced Intron # retained_intron 16460036-16460350 (orient:-) max_ev_support = 2 # spliced_intron 16460036-16460350 (orient:-) max_ev_support = 3 scaffold_13 - intron 16460036-16460350 asmbl_10301 scaffold_13 - retained_intron 16460036-16460350 asmbl_10303 // Retained and Spliced Intron # retained_intron 16460089-16460350 (orient:-) max_ev_support = 2 # spliced_intron 16460089-16460350 (orient:-) max_ev_support = 1 scaffold_13 - intron 16460089-16460350 asmbl_10304,asmbl_10305 scaffold_13 - retained_intron 16460089-16460350 asmbl_10303 // Retained and Spliced Intron # retained_intron 4803-5026 (orient:+) max_ev_support = 3 # spliced_intron 4803-5026 (orient:+) max_ev_support = 2 scaffold_13 + intron 4803-5026 asmbl_10452 scaffold_13 + retained_intron 4803-5026 asmbl_10448,asmbl_10449,asmbl_10450,asmbl_10451,asmbl_10455 // Retained and Spliced Intron # retained_intron 4803-5031 (orient:+) max_ev_support = 3 # spliced_intron 4803-5031 (orient:+) max_ev_support = 2 scaffold_13 + intron 4803-5031 asmbl_10453 scaffold_13 + retained_intron 4803-5031 asmbl_10448,asmbl_10449,asmbl_10450,asmbl_10451,asmbl_10455 // Retained and Spliced Intron # retained_intron 5136-5411 (orient:+) max_ev_support = 3 # spliced_intron 5136-5411 (orient:+) max_ev_support = 3 scaffold_13 + intron 5136-5411 asmbl_10449,asmbl_10452 scaffold_13 + retained_intron 5136-5411 asmbl_10448,asmbl_10450,asmbl_10451,asmbl_10455 // Retained and Spliced Intron # retained_intron 4351-4448 (orient:+) max_ev_support = 2 # spliced_intron 4351-4448 (orient:+) max_ev_support = 3 scaffold_13 + intron 4351-4448 asmbl_10448,asmbl_10449,asmbl_10450 scaffold_13 + retained_intron 4351-4448 asmbl_10455 // Retained and Spliced Intron # retained_intron 87947-88104 (orient:+) max_ev_support = 4 # spliced_intron 87947-88104 (orient:+) max_ev_support = 1 scaffold_13 + intron 87947-88104 asmbl_10459,asmbl_10460 scaffold_13 + retained_intron 87947-88104 asmbl_10458 // Retained and Spliced Intron # retained_intron 88373-88517 (orient:+) max_ev_support = 1 # spliced_intron 88373-88517 (orient:+) max_ev_support = 2 scaffold_13 + intron 88373-88517 asmbl_10458,asmbl_10459 scaffold_13 + retained_intron 88373-88517 asmbl_10460 // Retained and Spliced Intron # retained_intron 220491-221239 (orient:+) max_ev_support = 1 # spliced_intron 220491-221239 (orient:+) max_ev_support = 2 scaffold_13 + intron 220491-221239 asmbl_10461 scaffold_13 + retained_intron 220491-221239 asmbl_10463,asmbl_10464 // Retained and Spliced Intron # retained_intron 222006-222122 (orient:+) max_ev_support = 1 # spliced_intron 222006-222122 (orient:+) max_ev_support = 2 scaffold_13 + intron 222006-222122 asmbl_10461,asmbl_10464 scaffold_13 + retained_intron 222006-222122 asmbl_10463 // Retained and Spliced Intron # retained_intron 221295-221368 (orient:+) max_ev_support = 1 # spliced_intron 221295-221368 (orient:+) max_ev_support = 2 scaffold_13 + intron 221295-221368 asmbl_10461,asmbl_10463 scaffold_13 + retained_intron 221295-221368 asmbl_10464 // Retained and Spliced Intron # retained_intron 272420-275404 (orient:+) max_ev_support = 2 # spliced_intron 272420-275404 (orient:+) max_ev_support = 2 scaffold_13 + intron 272420-275404 asmbl_10465 scaffold_13 + retained_intron 272420-275404 asmbl_10468,asmbl_10472 // Retained and Spliced Intron # retained_intron 274732-275404 (orient:+) max_ev_support = 2 # spliced_intron 274732-275404 (orient:+) max_ev_support = 2 scaffold_13 + intron 274732-275404 asmbl_10467 scaffold_13 + retained_intron 274732-275404 asmbl_10468,asmbl_10472 // Retained and Spliced Intron # retained_intron 278905-279237 (orient:+) max_ev_support = 2 # spliced_intron 278905-279237 (orient:+) max_ev_support = 2 scaffold_13 + intron 278905-279237 asmbl_10465,asmbl_10467,asmbl_10468,asmbl_10473 scaffold_13 + retained_intron 278905-279237 asmbl_10471 // Retained and Spliced Intron # retained_intron 356960-357391 (orient:+) max_ev_support = 2 # spliced_intron 356960-357391 (orient:+) max_ev_support = 3 scaffold_13 + intron 356960-357391 asmbl_10476,asmbl_10479 scaffold_13 + retained_intron 356960-357391 asmbl_10478 // Exon Skipping and Retention # skipped_exon 517905-520155 (orient:+) max_ev_support = 3 # retained_exon 519725-519848 (orient:+) max_ev_support = 3 scaffold_13 + retained_exons 519725-519848 asmbl_10484,asmbl_10492 scaffold_13 + intron_skips_exon 517905-520155 asmbl_10485 // Retained and Spliced Intron # retained_intron 517905-518333 (orient:+) max_ev_support = 2 # spliced_intron 517905-518333 (orient:+) max_ev_support = 1 scaffold_13 + intron 517905-518333 asmbl_10488,asmbl_10490 scaffold_13 + retained_intron 517905-518333 asmbl_10487 // Retained and Spliced Intron # retained_intron 517905-518487 (orient:+) max_ev_support = 2 # spliced_intron 517905-518487 (orient:+) max_ev_support = 2 scaffold_13 + intron 517905-518487 asmbl_10486,asmbl_10489 scaffold_13 + retained_intron 517905-518487 asmbl_10487 // Retained and Spliced Intron # retained_intron 517905-519724 (orient:+) max_ev_support = 2 # spliced_intron 517905-519724 (orient:+) max_ev_support = 3 scaffold_13 + intron 517905-519724 asmbl_10484,asmbl_10492 scaffold_13 + retained_intron 517905-519724 asmbl_10487 // Retained and Spliced Intron # retained_intron 517905-520155 (orient:+) max_ev_support = 2 # spliced_intron 517905-520155 (orient:+) max_ev_support = 3 scaffold_13 + intron 517905-520155 asmbl_10485 scaffold_13 + retained_intron 517905-520155 asmbl_10487 // Retained and Spliced Intron # retained_intron 518381-518487 (orient:+) max_ev_support = 2 # spliced_intron 518381-518487 (orient:+) max_ev_support = 1 scaffold_13 + intron 518381-518487 asmbl_10488,asmbl_10490 scaffold_13 + retained_intron 518381-518487 asmbl_10487,asmbl_10493 // Retained and Spliced Intron # retained_intron 519849-520155 (orient:+) max_ev_support = 2 # spliced_intron 519849-520155 (orient:+) max_ev_support = 3 scaffold_13 + intron 519849-520155 asmbl_10484,asmbl_10486,asmbl_10488,asmbl_10490,asmbl_10492 scaffold_13 + retained_intron 519849-520155 asmbl_10487,asmbl_10489,asmbl_10493 // Exon Skipping and Retention # skipped_exon 517905-519724 (orient:+) max_ev_support = 3 # retained_exon 518334-518380 (orient:+) max_ev_support = 1 scaffold_13 + retained_exons 518334-518380 asmbl_10488,asmbl_10490 scaffold_13 + intron_skips_exon 517905-519724 asmbl_10484,asmbl_10492 // Exon Skipping and Retention # skipped_exon 517905-518487 (orient:+) max_ev_support = 2 # retained_exon 518334-518380 (orient:+) max_ev_support = 1 scaffold_13 + retained_exons 518334-518380 asmbl_10488,asmbl_10490 scaffold_13 + intron_skips_exon 517905-518487 asmbl_10486,asmbl_10489 // Retained and Spliced Intron # retained_intron 738856-739000 (orient:+) max_ev_support = 2 # spliced_intron 738856-739000 (orient:+) max_ev_support = 1 scaffold_13 + intron 738856-739000 asmbl_10516 scaffold_13 + retained_intron 738856-739000 asmbl_10513 // Retained and Spliced Intron # retained_intron 738856-739027 (orient:+) max_ev_support = 2 # spliced_intron 738856-739027 (orient:+) max_ev_support = 2 scaffold_13 + intron 738856-739027 asmbl_10514 scaffold_13 + retained_intron 738856-739027 asmbl_10513 // Retained and Spliced Intron # retained_intron 1013360-1013456 (orient:+) max_ev_support = 3 # spliced_intron 1013360-1013456 (orient:+) max_ev_support = 1 scaffold_13 + intron 1013360-1013456 asmbl_10520 scaffold_13 + retained_intron 1013360-1013456 asmbl_10519 // Retained and Spliced Intron # retained_intron 1238835-1239623 (orient:+) max_ev_support = 6 # spliced_intron 1238835-1239623 (orient:+) max_ev_support = 3 scaffold_13 + intron 1238835-1239623 asmbl_10546,asmbl_10550,asmbl_10551,asmbl_10552,asmbl_10553,asmbl_10556 scaffold_13 + retained_intron 1238835-1239623 asmbl_10545,asmbl_10547,asmbl_10548 // Retained and Spliced Intron # retained_intron 1229434-1229825 (orient:+) max_ev_support = 5 # spliced_intron 1229434-1229825 (orient:+) max_ev_support = 1 scaffold_13 + intron 1229434-1229825 asmbl_10551 scaffold_13 + retained_intron 1229434-1229825 asmbl_10546,asmbl_10549 // Retained and Spliced Intron # retained_intron 1230177-1230306 (orient:+) max_ev_support = 3 # spliced_intron 1230177-1230306 (orient:+) max_ev_support = 1 scaffold_13 + intron 1230177-1230306 asmbl_10549 scaffold_13 + retained_intron 1230177-1230306 asmbl_10546,asmbl_10551,asmbl_10555 // Retained and Spliced Intron # retained_intron 1238377-1238489 (orient:+) max_ev_support = 2 # spliced_intron 1238377-1238489 (orient:+) max_ev_support = 1 scaffold_13 + intron 1238377-1238489 asmbl_10548 scaffold_13 + retained_intron 1238377-1238489 asmbl_10552 // Retained and Spliced Intron # retained_intron 1238377-1238503 (orient:+) max_ev_support = 2 # spliced_intron 1238377-1238503 (orient:+) max_ev_support = 3 scaffold_13 + intron 1238377-1238503 asmbl_10546,asmbl_10547,asmbl_10550,asmbl_10551,asmbl_10553,asmbl_10556 scaffold_13 + retained_intron 1238377-1238503 asmbl_10552 // Retained and Spliced Intron # retained_intron 1238200-1238338 (orient:+) max_ev_support = 2 # spliced_intron 1238200-1238338 (orient:+) max_ev_support = 3 scaffold_13 + intron 1238200-1238338 asmbl_10546,asmbl_10547,asmbl_10548,asmbl_10550,asmbl_10551,asmbl_10556 scaffold_13 + retained_intron 1238200-1238338 asmbl_10553 // Retained and Spliced Intron # retained_intron 1532474-1532709 (orient:+) max_ev_support = 2 # spliced_intron 1532474-1532709 (orient:+) max_ev_support = 3 scaffold_13 + intron 1532474-1532709 asmbl_10565,asmbl_10567 scaffold_13 + retained_intron 1532474-1532709 asmbl_10566 // Retained and Spliced Intron # retained_intron 2295238-2295321 (orient:+) max_ev_support = 1 # spliced_intron 2295238-2295321 (orient:+) max_ev_support = 2 scaffold_13 + intron 2295238-2295321 asmbl_10588,asmbl_10590 scaffold_13 + retained_intron 2295238-2295321 asmbl_10593 // Retained and Spliced Intron # retained_intron 2337673-2338404 (orient:+) max_ev_support = 3 # spliced_intron 2337673-2338404 (orient:+) max_ev_support = 1 scaffold_13 + intron 2337673-2338404 asmbl_10607 scaffold_13 + retained_intron 2337673-2338404 asmbl_10596,asmbl_10597 // Retained and Spliced Intron # retained_intron 2338672-2339178 (orient:+) max_ev_support = 1 # spliced_intron 2338672-2339178 (orient:+) max_ev_support = 2 scaffold_13 + intron 2338672-2339178 asmbl_10597,asmbl_10598,asmbl_10599,asmbl_10604,asmbl_10605,asmbl_10607 scaffold_13 + retained_intron 2338672-2339178 asmbl_10596 // Retained and Spliced Intron # retained_intron 2339458-2339876 (orient:+) max_ev_support = 1 # spliced_intron 2339458-2339876 (orient:+) max_ev_support = 1 scaffold_13 + intron 2339458-2339876 asmbl_10597,asmbl_10598,asmbl_10599,asmbl_10604,asmbl_10605 scaffold_13 + retained_intron 2339458-2339876 asmbl_10596,asmbl_10607 // Retained and Spliced Intron # retained_intron 2340135-2340365 (orient:+) max_ev_support = 1 # spliced_intron 2340135-2340365 (orient:+) max_ev_support = 1 scaffold_13 + intron 2340135-2340365 asmbl_10596,asmbl_10598,asmbl_10599,asmbl_10604,asmbl_10605 scaffold_13 + retained_intron 2340135-2340365 asmbl_10597,asmbl_10607 // Retained and Spliced Intron # retained_intron 2340633-2341002 (orient:+) max_ev_support = 1 # spliced_intron 2340633-2341002 (orient:+) max_ev_support = 1 scaffold_13 + intron 2340633-2341002 asmbl_10598,asmbl_10604,asmbl_10605 scaffold_13 + retained_intron 2340633-2341002 asmbl_10597 // Exon Skipping and Retention # skipped_exon 2322274-2325011 (orient:+) max_ev_support = 1 # retained_exon 2324402-2324668 (orient:+) max_ev_support = 1 scaffold_13 + retained_exons 2324402-2324668 asmbl_10598,asmbl_10599,asmbl_10604,asmbl_10605,asmbl_10610,asmbl_10611 scaffold_13 + intron_skips_exon 2322274-2325011 asmbl_10609 // Retained and Spliced Intron # retained_intron 2321236-2321329 (orient:+) max_ev_support = 1 # spliced_intron 2321236-2321329 (orient:+) max_ev_support = 1 scaffold_13 + intron 2321236-2321329 asmbl_10598,asmbl_10599,asmbl_10604,asmbl_10605,asmbl_10610,asmbl_10611 scaffold_13 + retained_intron 2321236-2321329 asmbl_10609 // Retained and Spliced Intron # retained_intron 2334729-2334832 (orient:+) max_ev_support = 1 # spliced_intron 2334729-2334832 (orient:+) max_ev_support = 2 scaffold_13 + intron 2334729-2334832 asmbl_10599,asmbl_10605,asmbl_10608 scaffold_13 + retained_intron 2334729-2334832 asmbl_10610 // Retained and Spliced Intron # retained_intron 2334729-2334862 (orient:+) max_ev_support = 1 # spliced_intron 2334729-2334862 (orient:+) max_ev_support = 2 scaffold_13 + intron 2334729-2334862 asmbl_10598,asmbl_10604,asmbl_10611 scaffold_13 + retained_intron 2334729-2334862 asmbl_10610 // Retained and Spliced Intron # retained_intron 2506963-2507489 (orient:+) max_ev_support = 3 # spliced_intron 2506963-2507489 (orient:+) max_ev_support = 3 scaffold_13 + intron 2506963-2507489 asmbl_10619 scaffold_13 + retained_intron 2506963-2507489 asmbl_10621,asmbl_10622 // Retained and Spliced Intron # retained_intron 2507240-2507489 (orient:+) max_ev_support = 3 # spliced_intron 2507240-2507489 (orient:+) max_ev_support = 3 scaffold_13 + intron 2507240-2507489 asmbl_10620 scaffold_13 + retained_intron 2507240-2507489 asmbl_10621,asmbl_10622 // Retained and Spliced Intron # retained_intron 2507577-2507742 (orient:+) max_ev_support = 2 # spliced_intron 2507577-2507742 (orient:+) max_ev_support = 3 scaffold_13 + intron 2507577-2507742 asmbl_10619,asmbl_10620,asmbl_10621 scaffold_13 + retained_intron 2507577-2507742 asmbl_10622 // Retained and Spliced Intron # retained_intron 2507878-2508092 (orient:+) max_ev_support = 2 # spliced_intron 2507878-2508092 (orient:+) max_ev_support = 3 scaffold_13 + intron 2507878-2508092 asmbl_10619,asmbl_10620,asmbl_10621 scaffold_13 + retained_intron 2507878-2508092 asmbl_10622 // Retained and Spliced Intron # retained_intron 2568046-2569763 (orient:+) max_ev_support = 1 # spliced_intron 2568046-2569763 (orient:+) max_ev_support = 3 scaffold_13 + intron 2568046-2569763 asmbl_10624,asmbl_10625 scaffold_13 + retained_intron 2568046-2569763 asmbl_10623,asmbl_10626,asmbl_10627,asmbl_10628,asmbl_10629 // Retained and Spliced Intron # retained_intron 2569792-2570318 (orient:+) max_ev_support = 5 # spliced_intron 2569792-2570318 (orient:+) max_ev_support = 3 scaffold_13 + intron 2569792-2570318 asmbl_10624,asmbl_10625,asmbl_10626,asmbl_10627,asmbl_10628,asmbl_10629 scaffold_13 + retained_intron 2569792-2570318 asmbl_10623 // Retained and Spliced Intron # retained_intron 2570469-2570603 (orient:+) max_ev_support = 3 # spliced_intron 2570469-2570603 (orient:+) max_ev_support = 3 scaffold_13 + intron 2570469-2570603 asmbl_10624,asmbl_10625,asmbl_10626,asmbl_10628,asmbl_10629 scaffold_13 + retained_intron 2570469-2570603 asmbl_10623,asmbl_10627 // Retained and Spliced Intron # retained_intron 2570778-2570949 (orient:+) max_ev_support = 3 # spliced_intron 2570778-2570949 (orient:+) max_ev_support = 3 scaffold_13 + intron 2570778-2570949 asmbl_10624,asmbl_10625,asmbl_10626,asmbl_10628,asmbl_10629 scaffold_13 + retained_intron 2570778-2570949 asmbl_10623,asmbl_10627 // Retained and Spliced Intron # retained_intron 2571028-2571173 (orient:+) max_ev_support = 3 # spliced_intron 2571028-2571173 (orient:+) max_ev_support = 3 scaffold_13 + intron 2571028-2571173 asmbl_10624,asmbl_10625,asmbl_10627,asmbl_10628,asmbl_10629 scaffold_13 + retained_intron 2571028-2571173 asmbl_10623,asmbl_10626 // Retained and Spliced Intron # retained_intron 2571207-2571311 (orient:+) max_ev_support = 3 # spliced_intron 2571207-2571311 (orient:+) max_ev_support = 3 scaffold_13 + intron 2571207-2571311 asmbl_10624,asmbl_10629 scaffold_13 + retained_intron 2571207-2571311 asmbl_10623,asmbl_10625,asmbl_10626,asmbl_10627,asmbl_10628 // Retained and Spliced Intron # retained_intron 2636936-2637161 (orient:+) max_ev_support = 3 # spliced_intron 2636936-2637161 (orient:+) max_ev_support = 3 scaffold_13 + intron 2636936-2637161 asmbl_10631 scaffold_13 + retained_intron 2636936-2637161 asmbl_10630 // Retained and Spliced Intron # retained_intron 2637243-2637508 (orient:+) max_ev_support = 3 # spliced_intron 2637243-2637508 (orient:+) max_ev_support = 3 scaffold_13 + intron 2637243-2637508 asmbl_10631 scaffold_13 + retained_intron 2637243-2637508 asmbl_10630 // Exon Skipping and Retention # skipped_exon 2969960-2972943 (orient:+) max_ev_support = 2 # retained_exon 2972401-2972535 (orient:+) max_ev_support = 2 scaffold_13 + retained_exons 2972401-2972535 asmbl_10643 scaffold_13 + intron_skips_exon 2969960-2972943 asmbl_10642 // Retained and Spliced Intron # retained_intron 3264232-3264348 (orient:+) max_ev_support = 1 # spliced_intron 3264232-3264348 (orient:+) max_ev_support = 2 scaffold_13 + intron 3264232-3264348 asmbl_10675 scaffold_13 + retained_intron 3264232-3264348 asmbl_10676 // Retained and Spliced Intron # retained_intron 3371276-3371709 (orient:+) max_ev_support = 2 # spliced_intron 3371276-3371709 (orient:+) max_ev_support = 2 scaffold_13 + intron 3371276-3371709 asmbl_10685 scaffold_13 + retained_intron 3371276-3371709 asmbl_10686 // Retained and Spliced Intron # retained_intron 3429569-3429691 (orient:+) max_ev_support = 3 # spliced_intron 3429569-3429691 (orient:+) max_ev_support = 3 scaffold_13 + intron 3429569-3429691 asmbl_10690,asmbl_10691 scaffold_13 + retained_intron 3429569-3429691 asmbl_10689 // Retained and Spliced Intron # retained_intron 3430642-3430833 (orient:+) max_ev_support = 3 # spliced_intron 3430642-3430833 (orient:+) max_ev_support = 2 scaffold_13 + intron 3430642-3430833 asmbl_10691 scaffold_13 + retained_intron 3430642-3430833 asmbl_10689,asmbl_10690,asmbl_10692 // Retained and Spliced Intron # retained_intron 3430216-3430310 (orient:+) max_ev_support = 2 # spliced_intron 3430216-3430310 (orient:+) max_ev_support = 3 scaffold_13 + intron 3430216-3430310 asmbl_10689,asmbl_10690,asmbl_10691 scaffold_13 + retained_intron 3430216-3430310 asmbl_10692 // Retained and Spliced Intron # retained_intron 3530974-3531292 (orient:+) max_ev_support = 1 # spliced_intron 3530974-3531292 (orient:+) max_ev_support = 2 scaffold_13 + intron 3530974-3531292 asmbl_10701,asmbl_10703,asmbl_10704,asmbl_10705,asmbl_10706 scaffold_13 + retained_intron 3530974-3531292 asmbl_10702 // Retained and Spliced Intron # retained_intron 3529047-3529149 (orient:+) max_ev_support = 1 # spliced_intron 3529047-3529149 (orient:+) max_ev_support = 2 scaffold_13 + intron 3529047-3529149 asmbl_10701,asmbl_10702,asmbl_10703,asmbl_10705 scaffold_13 + retained_intron 3529047-3529149 asmbl_10704 // Retained and Spliced Intron # retained_intron 3529936-3530025 (orient:+) max_ev_support = 1 # spliced_intron 3529936-3530025 (orient:+) max_ev_support = 2 scaffold_13 + intron 3529936-3530025 asmbl_10701,asmbl_10702,asmbl_10703,asmbl_10704,asmbl_10705 scaffold_13 + retained_intron 3529936-3530025 asmbl_10706 // Retained and Spliced Intron # retained_intron 3570908-3571205 (orient:+) max_ev_support = 3 # spliced_intron 3570908-3571205 (orient:+) max_ev_support = 2 scaffold_13 + intron 3570908-3571205 asmbl_10712,asmbl_10715 scaffold_13 + retained_intron 3570908-3571205 asmbl_10710,asmbl_10711 // Retained and Spliced Intron # retained_intron 3568630-3568756 (orient:+) max_ev_support = 1 # spliced_intron 3568630-3568756 (orient:+) max_ev_support = 2 scaffold_13 + intron 3568630-3568756 asmbl_10711,asmbl_10712 scaffold_13 + retained_intron 3568630-3568756 asmbl_10714 // Retained and Spliced Intron # retained_intron 3735623-3735769 (orient:+) max_ev_support = 2 # spliced_intron 3735623-3735769 (orient:+) max_ev_support = 3 scaffold_13 + intron 3735623-3735769 asmbl_10731,asmbl_10732,asmbl_10733,asmbl_10734,asmbl_10736,asmbl_10737 scaffold_13 + retained_intron 3735623-3735769 asmbl_10730 // Retained and Spliced Intron # retained_intron 3734461-3734554 (orient:+) max_ev_support = 3 # spliced_intron 3734461-3734554 (orient:+) max_ev_support = 2 scaffold_13 + intron 3734461-3734554 asmbl_10733,asmbl_10734,asmbl_10736,asmbl_10737 scaffold_13 + retained_intron 3734461-3734554 asmbl_10732 // Retained and Spliced Intron # retained_intron 3734461-3734631 (orient:+) max_ev_support = 3 # spliced_intron 3734461-3734631 (orient:+) max_ev_support = 2 scaffold_13 + intron 3734461-3734631 asmbl_10730,asmbl_10731 scaffold_13 + retained_intron 3734461-3734631 asmbl_10732 // Retained and Spliced Intron # retained_intron 3736104-3736197 (orient:+) max_ev_support = 2 # spliced_intron 3736104-3736197 (orient:+) max_ev_support = 3 scaffold_13 + intron 3736104-3736197 asmbl_10730,asmbl_10731,asmbl_10732,asmbl_10733,asmbl_10734,asmbl_10736,asmbl_10737,asmbl_10738 scaffold_13 + retained_intron 3736104-3736197 asmbl_10735 // Retained and Spliced Intron # retained_intron 3733773-3733964 (orient:+) max_ev_support = 1 # spliced_intron 3733773-3733964 (orient:+) max_ev_support = 2 scaffold_13 + intron 3733773-3733964 asmbl_10734 scaffold_13 + retained_intron 3733773-3733964 asmbl_10736,asmbl_10737 // Retained and Spliced Intron # retained_intron 3733822-3733964 (orient:+) max_ev_support = 1 # spliced_intron 3733822-3733964 (orient:+) max_ev_support = 2 scaffold_13 + intron 3733822-3733964 asmbl_10730,asmbl_10731,asmbl_10733 scaffold_13 + retained_intron 3733822-3733964 asmbl_10736,asmbl_10737 // Retained and Spliced Intron # retained_intron 3734866-3734962 (orient:+) max_ev_support = 1 # spliced_intron 3734866-3734962 (orient:+) max_ev_support = 3 scaffold_13 + intron 3734866-3734962 asmbl_10730,asmbl_10731,asmbl_10732,asmbl_10733,asmbl_10734,asmbl_10736 scaffold_13 + retained_intron 3734866-3734962 asmbl_10737 // Retained and Spliced Intron # retained_intron 3735854-3736052 (orient:+) max_ev_support = 1 # spliced_intron 3735854-3736052 (orient:+) max_ev_support = 3 scaffold_13 + intron 3735854-3736052 asmbl_10730,asmbl_10731,asmbl_10732,asmbl_10733,asmbl_10734,asmbl_10736,asmbl_10737 scaffold_13 + retained_intron 3735854-3736052 asmbl_10738 // Retained and Spliced Intron # retained_intron 3747652-3747803 (orient:+) max_ev_support = 2 # spliced_intron 3747652-3747803 (orient:+) max_ev_support = 2 scaffold_13 + intron 3747652-3747803 asmbl_10741,asmbl_10743,asmbl_10744 scaffold_13 + retained_intron 3747652-3747803 asmbl_10742 // Retained and Spliced Intron # retained_intron 4077097-4077213 (orient:+) max_ev_support = 3 # spliced_intron 4077097-4077213 (orient:+) max_ev_support = 1 scaffold_13 + intron 4077097-4077213 asmbl_10756 scaffold_13 + retained_intron 4077097-4077213 asmbl_10755 // Retained and Spliced Intron # retained_intron 4078795-4078887 (orient:+) max_ev_support = 1 # spliced_intron 4078795-4078887 (orient:+) max_ev_support = 2 scaffold_13 + intron 4078795-4078887 asmbl_10759 scaffold_13 + retained_intron 4078795-4078887 asmbl_10760 // Retained and Spliced Intron # retained_intron 4254874-4255488 (orient:+) max_ev_support = 3 # spliced_intron 4254874-4255488 (orient:+) max_ev_support = 2 scaffold_13 + intron 4254874-4255488 asmbl_10769 scaffold_13 + retained_intron 4254874-4255488 asmbl_10768 // Retained and Spliced Intron # retained_intron 4378784-4378885 (orient:+) max_ev_support = 2 # spliced_intron 4378784-4378885 (orient:+) max_ev_support = 1 scaffold_13 + intron 4378784-4378885 asmbl_10785,asmbl_10786,asmbl_10787,asmbl_10788,asmbl_10790 scaffold_13 + retained_intron 4378784-4378885 asmbl_10784 // Retained and Spliced Intron # retained_intron 4457825-4458511 (orient:+) max_ev_support = 5 # spliced_intron 4457825-4458511 (orient:+) max_ev_support = 2 scaffold_13 + intron 4457825-4458511 asmbl_10796 scaffold_13 + retained_intron 4457825-4458511 asmbl_10793,asmbl_10794 // Retained and Spliced Intron # retained_intron 4457825-4458799 (orient:+) max_ev_support = 5 # spliced_intron 4457825-4458799 (orient:+) max_ev_support = 2 scaffold_13 + intron 4457825-4458799 asmbl_10797 scaffold_13 + retained_intron 4457825-4458799 asmbl_10793 // Retained and Spliced Intron # retained_intron 4458561-4458799 (orient:+) max_ev_support = 3 # spliced_intron 4458561-4458799 (orient:+) max_ev_support = 2 scaffold_13 + intron 4458561-4458799 asmbl_10794,asmbl_10796,asmbl_10798 scaffold_13 + retained_intron 4458561-4458799 asmbl_10793 // Retained and Spliced Intron # retained_intron 4459134-4459215 (orient:+) max_ev_support = 2 # spliced_intron 4459134-4459215 (orient:+) max_ev_support = 2 scaffold_13 + intron 4459134-4459215 asmbl_10794,asmbl_10796,asmbl_10797 scaffold_13 + retained_intron 4459134-4459215 asmbl_10793,asmbl_10798,asmbl_10799 // Retained and Spliced Intron # retained_intron 4457659-4457733 (orient:+) max_ev_support = 2 # spliced_intron 4457659-4457733 (orient:+) max_ev_support = 3 scaffold_13 + intron 4457659-4457733 asmbl_10793,asmbl_10794,asmbl_10796,asmbl_10797 scaffold_13 + retained_intron 4457659-4457733 asmbl_10795 // Exon Skipping and Retention # skipped_exon 4457825-4458799 (orient:+) max_ev_support = 2 # retained_exon 4458512-4458560 (orient:+) max_ev_support = 2 scaffold_13 + retained_exons 4458512-4458560 asmbl_10796 scaffold_13 + intron_skips_exon 4457825-4458799 asmbl_10797 // Retained and Spliced Intron # retained_intron 4458969-4459061 (orient:+) max_ev_support = 2 # spliced_intron 4458969-4459061 (orient:+) max_ev_support = 3 scaffold_13 + intron 4458969-4459061 asmbl_10793,asmbl_10794,asmbl_10796,asmbl_10797 scaffold_13 + retained_intron 4458969-4459061 asmbl_10798 // Retained and Spliced Intron # retained_intron 4459323-4459424 (orient:+) max_ev_support = 2 # spliced_intron 4459323-4459424 (orient:+) max_ev_support = 2 scaffold_13 + intron 4459323-4459424 asmbl_10793,asmbl_10794,asmbl_10796,asmbl_10797,asmbl_10799 scaffold_13 + retained_intron 4459323-4459424 asmbl_10798 // Retained and Spliced Intron # retained_intron 4532541-4532619 (orient:+) max_ev_support = 3 # spliced_intron 4532541-4532619 (orient:+) max_ev_support = 3 scaffold_13 + intron 4532541-4532619 asmbl_10809 scaffold_13 + retained_intron 4532541-4532619 asmbl_10810 // Retained and Spliced Intron # retained_intron 4656102-4656354 (orient:+) max_ev_support = 1 # spliced_intron 4656102-4656354 (orient:+) max_ev_support = 2 scaffold_13 + intron 4656102-4656354 asmbl_10819,asmbl_10821 scaffold_13 + retained_intron 4656102-4656354 asmbl_10820,asmbl_10822 // Retained and Spliced Intron # retained_intron 5208212-5208649 (orient:+) max_ev_support = 2 # spliced_intron 5208212-5208649 (orient:+) max_ev_support = 3 scaffold_13 + intron 5208212-5208649 asmbl_10830 scaffold_13 + retained_intron 5208212-5208649 asmbl_10831 // Retained and Spliced Intron # retained_intron 5208212-5208652 (orient:+) max_ev_support = 2 # spliced_intron 5208212-5208652 (orient:+) max_ev_support = 1 scaffold_13 + intron 5208212-5208652 asmbl_10832 scaffold_13 + retained_intron 5208212-5208652 asmbl_10831 // Exon Skipping and Retention # skipped_exon 5334067-5336246 (orient:+) max_ev_support = 1 # retained_exon 5335012-5335101 (orient:+) max_ev_support = 2 scaffold_13 + retained_exons 5335012-5335101 asmbl_10837,asmbl_10840 scaffold_13 + intron_skips_exon 5334067-5336246 asmbl_10839,asmbl_10841 // Exon Skipping and Retention # skipped_exon 5389961-5391342 (orient:+) max_ev_support = 2 # retained_exon 5390824-5390840 (orient:+) max_ev_support = 1 scaffold_13 + retained_exons 5390824-5390840 asmbl_10848 scaffold_13 + intron_skips_exon 5389961-5391342 asmbl_10845 // Retained and Spliced Intron # retained_intron 5506761-5506941 (orient:+) max_ev_support = 3 # spliced_intron 5506761-5506941 (orient:+) max_ev_support = 3 scaffold_13 + intron 5506761-5506941 asmbl_10857 scaffold_13 + retained_intron 5506761-5506941 asmbl_10856,asmbl_10858 // Retained and Spliced Intron # retained_intron 5506444-5506736 (orient:+) max_ev_support = 3 # spliced_intron 5506444-5506736 (orient:+) max_ev_support = 3 scaffold_13 + intron 5506444-5506736 asmbl_10855,asmbl_10856,asmbl_10857 scaffold_13 + retained_intron 5506444-5506736 asmbl_10858 // Exon Skipping and Retention # skipped_exon 5804903-5806487 (orient:+) max_ev_support = 1 # retained_exon 5805415-5805510 (orient:+) max_ev_support = 1 scaffold_13 + retained_exons 5805415-5805510 asmbl_10898,asmbl_10899 scaffold_13 + intron_skips_exon 5804903-5806487 asmbl_10903 // Retained and Spliced Intron # retained_intron 5804903-5805414 (orient:+) max_ev_support = 1 # spliced_intron 5804903-5805414 (orient:+) max_ev_support = 1 scaffold_13 + intron 5804903-5805414 asmbl_10898,asmbl_10899 scaffold_13 + retained_intron 5804903-5805414 asmbl_10902 // Retained and Spliced Intron # retained_intron 5802919-5803440 (orient:+) max_ev_support = 1 # spliced_intron 5802919-5803440 (orient:+) max_ev_support = 1 scaffold_13 + intron 5802919-5803440 asmbl_10898,asmbl_10899,asmbl_10902 scaffold_13 + retained_intron 5802919-5803440 asmbl_10903 // Exon Skipping and Retention # skipped_exon 6290886-6293319 (orient:+) max_ev_support = 2 # retained_exon 6291541-6291693 (orient:+) max_ev_support = 2 scaffold_13 + retained_exons 6291541-6291693 asmbl_10917,asmbl_10922 scaffold_13 + intron_skips_exon 6290886-6293319 asmbl_10918,asmbl_10921 // Exon Skipping and Retention # skipped_exon 6291694-6294471 (orient:+) max_ev_support = 2 # retained_exon 6293320-6293472 (orient:+) max_ev_support = 2 scaffold_13 + retained_exons 6293320-6293472 asmbl_10918,asmbl_10921 scaffold_13 + intron_skips_exon 6291694-6294471 asmbl_10917,asmbl_10922 // Retained and Spliced Intron # retained_intron 6396106-6396423 (orient:+) max_ev_support = 3 # spliced_intron 6396106-6396423 (orient:+) max_ev_support = 2 scaffold_13 + intron 6396106-6396423 asmbl_10925,asmbl_10929 scaffold_13 + retained_intron 6396106-6396423 asmbl_10923,asmbl_10926,asmbl_10928 // Exon Skipping and Retention # skipped_exon 6396903-6397368 (orient:+) max_ev_support = 3 # retained_exon 6397184-6397232 (orient:+) max_ev_support = 3 scaffold_13 + retained_exons 6397184-6397232 asmbl_10923,asmbl_10925,asmbl_10926,asmbl_10930 scaffold_13 + intron_skips_exon 6396903-6397368 asmbl_10924,asmbl_10928,asmbl_10929 // Exon Skipping and Retention # skipped_exon 6396106-6396589 (orient:+) max_ev_support = 3 # retained_exon 6396424-6396467 (orient:+) max_ev_support = 2 scaffold_13 + retained_exons 6396424-6396467 asmbl_10925,asmbl_10929 scaffold_13 + intron_skips_exon 6396106-6396589 asmbl_10924,asmbl_10930 // Retained and Spliced Intron # retained_intron 6396106-6396589 (orient:+) max_ev_support = 2 # spliced_intron 6396106-6396589 (orient:+) max_ev_support = 3 scaffold_13 + intron 6396106-6396589 asmbl_10924,asmbl_10930 scaffold_13 + retained_intron 6396106-6396589 asmbl_10926,asmbl_10928 // Retained and Spliced Intron # retained_intron 6396468-6396589 (orient:+) max_ev_support = 2 # spliced_intron 6396468-6396589 (orient:+) max_ev_support = 3 scaffold_13 + intron 6396468-6396589 asmbl_10923,asmbl_10925,asmbl_10927,asmbl_10929 scaffold_13 + retained_intron 6396468-6396589 asmbl_10926,asmbl_10928 // Retained and Spliced Intron # retained_intron 6396903-6397183 (orient:+) max_ev_support = 2 # spliced_intron 6396903-6397183 (orient:+) max_ev_support = 3 scaffold_13 + intron 6396903-6397183 asmbl_10923,asmbl_10925,asmbl_10926,asmbl_10930 scaffold_13 + retained_intron 6396903-6397183 asmbl_10927 // Retained and Spliced Intron # retained_intron 6396903-6397368 (orient:+) max_ev_support = 2 # spliced_intron 6396903-6397368 (orient:+) max_ev_support = 3 scaffold_13 + intron 6396903-6397368 asmbl_10924,asmbl_10928,asmbl_10929 scaffold_13 + retained_intron 6396903-6397368 asmbl_10927 // Retained and Spliced Intron # retained_intron 6397233-6397368 (orient:+) max_ev_support = 2 # spliced_intron 6397233-6397368 (orient:+) max_ev_support = 3 scaffold_13 + intron 6397233-6397368 asmbl_10923,asmbl_10925,asmbl_10926,asmbl_10930 scaffold_13 + retained_intron 6397233-6397368 asmbl_10927 // Retained and Spliced Intron # retained_intron 6398067-6398296 (orient:+) max_ev_support = 1 # spliced_intron 6398067-6398296 (orient:+) max_ev_support = 3 scaffold_13 + intron 6398067-6398296 asmbl_10923,asmbl_10924,asmbl_10925,asmbl_10926,asmbl_10927,asmbl_10928,asmbl_10929,asmbl_10930 scaffold_13 + retained_intron 6398067-6398296 asmbl_10931 // Retained and Spliced Intron # retained_intron 6616931-6617079 (orient:+) max_ev_support = 2 # spliced_intron 6616931-6617079 (orient:+) max_ev_support = 1 scaffold_13 + intron 6616931-6617079 asmbl_10953 scaffold_13 + retained_intron 6616931-6617079 asmbl_10952,asmbl_10955 // Retained and Spliced Intron # retained_intron 6615541-6615731 (orient:+) max_ev_support = 1 # spliced_intron 6615541-6615731 (orient:+) max_ev_support = 2 scaffold_13 + intron 6615541-6615731 asmbl_10952,asmbl_10953 scaffold_13 + retained_intron 6615541-6615731 asmbl_10954 // Retained and Spliced Intron # retained_intron 6623425-6623614 (orient:+) max_ev_support = 2 # spliced_intron 6623425-6623614 (orient:+) max_ev_support = 2 scaffold_13 + intron 6623425-6623614 asmbl_10957,asmbl_10959 scaffold_13 + retained_intron 6623425-6623614 asmbl_10958 // Retained and Spliced Intron # retained_intron 6686158-6686374 (orient:+) max_ev_support = 1 # spliced_intron 6686158-6686374 (orient:+) max_ev_support = 3 scaffold_13 + intron 6686158-6686374 asmbl_10961 scaffold_13 + retained_intron 6686158-6686374 asmbl_10963 // Retained and Spliced Intron # retained_intron 6761797-6761991 (orient:+) max_ev_support = 3 # spliced_intron 6761797-6761991 (orient:+) max_ev_support = 1 scaffold_13 + intron 6761797-6761991 asmbl_10970,asmbl_10971 scaffold_13 + retained_intron 6761797-6761991 asmbl_10969,asmbl_10972 // Retained and Spliced Intron # retained_intron 6762160-6762916 (orient:+) max_ev_support = 3 # spliced_intron 6762160-6762916 (orient:+) max_ev_support = 1 scaffold_13 + intron 6762160-6762916 asmbl_10971 scaffold_13 + retained_intron 6762160-6762916 asmbl_10969,asmbl_10970,asmbl_10972 // Exon Skipping and Retention # skipped_exon 6803745-6804588 (orient:+) max_ev_support = 1 # retained_exon 6804014-6804145 (orient:+) max_ev_support = 2 scaffold_13 + retained_exons 6804014-6804145 asmbl_10975,asmbl_10979 scaffold_13 + intron_skips_exon 6803745-6804588 asmbl_10976,asmbl_10978 // Exon Skipping and Retention # skipped_exon 6885038-6885978 (orient:+) max_ev_support = 2 # retained_exon 6885661-6885747 (orient:+) max_ev_support = 2 scaffold_13 + retained_exons 6885661-6885747 asmbl_10992,asmbl_10994 scaffold_13 + intron_skips_exon 6885038-6885978 asmbl_10993 // Exon Skipping and Retention # skipped_exon 6884220-6885660 (orient:+) max_ev_support = 2 # retained_exon 6884888-6885037 (orient:+) max_ev_support = 2 scaffold_13 + retained_exons 6884888-6885037 asmbl_10993,asmbl_10994 scaffold_13 + intron_skips_exon 6884220-6885660 asmbl_10992 // Retained and Spliced Intron # retained_intron 7109446-7110796 (orient:+) max_ev_support = 3 # spliced_intron 7109446-7110796 (orient:+) max_ev_support = 1 scaffold_13 + intron 7109446-7110796 asmbl_11013 scaffold_13 + retained_intron 7109446-7110796 asmbl_11010,asmbl_11014 // Retained and Spliced Intron # retained_intron 7109506-7110796 (orient:+) max_ev_support = 3 # spliced_intron 7109506-7110796 (orient:+) max_ev_support = 2 scaffold_13 + intron 7109506-7110796 asmbl_11011 scaffold_13 + retained_intron 7109506-7110796 asmbl_11010,asmbl_11014 // Retained and Spliced Intron # retained_intron 7216203-7216365 (orient:+) max_ev_support = 1 # spliced_intron 7216203-7216365 (orient:+) max_ev_support = 2 scaffold_13 + intron 7216203-7216365 asmbl_11019,asmbl_11021,asmbl_11026,asmbl_11027 scaffold_13 + retained_intron 7216203-7216365 asmbl_11022,asmbl_11023,asmbl_11024,asmbl_11025 // Retained and Spliced Intron # retained_intron 7217234-7217677 (orient:+) max_ev_support = 1 # spliced_intron 7217234-7217677 (orient:+) max_ev_support = 2 scaffold_13 + intron 7217234-7217677 asmbl_11019,asmbl_11021,asmbl_11024,asmbl_11025,asmbl_11027 scaffold_13 + retained_intron 7217234-7217677 asmbl_11022,asmbl_11023,asmbl_11026 // Retained and Spliced Intron # retained_intron 7216462-7216557 (orient:+) max_ev_support = 1 # spliced_intron 7216462-7216557 (orient:+) max_ev_support = 2 scaffold_13 + intron 7216462-7216557 asmbl_11019,asmbl_11021,asmbl_11022,asmbl_11024,asmbl_11025,asmbl_11026,asmbl_11027 scaffold_13 + retained_intron 7216462-7216557 asmbl_11023 // Retained and Spliced Intron # retained_intron 7217965-7218245 (orient:+) max_ev_support = 1 # spliced_intron 7217965-7218245 (orient:+) max_ev_support = 1 scaffold_13 + intron 7217965-7218245 asmbl_11021 scaffold_13 + retained_intron 7217965-7218245 asmbl_11025,asmbl_11027 // Retained and Spliced Intron # retained_intron 7217965-7218248 (orient:+) max_ev_support = 1 # spliced_intron 7217965-7218248 (orient:+) max_ev_support = 1 scaffold_13 + intron 7217965-7218248 asmbl_11023 scaffold_13 + retained_intron 7217965-7218248 asmbl_11025,asmbl_11027 // Retained and Spliced Intron # retained_intron 7217965-7219584 (orient:+) max_ev_support = 1 # spliced_intron 7217965-7219584 (orient:+) max_ev_support = 2 scaffold_13 + intron 7217965-7219584 asmbl_11019,asmbl_11022,asmbl_11024,asmbl_11026 scaffold_13 + retained_intron 7217965-7219584 asmbl_11025,asmbl_11027 // Retained and Spliced Intron # retained_intron 7655418-7655568 (orient:+) max_ev_support = 3 # spliced_intron 7655418-7655568 (orient:+) max_ev_support = 2 scaffold_13 + intron 7655418-7655568 asmbl_11062,asmbl_11064,asmbl_11065,asmbl_11066 scaffold_13 + retained_intron 7655418-7655568 asmbl_11061 // Retained and Spliced Intron # retained_intron 7655940-7656087 (orient:+) max_ev_support = 1 # spliced_intron 7655940-7656087 (orient:+) max_ev_support = 2 scaffold_13 + intron 7655940-7656087 asmbl_11061,asmbl_11062,asmbl_11065,asmbl_11066 scaffold_13 + retained_intron 7655940-7656087 asmbl_11064 // Retained and Spliced Intron # retained_intron 7668097-7668467 (orient:+) max_ev_support = 3 # spliced_intron 7668097-7668467 (orient:+) max_ev_support = 1 scaffold_13 + intron 7668097-7668467 asmbl_11070 scaffold_13 + retained_intron 7668097-7668467 asmbl_11069 // Exon Skipping and Retention # skipped_exon 7907506-7907925 (orient:+) max_ev_support = 1 # retained_exon 7907698-7907775 (orient:+) max_ev_support = 3 scaffold_13 + retained_exons 7907698-7907775 asmbl_11080 scaffold_13 + intron_skips_exon 7907506-7907925 asmbl_11081 // Retained and Spliced Intron # retained_intron 8013982-8014196 (orient:+) max_ev_support = 2 # spliced_intron 8013982-8014196 (orient:+) max_ev_support = 2 scaffold_13 + intron 8013982-8014196 asmbl_11088,asmbl_11092,asmbl_11093 scaffold_13 + retained_intron 8013982-8014196 asmbl_11091 // Retained and Spliced Intron # retained_intron 8013555-8013678 (orient:+) max_ev_support = 1 # spliced_intron 8013555-8013678 (orient:+) max_ev_support = 2 scaffold_13 + intron 8013555-8013678 asmbl_11088,asmbl_11093 scaffold_13 + retained_intron 8013555-8013678 asmbl_11092 // Retained and Spliced Intron # retained_intron 8103489-8103578 (orient:+) max_ev_support = 1 # spliced_intron 8103489-8103578 (orient:+) max_ev_support = 2 scaffold_13 + intron 8103489-8103578 asmbl_11099 scaffold_13 + retained_intron 8103489-8103578 asmbl_11100 // Retained and Spliced Intron # retained_intron 8112220-8112754 (orient:+) max_ev_support = 3 # spliced_intron 8112220-8112754 (orient:+) max_ev_support = 2 scaffold_13 + intron 8112220-8112754 asmbl_11104 scaffold_13 + retained_intron 8112220-8112754 asmbl_11103 // Exon Skipping and Retention # skipped_exon 8348099-8348676 (orient:+) max_ev_support = 2 # retained_exon 8348306-8348586 (orient:+) max_ev_support = 2 scaffold_13 + retained_exons 8348306-8348396,8348536-8348586 asmbl_11123 scaffold_13 + intron_skips_exon 8348099-8348676 asmbl_11122 // Retained and Spliced Intron # retained_intron 8357971-8358153 (orient:+) max_ev_support = 4 # spliced_intron 8357971-8358153 (orient:+) max_ev_support = 1 scaffold_13 + intron 8357971-8358153 asmbl_11132 scaffold_13 + retained_intron 8357971-8358153 asmbl_11125,asmbl_11126,asmbl_11127,asmbl_11128,asmbl_11129,asmbl_11130,asmbl_11131 // Retained and Spliced Intron # retained_intron 8353056-8353540 (orient:+) max_ev_support = 1 # spliced_intron 8353056-8353540 (orient:+) max_ev_support = 1 scaffold_13 + intron 8353056-8353540 asmbl_11129 scaffold_13 + retained_intron 8353056-8353540 asmbl_11128 // Retained and Spliced Intron # retained_intron 8353056-8353594 (orient:+) max_ev_support = 1 # spliced_intron 8353056-8353594 (orient:+) max_ev_support = 2 scaffold_13 + intron 8353056-8353594 asmbl_11125,asmbl_11132 scaffold_13 + retained_intron 8353056-8353594 asmbl_11128 // Retained and Spliced Intron # retained_intron 8518137-8518344 (orient:+) max_ev_support = 1 # spliced_intron 8518137-8518344 (orient:+) max_ev_support = 2 scaffold_13 + intron 8518137-8518344 asmbl_11134 scaffold_13 + retained_intron 8518137-8518344 asmbl_11133 // Retained and Spliced Intron # retained_intron 8518420-8518604 (orient:+) max_ev_support = 3 # spliced_intron 8518420-8518604 (orient:+) max_ev_support = 2 scaffold_13 + intron 8518420-8518604 asmbl_11134 scaffold_13 + retained_intron 8518420-8518604 asmbl_11133 // Retained and Spliced Intron # retained_intron 8683729-8683824 (orient:+) max_ev_support = 3 # spliced_intron 8683729-8683824 (orient:+) max_ev_support = 2 scaffold_13 + intron 8683729-8683824 asmbl_11138 scaffold_13 + retained_intron 8683729-8683824 asmbl_11137 // Exon Skipping and Retention # skipped_exon 8699211-8700085 (orient:+) max_ev_support = 2 # retained_exon 8699291-8699329 (orient:+) max_ev_support = 2 scaffold_13 + retained_exons 8699291-8699329 asmbl_11140,asmbl_11142 scaffold_13 + intron_skips_exon 8699211-8700085 asmbl_11139 // Retained and Spliced Intron # retained_intron 8721343-8721448 (orient:+) max_ev_support = 3 # spliced_intron 8721343-8721448 (orient:+) max_ev_support = 3 scaffold_13 + intron 8721343-8721448 asmbl_11144 scaffold_13 + retained_intron 8721343-8721448 asmbl_11145 // Exon Skipping and Retention # skipped_exon 8909268-8912067 (orient:+) max_ev_support = 2 # retained_exon 8909678-8909835 (orient:+) max_ev_support = 3 scaffold_13 + retained_exons 8909678-8909835 asmbl_11156 scaffold_13 + intron_skips_exon 8909268-8912067 asmbl_11157 // Retained and Spliced Intron # retained_intron 8912349-8912432 (orient:+) max_ev_support = 3 # spliced_intron 8912349-8912432 (orient:+) max_ev_support = 4 scaffold_13 + intron 8912349-8912432 asmbl_11156,asmbl_11157,asmbl_11158 scaffold_13 + retained_intron 8912349-8912432 asmbl_11159 // Retained and Spliced Intron # retained_intron 8955171-8955239 (orient:+) max_ev_support = 2 # spliced_intron 8955171-8955239 (orient:+) max_ev_support = 2 scaffold_13 + intron 8955171-8955239 asmbl_11164,asmbl_11165,asmbl_11166,asmbl_11167 scaffold_13 + retained_intron 8955171-8955239 asmbl_11163 // Retained and Spliced Intron # retained_intron 8955171-8955244 (orient:+) max_ev_support = 2 # spliced_intron 8955171-8955244 (orient:+) max_ev_support = 1 scaffold_13 + intron 8955171-8955244 asmbl_11168 scaffold_13 + retained_intron 8955171-8955244 asmbl_11163 // Retained and Spliced Intron # retained_intron 8955354-8955451 (orient:+) max_ev_support = 1 # spliced_intron 8955354-8955451 (orient:+) max_ev_support = 2 scaffold_13 + intron 8955354-8955451 asmbl_11163,asmbl_11164,asmbl_11167,asmbl_11168 scaffold_13 + retained_intron 8955354-8955451 asmbl_11165,asmbl_11166 // Retained and Spliced Intron # retained_intron 9223165-9223239 (orient:+) max_ev_support = 2 # spliced_intron 9223165-9223239 (orient:+) max_ev_support = 1 scaffold_13 + intron 9223165-9223239 asmbl_11178 scaffold_13 + retained_intron 9223165-9223239 asmbl_11177 // Exon Skipping and Retention # skipped_exon 9237133-9239582 (orient:+) max_ev_support = 1 # retained_exon 9238672-9238827 (orient:+) max_ev_support = 2 scaffold_13 + retained_exons 9238672-9238827 asmbl_11181,asmbl_11182 scaffold_13 + intron_skips_exon 9237133-9239582 asmbl_11183 // Retained and Spliced Intron # retained_intron 9254392-9254501 (orient:+) max_ev_support = 1 # spliced_intron 9254392-9254501 (orient:+) max_ev_support = 2 scaffold_13 + intron 9254392-9254501 asmbl_11186 scaffold_13 + retained_intron 9254392-9254501 asmbl_11189 // Retained and Spliced Intron # retained_intron 9254576-9254748 (orient:+) max_ev_support = 1 # spliced_intron 9254576-9254748 (orient:+) max_ev_support = 2 scaffold_13 + intron 9254576-9254748 asmbl_11186 scaffold_13 + retained_intron 9254576-9254748 asmbl_11189 // Retained and Spliced Intron # retained_intron 9553953-9554101 (orient:+) max_ev_support = 3 # spliced_intron 9553953-9554101 (orient:+) max_ev_support = 2 scaffold_13 + intron 9553953-9554101 asmbl_11208 scaffold_13 + retained_intron 9553953-9554101 asmbl_11207 // Exon Skipping and Retention # skipped_exon 9558041-9558424 (orient:+) max_ev_support = 2 # retained_exon 9558209-9558300 (orient:+) max_ev_support = 2 scaffold_13 + retained_exons 9558209-9558300 asmbl_11210 scaffold_13 + intron_skips_exon 9558041-9558424 asmbl_11209 // Retained and Spliced Intron # retained_intron 9608243-9608361 (orient:+) max_ev_support = 1 # spliced_intron 9608243-9608361 (orient:+) max_ev_support = 4 scaffold_13 + intron 9608243-9608361 asmbl_11211,asmbl_11212 scaffold_13 + retained_intron 9608243-9608361 asmbl_11213 // Retained and Spliced Intron # retained_intron 9957806-9957985 (orient:+) max_ev_support = 2 # spliced_intron 9957806-9957985 (orient:+) max_ev_support = 1 scaffold_13 + intron 9957806-9957985 asmbl_11218 scaffold_13 + retained_intron 9957806-9957985 asmbl_11217 // Exon Skipping and Retention # skipped_exon 10433500-10435476 (orient:+) max_ev_support = 2 # retained_exon 10434518-10434625 (orient:+) max_ev_support = 2 scaffold_13 + retained_exons 10434518-10434625 asmbl_11239 scaffold_13 + intron_skips_exon 10433500-10435476 asmbl_11237,asmbl_11238,asmbl_11240 // Retained and Spliced Intron # retained_intron 11581870-11581964 (orient:+) max_ev_support = 1 # spliced_intron 11581870-11581964 (orient:+) max_ev_support = 2 scaffold_13 + intron 11581870-11581964 asmbl_11280,asmbl_11282,asmbl_11283 scaffold_13 + retained_intron 11581870-11581964 asmbl_11281 // Retained and Spliced Intron # retained_intron 11598971-11599668 (orient:+) max_ev_support = 2 # spliced_intron 11598971-11599668 (orient:+) max_ev_support = 1 scaffold_13 + intron 11598971-11599668 asmbl_11285,asmbl_11286,asmbl_11290,asmbl_11291,asmbl_11294,asmbl_11295 scaffold_13 + retained_intron 11598971-11599668 asmbl_11284 // Retained and Spliced Intron # retained_intron 11601123-11601382 (orient:+) max_ev_support = 1 # spliced_intron 11601123-11601382 (orient:+) max_ev_support = 1 scaffold_13 + intron 11601123-11601382 asmbl_11287,asmbl_11289,asmbl_11291,asmbl_11292,asmbl_11294,asmbl_11295 scaffold_13 + retained_intron 11601123-11601382 asmbl_11288,asmbl_11293,asmbl_11296,asmbl_11297,asmbl_11298 // Retained and Spliced Intron # retained_intron 11601420-11601630 (orient:+) max_ev_support = 1 # spliced_intron 11601420-11601630 (orient:+) max_ev_support = 1 scaffold_13 + intron 11601420-11601630 asmbl_11287,asmbl_11289,asmbl_11291,asmbl_11292,asmbl_11294,asmbl_11295,asmbl_11297 scaffold_13 + retained_intron 11601420-11601630 asmbl_11288,asmbl_11293,asmbl_11296,asmbl_11298 // Exon Skipping and Retention # skipped_exon 11585754-11588600 (orient:+) max_ev_support = 1 # retained_exon 11586717-11586913 (orient:+) max_ev_support = 1 scaffold_13 + retained_exons 11586717-11586913 asmbl_11289,asmbl_11290,asmbl_11291,asmbl_11298 scaffold_13 + intron_skips_exon 11585754-11588600 asmbl_11286 // Exon Skipping and Retention # skipped_exon 11585750-11588600 (orient:+) max_ev_support = 1 # retained_exon 11586717-11586913 (orient:+) max_ev_support = 1 scaffold_13 + retained_exons 11586717-11586913 asmbl_11289,asmbl_11290,asmbl_11291,asmbl_11298 scaffold_13 + intron_skips_exon 11585750-11588600 asmbl_11292,asmbl_11295,asmbl_11296,asmbl_11297 // Exon Skipping and Retention # skipped_exon 11598971-11600009 (orient:+) max_ev_support = 1 # retained_exon 11599669-11599743 (orient:+) max_ev_support = 1 scaffold_13 + retained_exons 11599669-11599743 asmbl_11291,asmbl_11294,asmbl_11295 scaffold_13 + intron_skips_exon 11598971-11600009 asmbl_11289,asmbl_11292,asmbl_11293,asmbl_11296,asmbl_11297,asmbl_11298 // Exon Skipping and Retention # skipped_exon 11585750-11588600 (orient:+) max_ev_support = 1 # retained_exon 11586690-11586913 (orient:+) max_ev_support = 1 scaffold_13 + retained_exons 11586690-11586913 asmbl_11293,asmbl_11294 scaffold_13 + intron_skips_exon 11585750-11588600 asmbl_11292,asmbl_11295,asmbl_11296,asmbl_11297 // Exon Skipping and Retention # skipped_exon 11615251-11616123 (orient:+) max_ev_support = 2 # retained_exon 11615375-11615516 (orient:+) max_ev_support = 2 scaffold_13 + retained_exons 11615375-11615516 asmbl_11301 scaffold_13 + intron_skips_exon 11615251-11616123 asmbl_11302 // Retained and Spliced Intron # retained_intron 12039370-12039399 (orient:+) max_ev_support = 1 # spliced_intron 12039370-12039399 (orient:+) max_ev_support = 1 scaffold_13 + intron 12039370-12039399 asmbl_11324 scaffold_13 + retained_intron 12039370-12039399 asmbl_11323 // Retained and Spliced Intron # retained_intron 12104495-12104907 (orient:+) max_ev_support = 3 # spliced_intron 12104495-12104907 (orient:+) max_ev_support = 3 scaffold_13 + intron 12104495-12104907 asmbl_11331,asmbl_11333 scaffold_13 + retained_intron 12104495-12104907 asmbl_11332 // Retained and Spliced Intron # retained_intron 12105019-12105196 (orient:+) max_ev_support = 1 # spliced_intron 12105019-12105196 (orient:+) max_ev_support = 3 scaffold_13 + intron 12105019-12105196 asmbl_11331 scaffold_13 + retained_intron 12105019-12105196 asmbl_11332 // Retained and Spliced Intron # retained_intron 12253907-12254148 (orient:+) max_ev_support = 3 # spliced_intron 12253907-12254148 (orient:+) max_ev_support = 3 scaffold_13 + intron 12253907-12254148 asmbl_11348,asmbl_11349,asmbl_11352,asmbl_11353,asmbl_11355 scaffold_13 + retained_intron 12253907-12254148 asmbl_11347 // Exon Skipping and Retention # skipped_exon 12251472-12253769 (orient:+) max_ev_support = 2 # retained_exon 12253535-12253612 (orient:+) max_ev_support = 3 scaffold_13 + retained_exons 12253535-12253612 asmbl_11348 scaffold_13 + intron_skips_exon 12251472-12253769 asmbl_11347,asmbl_11349 // Exon Skipping and Retention # skipped_exon 12251472-12253713 (orient:+) max_ev_support = 1 # retained_exon 12253535-12253612 (orient:+) max_ev_support = 3 scaffold_13 + retained_exons 12253535-12253612 asmbl_11348 scaffold_13 + intron_skips_exon 12251472-12253713 asmbl_11353 // Retained and Spliced Intron # retained_intron 12253613-12253769 (orient:+) max_ev_support = 1 # spliced_intron 12253613-12253769 (orient:+) max_ev_support = 3 scaffold_13 + intron 12253613-12253769 asmbl_11348 scaffold_13 + retained_intron 12253613-12253769 asmbl_11352,asmbl_11355 // Retained and Spliced Intron # retained_intron 13570331-13570402 (orient:+) max_ev_support = 2 # spliced_intron 13570331-13570402 (orient:+) max_ev_support = 1 scaffold_13 + intron 13570331-13570402 asmbl_11396 scaffold_13 + retained_intron 13570331-13570402 asmbl_11395 // Retained and Spliced Intron # retained_intron 13868019-13868068 (orient:+) max_ev_support = 2 # spliced_intron 13868019-13868068 (orient:+) max_ev_support = 1 scaffold_13 + intron 13868019-13868068 asmbl_11412 scaffold_13 + retained_intron 13868019-13868068 asmbl_11411 // Retained and Spliced Intron # retained_intron 13972082-13972131 (orient:+) max_ev_support = 2 # spliced_intron 13972082-13972131 (orient:+) max_ev_support = 1 scaffold_13 + intron 13972082-13972131 asmbl_11417 scaffold_13 + retained_intron 13972082-13972131 asmbl_11413 // Exon Skipping and Retention # skipped_exon 13972028-13973853 (orient:+) max_ev_support = 1 # retained_exon 13973710-13973738 (orient:+) max_ev_support = 1 scaffold_13 + retained_exons 13973710-13973738 asmbl_11415,asmbl_11416 scaffold_13 + intron_skips_exon 13972028-13973853 asmbl_11414 // Exon Skipping and Retention # skipped_exon 13973928-13974878 (orient:+) max_ev_support = 1 # retained_exon 13974489-13974623 (orient:+) max_ev_support = 1 scaffold_13 + retained_exons 13974489-13974623 asmbl_11416 scaffold_13 + intron_skips_exon 13973928-13974878 asmbl_11415 // Retained and Spliced Intron # retained_intron 13973739-13973853 (orient:+) max_ev_support = 1 # spliced_intron 13973739-13973853 (orient:+) max_ev_support = 1 scaffold_13 + intron 13973739-13973853 asmbl_11415,asmbl_11416 scaffold_13 + retained_intron 13973739-13973853 asmbl_11418 // Retained and Spliced Intron # retained_intron 14174926-14175211 (orient:+) max_ev_support = 4 # spliced_intron 14174926-14175211 (orient:+) max_ev_support = 3 scaffold_13 + intron 14174926-14175211 asmbl_11432,asmbl_11434 scaffold_13 + retained_intron 14174926-14175211 asmbl_11431,asmbl_11433 // Retained and Spliced Intron # retained_intron 14174926-14175940 (orient:+) max_ev_support = 6 # spliced_intron 14174926-14175940 (orient:+) max_ev_support = 2 scaffold_13 + intron 14174926-14175940 asmbl_11435 scaffold_13 + retained_intron 14174926-14175940 asmbl_11431,asmbl_11433 // Retained and Spliced Intron # retained_intron 14716696-14716771 (orient:+) max_ev_support = 1 # spliced_intron 14716696-14716771 (orient:+) max_ev_support = 1 scaffold_13 + intron 14716696-14716771 asmbl_11469 scaffold_13 + retained_intron 14716696-14716771 asmbl_11470 // Retained and Spliced Intron # retained_intron 14964496-14964531 (orient:+) max_ev_support = 2 # spliced_intron 14964496-14964531 (orient:+) max_ev_support = 1 scaffold_13 + intron 14964496-14964531 asmbl_11479 scaffold_13 + retained_intron 14964496-14964531 asmbl_11478 // Exon Skipping and Retention # skipped_exon 15100579-15102303 (orient:+) max_ev_support = 2 # retained_exon 15101050-15101105 (orient:+) max_ev_support = 1 scaffold_13 + retained_exons 15101050-15101105 asmbl_11486 scaffold_13 + intron_skips_exon 15100579-15102303 asmbl_11485 // Exon Skipping and Retention # skipped_exon 15362462-15364730 (orient:+) max_ev_support = 2 # retained_exon 15363483-15363547 (orient:+) max_ev_support = 2 scaffold_13 + retained_exons 15363483-15363547 asmbl_11494 scaffold_13 + intron_skips_exon 15362462-15364730 asmbl_11493 // Exon Skipping and Retention # skipped_exon 15511199-15512431 (orient:+) max_ev_support = 1 # retained_exon 15512103-15512242 (orient:+) max_ev_support = 4 scaffold_13 + retained_exons 15512103-15512242 asmbl_11512 scaffold_13 + intron_skips_exon 15511199-15512431 asmbl_11513 // Exon Skipping and Retention # skipped_exon 15510436-15512102 (orient:+) max_ev_support = 4 # retained_exon 15511059-15511198 (orient:+) max_ev_support = 1 scaffold_13 + retained_exons 15511059-15511198 asmbl_11513 scaffold_13 + intron_skips_exon 15510436-15512102 asmbl_11512 // Exon Skipping and Retention # skipped_exon 15635633-15637556 (orient:+) max_ev_support = 1 # retained_exon 15636036-15636176 (orient:+) max_ev_support = 1 scaffold_13 + retained_exons 15636036-15636176 asmbl_11521 scaffold_13 + intron_skips_exon 15635633-15637556 asmbl_11522 // Exon Skipping and Retention # skipped_exon 15636177-15637930 (orient:+) max_ev_support = 1 # retained_exon 15637557-15637697 (orient:+) max_ev_support = 1 scaffold_13 + retained_exons 15637557-15637697 asmbl_11522 scaffold_13 + intron_skips_exon 15636177-15637930 asmbl_11521 // Retained and Spliced Intron # retained_intron 15672345-15672386 (orient:+) max_ev_support = 1 # spliced_intron 15672345-15672386 (orient:+) max_ev_support = 1 scaffold_13 + intron 15672345-15672386 asmbl_11529 scaffold_13 + retained_intron 15672345-15672386 asmbl_11525,asmbl_11526,asmbl_11527,asmbl_11530 // Retained and Spliced Intron # retained_intron 15672407-15672426 (orient:+) max_ev_support = 1 # spliced_intron 15672407-15672426 (orient:+) max_ev_support = 1 scaffold_13 + intron 15672407-15672426 asmbl_11526 scaffold_13 + retained_intron 15672407-15672426 asmbl_11525 // Exon Skipping and Retention # skipped_exon 15672345-15672546 (orient:+) max_ev_support = 1 # retained_exon 15672427-15672466 (orient:+) max_ev_support = 1 scaffold_13 + retained_exons 15672427-15672466 asmbl_11526 scaffold_13 + intron_skips_exon 15672345-15672546 asmbl_11528 // Exon Skipping and Retention # skipped_exon 15672407-15672506 (orient:+) max_ev_support = 1 # retained_exon 15672427-15672466 (orient:+) max_ev_support = 1 scaffold_13 + retained_exons 15672427-15672466 asmbl_11526 scaffold_13 + intron_skips_exon 15672407-15672506 asmbl_11530 // Retained and Spliced Intron # retained_intron 15751759-15752058 (orient:+) max_ev_support = 4 # spliced_intron 15751759-15752058 (orient:+) max_ev_support = 1 scaffold_13 + intron 15751759-15752058 asmbl_11539 scaffold_13 + retained_intron 15751759-15752058 asmbl_11537 // Retained and Spliced Intron # retained_intron 15814218-15814405 (orient:+) max_ev_support = 1 # spliced_intron 15814218-15814405 (orient:+) max_ev_support = 1 scaffold_13 + intron 15814218-15814405 asmbl_11543 scaffold_13 + retained_intron 15814218-15814405 asmbl_11542 // Retained and Spliced Intron # retained_intron 16048795-16048914 (orient:+) max_ev_support = 1 # spliced_intron 16048795-16048914 (orient:+) max_ev_support = 1 scaffold_13 + intron 16048795-16048914 asmbl_11547 scaffold_13 + retained_intron 16048795-16048914 asmbl_11548 // Retained and Spliced Intron # retained_intron 16048875-16048914 (orient:+) max_ev_support = 1 # spliced_intron 16048875-16048914 (orient:+) max_ev_support = 1 scaffold_13 + intron 16048875-16048914 asmbl_11549 scaffold_13 + retained_intron 16048875-16048914 asmbl_11548 // Retained and Spliced Intron # retained_intron 16048875-16048994 (orient:+) max_ev_support = 1 # spliced_intron 16048875-16048994 (orient:+) max_ev_support = 1 scaffold_13 + intron 16048875-16048994 asmbl_11546 scaffold_13 + retained_intron 16048875-16048994 asmbl_11548 // Retained and Spliced Intron # retained_intron 16138003-16138117 (orient:+) max_ev_support = 2 # spliced_intron 16138003-16138117 (orient:+) max_ev_support = 1 scaffold_13 + intron 16138003-16138117 asmbl_11556 scaffold_13 + retained_intron 16138003-16138117 asmbl_11554 // Retained and Spliced Intron # retained_intron 16138073-16138097 (orient:+) max_ev_support = 1 # spliced_intron 16138073-16138097 (orient:+) max_ev_support = 1 scaffold_13 + intron 16138073-16138097 asmbl_11555 scaffold_13 + retained_intron 16138073-16138097 asmbl_11554 // Retained and Spliced Intron # retained_intron 16250502-16250639 (orient:+) max_ev_support = 2 # spliced_intron 16250502-16250639 (orient:+) max_ev_support = 2 scaffold_13 + intron 16250502-16250639 asmbl_11567 scaffold_13 + retained_intron 16250502-16250639 asmbl_11566 // Retained and Spliced Intron # retained_intron 16250502-16250688 (orient:+) max_ev_support = 2 # spliced_intron 16250502-16250688 (orient:+) max_ev_support = 3 scaffold_13 + intron 16250502-16250688 asmbl_11565 scaffold_13 + retained_intron 16250502-16250688 asmbl_11566 // Retained and Spliced Intron # retained_intron 16284302-16284439 (orient:+) max_ev_support = 3 # spliced_intron 16284302-16284439 (orient:+) max_ev_support = 2 scaffold_13 + intron 16284302-16284439 asmbl_11569 scaffold_13 + retained_intron 16284302-16284439 asmbl_11568 // Retained and Spliced Intron # retained_intron 16434082-16434150 (orient:+) max_ev_support = 2 # spliced_intron 16434082-16434150 (orient:+) max_ev_support = 1 scaffold_13 + intron 16434082-16434150 asmbl_11576 scaffold_13 + retained_intron 16434082-16434150 asmbl_11574,asmbl_11575 // Retained and Spliced Intron # retained_intron 16437382-16437484 (orient:+) max_ev_support = 2 # spliced_intron 16437382-16437484 (orient:+) max_ev_support = 1 scaffold_13 + intron 16437382-16437484 asmbl_11582 scaffold_13 + retained_intron 16437382-16437484 asmbl_11579 // Retained and Spliced Intron # retained_intron 16436550-16436943 (orient:+) max_ev_support = 1 # spliced_intron 16436550-16436943 (orient:+) max_ev_support = 3 scaffold_13 + intron 16436550-16436943 asmbl_11577,asmbl_11578 scaffold_13 + retained_intron 16436550-16436943 asmbl_11581,asmbl_11582 // Exon Skipping and Retention # skipped_exon 16437030-16437484 (orient:+) max_ev_support = 3 # retained_exon 16437298-16437381 (orient:+) max_ev_support = 1 scaffold_13 + retained_exons 16437298-16437381 asmbl_11582 scaffold_13 + intron_skips_exon 16437030-16437484 asmbl_11577,asmbl_11581 // Retained and Spliced Intron # retained_intron 16515276-16515326 (orient:+) max_ev_support = 2 # spliced_intron 16515276-16515326 (orient:+) max_ev_support = 1 scaffold_13 + intron 16515276-16515326 asmbl_11584 scaffold_13 + retained_intron 16515276-16515326 asmbl_11583 // Retained and Spliced Intron # retained_intron 2091-2231 (orient:+) max_ev_support = 1 # spliced_intron 2091-2231 (orient:+) max_ev_support = 1 scaffold_1325 + intron 2091-2231 asmbl_11712 scaffold_1325 + retained_intron 2091-2231 asmbl_11713,asmbl_11714 // Retained and Spliced Intron # retained_intron 1914-2398 (orient:+) max_ev_support = 1 # spliced_intron 1914-2398 (orient:+) max_ev_support = 1 scaffold_1352 + intron 1914-2398 asmbl_11722 scaffold_1352 + retained_intron 1914-2398 asmbl_11723 // Retained and Spliced Intron # retained_intron 8309-8646 (orient:-) max_ev_support = 3 # spliced_intron 8309-8646 (orient:-) max_ev_support = 1 scaffold_137 - intron 8309-8646 asmbl_11734 scaffold_137 - retained_intron 8309-8646 asmbl_11733 // Retained and Spliced Intron # retained_intron 405059-405204 (orient:+) max_ev_support = 3 # spliced_intron 405059-405204 (orient:+) max_ev_support = 3 scaffold_14 + intron 405059-405204 asmbl_11748,asmbl_11749,asmbl_11751 scaffold_14 + retained_intron 405059-405204 asmbl_11747 // Retained and Spliced Intron # retained_intron 405268-405492 (orient:+) max_ev_support = 3 # spliced_intron 405268-405492 (orient:+) max_ev_support = 2 scaffold_14 + intron 405268-405492 asmbl_11749,asmbl_11756 scaffold_14 + retained_intron 405268-405492 asmbl_11747,asmbl_11751 // Retained and Spliced Intron # retained_intron 405268-405642 (orient:+) max_ev_support = 3 # spliced_intron 405268-405642 (orient:+) max_ev_support = 2 scaffold_14 + intron 405268-405642 asmbl_11748,asmbl_11750,asmbl_11753 scaffold_14 + retained_intron 405268-405642 asmbl_11747,asmbl_11751 // Exon Skipping and Retention # skipped_exon 404659-405204 (orient:+) max_ev_support = 2 # retained_exon 404838-405058 (orient:+) max_ev_support = 4 scaffold_14 + retained_exons 404838-405058 asmbl_11748,asmbl_11749,asmbl_11751 scaffold_14 + intron_skips_exon 404659-405204 asmbl_11750,asmbl_11753,asmbl_11756 // Retained and Spliced Intron # retained_intron 399142-399238 (orient:+) max_ev_support = 1 # spliced_intron 399142-399238 (orient:+) max_ev_support = 3 scaffold_14 + intron 399142-399238 asmbl_11747,asmbl_11748,asmbl_11750 scaffold_14 + retained_intron 399142-399238 asmbl_11749,asmbl_11751 // Retained and Spliced Intron # retained_intron 399142-399371 (orient:+) max_ev_support = 1 # spliced_intron 399142-399371 (orient:+) max_ev_support = 2 scaffold_14 + intron 399142-399371 asmbl_11753,asmbl_11754,asmbl_11755 scaffold_14 + retained_intron 399142-399371 asmbl_11749,asmbl_11751 // Retained and Spliced Intron # retained_intron 583074-583722 (orient:+) max_ev_support = 3 # spliced_intron 583074-583722 (orient:+) max_ev_support = 2 scaffold_14 + intron 583074-583722 asmbl_11769 scaffold_14 + retained_intron 583074-583722 asmbl_11767,asmbl_11773 // Retained and Spliced Intron # retained_intron 583074-583762 (orient:+) max_ev_support = 3 # spliced_intron 583074-583762 (orient:+) max_ev_support = 1 scaffold_14 + intron 583074-583762 asmbl_11772 scaffold_14 + retained_intron 583074-583762 asmbl_11767,asmbl_11773 // Retained and Spliced Intron # retained_intron 583521-583652 (orient:+) max_ev_support = 3 # spliced_intron 583521-583652 (orient:+) max_ev_support = 1 scaffold_14 + intron 583521-583652 asmbl_11771 scaffold_14 + retained_intron 583521-583652 asmbl_11767,asmbl_11773 // Exon Skipping and Retention # skipped_exon 868522-868972 (orient:+) max_ev_support = 1 # retained_exon 868708-868738 (orient:+) max_ev_support = 2 scaffold_14 + retained_exons 868708-868738 asmbl_11774 scaffold_14 + intron_skips_exon 868522-868972 asmbl_11775,asmbl_11776,asmbl_11777,asmbl_11778 // Exon Skipping and Retention # skipped_exon 869132-871148 (orient:+) max_ev_support = 1 # retained_exon 870397-870450 (orient:+) max_ev_support = 1 scaffold_14 + retained_exons 870397-870450 asmbl_11775,asmbl_11777,asmbl_11778 scaffold_14 + intron_skips_exon 869132-871148 asmbl_11776 // Retained and Spliced Intron # retained_intron 1067639-1067750 (orient:+) max_ev_support = 2 # spliced_intron 1067639-1067750 (orient:+) max_ev_support = 1 scaffold_14 + intron 1067639-1067750 asmbl_11792,asmbl_11795,asmbl_11796,asmbl_11797 scaffold_14 + retained_intron 1067639-1067750 asmbl_11788,asmbl_11791,asmbl_11793,asmbl_11794,asmbl_11798 // Retained and Spliced Intron # retained_intron 1069987-1070084 (orient:+) max_ev_support = 2 # spliced_intron 1069987-1070084 (orient:+) max_ev_support = 2 scaffold_14 + intron 1069987-1070084 asmbl_11788,asmbl_11791,asmbl_11792,asmbl_11793,asmbl_11794,asmbl_11795,asmbl_11796,asmbl_11797,asmbl_11798 scaffold_14 + retained_intron 1069987-1070084 asmbl_11789,asmbl_11790 // Retained and Spliced Intron # retained_intron 1070202-1070398 (orient:+) max_ev_support = 2 # spliced_intron 1070202-1070398 (orient:+) max_ev_support = 1 scaffold_14 + intron 1070202-1070398 asmbl_11794 scaffold_14 + retained_intron 1070202-1070398 asmbl_11789,asmbl_11793,asmbl_11795,asmbl_11796,asmbl_11798 // Retained and Spliced Intron # retained_intron 1070202-1070949 (orient:+) max_ev_support = 2 # spliced_intron 1070202-1070949 (orient:+) max_ev_support = 2 scaffold_14 + intron 1070202-1070949 asmbl_11788,asmbl_11790,asmbl_11791,asmbl_11792,asmbl_11797 scaffold_14 + retained_intron 1070202-1070949 asmbl_11789,asmbl_11793,asmbl_11795,asmbl_11796,asmbl_11798 // Retained and Spliced Intron # retained_intron 1069783-1069872 (orient:+) max_ev_support = 1 # spliced_intron 1069783-1069872 (orient:+) max_ev_support = 2 scaffold_14 + intron 1069783-1069872 asmbl_11788,asmbl_11793,asmbl_11794,asmbl_11797 scaffold_14 + retained_intron 1069783-1069872 asmbl_11795 // Retained and Spliced Intron # retained_intron 1069783-1069875 (orient:+) max_ev_support = 1 # spliced_intron 1069783-1069875 (orient:+) max_ev_support = 1 scaffold_14 + intron 1069783-1069875 asmbl_11791,asmbl_11792,asmbl_11796,asmbl_11798 scaffold_14 + retained_intron 1069783-1069875 asmbl_11795 // Retained and Spliced Intron # retained_intron 1094343-1094586 (orient:+) max_ev_support = 2 # spliced_intron 1094343-1094586 (orient:+) max_ev_support = 2 scaffold_14 + intron 1094343-1094586 asmbl_11802 scaffold_14 + retained_intron 1094343-1094586 asmbl_11800 // Retained and Spliced Intron # retained_intron 1094470-1094586 (orient:+) max_ev_support = 2 # spliced_intron 1094470-1094586 (orient:+) max_ev_support = 2 scaffold_14 + intron 1094470-1094586 asmbl_11801 scaffold_14 + retained_intron 1094470-1094586 asmbl_11800 // Retained and Spliced Intron # retained_intron 1111237-1111348 (orient:+) max_ev_support = 2 # spliced_intron 1111237-1111348 (orient:+) max_ev_support = 2 scaffold_14 + intron 1111237-1111348 asmbl_11806 scaffold_14 + retained_intron 1111237-1111348 asmbl_11807 // Retained and Spliced Intron # retained_intron 1111247-1111352 (orient:+) max_ev_support = 2 # spliced_intron 1111247-1111352 (orient:+) max_ev_support = 1 scaffold_14 + intron 1111247-1111352 asmbl_11808 scaffold_14 + retained_intron 1111247-1111352 asmbl_11807 // Retained and Spliced Intron # retained_intron 1127545-1127620 (orient:+) max_ev_support = 3 # spliced_intron 1127545-1127620 (orient:+) max_ev_support = 3 scaffold_14 + intron 1127545-1127620 asmbl_11809 scaffold_14 + retained_intron 1127545-1127620 asmbl_11810 // Retained and Spliced Intron # retained_intron 1178420-1178543 (orient:+) max_ev_support = 3 # spliced_intron 1178420-1178543 (orient:+) max_ev_support = 3 scaffold_14 + intron 1178420-1178543 asmbl_11814 scaffold_14 + retained_intron 1178420-1178543 asmbl_11815 // Exon Skipping and Retention # skipped_exon 1721037-1721580 (orient:+) max_ev_support = 3 # retained_exon 1721212-1721487 (orient:+) max_ev_support = 3 scaffold_14 + retained_exons 1721212-1721286,1721407-1721487 asmbl_11834 scaffold_14 + intron_skips_exon 1721037-1721580 asmbl_11835 // Exon Skipping and Retention # skipped_exon 2297643-2298415 (orient:+) max_ev_support = 1 # retained_exon 2298111-2298222 (orient:+) max_ev_support = 2 scaffold_14 + retained_exons 2298111-2298222 asmbl_11856,asmbl_11857,asmbl_11858 scaffold_14 + intron_skips_exon 2297643-2298415 asmbl_11855 // Retained and Spliced Intron # retained_intron 2573325-2573401 (orient:+) max_ev_support = 4 # spliced_intron 2573325-2573401 (orient:+) max_ev_support = 3 scaffold_14 + intron 2573325-2573401 asmbl_11879 scaffold_14 + retained_intron 2573325-2573401 asmbl_11880 // Retained and Spliced Intron # retained_intron 2895797-2895880 (orient:+) max_ev_support = 2 # spliced_intron 2895797-2895880 (orient:+) max_ev_support = 2 scaffold_14 + intron 2895797-2895880 asmbl_11892 scaffold_14 + retained_intron 2895797-2895880 asmbl_11891 // Retained and Spliced Intron # retained_intron 2898639-2898894 (orient:+) max_ev_support = 2 # spliced_intron 2898639-2898894 (orient:+) max_ev_support = 3 scaffold_14 + intron 2898639-2898894 asmbl_11893 scaffold_14 + retained_intron 2898639-2898894 asmbl_11894 // Retained and Spliced Intron # retained_intron 2899140-2899275 (orient:+) max_ev_support = 2 # spliced_intron 2899140-2899275 (orient:+) max_ev_support = 3 scaffold_14 + intron 2899140-2899275 asmbl_11893 scaffold_14 + retained_intron 2899140-2899275 asmbl_11894 // Retained and Spliced Intron # retained_intron 3097650-3097893 (orient:+) max_ev_support = 1 # spliced_intron 3097650-3097893 (orient:+) max_ev_support = 2 scaffold_14 + intron 3097650-3097893 asmbl_11900 scaffold_14 + retained_intron 3097650-3097893 asmbl_11901 // Exon Skipping and Retention # skipped_exon 3164010-3165418 (orient:+) max_ev_support = 1 # retained_exon 3164853-3165018 (orient:+) max_ev_support = 2 scaffold_14 + retained_exons 3164853-3165018 asmbl_11907,asmbl_11908,asmbl_11910,asmbl_11911 scaffold_14 + intron_skips_exon 3164010-3165418 asmbl_11909,asmbl_11920 // Retained and Spliced Intron # retained_intron 3165584-3165934 (orient:+) max_ev_support = 2 # spliced_intron 3165584-3165934 (orient:+) max_ev_support = 1 scaffold_14 + intron 3165584-3165934 asmbl_11908,asmbl_11909,asmbl_11910 scaffold_14 + retained_intron 3165584-3165934 asmbl_11907,asmbl_11911 // Exon Skipping and Retention # skipped_exon 3156204-3157076 (orient:+) max_ev_support = 2 # retained_exon 3156649-3156720 (orient:+) max_ev_support = 3 scaffold_14 + retained_exons 3156649-3156720 asmbl_11910,asmbl_11911,asmbl_11912,asmbl_11915,asmbl_11917,asmbl_11918,asmbl_11921,asmbl_11924 scaffold_14 + intron_skips_exon 3156204-3157076 asmbl_11913,asmbl_11914,asmbl_11916,asmbl_11922,asmbl_11923 // Exon Skipping and Retention # skipped_exon 3159934-3160251 (orient:+) max_ev_support = 1 # retained_exon 3160026-3160064 (orient:+) max_ev_support = 2 scaffold_14 + retained_exons 3160026-3160064 asmbl_11910,asmbl_11911,asmbl_11912,asmbl_11914,asmbl_11915,asmbl_11916,asmbl_11917,asmbl_11918,asmbl_11922 scaffold_14 + intron_skips_exon 3159934-3160251 asmbl_11921 // Exon Skipping and Retention # skipped_exon 3160506-3161274 (orient:+) max_ev_support = 2 # retained_exon 3160912-3161004 (orient:+) max_ev_support = 2 scaffold_14 + retained_exons 3160912-3161004 asmbl_11910,asmbl_11911,asmbl_11912,asmbl_11914,asmbl_11915,asmbl_11916,asmbl_11918,asmbl_11922,asmbl_11923,asmbl_11924 scaffold_14 + intron_skips_exon 3160506-3161274 asmbl_11917 // Retained and Spliced Intron # retained_intron 3159934-3160025 (orient:+) max_ev_support = 2 # spliced_intron 3159934-3160025 (orient:+) max_ev_support = 2 scaffold_14 + intron 3159934-3160025 asmbl_11910,asmbl_11911,asmbl_11912,asmbl_11914,asmbl_11915,asmbl_11916,asmbl_11917,asmbl_11918,asmbl_11922 scaffold_14 + retained_intron 3159934-3160025 asmbl_11913,asmbl_11923,asmbl_11924 // Retained and Spliced Intron # retained_intron 3159934-3160251 (orient:+) max_ev_support = 2 # spliced_intron 3159934-3160251 (orient:+) max_ev_support = 1 scaffold_14 + intron 3159934-3160251 asmbl_11921 scaffold_14 + retained_intron 3159934-3160251 asmbl_11913,asmbl_11923,asmbl_11924 // Retained and Spliced Intron # retained_intron 3160065-3160251 (orient:+) max_ev_support = 2 # spliced_intron 3160065-3160251 (orient:+) max_ev_support = 2 scaffold_14 + intron 3160065-3160251 asmbl_11910,asmbl_11911,asmbl_11912,asmbl_11914,asmbl_11915,asmbl_11916,asmbl_11917,asmbl_11918,asmbl_11922 scaffold_14 + retained_intron 3160065-3160251 asmbl_11913,asmbl_11923,asmbl_11924 // Retained and Spliced Intron # retained_intron 3160506-3160911 (orient:+) max_ev_support = 2 # spliced_intron 3160506-3160911 (orient:+) max_ev_support = 2 scaffold_14 + intron 3160506-3160911 asmbl_11910,asmbl_11911,asmbl_11912,asmbl_11914,asmbl_11915,asmbl_11916,asmbl_11918,asmbl_11921,asmbl_11922,asmbl_11923,asmbl_11924 scaffold_14 + retained_intron 3160506-3160911 asmbl_11913 // Retained and Spliced Intron # retained_intron 3160506-3161274 (orient:+) max_ev_support = 2 # spliced_intron 3160506-3161274 (orient:+) max_ev_support = 2 scaffold_14 + intron 3160506-3161274 asmbl_11917 scaffold_14 + retained_intron 3160506-3161274 asmbl_11913 // Retained and Spliced Intron # retained_intron 3161005-3161274 (orient:+) max_ev_support = 2 # spliced_intron 3161005-3161274 (orient:+) max_ev_support = 2 scaffold_14 + intron 3161005-3161274 asmbl_11910,asmbl_11911,asmbl_11912,asmbl_11914,asmbl_11915,asmbl_11916,asmbl_11918,asmbl_11922,asmbl_11923,asmbl_11924 scaffold_14 + retained_intron 3161005-3161274 asmbl_11913 // Retained and Spliced Intron # retained_intron 3161368-3161770 (orient:+) max_ev_support = 2 # spliced_intron 3161368-3161770 (orient:+) max_ev_support = 2 scaffold_14 + intron 3161368-3161770 asmbl_11917 scaffold_14 + retained_intron 3161368-3161770 asmbl_11915,asmbl_11916,asmbl_11922,asmbl_11923,asmbl_11924 // Retained and Spliced Intron # retained_intron 3161368-3162176 (orient:+) max_ev_support = 2 # spliced_intron 3161368-3162176 (orient:+) max_ev_support = 2 scaffold_14 + intron 3161368-3162176 asmbl_11910,asmbl_11911,asmbl_11912,asmbl_11914,asmbl_11918 scaffold_14 + retained_intron 3161368-3162176 asmbl_11915,asmbl_11916,asmbl_11922,asmbl_11923,asmbl_11924 // Retained and Spliced Intron # retained_intron 3161864-3162176 (orient:+) max_ev_support = 2 # spliced_intron 3161864-3162176 (orient:+) max_ev_support = 2 scaffold_14 + intron 3161864-3162176 asmbl_11917 scaffold_14 + retained_intron 3161864-3162176 asmbl_11915,asmbl_11916,asmbl_11922,asmbl_11923,asmbl_11924 // Exon Skipping and Retention # skipped_exon 3161368-3162176 (orient:+) max_ev_support = 2 # retained_exon 3161771-3161863 (orient:+) max_ev_support = 2 scaffold_14 + retained_exons 3161771-3161863 asmbl_11917 scaffold_14 + intron_skips_exon 3161368-3162176 asmbl_11910,asmbl_11911,asmbl_11912,asmbl_11914,asmbl_11918 // Retained and Spliced Intron # retained_intron 3152638-3152817 (orient:+) max_ev_support = 1 # spliced_intron 3152638-3152817 (orient:+) max_ev_support = 3 scaffold_14 + intron 3152638-3152817 asmbl_11910,asmbl_11911,asmbl_11912,asmbl_11913,asmbl_11914,asmbl_11915,asmbl_11916,asmbl_11917,asmbl_11918,asmbl_11923,asmbl_11924 scaffold_14 + retained_intron 3152638-3152817 asmbl_11922 // Exon Skipping and Retention # skipped_exon 3225324-3226535 (orient:+) max_ev_support = 1 # retained_exon 3225735-3225851 (orient:+) max_ev_support = 1 scaffold_14 + retained_exons 3225735-3225851 asmbl_11927 scaffold_14 + intron_skips_exon 3225324-3226535 asmbl_11925,asmbl_11926 // Retained and Spliced Intron # retained_intron 3244204-3244521 (orient:+) max_ev_support = 2 # spliced_intron 3244204-3244521 (orient:+) max_ev_support = 2 scaffold_14 + intron 3244204-3244521 asmbl_11929,asmbl_11933 scaffold_14 + retained_intron 3244204-3244521 asmbl_11928,asmbl_11931 // Retained and Spliced Intron # retained_intron 3243702-3243805 (orient:+) max_ev_support = 2 # spliced_intron 3243702-3243805 (orient:+) max_ev_support = 2 scaffold_14 + intron 3243702-3243805 asmbl_11928,asmbl_11929,asmbl_11933 scaffold_14 + retained_intron 3243702-3243805 asmbl_11931,asmbl_11932 // Retained and Spliced Intron # retained_intron 3240126-3240355 (orient:+) max_ev_support = 1 # spliced_intron 3240126-3240355 (orient:+) max_ev_support = 2 scaffold_14 + intron 3240126-3240355 asmbl_11928,asmbl_11929,asmbl_11934 scaffold_14 + retained_intron 3240126-3240355 asmbl_11933 // Retained and Spliced Intron # retained_intron 3388662-3389749 (orient:+) max_ev_support = 2 # spliced_intron 3388662-3389749 (orient:+) max_ev_support = 2 scaffold_14 + intron 3388662-3389749 asmbl_11941 scaffold_14 + retained_intron 3388662-3389749 asmbl_11940 // Retained and Spliced Intron # retained_intron 3418982-3419012 (orient:+) max_ev_support = 2 # spliced_intron 3418982-3419012 (orient:+) max_ev_support = 1 scaffold_14 + intron 3418982-3419012 asmbl_11947 scaffold_14 + retained_intron 3418982-3419012 asmbl_11946 // Retained and Spliced Intron # retained_intron 3588641-3588755 (orient:+) max_ev_support = 2 # spliced_intron 3588641-3588755 (orient:+) max_ev_support = 1 scaffold_14 + intron 3588641-3588755 asmbl_11951 scaffold_14 + retained_intron 3588641-3588755 asmbl_11952,asmbl_11953 // Retained and Spliced Intron # retained_intron 3588641-3588784 (orient:+) max_ev_support = 2 # spliced_intron 3588641-3588784 (orient:+) max_ev_support = 1 scaffold_14 + intron 3588641-3588784 asmbl_11954,asmbl_11955 scaffold_14 + retained_intron 3588641-3588784 asmbl_11952,asmbl_11953 // Retained and Spliced Intron # retained_intron 3590570-3591023 (orient:+) max_ev_support = 3 # spliced_intron 3590570-3591023 (orient:+) max_ev_support = 1 scaffold_14 + intron 3590570-3591023 asmbl_11957 scaffold_14 + retained_intron 3590570-3591023 asmbl_11956 // Exon Skipping and Retention # skipped_exon 3796395-3797745 (orient:+) max_ev_support = 2 # retained_exon 3797031-3797066 (orient:+) max_ev_support = 1 scaffold_14 + retained_exons 3797031-3797066 asmbl_11965 scaffold_14 + intron_skips_exon 3796395-3797745 asmbl_11964 // Retained and Spliced Intron # retained_intron 4116419-4116564 (orient:+) max_ev_support = 3 # spliced_intron 4116419-4116564 (orient:+) max_ev_support = 3 scaffold_14 + intron 4116419-4116564 asmbl_11972 scaffold_14 + retained_intron 4116419-4116564 asmbl_11971,asmbl_11973 // Retained and Spliced Intron # retained_intron 4116590-4116724 (orient:+) max_ev_support = 3 # spliced_intron 4116590-4116724 (orient:+) max_ev_support = 3 scaffold_14 + intron 4116590-4116724 asmbl_11971,asmbl_11972 scaffold_14 + retained_intron 4116590-4116724 asmbl_11973 // Exon Skipping and Retention # skipped_exon 4153501-4154454 (orient:+) max_ev_support = 1 # retained_exon 4154138-4154261 (orient:+) max_ev_support = 1 scaffold_14 + retained_exons 4154138-4154261 asmbl_11978 scaffold_14 + intron_skips_exon 4153501-4154454 asmbl_11979,asmbl_11980 // Retained and Spliced Intron # retained_intron 5451413-5451514 (orient:+) max_ev_support = 1 # spliced_intron 5451413-5451514 (orient:+) max_ev_support = 3 scaffold_14 + intron 5451413-5451514 asmbl_12012 scaffold_14 + retained_intron 5451413-5451514 asmbl_12014 // Retained and Spliced Intron # retained_intron 5596465-5596629 (orient:+) max_ev_support = 3 # spliced_intron 5596465-5596629 (orient:+) max_ev_support = 2 scaffold_14 + intron 5596465-5596629 asmbl_12029,asmbl_12031 scaffold_14 + retained_intron 5596465-5596629 asmbl_12028,asmbl_12030,asmbl_12032 // Retained and Spliced Intron # retained_intron 5597207-5597301 (orient:+) max_ev_support = 2 # spliced_intron 5597207-5597301 (orient:+) max_ev_support = 2 scaffold_14 + intron 5597207-5597301 asmbl_12030,asmbl_12031,asmbl_12032 scaffold_14 + retained_intron 5597207-5597301 asmbl_12028,asmbl_12029 // Retained and Spliced Intron # retained_intron 5597398-5598031 (orient:+) max_ev_support = 1 # spliced_intron 5597398-5598031 (orient:+) max_ev_support = 2 scaffold_14 + intron 5597398-5598031 asmbl_12028,asmbl_12029,asmbl_12030,asmbl_12031 scaffold_14 + retained_intron 5597398-5598031 asmbl_12032 // Exon Skipping and Retention # skipped_exon 6282250-6283420 (orient:+) max_ev_support = 2 # retained_exon 6282857-6282910 (orient:+) max_ev_support = 2 scaffold_14 + retained_exons 6282857-6282910 asmbl_12056,asmbl_12057,asmbl_12058 scaffold_14 + intron_skips_exon 6282250-6283420 asmbl_12059 // Retained and Spliced Intron # retained_intron 6281800-6282048 (orient:+) max_ev_support = 2 # spliced_intron 6281800-6282048 (orient:+) max_ev_support = 2 scaffold_14 + intron 6281800-6282048 asmbl_12056 scaffold_14 + retained_intron 6281800-6282048 asmbl_12057,asmbl_12058,asmbl_12059 // Retained and Spliced Intron # retained_intron 6283532-6283649 (orient:+) max_ev_support = 2 # spliced_intron 6283532-6283649 (orient:+) max_ev_support = 2 scaffold_14 + intron 6283532-6283649 asmbl_12056,asmbl_12057,asmbl_12058 scaffold_14 + retained_intron 6283532-6283649 asmbl_12059,asmbl_12060 // Retained and Spliced Intron # retained_intron 6291638-6291779 (orient:+) max_ev_support = 2 # spliced_intron 6291638-6291779 (orient:+) max_ev_support = 2 scaffold_14 + intron 6291638-6291779 asmbl_12063,asmbl_12064 scaffold_14 + retained_intron 6291638-6291779 asmbl_12066 // Exon Skipping and Retention # skipped_exon 6368162-6369799 (orient:+) max_ev_support = 1 # retained_exon 6369532-6369599 (orient:+) max_ev_support = 2 scaffold_14 + retained_exons 6369532-6369599 asmbl_12071,asmbl_12072,asmbl_12074 scaffold_14 + intron_skips_exon 6368162-6369799 asmbl_12075 // Retained and Spliced Intron # retained_intron 6412534-6412614 (orient:+) max_ev_support = 1 # spliced_intron 6412534-6412614 (orient:+) max_ev_support = 2 scaffold_14 + intron 6412534-6412614 asmbl_12077 scaffold_14 + retained_intron 6412534-6412614 asmbl_12078 // Retained and Spliced Intron # retained_intron 6582351-6582780 (orient:+) max_ev_support = 2 # spliced_intron 6582351-6582780 (orient:+) max_ev_support = 2 scaffold_14 + intron 6582351-6582780 asmbl_12087 scaffold_14 + retained_intron 6582351-6582780 asmbl_12088 // Retained and Spliced Intron # retained_intron 6596360-6596436 (orient:+) max_ev_support = 2 # spliced_intron 6596360-6596436 (orient:+) max_ev_support = 2 scaffold_14 + intron 6596360-6596436 asmbl_12091 scaffold_14 + retained_intron 6596360-6596436 asmbl_12092 // Retained and Spliced Intron # retained_intron 6880513-6880765 (orient:+) max_ev_support = 1 # spliced_intron 6880513-6880765 (orient:+) max_ev_support = 2 scaffold_14 + intron 6880513-6880765 asmbl_12107 scaffold_14 + retained_intron 6880513-6880765 asmbl_12108 // Exon Skipping and Retention # skipped_exon 6901549-6902436 (orient:+) max_ev_support = 2 # retained_exon 6901924-6901956 (orient:+) max_ev_support = 2 scaffold_14 + retained_exons 6901924-6901956 asmbl_12113 scaffold_14 + intron_skips_exon 6901549-6902436 asmbl_12112 // Retained and Spliced Intron # retained_intron 6938531-6938657 (orient:+) max_ev_support = 1 # spliced_intron 6938531-6938657 (orient:+) max_ev_support = 2 scaffold_14 + intron 6938531-6938657 asmbl_12119 scaffold_14 + retained_intron 6938531-6938657 asmbl_12120 // Exon Skipping and Retention # skipped_exon 7027503-7029081 (orient:+) max_ev_support = 1 # retained_exon 7028469-7028528 (orient:+) max_ev_support = 2 scaffold_14 + retained_exons 7028469-7028528 asmbl_12125 scaffold_14 + intron_skips_exon 7027503-7029081 asmbl_12126 // Retained and Spliced Intron # retained_intron 7216560-7216831 (orient:+) max_ev_support = 2 # spliced_intron 7216560-7216831 (orient:+) max_ev_support = 2 scaffold_14 + intron 7216560-7216831 asmbl_12135,asmbl_12137 scaffold_14 + retained_intron 7216560-7216831 asmbl_12134,asmbl_12136 // Retained and Spliced Intron # retained_intron 7216942-7217143 (orient:+) max_ev_support = 2 # spliced_intron 7216942-7217143 (orient:+) max_ev_support = 2 scaffold_14 + intron 7216942-7217143 asmbl_12135,asmbl_12136,asmbl_12137 scaffold_14 + retained_intron 7216942-7217143 asmbl_12134 // Retained and Spliced Intron # retained_intron 7215130-7215744 (orient:+) max_ev_support = 1 # spliced_intron 7215130-7215744 (orient:+) max_ev_support = 2 scaffold_14 + intron 7215130-7215744 asmbl_12134,asmbl_12135 scaffold_14 + retained_intron 7215130-7215744 asmbl_12136,asmbl_12137 // Retained and Spliced Intron # retained_intron 7215812-7216426 (orient:+) max_ev_support = 1 # spliced_intron 7215812-7216426 (orient:+) max_ev_support = 2 scaffold_14 + intron 7215812-7216426 asmbl_12134,asmbl_12135,asmbl_12137 scaffold_14 + retained_intron 7215812-7216426 asmbl_12136 // Exon Skipping and Retention # skipped_exon 7295227-7295668 (orient:+) max_ev_support = 2 # retained_exon 7295261-7295362 (orient:+) max_ev_support = 2 scaffold_14 + retained_exons 7295261-7295362 asmbl_12147,asmbl_12148,asmbl_12150 scaffold_14 + intron_skips_exon 7295227-7295668 asmbl_12149 // Retained and Spliced Intron # retained_intron 7297974-7298196 (orient:+) max_ev_support = 2 # spliced_intron 7297974-7298196 (orient:+) max_ev_support = 2 scaffold_14 + intron 7297974-7298196 asmbl_12149,asmbl_12150,asmbl_12151 scaffold_14 + retained_intron 7297974-7298196 asmbl_12147,asmbl_12148 // Retained and Spliced Intron # retained_intron 7298351-7298744 (orient:+) max_ev_support = 2 # spliced_intron 7298351-7298744 (orient:+) max_ev_support = 2 scaffold_14 + intron 7298351-7298744 asmbl_12149,asmbl_12150 scaffold_14 + retained_intron 7298351-7298744 asmbl_12148,asmbl_12151 // Retained and Spliced Intron # retained_intron 7298482-7298744 (orient:+) max_ev_support = 1 # spliced_intron 7298482-7298744 (orient:+) max_ev_support = 2 scaffold_14 + intron 7298482-7298744 asmbl_12147 scaffold_14 + retained_intron 7298482-7298744 asmbl_12148,asmbl_12151 // Exon Skipping and Retention # skipped_exon 7294285-7295260 (orient:+) max_ev_support = 2 # retained_exon 7295149-7295226 (orient:+) max_ev_support = 2 scaffold_14 + retained_exons 7295149-7295226 asmbl_12149 scaffold_14 + intron_skips_exon 7294285-7295260 asmbl_12147,asmbl_12148,asmbl_12150 // Exon Skipping and Retention # skipped_exon 7432572-7433301 (orient:+) max_ev_support = 2 # retained_exon 7432963-7432983 (orient:+) max_ev_support = 2 scaffold_14 + retained_exons 7432963-7432983 asmbl_12158 scaffold_14 + intron_skips_exon 7432572-7433301 asmbl_12157,asmbl_12159 // Exon Skipping and Retention # skipped_exon 7495217-7496741 (orient:+) max_ev_support = 1 # retained_exon 7495630-7496652 (orient:+) max_ev_support = 4 scaffold_14 + retained_exons 7495630-7495697,7495943-7496393,7496591-7496652 asmbl_12166 scaffold_14 + intron_skips_exon 7495217-7496741 asmbl_12170 // Retained and Spliced Intron # retained_intron 7495217-7495625 (orient:+) max_ev_support = 2 # spliced_intron 7495217-7495625 (orient:+) max_ev_support = 1 scaffold_14 + intron 7495217-7495625 asmbl_12167 scaffold_14 + retained_intron 7495217-7495625 asmbl_12168 // Retained and Spliced Intron # retained_intron 7495217-7495629 (orient:+) max_ev_support = 2 # spliced_intron 7495217-7495629 (orient:+) max_ev_support = 3 scaffold_14 + intron 7495217-7495629 asmbl_12166 scaffold_14 + retained_intron 7495217-7495629 asmbl_12168 // Retained and Spliced Intron # retained_intron 8002248-8002475 (orient:+) max_ev_support = 5 # spliced_intron 8002248-8002475 (orient:+) max_ev_support = 2 scaffold_14 + intron 8002248-8002475 asmbl_12184 scaffold_14 + retained_intron 8002248-8002475 asmbl_12182,asmbl_12183 // Exon Skipping and Retention # skipped_exon 8007446-8007816 (orient:+) max_ev_support = 1 # retained_exon 8007596-8007645 (orient:+) max_ev_support = 1 scaffold_14 + retained_exons 8007596-8007645 asmbl_12187 scaffold_14 + intron_skips_exon 8007446-8007816 asmbl_12186 // Retained and Spliced Intron # retained_intron 8007646-8007816 (orient:+) max_ev_support = 2 # spliced_intron 8007646-8007816 (orient:+) max_ev_support = 2 scaffold_14 + intron 8007646-8007816 asmbl_12187,asmbl_12189 scaffold_14 + retained_intron 8007646-8007816 asmbl_12190 // Retained and Spliced Intron # retained_intron 8278439-8279308 (orient:+) max_ev_support = 2 # spliced_intron 8278439-8279308 (orient:+) max_ev_support = 1 scaffold_14 + intron 8278439-8279308 asmbl_12216 scaffold_14 + retained_intron 8278439-8279308 asmbl_12213,asmbl_12214 // Exon Skipping and Retention # skipped_exon 8307389-8308665 (orient:+) max_ev_support = 1 # retained_exon 8307760-8307872 (orient:+) max_ev_support = 2 scaffold_14 + retained_exons 8307760-8307872 asmbl_12218 scaffold_14 + intron_skips_exon 8307389-8308665 asmbl_12221 // Retained and Spliced Intron # retained_intron 8415587-8415753 (orient:+) max_ev_support = 3 # spliced_intron 8415587-8415753 (orient:+) max_ev_support = 2 scaffold_14 + intron 8415587-8415753 asmbl_12243 scaffold_14 + retained_intron 8415587-8415753 asmbl_12242,asmbl_12244,asmbl_12245 // Retained and Spliced Intron # retained_intron 8415776-8416021 (orient:+) max_ev_support = 5 # spliced_intron 8415776-8416021 (orient:+) max_ev_support = 2 scaffold_14 + intron 8415776-8416021 asmbl_12243,asmbl_12244,asmbl_12245 scaffold_14 + retained_intron 8415776-8416021 asmbl_12242 // Retained and Spliced Intron # retained_intron 8416699-8416856 (orient:+) max_ev_support = 3 # spliced_intron 8416699-8416856 (orient:+) max_ev_support = 2 scaffold_14 + intron 8416699-8416856 asmbl_12243,asmbl_12245 scaffold_14 + retained_intron 8416699-8416856 asmbl_12242,asmbl_12244 // Retained and Spliced Intron # retained_intron 8589819-8590023 (orient:+) max_ev_support = 2 # spliced_intron 8589819-8590023 (orient:+) max_ev_support = 2 scaffold_14 + intron 8589819-8590023 asmbl_12254 scaffold_14 + retained_intron 8589819-8590023 asmbl_12253 // Exon Skipping and Retention # skipped_exon 9071662-9071971 (orient:+) max_ev_support = 1 # retained_exon 9071742-9071781 (orient:+) max_ev_support = 2 scaffold_14 + retained_exons 9071742-9071781 asmbl_12271 scaffold_14 + intron_skips_exon 9071662-9071971 asmbl_12270 // Retained and Spliced Intron # retained_intron 9475503-9475665 (orient:+) max_ev_support = 3 # spliced_intron 9475503-9475665 (orient:+) max_ev_support = 1 scaffold_14 + intron 9475503-9475665 asmbl_12286 scaffold_14 + retained_intron 9475503-9475665 asmbl_12284,asmbl_12285 // Retained and Spliced Intron # retained_intron 9475827-9475918 (orient:+) max_ev_support = 3 # spliced_intron 9475827-9475918 (orient:+) max_ev_support = 3 scaffold_14 + intron 9475827-9475918 asmbl_12284,asmbl_12286 scaffold_14 + retained_intron 9475827-9475918 asmbl_12285 // Retained and Spliced Intron # retained_intron 10479149-10479292 (orient:+) max_ev_support = 2 # spliced_intron 10479149-10479292 (orient:+) max_ev_support = 1 scaffold_14 + intron 10479149-10479292 asmbl_12324 scaffold_14 + retained_intron 10479149-10479292 asmbl_12321,asmbl_12325 // Retained and Spliced Intron # retained_intron 10479149-10479549 (orient:+) max_ev_support = 2 # spliced_intron 10479149-10479549 (orient:+) max_ev_support = 2 scaffold_14 + intron 10479149-10479549 asmbl_12322 scaffold_14 + retained_intron 10479149-10479549 asmbl_12321 // Retained and Spliced Intron # retained_intron 10479363-10479549 (orient:+) max_ev_support = 2 # spliced_intron 10479363-10479549 (orient:+) max_ev_support = 1 scaffold_14 + intron 10479363-10479549 asmbl_12325 scaffold_14 + retained_intron 10479363-10479549 asmbl_12321,asmbl_12324 // Retained and Spliced Intron # retained_intron 10717597-10717700 (orient:+) max_ev_support = 2 # spliced_intron 10717597-10717700 (orient:+) max_ev_support = 3 scaffold_14 + intron 10717597-10717700 asmbl_12343,asmbl_12345 scaffold_14 + retained_intron 10717597-10717700 asmbl_12344 // Retained and Spliced Intron # retained_intron 11513522-11513728 (orient:+) max_ev_support = 5 # spliced_intron 11513522-11513728 (orient:+) max_ev_support = 1 scaffold_14 + intron 11513522-11513728 asmbl_12382 scaffold_14 + retained_intron 11513522-11513728 asmbl_12381 // Retained and Spliced Intron # retained_intron 11550073-11550179 (orient:+) max_ev_support = 1 # spliced_intron 11550073-11550179 (orient:+) max_ev_support = 2 scaffold_14 + intron 11550073-11550179 asmbl_12386 scaffold_14 + retained_intron 11550073-11550179 asmbl_12387 // Retained and Spliced Intron # retained_intron 11944578-11944701 (orient:+) max_ev_support = 2 # spliced_intron 11944578-11944701 (orient:+) max_ev_support = 3 scaffold_14 + intron 11944578-11944701 asmbl_12408 scaffold_14 + retained_intron 11944578-11944701 asmbl_12409 // Retained and Spliced Intron # retained_intron 11945131-11945237 (orient:+) max_ev_support = 2 # spliced_intron 11945131-11945237 (orient:+) max_ev_support = 3 scaffold_14 + intron 11945131-11945237 asmbl_12408 scaffold_14 + retained_intron 11945131-11945237 asmbl_12410 // Retained and Spliced Intron # retained_intron 12154408-12154530 (orient:+) max_ev_support = 2 # spliced_intron 12154408-12154530 (orient:+) max_ev_support = 2 scaffold_14 + intron 12154408-12154530 asmbl_12415 scaffold_14 + retained_intron 12154408-12154530 asmbl_12416 // Retained and Spliced Intron # retained_intron 12351231-12351424 (orient:+) max_ev_support = 1 # spliced_intron 12351231-12351424 (orient:+) max_ev_support = 2 scaffold_14 + intron 12351231-12351424 asmbl_12423,asmbl_12425 scaffold_14 + retained_intron 12351231-12351424 asmbl_12426 // Retained and Spliced Intron # retained_intron 12351303-12351424 (orient:+) max_ev_support = 1 # spliced_intron 12351303-12351424 (orient:+) max_ev_support = 2 scaffold_14 + intron 12351303-12351424 asmbl_12424 scaffold_14 + retained_intron 12351303-12351424 asmbl_12426 // Retained and Spliced Intron # retained_intron 13217591-13219618 (orient:+) max_ev_support = 2 # spliced_intron 13217591-13219618 (orient:+) max_ev_support = 2 scaffold_14 + intron 13217591-13219618 asmbl_12457,asmbl_12458 scaffold_14 + retained_intron 13217591-13219618 asmbl_12461 // Retained and Spliced Intron # retained_intron 13223477-13223628 (orient:+) max_ev_support = 1 # spliced_intron 13223477-13223628 (orient:+) max_ev_support = 2 scaffold_14 + intron 13223477-13223628 asmbl_12462,asmbl_12464,asmbl_12467,asmbl_12468,asmbl_12469 scaffold_14 + retained_intron 13223477-13223628 asmbl_12466 // Retained and Spliced Intron # retained_intron 13223723-13223984 (orient:+) max_ev_support = 1 # spliced_intron 13223723-13223984 (orient:+) max_ev_support = 2 scaffold_14 + intron 13223723-13223984 asmbl_12462,asmbl_12464,asmbl_12469 scaffold_14 + retained_intron 13223723-13223984 asmbl_12466,asmbl_12467,asmbl_12468 // Retained and Spliced Intron # retained_intron 13895808-13895933 (orient:+) max_ev_support = 1 # spliced_intron 13895808-13895933 (orient:+) max_ev_support = 1 scaffold_14 + intron 13895808-13895933 asmbl_12511,asmbl_12512,asmbl_12513 scaffold_14 + retained_intron 13895808-13895933 asmbl_12510 // Retained and Spliced Intron # retained_intron 13897375-13897695 (orient:+) max_ev_support = 1 # spliced_intron 13897375-13897695 (orient:+) max_ev_support = 2 scaffold_14 + intron 13897375-13897695 asmbl_12509,asmbl_12512 scaffold_14 + retained_intron 13897375-13897695 asmbl_12515,asmbl_12516 // Retained and Spliced Intron # retained_intron 13897375-13897829 (orient:+) max_ev_support = 1 # spliced_intron 13897375-13897829 (orient:+) max_ev_support = 1 scaffold_14 + intron 13897375-13897829 asmbl_12510,asmbl_12513 scaffold_14 + retained_intron 13897375-13897829 asmbl_12515,asmbl_12516 // Retained and Spliced Intron # retained_intron 13897375-13897832 (orient:+) max_ev_support = 1 # spliced_intron 13897375-13897832 (orient:+) max_ev_support = 1 scaffold_14 + intron 13897375-13897832 asmbl_12514 scaffold_14 + retained_intron 13897375-13897832 asmbl_12515,asmbl_12516 // Retained and Spliced Intron # retained_intron 13897914-13898395 (orient:+) max_ev_support = 1 # spliced_intron 13897914-13898395 (orient:+) max_ev_support = 2 scaffold_14 + intron 13897914-13898395 asmbl_12509,asmbl_12510,asmbl_12512,asmbl_12513,asmbl_12514 scaffold_14 + retained_intron 13897914-13898395 asmbl_12515,asmbl_12516 // Retained and Spliced Intron # retained_intron 13901208-13902169 (orient:+) max_ev_support = 1 # spliced_intron 13901208-13902169 (orient:+) max_ev_support = 1 scaffold_14 + intron 13901208-13902169 asmbl_12512 scaffold_14 + retained_intron 13901208-13902169 asmbl_12515,asmbl_12516 // Retained and Spliced Intron # retained_intron 13900780-13900986 (orient:+) max_ev_support = 1 # spliced_intron 13900780-13900986 (orient:+) max_ev_support = 1 scaffold_14 + intron 13900780-13900986 asmbl_12512,asmbl_12515 scaffold_14 + retained_intron 13900780-13900986 asmbl_12516 // Exon Skipping and Retention # skipped_exon 14143576-14144727 (orient:+) max_ev_support = 1 # retained_exon 14144219-14144317 (orient:+) max_ev_support = 2 scaffold_14 + retained_exons 14144219-14144317 asmbl_12523,asmbl_12525,asmbl_12528 scaffold_14 + intron_skips_exon 14143576-14144727 asmbl_12526,asmbl_12527 // Exon Skipping and Retention # skipped_exon 14147599-14148817 (orient:+) max_ev_support = 1 # retained_exon 14147748-14147954 (orient:+) max_ev_support = 2 scaffold_14 + retained_exons 14147748-14147811,14147913-14147954 asmbl_12523,asmbl_12527 scaffold_14 + intron_skips_exon 14147599-14148817 asmbl_12525 // Exon Skipping and Retention # skipped_exon 14147812-14148982 (orient:+) max_ev_support = 1 # retained_exon 14147913-14147954 (orient:+) max_ev_support = 2 scaffold_14 + retained_exons 14147913-14147954 asmbl_12523,asmbl_12527 scaffold_14 + intron_skips_exon 14147812-14148982 asmbl_12528 // Exon Skipping and Retention # skipped_exon 14147955-14149322 (orient:+) max_ev_support = 2 # retained_exon 14148818-14149024 (orient:+) max_ev_support = 1 scaffold_14 + retained_exons 14148818-14148881,14148983-14149024 asmbl_12525 scaffold_14 + intron_skips_exon 14147955-14149322 asmbl_12523,asmbl_12527 // Exon Skipping and Retention # skipped_exon 14143142-14144218 (orient:+) max_ev_support = 2 # retained_exon 14143477-14143575 (orient:+) max_ev_support = 1 scaffold_14 + retained_exons 14143477-14143575 asmbl_12526,asmbl_12527 scaffold_14 + intron_skips_exon 14143142-14144218 asmbl_12523,asmbl_12525,asmbl_12528 // Exon Skipping and Retention # skipped_exon 14147955-14149322 (orient:+) max_ev_support = 2 # retained_exon 14148983-14149024 (orient:+) max_ev_support = 1 scaffold_14 + retained_exons 14148983-14149024 asmbl_12528 scaffold_14 + intron_skips_exon 14147955-14149322 asmbl_12523,asmbl_12527 // Exon Skipping and Retention # skipped_exon 14386356-14387535 (orient:+) max_ev_support = 1 # retained_exon 14387178-14387238 (orient:+) max_ev_support = 1 scaffold_14 + retained_exons 14387178-14387238 asmbl_12544 scaffold_14 + intron_skips_exon 14386356-14387535 asmbl_12545 // Exon Skipping and Retention # skipped_exon 14386053-14387177 (orient:+) max_ev_support = 1 # retained_exon 14386295-14386355 (orient:+) max_ev_support = 1 scaffold_14 + retained_exons 14386295-14386355 asmbl_12545 scaffold_14 + intron_skips_exon 14386053-14387177 asmbl_12544 // Retained and Spliced Intron # retained_intron 15247760-15247780 (orient:+) max_ev_support = 1 # spliced_intron 15247760-15247780 (orient:+) max_ev_support = 1 scaffold_14 + intron 15247760-15247780 asmbl_12581 scaffold_14 + retained_intron 15247760-15247780 asmbl_12580 // Retained and Spliced Intron # retained_intron 15464262-15464367 (orient:+) max_ev_support = 2 # spliced_intron 15464262-15464367 (orient:+) max_ev_support = 3 scaffold_14 + intron 15464262-15464367 asmbl_12595 scaffold_14 + retained_intron 15464262-15464367 asmbl_12596 // Retained and Spliced Intron # retained_intron 15468065-15468154 (orient:+) max_ev_support = 1 # spliced_intron 15468065-15468154 (orient:+) max_ev_support = 1 scaffold_14 + intron 15468065-15468154 asmbl_12598 scaffold_14 + retained_intron 15468065-15468154 asmbl_12599 // Retained and Spliced Intron # retained_intron 15468155-15468287 (orient:+) max_ev_support = 1 # spliced_intron 15468155-15468287 (orient:+) max_ev_support = 1 scaffold_14 + intron 15468155-15468287 asmbl_12597 scaffold_14 + retained_intron 15468155-15468287 asmbl_12599 // Retained and Spliced Intron # retained_intron 15469046-15469737 (orient:+) max_ev_support = 1 # spliced_intron 15469046-15469737 (orient:+) max_ev_support = 2 scaffold_14 + intron 15469046-15469737 asmbl_12600,asmbl_12601 scaffold_14 + retained_intron 15469046-15469737 asmbl_12603 // Retained and Spliced Intron # retained_intron 15469859-15470058 (orient:+) max_ev_support = 1 # spliced_intron 15469859-15470058 (orient:+) max_ev_support = 2 scaffold_14 + intron 15469859-15470058 asmbl_12600,asmbl_12601 scaffold_14 + retained_intron 15469859-15470058 asmbl_12603 // Retained and Spliced Intron # retained_intron 15565628-15565681 (orient:+) max_ev_support = 2 # spliced_intron 15565628-15565681 (orient:+) max_ev_support = 1 scaffold_14 + intron 15565628-15565681 asmbl_12624 scaffold_14 + retained_intron 15565628-15565681 asmbl_12619,asmbl_12622,asmbl_12623,asmbl_12625 // Retained and Spliced Intron # retained_intron 15565742-15565795 (orient:+) max_ev_support = 2 # spliced_intron 15565742-15565795 (orient:+) max_ev_support = 1 scaffold_14 + intron 15565742-15565795 asmbl_12622 scaffold_14 + retained_intron 15565742-15565795 asmbl_12619,asmbl_12623,asmbl_12624,asmbl_12625 // Exon Skipping and Retention # skipped_exon 15565676-15565918 (orient:+) max_ev_support = 1 # retained_exon 15565850-15565903 (orient:+) max_ev_support = 2 scaffold_14 + retained_exons 15565850-15565903 asmbl_12619,asmbl_12625 scaffold_14 + intron_skips_exon 15565676-15565918 asmbl_12621 // Retained and Spliced Intron # retained_intron 15565823-15565849 (orient:+) max_ev_support = 1 # spliced_intron 15565823-15565849 (orient:+) max_ev_support = 2 scaffold_14 + intron 15565823-15565849 asmbl_12619,asmbl_12625 scaffold_14 + retained_intron 15565823-15565849 asmbl_12622,asmbl_12623,asmbl_12624 // Retained and Spliced Intron # retained_intron 15565904-15565930 (orient:+) max_ev_support = 1 # spliced_intron 15565904-15565930 (orient:+) max_ev_support = 2 scaffold_14 + intron 15565904-15565930 asmbl_12619,asmbl_12625 scaffold_14 + retained_intron 15565904-15565930 asmbl_12622,asmbl_12624 // Retained and Spliced Intron # retained_intron 15565919-15565945 (orient:+) max_ev_support = 1 # spliced_intron 15565919-15565945 (orient:+) max_ev_support = 1 scaffold_14 + intron 15565919-15565945 asmbl_12623 scaffold_14 + retained_intron 15565919-15565945 asmbl_12622,asmbl_12624 // Retained and Spliced Intron # retained_intron 15566459-15566494 (orient:+) max_ev_support = 1 # spliced_intron 15566459-15566494 (orient:+) max_ev_support = 2 scaffold_14 + intron 15566459-15566494 asmbl_12619,asmbl_12622,asmbl_12623,asmbl_12624 scaffold_14 + retained_intron 15566459-15566494 asmbl_12625 // Exon Skipping and Retention # skipped_exon 15583680-15586492 (orient:+) max_ev_support = 1 # retained_exon 15584128-15585898 (orient:+) max_ev_support = 2 scaffold_14 + retained_exons 15584128-15584169,15585637-15585678,15585857-15585898 asmbl_12628 scaffold_14 + retained_exons 15584128-15584169,15585857-15585898 asmbl_12634 scaffold_14 + retained_exons 15584128-15584169,15584767-15584808,15585857-15585898 asmbl_12632 scaffold_14 + intron_skips_exon 15583680-15584766 asmbl_12629 scaffold_14 + intron_skips_exon 15585029-15586492 asmbl_12629,asmbl_12633 scaffold_14 + intron_skips_exon 15583680-15584986 asmbl_12633 // Exon Skipping and Retention # skipped_exon 15584809-15585856 (orient:+) max_ev_support = 1 # retained_exon 15585637-15585678 (orient:+) max_ev_support = 2 scaffold_14 + retained_exons 15585637-15585678 asmbl_12628 scaffold_14 + intron_skips_exon 15584809-15585856 asmbl_12632 // Exon Skipping and Retention # skipped_exon 15584170-15585856 (orient:+) max_ev_support = 1 # retained_exon 15585637-15585678 (orient:+) max_ev_support = 2 scaffold_14 + retained_exons 15585637-15585678 asmbl_12628 scaffold_14 + intron_skips_exon 15584170-15585856 asmbl_12634 // Exon Skipping and Retention # skipped_exon 15585029-15586492 (orient:+) max_ev_support = 1 # retained_exon 15585637-15585898 (orient:+) max_ev_support = 2 scaffold_14 + retained_exons 15585637-15585678,15585857-15585898 asmbl_12628 scaffold_14 + intron_skips_exon 15585029-15586492 asmbl_12630,asmbl_12631,asmbl_12629 // Exon Skipping and Retention # skipped_exon 15584170-15584986 (orient:+) max_ev_support = 1 # retained_exon 15584767-15584808 (orient:+) max_ev_support = 1 scaffold_14 + retained_exons 15584767-15584808 asmbl_12632,asmbl_12629,asmbl_12630 scaffold_14 + intron_skips_exon 15584170-15584986 asmbl_12631 // Exon Skipping and Retention # skipped_exon 15583680-15584986 (orient:+) max_ev_support = 1 # retained_exon 15584767-15584808 (orient:+) max_ev_support = 1 scaffold_14 + retained_exons 15584767-15584808 asmbl_12632,asmbl_12629,asmbl_12630 scaffold_14 + intron_skips_exon 15583680-15584986 asmbl_12633 // Exon Skipping and Retention # skipped_exon 15584170-15585636 (orient:+) max_ev_support = 2 # retained_exon 15584767-15585028 (orient:+) max_ev_support = 1 scaffold_14 + retained_exons 15584767-15584808,15584987-15585028 asmbl_12629,asmbl_12630 scaffold_14 + intron_skips_exon 15584170-15585636 asmbl_12628 // Exon Skipping and Retention # skipped_exon 15584170-15585856 (orient:+) max_ev_support = 1 # retained_exon 15584767-15585028 (orient:+) max_ev_support = 1 scaffold_14 + retained_exons 15584767-15584808,15584987-15585028 asmbl_12629,asmbl_12630 scaffold_14 + intron_skips_exon 15584170-15585856 asmbl_12634 // Exon Skipping and Retention # skipped_exon 15583680-15584766 (orient:+) max_ev_support = 1 # retained_exon 15584128-15584169 (orient:+) max_ev_support = 1 scaffold_14 + retained_exons 15584128-15584169 asmbl_12630,asmbl_12631,asmbl_12632 scaffold_14 + intron_skips_exon 15583680-15584766 asmbl_12629 // Exon Skipping and Retention # skipped_exon 15583680-15584986 (orient:+) max_ev_support = 1 # retained_exon 15584128-15584169 (orient:+) max_ev_support = 1 scaffold_14 + retained_exons 15584128-15584169 asmbl_12630,asmbl_12631,asmbl_12632 scaffold_14 + intron_skips_exon 15583680-15584986 asmbl_12633 // Exon Skipping and Retention # skipped_exon 15584809-15585856 (orient:+) max_ev_support = 1 # retained_exon 15584987-15585028 (orient:+) max_ev_support = 1 scaffold_14 + retained_exons 15584987-15585028 asmbl_12631,asmbl_12633,asmbl_12629,asmbl_12630 scaffold_14 + intron_skips_exon 15584809-15585856 asmbl_12632 // Exon Skipping and Retention # skipped_exon 15584170-15585856 (orient:+) max_ev_support = 1 # retained_exon 15584987-15585028 (orient:+) max_ev_support = 1 scaffold_14 + retained_exons 15584987-15585028 asmbl_12631,asmbl_12633,asmbl_12629,asmbl_12630 scaffold_14 + intron_skips_exon 15584170-15585856 asmbl_12634 // Exon Skipping and Retention # skipped_exon 15584170-15585856 (orient:+) max_ev_support = 1 # retained_exon 15584767-15584808 (orient:+) max_ev_support = 1 scaffold_14 + retained_exons 15584767-15584808 asmbl_12632,asmbl_12629,asmbl_12630 scaffold_14 + intron_skips_exon 15584170-15585856 asmbl_12634 // Exon Skipping and Retention # skipped_exon 15584170-15586492 (orient:+) max_ev_support = 1 # retained_exon 15584767-15585898 (orient:+) max_ev_support = 1 scaffold_14 + retained_exons 15584767-15584808,15585857-15585898 asmbl_12632 scaffold_14 + intron_skips_exon 15584170-15584986 asmbl_12631 scaffold_14 + intron_skips_exon 15585029-15586492 asmbl_12631 // Exon Skipping and Retention # skipped_exon 15585029-15586492 (orient:+) max_ev_support = 1 # retained_exon 15585857-15585898 (orient:+) max_ev_support = 1 scaffold_14 + retained_exons 15585857-15585898 asmbl_12632,asmbl_12634 scaffold_14 + intron_skips_exon 15585029-15586492 asmbl_12630,asmbl_12631,asmbl_12629 // Retained and Spliced Intron # retained_intron 15638709-15638796 (orient:+) max_ev_support = 1 # spliced_intron 15638709-15638796 (orient:+) max_ev_support = 3 scaffold_14 + intron 15638709-15638796 asmbl_12637 scaffold_14 + retained_intron 15638709-15638796 asmbl_12638 // Exon Skipping and Retention # skipped_exon 15940465-15942993 (orient:+) max_ev_support = 1 # retained_exon 15942712-15942776 (orient:+) max_ev_support = 1 scaffold_14 + retained_exons 15942712-15942776 asmbl_12651 scaffold_14 + intron_skips_exon 15940465-15942993 asmbl_12652 // Retained and Spliced Intron # retained_intron 150868-151276 (orient:-) max_ev_support = 2 # spliced_intron 150868-151276 (orient:-) max_ev_support = 2 scaffold_14 - intron 150868-151276 asmbl_12778,asmbl_12779,asmbl_12780,asmbl_12781,asmbl_12782,asmbl_12783 scaffold_14 - retained_intron 150868-151276 asmbl_12777 // Retained and Spliced Intron # retained_intron 151364-151716 (orient:-) max_ev_support = 2 # spliced_intron 151364-151716 (orient:-) max_ev_support = 1 scaffold_14 - intron 151364-151716 asmbl_12779,asmbl_12782 scaffold_14 - retained_intron 151364-151716 asmbl_12777,asmbl_12781,asmbl_12783 // Retained and Spliced Intron # retained_intron 151364-151904 (orient:-) max_ev_support = 2 # spliced_intron 151364-151904 (orient:-) max_ev_support = 2 scaffold_14 - intron 151364-151904 asmbl_12778,asmbl_12780 scaffold_14 - retained_intron 151364-151904 asmbl_12777,asmbl_12781 // Retained and Spliced Intron # retained_intron 151803-151904 (orient:-) max_ev_support = 2 # spliced_intron 151803-151904 (orient:-) max_ev_support = 1 scaffold_14 - intron 151803-151904 asmbl_12779,asmbl_12782,asmbl_12783 scaffold_14 - retained_intron 151803-151904 asmbl_12777,asmbl_12781 // Exon Skipping and Retention # skipped_exon 151364-151904 (orient:-) max_ev_support = 2 # retained_exon 151717-151802 (orient:-) max_ev_support = 1 scaffold_14 - retained_exons 151717-151802 asmbl_12779,asmbl_12782 scaffold_14 - intron_skips_exon 151364-151904 asmbl_12778,asmbl_12780 // Retained and Spliced Intron # retained_intron 176800-176929 (orient:-) max_ev_support = 1 # spliced_intron 176800-176929 (orient:-) max_ev_support = 2 scaffold_14 - intron 176800-176929 asmbl_12785,asmbl_12786 scaffold_14 - retained_intron 176800-176929 asmbl_12787 // Exon Skipping and Retention # skipped_exon 209003-210779 (orient:-) max_ev_support = 3 # retained_exon 209954-210056 (orient:-) max_ev_support = 3 scaffold_14 - retained_exons 209954-210056 asmbl_12796 scaffold_14 - intron_skips_exon 209003-210779 asmbl_12795 // Retained and Spliced Intron # retained_intron 208851-208933 (orient:-) max_ev_support = 2 # spliced_intron 208851-208933 (orient:-) max_ev_support = 3 scaffold_14 - intron 208851-208933 asmbl_12795,asmbl_12796,asmbl_12797 scaffold_14 - retained_intron 208851-208933 asmbl_12799 // Retained and Spliced Intron # retained_intron 217693-217891 (orient:-) max_ev_support = 2 # spliced_intron 217693-217891 (orient:-) max_ev_support = 1 scaffold_14 - intron 217693-217891 asmbl_12809 scaffold_14 - retained_intron 217693-217891 asmbl_12805,asmbl_12806,asmbl_12807,asmbl_12808 // Retained and Spliced Intron # retained_intron 218317-218775 (orient:-) max_ev_support = 2 # spliced_intron 218317-218775 (orient:-) max_ev_support = 2 scaffold_14 - intron 218317-218775 asmbl_12807,asmbl_12809 scaffold_14 - retained_intron 218317-218775 asmbl_12805,asmbl_12806,asmbl_12808 // Exon Skipping and Retention # skipped_exon 219174-220726 (orient:-) max_ev_support = 2 # retained_exon 219872-220576 (orient:-) max_ev_support = 2 scaffold_14 - retained_exons 219872-220576 asmbl_12805 scaffold_14 - intron_skips_exon 219174-220726 asmbl_12806,asmbl_12807,asmbl_12808,asmbl_12809 // Retained and Spliced Intron # retained_intron 218091-218231 (orient:-) max_ev_support = 1 # spliced_intron 218091-218231 (orient:-) max_ev_support = 2 scaffold_14 - intron 218091-218231 asmbl_12805,asmbl_12806,asmbl_12807,asmbl_12809 scaffold_14 - retained_intron 218091-218231 asmbl_12808 // Exon Skipping and Retention # skipped_exon 658583-660368 (orient:-) max_ev_support = 2 # retained_exon 659132-659204 (orient:-) max_ev_support = 3 scaffold_14 - retained_exons 659132-659204 asmbl_12838 scaffold_14 - intron_skips_exon 658583-660368 asmbl_12840 // Retained and Spliced Intron # retained_intron 1130983-1131079 (orient:-) max_ev_support = 2 # spliced_intron 1130983-1131079 (orient:-) max_ev_support = 3 scaffold_14 - intron 1130983-1131079 asmbl_12861,asmbl_12862 scaffold_14 - retained_intron 1130983-1131079 asmbl_12863 // Retained and Spliced Intron # retained_intron 1361497-1361623 (orient:-) max_ev_support = 2 # spliced_intron 1361497-1361623 (orient:-) max_ev_support = 1 scaffold_14 - intron 1361497-1361623 asmbl_12870 scaffold_14 - retained_intron 1361497-1361623 asmbl_12869 // Exon Skipping and Retention # skipped_exon 1375462-1376687 (orient:-) max_ev_support = 1 # retained_exon 1376332-1376480 (orient:-) max_ev_support = 2 scaffold_14 - retained_exons 1376332-1376480 asmbl_12875,asmbl_12876,asmbl_12878 scaffold_14 - intron_skips_exon 1375462-1376687 asmbl_12879 // Retained and Spliced Intron # retained_intron 1590384-1590520 (orient:-) max_ev_support = 1 # spliced_intron 1590384-1590520 (orient:-) max_ev_support = 1 scaffold_14 - intron 1590384-1590520 asmbl_12899 scaffold_14 - retained_intron 1590384-1590520 asmbl_12897 // Exon Skipping and Retention # skipped_exon 1590384-1591852 (orient:-) max_ev_support = 2 # retained_exon 1590521-1590858 (orient:-) max_ev_support = 1 scaffold_14 - retained_exons 1590521-1590858 asmbl_12899 scaffold_14 - intron_skips_exon 1590384-1591852 asmbl_12894,asmbl_12895,asmbl_12898 // Exon Skipping and Retention # skipped_exon 1590407-1591852 (orient:-) max_ev_support = 1 # retained_exon 1590521-1590858 (orient:-) max_ev_support = 1 scaffold_14 - retained_exons 1590521-1590858 asmbl_12899 scaffold_14 - intron_skips_exon 1590407-1591852 asmbl_12900 // Retained and Spliced Intron # retained_intron 1715156-1715260 (orient:-) max_ev_support = 1 # spliced_intron 1715156-1715260 (orient:-) max_ev_support = 3 scaffold_14 - intron 1715156-1715260 asmbl_12913 scaffold_14 - retained_intron 1715156-1715260 asmbl_12914 // Retained and Spliced Intron # retained_intron 1715347-1715448 (orient:-) max_ev_support = 1 # spliced_intron 1715347-1715448 (orient:-) max_ev_support = 3 scaffold_14 - intron 1715347-1715448 asmbl_12913 scaffold_14 - retained_intron 1715347-1715448 asmbl_12914 // Retained and Spliced Intron # retained_intron 2122954-2123146 (orient:-) max_ev_support = 2 # spliced_intron 2122954-2123146 (orient:-) max_ev_support = 2 scaffold_14 - intron 2122954-2123146 asmbl_12919,asmbl_12922 scaffold_14 - retained_intron 2122954-2123146 asmbl_12920 // Retained and Spliced Intron # retained_intron 2128876-2129082 (orient:-) max_ev_support = 1 # spliced_intron 2128876-2129082 (orient:-) max_ev_support = 2 scaffold_14 - intron 2128876-2129082 asmbl_12919 scaffold_14 - retained_intron 2128876-2129082 asmbl_12922 // Exon Skipping and Retention # skipped_exon 2247236-2247917 (orient:-) max_ev_support = 2 # retained_exon 2247331-2247578 (orient:-) max_ev_support = 3 scaffold_14 - retained_exons 2247331-2247578 asmbl_12924,asmbl_12925 scaffold_14 - intron_skips_exon 2247236-2247917 asmbl_12926,asmbl_12927 // Retained and Spliced Intron # retained_intron 2263195-2263335 (orient:-) max_ev_support = 1 # spliced_intron 2263195-2263335 (orient:-) max_ev_support = 2 scaffold_14 - intron 2263195-2263335 asmbl_12929 scaffold_14 - retained_intron 2263195-2263335 asmbl_12930 // Retained and Spliced Intron # retained_intron 2263794-2264034 (orient:-) max_ev_support = 1 # spliced_intron 2263794-2264034 (orient:-) max_ev_support = 2 scaffold_14 - intron 2263794-2264034 asmbl_12929 scaffold_14 - retained_intron 2263794-2264034 asmbl_12930 // Retained and Spliced Intron # retained_intron 2373729-2374187 (orient:-) max_ev_support = 2 # spliced_intron 2373729-2374187 (orient:-) max_ev_support = 1 scaffold_14 - intron 2373729-2374187 asmbl_12937,asmbl_12939,asmbl_12940,asmbl_12941 scaffold_14 - retained_intron 2373729-2374187 asmbl_12934,asmbl_12935,asmbl_12936,asmbl_12938 // Retained and Spliced Intron # retained_intron 2376089-2376796 (orient:-) max_ev_support = 3 # spliced_intron 2376089-2376796 (orient:-) max_ev_support = 1 scaffold_14 - intron 2376089-2376796 asmbl_12938,asmbl_12939,asmbl_12940,asmbl_12941 scaffold_14 - retained_intron 2376089-2376796 asmbl_12934,asmbl_12935,asmbl_12936,asmbl_12937 // Exon Skipping and Retention # skipped_exon 2374520-2375890 (orient:-) max_ev_support = 1 # retained_exon 2375413-2375442 (orient:-) max_ev_support = 1 scaffold_14 - retained_exons 2375413-2375442 asmbl_12935,asmbl_12937,asmbl_12939,asmbl_12941 scaffold_14 - intron_skips_exon 2374520-2375890 asmbl_12934,asmbl_12938 // Retained and Spliced Intron # retained_intron 2374225-2374349 (orient:-) max_ev_support = 1 # spliced_intron 2374225-2374349 (orient:-) max_ev_support = 1 scaffold_14 - intron 2374225-2374349 asmbl_12934,asmbl_12935,asmbl_12937,asmbl_12939,asmbl_12941 scaffold_14 - retained_intron 2374225-2374349 asmbl_12936,asmbl_12938,asmbl_12940 // Retained and Spliced Intron # retained_intron 2374520-2375412 (orient:-) max_ev_support = 1 # spliced_intron 2374520-2375412 (orient:-) max_ev_support = 1 scaffold_14 - intron 2374520-2375412 asmbl_12935,asmbl_12937,asmbl_12939,asmbl_12941 scaffold_14 - retained_intron 2374520-2375412 asmbl_12936,asmbl_12940 // Retained and Spliced Intron # retained_intron 2374520-2375890 (orient:-) max_ev_support = 1 # spliced_intron 2374520-2375890 (orient:-) max_ev_support = 1 scaffold_14 - intron 2374520-2375890 asmbl_12934,asmbl_12938 scaffold_14 - retained_intron 2374520-2375890 asmbl_12936,asmbl_12940 // Retained and Spliced Intron # retained_intron 2375443-2375890 (orient:-) max_ev_support = 1 # spliced_intron 2375443-2375890 (orient:-) max_ev_support = 1 scaffold_14 - intron 2375443-2375890 asmbl_12935,asmbl_12937,asmbl_12939,asmbl_12941 scaffold_14 - retained_intron 2375443-2375890 asmbl_12936,asmbl_12940 // Retained and Spliced Intron # retained_intron 2600144-2600258 (orient:-) max_ev_support = 3 # spliced_intron 2600144-2600258 (orient:-) max_ev_support = 1 scaffold_14 - intron 2600144-2600258 asmbl_12966 scaffold_14 - retained_intron 2600144-2600258 asmbl_12965 // Retained and Spliced Intron # retained_intron 2886580-2886644 (orient:-) max_ev_support = 2 # spliced_intron 2886580-2886644 (orient:-) max_ev_support = 2 scaffold_14 - intron 2886580-2886644 asmbl_12979,asmbl_12982 scaffold_14 - retained_intron 2886580-2886644 asmbl_12980,asmbl_12981,asmbl_12983 // Retained and Spliced Intron # retained_intron 2888654-2888781 (orient:-) max_ev_support = 1 # spliced_intron 2888654-2888781 (orient:-) max_ev_support = 2 scaffold_14 - intron 2888654-2888781 asmbl_12979,asmbl_12980 scaffold_14 - retained_intron 2888654-2888781 asmbl_12984 // Retained and Spliced Intron # retained_intron 2919342-2919421 (orient:-) max_ev_support = 1 # spliced_intron 2919342-2919421 (orient:-) max_ev_support = 2 scaffold_14 - intron 2919342-2919421 asmbl_12991 scaffold_14 - retained_intron 2919342-2919421 asmbl_12992 // Retained and Spliced Intron # retained_intron 2940933-2941376 (orient:-) max_ev_support = 3 # spliced_intron 2940933-2941376 (orient:-) max_ev_support = 2 scaffold_14 - intron 2940933-2941376 asmbl_12994,asmbl_12995 scaffold_14 - retained_intron 2940933-2941376 asmbl_12993 // Exon Skipping and Retention # skipped_exon 3172564-3173432 (orient:-) max_ev_support = 2 # retained_exon 3173132-3173282 (orient:-) max_ev_support = 2 scaffold_14 - retained_exons 3173132-3173282 asmbl_12997 scaffold_14 - intron_skips_exon 3172564-3173432 asmbl_12998 // Retained and Spliced Intron # retained_intron 3364505-3364903 (orient:-) max_ev_support = 3 # spliced_intron 3364505-3364903 (orient:-) max_ev_support = 2 scaffold_14 - intron 3364505-3364903 asmbl_13004 scaffold_14 - retained_intron 3364505-3364903 asmbl_13003 // Exon Skipping and Retention # skipped_exon 3550295-3551903 (orient:-) max_ev_support = 2 # retained_exon 3551269-3551337 (orient:-) max_ev_support = 2 scaffold_14 - retained_exons 3551269-3551337 asmbl_13022,asmbl_13024 scaffold_14 - intron_skips_exon 3550295-3551903 asmbl_13023 // Exon Skipping and Retention # skipped_exon 3551338-3552180 (orient:-) max_ev_support = 1 # retained_exon 3551904-3551989 (orient:-) max_ev_support = 2 scaffold_14 - retained_exons 3551904-3551989 asmbl_13022,asmbl_13023 scaffold_14 - intron_skips_exon 3551338-3552180 asmbl_13024 // Exon Skipping and Retention # skipped_exon 4112821-4113937 (orient:-) max_ev_support = 3 # retained_exon 4113488-4113544 (orient:-) max_ev_support = 3 scaffold_14 - retained_exons 4113488-4113544 asmbl_13036 scaffold_14 - intron_skips_exon 4112821-4113937 asmbl_13035 // Retained and Spliced Intron # retained_intron 4699179-4699324 (orient:-) max_ev_support = 3 # spliced_intron 4699179-4699324 (orient:-) max_ev_support = 1 scaffold_14 - intron 4699179-4699324 asmbl_13065 scaffold_14 - retained_intron 4699179-4699324 asmbl_13064 // Retained and Spliced Intron # retained_intron 4780275-4781266 (orient:-) max_ev_support = 1 # spliced_intron 4780275-4781266 (orient:-) max_ev_support = 2 scaffold_14 - intron 4780275-4781266 asmbl_13071,asmbl_13073 scaffold_14 - retained_intron 4780275-4781266 asmbl_13072,asmbl_13074 // Retained and Spliced Intron # retained_intron 4782236-4782441 (orient:-) max_ev_support = 1 # spliced_intron 4782236-4782441 (orient:-) max_ev_support = 2 scaffold_14 - intron 4782236-4782441 asmbl_13071,asmbl_13072 scaffold_14 - retained_intron 4782236-4782441 asmbl_13073,asmbl_13074 // Retained and Spliced Intron # retained_intron 5790758-5790843 (orient:-) max_ev_support = 2 # spliced_intron 5790758-5790843 (orient:-) max_ev_support = 2 scaffold_14 - intron 5790758-5790843 asmbl_13092 scaffold_14 - retained_intron 5790758-5790843 asmbl_13093 // Retained and Spliced Intron # retained_intron 5790911-5791036 (orient:-) max_ev_support = 2 # spliced_intron 5790911-5791036 (orient:-) max_ev_support = 2 scaffold_14 - intron 5790911-5791036 asmbl_13092,asmbl_13094 scaffold_14 - retained_intron 5790911-5791036 asmbl_13093 // Retained and Spliced Intron # retained_intron 5791100-5791212 (orient:-) max_ev_support = 1 # spliced_intron 5791100-5791212 (orient:-) max_ev_support = 2 scaffold_14 - intron 5791100-5791212 asmbl_13092 scaffold_14 - retained_intron 5791100-5791212 asmbl_13094 // Retained and Spliced Intron # retained_intron 6427617-6427975 (orient:-) max_ev_support = 1 # spliced_intron 6427617-6427975 (orient:-) max_ev_support = 2 scaffold_14 - intron 6427617-6427975 asmbl_13128 scaffold_14 - retained_intron 6427617-6427975 asmbl_13129 // Exon Skipping and Retention # skipped_exon 6435038-6437524 (orient:-) max_ev_support = 2 # retained_exon 6437202-6437324 (orient:-) max_ev_support = 2 scaffold_14 - retained_exons 6437202-6437324 asmbl_13131 scaffold_14 - intron_skips_exon 6435038-6437524 asmbl_13132 // Exon Skipping and Retention # skipped_exon 6449782-6450530 (orient:-) max_ev_support = 1 # retained_exon 6449925-6450069 (orient:-) max_ev_support = 2 scaffold_14 - retained_exons 6449925-6450069 asmbl_13134 scaffold_14 - intron_skips_exon 6449782-6450530 asmbl_13135 // Retained and Spliced Intron # retained_intron 6553331-6553641 (orient:-) max_ev_support = 1 # spliced_intron 6553331-6553641 (orient:-) max_ev_support = 1 scaffold_14 - intron 6553331-6553641 asmbl_13140 scaffold_14 - retained_intron 6553331-6553641 asmbl_13141 // Retained and Spliced Intron # retained_intron 6987427-6987843 (orient:-) max_ev_support = 1 # spliced_intron 6987427-6987843 (orient:-) max_ev_support = 2 scaffold_14 - intron 6987427-6987843 asmbl_13170 scaffold_14 - retained_intron 6987427-6987843 asmbl_13172 // Retained and Spliced Intron # retained_intron 7444437-7444909 (orient:-) max_ev_support = 3 # spliced_intron 7444437-7444909 (orient:-) max_ev_support = 3 scaffold_14 - intron 7444437-7444909 asmbl_13200 scaffold_14 - retained_intron 7444437-7444909 asmbl_13201 // Exon Skipping and Retention # skipped_exon 7460431-7460908 (orient:-) max_ev_support = 1 # retained_exon 7460506-7460602 (orient:-) max_ev_support = 2 scaffold_14 - retained_exons 7460506-7460602 asmbl_13206,asmbl_13207 scaffold_14 - intron_skips_exon 7460431-7460908 asmbl_13208 // Retained and Spliced Intron # retained_intron 7463163-7463252 (orient:-) max_ev_support = 1 # spliced_intron 7463163-7463252 (orient:-) max_ev_support = 1 scaffold_14 - intron 7463163-7463252 asmbl_13207 scaffold_14 - retained_intron 7463163-7463252 asmbl_13206 // Retained and Spliced Intron # retained_intron 7480485-7480705 (orient:-) max_ev_support = 4 # spliced_intron 7480485-7480705 (orient:-) max_ev_support = 1 scaffold_14 - intron 7480485-7480705 asmbl_13212 scaffold_14 - retained_intron 7480485-7480705 asmbl_13209,asmbl_13210 // Retained and Spliced Intron # retained_intron 7506677-7507029 (orient:-) max_ev_support = 1 # spliced_intron 7506677-7507029 (orient:-) max_ev_support = 2 scaffold_14 - intron 7506677-7507029 asmbl_13215,asmbl_13216,asmbl_13218,asmbl_13219,asmbl_13220 scaffold_14 - retained_intron 7506677-7507029 asmbl_13217,asmbl_13221 // Retained and Spliced Intron # retained_intron 7508898-7509085 (orient:-) max_ev_support = 1 # spliced_intron 7508898-7509085 (orient:-) max_ev_support = 2 scaffold_14 - intron 7508898-7509085 asmbl_13215,asmbl_13217,asmbl_13219 scaffold_14 - retained_intron 7508898-7509085 asmbl_13218,asmbl_13220 // Exon Skipping and Retention # skipped_exon 7564739-7566078 (orient:-) max_ev_support = 2 # retained_exon 7565593-7565729 (orient:-) max_ev_support = 1 scaffold_14 - retained_exons 7565593-7565729 asmbl_13226 scaffold_14 - intron_skips_exon 7564739-7566078 asmbl_13225 // Exon Skipping and Retention # skipped_exon 8215090-8216517 (orient:-) max_ev_support = 2 # retained_exon 8216075-8216119 (orient:-) max_ev_support = 2 scaffold_14 - retained_exons 8216075-8216119 asmbl_13252,asmbl_13254 scaffold_14 - intron_skips_exon 8215090-8216517 asmbl_13251,asmbl_13255,asmbl_13256 // Exon Skipping and Retention # skipped_exon 8215090-8216523 (orient:-) max_ev_support = 1 # retained_exon 8216075-8216119 (orient:-) max_ev_support = 2 scaffold_14 - retained_exons 8216075-8216119 asmbl_13252,asmbl_13254 scaffold_14 - intron_skips_exon 8215090-8216523 asmbl_13257 // Retained and Spliced Intron # retained_intron 8213726-8214121 (orient:-) max_ev_support = 1 # spliced_intron 8213726-8214121 (orient:-) max_ev_support = 2 scaffold_14 - intron 8213726-8214121 asmbl_13251,asmbl_13252,asmbl_13256,asmbl_13257,asmbl_13258,asmbl_13259 scaffold_14 - retained_intron 8213726-8214121 asmbl_13254,asmbl_13255 // Retained and Spliced Intron # retained_intron 8212830-8213288 (orient:-) max_ev_support = 1 # spliced_intron 8212830-8213288 (orient:-) max_ev_support = 2 scaffold_14 - intron 8212830-8213288 asmbl_13251,asmbl_13252,asmbl_13254,asmbl_13255,asmbl_13257,asmbl_13258,asmbl_13259 scaffold_14 - retained_intron 8212830-8213288 asmbl_13256 // Exon Skipping and Retention # skipped_exon 8231446-8232235 (orient:-) max_ev_support = 2 # retained_exon 8231791-8231817 (orient:-) max_ev_support = 1 scaffold_14 - retained_exons 8231791-8231817 asmbl_13263 scaffold_14 - intron_skips_exon 8231446-8232235 asmbl_13261,asmbl_13262 // Retained and Spliced Intron # retained_intron 8295304-8295419 (orient:-) max_ev_support = 2 # spliced_intron 8295304-8295419 (orient:-) max_ev_support = 1 scaffold_14 - intron 8295304-8295419 asmbl_13284 scaffold_14 - retained_intron 8295304-8295419 asmbl_13282,asmbl_13283 // Retained and Spliced Intron # retained_intron 8330057-8330148 (orient:-) max_ev_support = 1 # spliced_intron 8330057-8330148 (orient:-) max_ev_support = 2 scaffold_14 - intron 8330057-8330148 asmbl_13286 scaffold_14 - retained_intron 8330057-8330148 asmbl_13287 // Retained and Spliced Intron # retained_intron 8338998-8339359 (orient:-) max_ev_support = 1 # spliced_intron 8338998-8339359 (orient:-) max_ev_support = 2 scaffold_14 - intron 8338998-8339359 asmbl_13288 scaffold_14 - retained_intron 8338998-8339359 asmbl_13289 // Retained and Spliced Intron # retained_intron 8371335-8371512 (orient:-) max_ev_support = 1 # spliced_intron 8371335-8371512 (orient:-) max_ev_support = 3 scaffold_14 - intron 8371335-8371512 asmbl_13296 scaffold_14 - retained_intron 8371335-8371512 asmbl_13297 // Retained and Spliced Intron # retained_intron 8405603-8405746 (orient:-) max_ev_support = 2 # spliced_intron 8405603-8405746 (orient:-) max_ev_support = 1 scaffold_14 - intron 8405603-8405746 asmbl_13308,asmbl_13309 scaffold_14 - retained_intron 8405603-8405746 asmbl_13307,asmbl_13310 // Retained and Spliced Intron # retained_intron 8452011-8452120 (orient:-) max_ev_support = 1 # spliced_intron 8452011-8452120 (orient:-) max_ev_support = 1 scaffold_14 - intron 8452011-8452120 asmbl_13316 scaffold_14 - retained_intron 8452011-8452120 asmbl_13315 // Exon Skipping and Retention # skipped_exon 8451583-8452120 (orient:-) max_ev_support = 1 # retained_exon 8451918-8452010 (orient:-) max_ev_support = 1 scaffold_14 - retained_exons 8451918-8452010 asmbl_13316 scaffold_14 - intron_skips_exon 8451583-8452120 asmbl_13317 // Exon Skipping and Retention # skipped_exon 8502055-8502712 (orient:-) max_ev_support = 1 # retained_exon 8502348-8502459 (orient:-) max_ev_support = 1 scaffold_14 - retained_exons 8502348-8502459 asmbl_13325 scaffold_14 - intron_skips_exon 8502055-8502712 asmbl_13326 // Retained and Spliced Intron # retained_intron 8610516-8610600 (orient:-) max_ev_support = 2 # spliced_intron 8610516-8610600 (orient:-) max_ev_support = 2 scaffold_14 - intron 8610516-8610600 asmbl_13328,asmbl_13329 scaffold_14 - retained_intron 8610516-8610600 asmbl_13330 // Retained and Spliced Intron # retained_intron 8651388-8651714 (orient:-) max_ev_support = 2 # spliced_intron 8651388-8651714 (orient:-) max_ev_support = 2 scaffold_14 - intron 8651388-8651714 asmbl_13334 scaffold_14 - retained_intron 8651388-8651714 asmbl_13333 // Exon Skipping and Retention # skipped_exon 8695572-8696048 (orient:-) max_ev_support = 1 # retained_exon 8695771-8695878 (orient:-) max_ev_support = 2 scaffold_14 - retained_exons 8695771-8695878 asmbl_13337,asmbl_13339 scaffold_14 - intron_skips_exon 8695572-8696048 asmbl_13338,asmbl_13341 // Retained and Spliced Intron # retained_intron 8694420-8694707 (orient:-) max_ev_support = 1 # spliced_intron 8694420-8694707 (orient:-) max_ev_support = 2 scaffold_14 - intron 8694420-8694707 asmbl_13337,asmbl_13338,asmbl_13340 scaffold_14 - retained_intron 8694420-8694707 asmbl_13339,asmbl_13341 // Retained and Spliced Intron # retained_intron 8695572-8695770 (orient:-) max_ev_support = 1 # spliced_intron 8695572-8695770 (orient:-) max_ev_support = 2 scaffold_14 - intron 8695572-8695770 asmbl_13337,asmbl_13339 scaffold_14 - retained_intron 8695572-8695770 asmbl_13340 // Retained and Spliced Intron # retained_intron 8755233-8755448 (orient:-) max_ev_support = 1 # spliced_intron 8755233-8755448 (orient:-) max_ev_support = 1 scaffold_14 - intron 8755233-8755448 asmbl_13345 scaffold_14 - retained_intron 8755233-8755448 asmbl_13344,asmbl_13346 // Exon Skipping and Retention # skipped_exon 9271820-9273885 (orient:-) max_ev_support = 1 # retained_exon 9272349-9273610 (orient:-) max_ev_support = 3 scaffold_14 - retained_exons 9272349-9272558,9272680-9272763,9273524-9273610 asmbl_13360,asmbl_13362,asmbl_13366 scaffold_14 - intron_skips_exon 9271820-9273885 asmbl_13361 // Exon Skipping and Retention # skipped_exon 9272764-9273885 (orient:-) max_ev_support = 1 # retained_exon 9273524-9273610 (orient:-) max_ev_support = 2 scaffold_14 - retained_exons 9273524-9273610 asmbl_13360,asmbl_13362,asmbl_13366 scaffold_14 - intron_skips_exon 9272764-9273885 asmbl_13363 // Retained and Spliced Intron # retained_intron 9272559-9272679 (orient:-) max_ev_support = 1 # spliced_intron 9272559-9272679 (orient:-) max_ev_support = 2 scaffold_14 - intron 9272559-9272679 asmbl_13360,asmbl_13362,asmbl_13363,asmbl_13364,asmbl_13366,asmbl_13367 scaffold_14 - retained_intron 9272559-9272679 asmbl_13365 // Retained and Spliced Intron # retained_intron 9272764-9273523 (orient:-) max_ev_support = 1 # spliced_intron 9272764-9273523 (orient:-) max_ev_support = 2 scaffold_14 - intron 9272764-9273523 asmbl_13360,asmbl_13362,asmbl_13364,asmbl_13366 scaffold_14 - retained_intron 9272764-9273523 asmbl_13365,asmbl_13367 // Retained and Spliced Intron # retained_intron 9272764-9273885 (orient:-) max_ev_support = 1 # spliced_intron 9272764-9273885 (orient:-) max_ev_support = 1 scaffold_14 - intron 9272764-9273885 asmbl_13363 scaffold_14 - retained_intron 9272764-9273885 asmbl_13365,asmbl_13367 // Retained and Spliced Intron # retained_intron 9273608-9273885 (orient:-) max_ev_support = 1 # spliced_intron 9273608-9273885 (orient:-) max_ev_support = 1 scaffold_14 - intron 9273608-9273885 asmbl_13364 scaffold_14 - retained_intron 9273608-9273885 asmbl_13365,asmbl_13367 // Retained and Spliced Intron # retained_intron 9273611-9273885 (orient:-) max_ev_support = 1 # spliced_intron 9273611-9273885 (orient:-) max_ev_support = 2 scaffold_14 - intron 9273611-9273885 asmbl_13360,asmbl_13362,asmbl_13366 scaffold_14 - retained_intron 9273611-9273885 asmbl_13365,asmbl_13367 // Exon Skipping and Retention # skipped_exon 9287370-9288497 (orient:-) max_ev_support = 2 # retained_exon 9287989-9288015 (orient:-) max_ev_support = 2 scaffold_14 - retained_exons 9287989-9288015 asmbl_13370,asmbl_13372,asmbl_13373,asmbl_13374,asmbl_13375,asmbl_13377 scaffold_14 - intron_skips_exon 9287370-9288497 asmbl_13371,asmbl_13376,asmbl_13378 // Exon Skipping and Retention # skipped_exon 9294804-9297509 (orient:-) max_ev_support = 2 # retained_exon 9296011-9296022 (orient:-) max_ev_support = 2 scaffold_14 - retained_exons 9296011-9296022 asmbl_13371,asmbl_13372,asmbl_13373,asmbl_13378,asmbl_13379 scaffold_14 - intron_skips_exon 9294804-9297509 asmbl_13370,asmbl_13377 // Exon Skipping and Retention # skipped_exon 9294819-9297509 (orient:-) max_ev_support = 1 # retained_exon 9296011-9296022 (orient:-) max_ev_support = 2 scaffold_14 - retained_exons 9296011-9296022 asmbl_13371,asmbl_13372,asmbl_13373,asmbl_13378,asmbl_13379 scaffold_14 - intron_skips_exon 9294819-9297509 asmbl_13375,asmbl_13376 // Retained and Spliced Intron # retained_intron 9506808-9506827 (orient:-) max_ev_support = 1 # spliced_intron 9506808-9506827 (orient:-) max_ev_support = 2 scaffold_14 - intron 9506808-9506827 asmbl_13385 scaffold_14 - retained_intron 9506808-9506827 asmbl_13386 // Exon Skipping and Retention # skipped_exon 10017369-10019893 (orient:-) max_ev_support = 2 # retained_exon 10019033-10019103 (orient:-) max_ev_support = 2 scaffold_14 - retained_exons 10019033-10019103 asmbl_13406 scaffold_14 - intron_skips_exon 10017369-10019893 asmbl_13405 // Exon Skipping and Retention # skipped_exon 10371561-10372201 (orient:-) max_ev_support = 2 # retained_exon 10371698-10371735 (orient:-) max_ev_support = 2 scaffold_14 - retained_exons 10371698-10371735 asmbl_13419 scaffold_14 - intron_skips_exon 10371561-10372201 asmbl_13418 // Retained and Spliced Intron # retained_intron 10410634-10411783 (orient:-) max_ev_support = 3 # spliced_intron 10410634-10411783 (orient:-) max_ev_support = 1 scaffold_14 - intron 10410634-10411783 asmbl_13422 scaffold_14 - retained_intron 10410634-10411783 asmbl_13420,asmbl_13421 // Exon Skipping and Retention # skipped_exon 10424625-10426296 (orient:-) max_ev_support = 1 # retained_exon 10425045-10425086 (orient:-) max_ev_support = 3 scaffold_14 - retained_exons 10425045-10425086 asmbl_13423 scaffold_14 - intron_skips_exon 10424625-10426296 asmbl_13424 // Exon Skipping and Retention # skipped_exon 11139409-11139772 (orient:-) max_ev_support = 2 # retained_exon 11139487-11139590 (orient:-) max_ev_support = 2 scaffold_14 - retained_exons 11139487-11139590 asmbl_13449 scaffold_14 - intron_skips_exon 11139409-11139772 asmbl_13447 // Retained and Spliced Intron # retained_intron 11139409-11139486 (orient:-) max_ev_support = 1 # spliced_intron 11139409-11139486 (orient:-) max_ev_support = 2 scaffold_14 - intron 11139409-11139486 asmbl_13449 scaffold_14 - retained_intron 11139409-11139486 asmbl_13450 // Exon Skipping and Retention # skipped_exon 11220457-11221809 (orient:-) max_ev_support = 2 # retained_exon 11221099-11221501 (orient:-) max_ev_support = 1 scaffold_14 - retained_exons 11221099-11221128,11221439-11221501 asmbl_13457 scaffold_14 - intron_skips_exon 11220457-11221809 asmbl_13456 // Retained and Spliced Intron # retained_intron 11391513-11391625 (orient:-) max_ev_support = 2 # spliced_intron 11391513-11391625 (orient:-) max_ev_support = 3 scaffold_14 - intron 11391513-11391625 asmbl_13476 scaffold_14 - retained_intron 11391513-11391625 asmbl_13477,asmbl_13478,asmbl_13479,asmbl_13481 // Retained and Spliced Intron # retained_intron 11388081-11388304 (orient:-) max_ev_support = 1 # spliced_intron 11388081-11388304 (orient:-) max_ev_support = 2 scaffold_14 - intron 11388081-11388304 asmbl_13476,asmbl_13477,asmbl_13478 scaffold_14 - retained_intron 11388081-11388304 asmbl_13479,asmbl_13481 // Retained and Spliced Intron # retained_intron 11386909-11387002 (orient:-) max_ev_support = 1 # spliced_intron 11386909-11387002 (orient:-) max_ev_support = 2 scaffold_14 - intron 11386909-11387002 asmbl_13476,asmbl_13477,asmbl_13479 scaffold_14 - retained_intron 11386909-11387002 asmbl_13480 // Retained and Spliced Intron # retained_intron 11386935-11387002 (orient:-) max_ev_support = 1 # spliced_intron 11386935-11387002 (orient:-) max_ev_support = 2 scaffold_14 - intron 11386935-11387002 asmbl_13478 scaffold_14 - retained_intron 11386935-11387002 asmbl_13480 // Retained and Spliced Intron # retained_intron 11569194-11569328 (orient:-) max_ev_support = 1 # spliced_intron 11569194-11569328 (orient:-) max_ev_support = 2 scaffold_14 - intron 11569194-11569328 asmbl_13493 scaffold_14 - retained_intron 11569194-11569328 asmbl_13495 // Retained and Spliced Intron # retained_intron 11572188-11573625 (orient:-) max_ev_support = 2 # spliced_intron 11572188-11573625 (orient:-) max_ev_support = 2 scaffold_14 - intron 11572188-11573625 asmbl_13499 scaffold_14 - retained_intron 11572188-11573625 asmbl_13496,asmbl_13497,asmbl_13498 // Retained and Spliced Intron # retained_intron 11572188-11574063 (orient:-) max_ev_support = 4 # spliced_intron 11572188-11574063 (orient:-) max_ev_support = 1 scaffold_14 - intron 11572188-11574063 asmbl_13501 scaffold_14 - retained_intron 11572188-11574063 asmbl_13496,asmbl_13497 // Retained and Spliced Intron # retained_intron 11573661-11574063 (orient:-) max_ev_support = 3 # spliced_intron 11573661-11574063 (orient:-) max_ev_support = 2 scaffold_14 - intron 11573661-11574063 asmbl_13498,asmbl_13499 scaffold_14 - retained_intron 11573661-11574063 asmbl_13496,asmbl_13497 // Retained and Spliced Intron # retained_intron 11574210-11574361 (orient:-) max_ev_support = 3 # spliced_intron 11574210-11574361 (orient:-) max_ev_support = 2 scaffold_14 - intron 11574210-11574361 asmbl_13497,asmbl_13498,asmbl_13499,asmbl_13501 scaffold_14 - retained_intron 11574210-11574361 asmbl_13496 // Exon Skipping and Retention # skipped_exon 11572188-11574063 (orient:-) max_ev_support = 1 # retained_exon 11573626-11573660 (orient:-) max_ev_support = 2 scaffold_14 - retained_exons 11573626-11573660 asmbl_13499 scaffold_14 - intron_skips_exon 11572188-11574063 asmbl_13501 // Exon Skipping and Retention # skipped_exon 11664176-11665506 (orient:-) max_ev_support = 1 # retained_exon 11664755-11665268 (orient:-) max_ev_support = 2 scaffold_14 - retained_exons 11664755-11664826,11665230-11665268 asmbl_13511,asmbl_13512,asmbl_13513 scaffold_14 - intron_skips_exon 11664176-11665506 asmbl_13514 // Exon Skipping and Retention # skipped_exon 11663691-11664754 (orient:-) max_ev_support = 2 # retained_exon 11664104-11664175 (orient:-) max_ev_support = 1 scaffold_14 - retained_exons 11664104-11664175 asmbl_13514 scaffold_14 - intron_skips_exon 11663691-11664754 asmbl_13511,asmbl_13512,asmbl_13513 // Retained and Spliced Intron # retained_intron 11676499-11676859 (orient:-) max_ev_support = 2 # spliced_intron 11676499-11676859 (orient:-) max_ev_support = 2 scaffold_14 - intron 11676499-11676859 asmbl_13520 scaffold_14 - retained_intron 11676499-11676859 asmbl_13519 // Retained and Spliced Intron # retained_intron 11676499-11677256 (orient:-) max_ev_support = 2 # spliced_intron 11676499-11677256 (orient:-) max_ev_support = 2 scaffold_14 - intron 11676499-11677256 asmbl_13518 scaffold_14 - retained_intron 11676499-11677256 asmbl_13519 // Retained and Spliced Intron # retained_intron 11676922-11677256 (orient:-) max_ev_support = 2 # spliced_intron 11676922-11677256 (orient:-) max_ev_support = 2 scaffold_14 - intron 11676922-11677256 asmbl_13520 scaffold_14 - retained_intron 11676922-11677256 asmbl_13519 // Exon Skipping and Retention # skipped_exon 11676499-11677256 (orient:-) max_ev_support = 2 # retained_exon 11676860-11676921 (orient:-) max_ev_support = 2 scaffold_14 - retained_exons 11676860-11676921 asmbl_13520 scaffold_14 - intron_skips_exon 11676499-11677256 asmbl_13518 // Exon Skipping and Retention # skipped_exon 11688000-11688456 (orient:-) max_ev_support = 1 # retained_exon 11688176-11688278 (orient:-) max_ev_support = 3 scaffold_14 - retained_exons 11688176-11688278 asmbl_13521,asmbl_13522,asmbl_13523 scaffold_14 - intron_skips_exon 11688000-11688456 asmbl_13525 // Retained and Spliced Intron # retained_intron 11686951-11687213 (orient:-) max_ev_support = 1 # spliced_intron 11686951-11687213 (orient:-) max_ev_support = 2 scaffold_14 - intron 11686951-11687213 asmbl_13521,asmbl_13523,asmbl_13525 scaffold_14 - retained_intron 11686951-11687213 asmbl_13522 // Retained and Spliced Intron # retained_intron 11685485-11685674 (orient:-) max_ev_support = 2 # spliced_intron 11685485-11685674 (orient:-) max_ev_support = 2 scaffold_14 - intron 11685485-11685674 asmbl_13521,asmbl_13522,asmbl_13523,asmbl_13525 scaffold_14 - retained_intron 11685485-11685674 asmbl_13524 // Retained and Spliced Intron # retained_intron 11759003-11759212 (orient:-) max_ev_support = 2 # spliced_intron 11759003-11759212 (orient:-) max_ev_support = 2 scaffold_14 - intron 11759003-11759212 asmbl_13530 scaffold_14 - retained_intron 11759003-11759212 asmbl_13528,asmbl_13529 // Retained and Spliced Intron # retained_intron 11764873-11765001 (orient:-) max_ev_support = 1 # spliced_intron 11764873-11765001 (orient:-) max_ev_support = 2 scaffold_14 - intron 11764873-11765001 asmbl_13531 scaffold_14 - retained_intron 11764873-11765001 asmbl_13532 // Retained and Spliced Intron # retained_intron 11792025-11792322 (orient:-) max_ev_support = 3 # spliced_intron 11792025-11792322 (orient:-) max_ev_support = 2 scaffold_14 - intron 11792025-11792322 asmbl_13536 scaffold_14 - retained_intron 11792025-11792322 asmbl_13535 // Exon Skipping and Retention # skipped_exon 12219597-12221273 (orient:-) max_ev_support = 2 # retained_exon 12220215-12220349 (orient:-) max_ev_support = 1 scaffold_14 - retained_exons 12220215-12220349 asmbl_13557 scaffold_14 - intron_skips_exon 12219597-12221273 asmbl_13555 // Retained and Spliced Intron # retained_intron 12628130-12628260 (orient:-) max_ev_support = 1 # spliced_intron 12628130-12628260 (orient:-) max_ev_support = 3 scaffold_14 - intron 12628130-12628260 asmbl_13579,asmbl_13580,asmbl_13581,asmbl_13582,asmbl_13586 scaffold_14 - retained_intron 12628130-12628260 asmbl_13583,asmbl_13584,asmbl_13587 // Retained and Spliced Intron # retained_intron 12627333-12627465 (orient:-) max_ev_support = 1 # spliced_intron 12627333-12627465 (orient:-) max_ev_support = 3 scaffold_14 - intron 12627333-12627465 asmbl_13579,asmbl_13580,asmbl_13581,asmbl_13582,asmbl_13583,asmbl_13584,asmbl_13586,asmbl_13587 scaffold_14 - retained_intron 12627333-12627465 asmbl_13585 // Retained and Spliced Intron # retained_intron 12707267-12707317 (orient:-) max_ev_support = 1 # spliced_intron 12707267-12707317 (orient:-) max_ev_support = 1 scaffold_14 - intron 12707267-12707317 asmbl_13589 scaffold_14 - retained_intron 12707267-12707317 asmbl_13590 // Retained and Spliced Intron # retained_intron 12752822-12753014 (orient:-) max_ev_support = 2 # spliced_intron 12752822-12753014 (orient:-) max_ev_support = 1 scaffold_14 - intron 12752822-12753014 asmbl_13596,asmbl_13603 scaffold_14 - retained_intron 12752822-12753014 asmbl_13595,asmbl_13597,asmbl_13598,asmbl_13602 // Retained and Spliced Intron # retained_intron 12755086-12755745 (orient:-) max_ev_support = 1 # spliced_intron 12755086-12755745 (orient:-) max_ev_support = 1 scaffold_14 - intron 12755086-12755745 asmbl_13596,asmbl_13598 scaffold_14 - retained_intron 12755086-12755745 asmbl_13595,asmbl_13602,asmbl_13603 // Exon Skipping and Retention # skipped_exon 12761801-12763255 (orient:-) max_ev_support = 1 # retained_exon 12763044-12763082 (orient:-) max_ev_support = 2 scaffold_14 - retained_exons 12763044-12763082 asmbl_13596,asmbl_13601 scaffold_14 - intron_skips_exon 12761801-12763255 asmbl_13600,asmbl_13604 // Retained and Spliced Intron # retained_intron 12751805-12752771 (orient:-) max_ev_support = 1 # spliced_intron 12751805-12752771 (orient:-) max_ev_support = 2 scaffold_14 - intron 12751805-12752771 asmbl_13595,asmbl_13596,asmbl_13598,asmbl_13603 scaffold_14 - retained_intron 12751805-12752771 asmbl_13597,asmbl_13602 // Retained and Spliced Intron # retained_intron 12753400-12753507 (orient:-) max_ev_support = 1 # spliced_intron 12753400-12753507 (orient:-) max_ev_support = 1 scaffold_14 - intron 12753400-12753507 asmbl_13595,asmbl_13596,asmbl_13597,asmbl_13602,asmbl_13603 scaffold_14 - retained_intron 12753400-12753507 asmbl_13598 // Exon Skipping and Retention # skipped_exon 12807539-12807951 (orient:-) max_ev_support = 2 # retained_exon 12807676-12807719 (orient:-) max_ev_support = 1 scaffold_14 - retained_exons 12807676-12807719 asmbl_13608 scaffold_14 - intron_skips_exon 12807539-12807951 asmbl_13607 // Retained and Spliced Intron # retained_intron 12815903-12816062 (orient:-) max_ev_support = 2 # spliced_intron 12815903-12816062 (orient:-) max_ev_support = 2 scaffold_14 - intron 12815903-12816062 asmbl_13611 scaffold_14 - retained_intron 12815903-12816062 asmbl_13610 // Retained and Spliced Intron # retained_intron 12823398-12823517 (orient:-) max_ev_support = 2 # spliced_intron 12823398-12823517 (orient:-) max_ev_support = 2 scaffold_14 - intron 12823398-12823517 asmbl_13614,asmbl_13615,asmbl_13616,asmbl_13617,asmbl_13618,asmbl_13619 scaffold_14 - retained_intron 12823398-12823517 asmbl_13613 // Retained and Spliced Intron # retained_intron 12824418-12824705 (orient:-) max_ev_support = 1 # spliced_intron 12824418-12824705 (orient:-) max_ev_support = 2 scaffold_14 - intron 12824418-12824705 asmbl_13614,asmbl_13615,asmbl_13616 scaffold_14 - retained_intron 12824418-12824705 asmbl_13618 // Retained and Spliced Intron # retained_intron 12824418-12824716 (orient:-) max_ev_support = 1 # spliced_intron 12824418-12824716 (orient:-) max_ev_support = 2 scaffold_14 - intron 12824418-12824716 asmbl_13613,asmbl_13619 scaffold_14 - retained_intron 12824418-12824716 asmbl_13618 // Retained and Spliced Intron # retained_intron 14251277-14251622 (orient:-) max_ev_support = 4 # spliced_intron 14251277-14251622 (orient:-) max_ev_support = 2 scaffold_14 - intron 14251277-14251622 asmbl_13684 scaffold_14 - retained_intron 14251277-14251622 asmbl_13683 // Retained and Spliced Intron # retained_intron 14545904-14546225 (orient:-) max_ev_support = 3 # spliced_intron 14545904-14546225 (orient:-) max_ev_support = 2 scaffold_14 - intron 14545904-14546225 asmbl_13692 scaffold_14 - retained_intron 14545904-14546225 asmbl_13691 // Exon Skipping and Retention # skipped_exon 15345450-15346877 (orient:-) max_ev_support = 3 # retained_exon 15346297-15346341 (orient:-) max_ev_support = 3 scaffold_14 - retained_exons 15346297-15346341 asmbl_13711 scaffold_14 - intron_skips_exon 15345450-15346877 asmbl_13712 // Retained and Spliced Intron # retained_intron 15346342-15346877 (orient:-) max_ev_support = 2 # spliced_intron 15346342-15346877 (orient:-) max_ev_support = 3 scaffold_14 - intron 15346342-15346877 asmbl_13711,asmbl_13715,asmbl_13716 scaffold_14 - retained_intron 15346342-15346877 asmbl_13713,asmbl_13714 // Retained and Spliced Intron # retained_intron 15345450-15346208 (orient:-) max_ev_support = 1 # spliced_intron 15345450-15346208 (orient:-) max_ev_support = 1 scaffold_14 - intron 15345450-15346208 asmbl_13715 scaffold_14 - retained_intron 15345450-15346208 asmbl_13714 // Retained and Spliced Intron # retained_intron 15345450-15346296 (orient:-) max_ev_support = 1 # spliced_intron 15345450-15346296 (orient:-) max_ev_support = 3 scaffold_14 - intron 15345450-15346296 asmbl_13711 scaffold_14 - retained_intron 15345450-15346296 asmbl_13714 // Retained and Spliced Intron # retained_intron 15345450-15346877 (orient:-) max_ev_support = 1 # spliced_intron 15345450-15346877 (orient:-) max_ev_support = 3 scaffold_14 - intron 15345450-15346877 asmbl_13712 scaffold_14 - retained_intron 15345450-15346877 asmbl_13714 // Retained and Spliced Intron # retained_intron 15347218-15347549 (orient:-) max_ev_support = 1 # spliced_intron 15347218-15347549 (orient:-) max_ev_support = 3 scaffold_14 - intron 15347218-15347549 asmbl_13711,asmbl_13712,asmbl_13714,asmbl_13715,asmbl_13716 scaffold_14 - retained_intron 15347218-15347549 asmbl_13717 // Retained and Spliced Intron # retained_intron 15453964-15454004 (orient:-) max_ev_support = 1 # spliced_intron 15453964-15454004 (orient:-) max_ev_support = 1 scaffold_14 - intron 15453964-15454004 asmbl_13727 scaffold_14 - retained_intron 15453964-15454004 asmbl_13726 // Retained and Spliced Intron # retained_intron 15693864-15693986 (orient:-) max_ev_support = 1 # spliced_intron 15693864-15693986 (orient:-) max_ev_support = 1 scaffold_14 - intron 15693864-15693986 asmbl_13740 scaffold_14 - retained_intron 15693864-15693986 asmbl_13739 // Retained and Spliced Intron # retained_intron 15753825-15753858 (orient:-) max_ev_support = 3 # spliced_intron 15753825-15753858 (orient:-) max_ev_support = 1 scaffold_14 - intron 15753825-15753858 asmbl_13748 scaffold_14 - retained_intron 15753825-15753858 asmbl_13747 // Retained and Spliced Intron # retained_intron 15831084-15831226 (orient:-) max_ev_support = 1 # spliced_intron 15831084-15831226 (orient:-) max_ev_support = 1 scaffold_14 - intron 15831084-15831226 asmbl_13757 scaffold_14 - retained_intron 15831084-15831226 asmbl_13755 // Retained and Spliced Intron # retained_intron 333-442 (orient:+) max_ev_support = 3 # spliced_intron 333-442 (orient:+) max_ev_support = 1 scaffold_1445 + intron 333-442 asmbl_13886 scaffold_1445 + retained_intron 333-442 asmbl_13885 // Retained and Spliced Intron # retained_intron 113-1567 (orient:+) max_ev_support = 9 # spliced_intron 113-1567 (orient:+) max_ev_support = 2 scaffold_149 + intron 113-1567 asmbl_13899 scaffold_149 + retained_intron 113-1567 asmbl_13898 // Retained and Spliced Intron # retained_intron 1774-1875 (orient:+) max_ev_support = 3 # spliced_intron 1774-1875 (orient:+) max_ev_support = 2 scaffold_149 + intron 1774-1875 asmbl_13900 scaffold_149 + retained_intron 1774-1875 asmbl_13898,asmbl_13899 // Retained and Spliced Intron # retained_intron 395669-395769 (orient:-) max_ev_support = 1 # spliced_intron 395669-395769 (orient:-) max_ev_support = 3 scaffold_15 - intron 395669-395769 asmbl_13919 scaffold_15 - retained_intron 395669-395769 asmbl_13920 // Retained and Spliced Intron # retained_intron 676925-677039 (orient:-) max_ev_support = 1 # spliced_intron 676925-677039 (orient:-) max_ev_support = 2 scaffold_15 - intron 676925-677039 asmbl_13938 scaffold_15 - retained_intron 676925-677039 asmbl_13939 // Retained and Spliced Intron # retained_intron 670210-670293 (orient:-) max_ev_support = 2 # spliced_intron 670210-670293 (orient:-) max_ev_support = 2 scaffold_15 - intron 670210-670293 asmbl_13941 scaffold_15 - retained_intron 670210-670293 asmbl_13940 // Retained and Spliced Intron # retained_intron 1500635-1500789 (orient:-) max_ev_support = 1 # spliced_intron 1500635-1500789 (orient:-) max_ev_support = 2 scaffold_15 - intron 1500635-1500789 asmbl_13952,asmbl_13954 scaffold_15 - retained_intron 1500635-1500789 asmbl_13955 // Retained and Spliced Intron # retained_intron 1500945-1501282 (orient:-) max_ev_support = 1 # spliced_intron 1500945-1501282 (orient:-) max_ev_support = 1 scaffold_15 - intron 1500945-1501282 asmbl_13954 scaffold_15 - retained_intron 1500945-1501282 asmbl_13955 // Retained and Spliced Intron # retained_intron 1501426-1501743 (orient:-) max_ev_support = 1 # spliced_intron 1501426-1501743 (orient:-) max_ev_support = 1 scaffold_15 - intron 1501426-1501743 asmbl_13954 scaffold_15 - retained_intron 1501426-1501743 asmbl_13955 // Retained and Spliced Intron # retained_intron 1504460-1504632 (orient:-) max_ev_support = 4 # spliced_intron 1504460-1504632 (orient:-) max_ev_support = 1 scaffold_15 - intron 1504460-1504632 asmbl_13959 scaffold_15 - retained_intron 1504460-1504632 asmbl_13956 // Retained and Spliced Intron # retained_intron 1504460-1504656 (orient:-) max_ev_support = 4 # spliced_intron 1504460-1504656 (orient:-) max_ev_support = 2 scaffold_15 - intron 1504460-1504656 asmbl_13957 scaffold_15 - retained_intron 1504460-1504656 asmbl_13956 // Retained and Spliced Intron # retained_intron 1504460-1505131 (orient:-) max_ev_support = 4 # spliced_intron 1504460-1505131 (orient:-) max_ev_support = 2 scaffold_15 - intron 1504460-1505131 asmbl_13958 scaffold_15 - retained_intron 1504460-1505131 asmbl_13956 // Retained and Spliced Intron # retained_intron 1797670-1797717 (orient:-) max_ev_support = 1 # spliced_intron 1797670-1797717 (orient:-) max_ev_support = 1 scaffold_15 - intron 1797670-1797717 asmbl_13974 scaffold_15 - retained_intron 1797670-1797717 asmbl_13975 // Retained and Spliced Intron # retained_intron 2434220-2434241 (orient:-) max_ev_support = 1 # spliced_intron 2434220-2434241 (orient:-) max_ev_support = 1 scaffold_15 - intron 2434220-2434241 asmbl_14002 scaffold_15 - retained_intron 2434220-2434241 asmbl_14003 // Retained and Spliced Intron # retained_intron 2467971-2467990 (orient:-) max_ev_support = 1 # spliced_intron 2467971-2467990 (orient:-) max_ev_support = 1 scaffold_15 - intron 2467971-2467990 asmbl_14011 scaffold_15 - retained_intron 2467971-2467990 asmbl_14012 // Retained and Spliced Intron # retained_intron 2557700-2557737 (orient:-) max_ev_support = 1 # spliced_intron 2557700-2557737 (orient:-) max_ev_support = 1 scaffold_15 - intron 2557700-2557737 asmbl_14019 scaffold_15 - retained_intron 2557700-2557737 asmbl_14018 // Exon Skipping and Retention # skipped_exon 2565681-2566519 (orient:-) max_ev_support = 2 # retained_exon 2566028-2566120 (orient:-) max_ev_support = 2 scaffold_15 - retained_exons 2566028-2566120 asmbl_14021,asmbl_14023,asmbl_14024,asmbl_14025 scaffold_15 - intron_skips_exon 2565681-2566519 asmbl_14022 // Exon Skipping and Retention # skipped_exon 2566797-2567481 (orient:-) max_ev_support = 1 # retained_exon 2567077-2567199 (orient:-) max_ev_support = 2 scaffold_15 - retained_exons 2567077-2567199 asmbl_14021,asmbl_14022,asmbl_14023 scaffold_15 - intron_skips_exon 2566797-2567481 asmbl_14024,asmbl_14025 // Retained and Spliced Intron # retained_intron 2565306-2565577 (orient:-) max_ev_support = 1 # spliced_intron 2565306-2565577 (orient:-) max_ev_support = 2 scaffold_15 - intron 2565306-2565577 asmbl_14021,asmbl_14022,asmbl_14024 scaffold_15 - retained_intron 2565306-2565577 asmbl_14023,asmbl_14025 // Retained and Spliced Intron # retained_intron 2718469-2718646 (orient:-) max_ev_support = 3 # spliced_intron 2718469-2718646 (orient:-) max_ev_support = 2 scaffold_15 - intron 2718469-2718646 asmbl_14035 scaffold_15 - retained_intron 2718469-2718646 asmbl_14034 // Retained and Spliced Intron # retained_intron 2730568-2730589 (orient:-) max_ev_support = 3 # spliced_intron 2730568-2730589 (orient:-) max_ev_support = 2 scaffold_15 - intron 2730568-2730589 asmbl_14038 scaffold_15 - retained_intron 2730568-2730589 asmbl_14037 // Retained and Spliced Intron # retained_intron 2822581-2822636 (orient:-) max_ev_support = 1 # spliced_intron 2822581-2822636 (orient:-) max_ev_support = 1 scaffold_15 - intron 2822581-2822636 asmbl_14053,asmbl_14054 scaffold_15 - retained_intron 2822581-2822636 asmbl_14052 // Retained and Spliced Intron # retained_intron 2823948-2824025 (orient:-) max_ev_support = 1 # spliced_intron 2823948-2824025 (orient:-) max_ev_support = 4 scaffold_15 - intron 2823948-2824025 asmbl_14052,asmbl_14053 scaffold_15 - retained_intron 2823948-2824025 asmbl_14054 // Retained and Spliced Intron # retained_intron 2894311-2894447 (orient:-) max_ev_support = 2 # spliced_intron 2894311-2894447 (orient:-) max_ev_support = 1 scaffold_15 - intron 2894311-2894447 asmbl_14063 scaffold_15 - retained_intron 2894311-2894447 asmbl_14062 // Exon Skipping and Retention # skipped_exon 2990161-2990835 (orient:-) max_ev_support = 2 # retained_exon 2990689-2990754 (orient:-) max_ev_support = 2 scaffold_15 - retained_exons 2990689-2990754 asmbl_14068 scaffold_15 - intron_skips_exon 2990161-2990835 asmbl_14069 // Retained and Spliced Intron # retained_intron 2990755-2990835 (orient:-) max_ev_support = 2 # spliced_intron 2990755-2990835 (orient:-) max_ev_support = 2 scaffold_15 - intron 2990755-2990835 asmbl_14068 scaffold_15 - retained_intron 2990755-2990835 asmbl_14070 // Retained and Spliced Intron # retained_intron 3363315-3363443 (orient:-) max_ev_support = 3 # spliced_intron 3363315-3363443 (orient:-) max_ev_support = 2 scaffold_15 - intron 3363315-3363443 asmbl_14089 scaffold_15 - retained_intron 3363315-3363443 asmbl_14088 // Exon Skipping and Retention # skipped_exon 3368374-3368889 (orient:-) max_ev_support = 1 # retained_exon 3368556-3368688 (orient:-) max_ev_support = 1 scaffold_15 - retained_exons 3368556-3368688 asmbl_14093 scaffold_15 - intron_skips_exon 3368374-3368889 asmbl_14092 // Exon Skipping and Retention # skipped_exon 3713137-3713705 (orient:-) max_ev_support = 1 # retained_exon 3713334-3713461 (orient:-) max_ev_support = 2 scaffold_15 - retained_exons 3713334-3713461 asmbl_14116 scaffold_15 - intron_skips_exon 3713137-3713705 asmbl_14117 // Retained and Spliced Intron # retained_intron 4117365-4117553 (orient:-) max_ev_support = 3 # spliced_intron 4117365-4117553 (orient:-) max_ev_support = 2 scaffold_15 - intron 4117365-4117553 asmbl_14123,asmbl_14124,asmbl_14127 scaffold_15 - retained_intron 4117365-4117553 asmbl_14122 // Retained and Spliced Intron # retained_intron 4117643-4117724 (orient:-) max_ev_support = 2 # spliced_intron 4117643-4117724 (orient:-) max_ev_support = 1 scaffold_15 - intron 4117643-4117724 asmbl_14127 scaffold_15 - retained_intron 4117643-4117724 asmbl_14122,asmbl_14124 // Retained and Spliced Intron # retained_intron 4117643-4117871 (orient:-) max_ev_support = 2 # spliced_intron 4117643-4117871 (orient:-) max_ev_support = 2 scaffold_15 - intron 4117643-4117871 asmbl_14123 scaffold_15 - retained_intron 4117643-4117871 asmbl_14122,asmbl_14124 // Exon Skipping and Retention # skipped_exon 4133120-4133882 (orient:-) max_ev_support = 1 # retained_exon 4133428-4133547 (orient:-) max_ev_support = 2 scaffold_15 - retained_exons 4133428-4133547 asmbl_14128 scaffold_15 - intron_skips_exon 4133120-4133882 asmbl_14130 // Retained and Spliced Intron # retained_intron 4469772-4470220 (orient:-) max_ev_support = 2 # spliced_intron 4469772-4470220 (orient:-) max_ev_support = 3 scaffold_15 - intron 4469772-4470220 asmbl_14144 scaffold_15 - retained_intron 4469772-4470220 asmbl_14145 // Exon Skipping and Retention # skipped_exon 4757848-4758609 (orient:-) max_ev_support = 1 # retained_exon 4758014-4758185 (orient:-) max_ev_support = 2 scaffold_15 - retained_exons 4758014-4758185 asmbl_14154 scaffold_15 - intron_skips_exon 4757848-4758609 asmbl_14155 // Retained and Spliced Intron # retained_intron 4815601-4815751 (orient:-) max_ev_support = 1 # spliced_intron 4815601-4815751 (orient:-) max_ev_support = 2 scaffold_15 - intron 4815601-4815751 asmbl_14163,asmbl_14164,asmbl_14166 scaffold_15 - retained_intron 4815601-4815751 asmbl_14165 // Retained and Spliced Intron # retained_intron 4817650-4817737 (orient:-) max_ev_support = 1 # spliced_intron 4817650-4817737 (orient:-) max_ev_support = 2 scaffold_15 - intron 4817650-4817737 asmbl_14163 scaffold_15 - retained_intron 4817650-4817737 asmbl_14166 // Retained and Spliced Intron # retained_intron 4983626-4984030 (orient:-) max_ev_support = 1 # spliced_intron 4983626-4984030 (orient:-) max_ev_support = 1 scaffold_15 - intron 4983626-4984030 asmbl_14183 scaffold_15 - retained_intron 4983626-4984030 asmbl_14181,asmbl_14184,asmbl_14185 // Exon Skipping and Retention # skipped_exon 4982605-4984030 (orient:-) max_ev_support = 2 # retained_exon 4983131-4983625 (orient:-) max_ev_support = 1 scaffold_15 - retained_exons 4983131-4983625 asmbl_14183 scaffold_15 - intron_skips_exon 4982605-4984030 asmbl_14179,asmbl_14182 // Exon Skipping and Retention # skipped_exon 5355541-5357686 (orient:-) max_ev_support = 1 # retained_exon 5356434-5356448 (orient:-) max_ev_support = 1 scaffold_15 - retained_exons 5356434-5356448 asmbl_14203 scaffold_15 - intron_skips_exon 5355541-5357686 asmbl_14202 // Retained and Spliced Intron # retained_intron 5453657-5453810 (orient:-) max_ev_support = 2 # spliced_intron 5453657-5453810 (orient:-) max_ev_support = 2 scaffold_15 - intron 5453657-5453810 asmbl_14208,asmbl_14209,asmbl_14213 scaffold_15 - retained_intron 5453657-5453810 asmbl_14210,asmbl_14214 // Retained and Spliced Intron # retained_intron 5453993-5454323 (orient:-) max_ev_support = 2 # spliced_intron 5453993-5454323 (orient:-) max_ev_support = 2 scaffold_15 - intron 5453993-5454323 asmbl_14208,asmbl_14209,asmbl_14213 scaffold_15 - retained_intron 5453993-5454323 asmbl_14210,asmbl_14214 // Retained and Spliced Intron # retained_intron 5454516-5454744 (orient:-) max_ev_support = 2 # spliced_intron 5454516-5454744 (orient:-) max_ev_support = 2 scaffold_15 - intron 5454516-5454744 asmbl_14208,asmbl_14209,asmbl_14213,asmbl_14214 scaffold_15 - retained_intron 5454516-5454744 asmbl_14210 // Retained and Spliced Intron # retained_intron 5454907-5455211 (orient:-) max_ev_support = 2 # spliced_intron 5454907-5455211 (orient:-) max_ev_support = 2 scaffold_15 - intron 5454907-5455211 asmbl_14208,asmbl_14209,asmbl_14213,asmbl_14214 scaffold_15 - retained_intron 5454907-5455211 asmbl_14210 // Retained and Spliced Intron # retained_intron 5738488-5739051 (orient:-) max_ev_support = 1 # spliced_intron 5738488-5739051 (orient:-) max_ev_support = 1 scaffold_15 - intron 5738488-5739051 asmbl_14231 scaffold_15 - retained_intron 5738488-5739051 asmbl_14230,asmbl_14232,asmbl_14233,asmbl_14234 // Exon Skipping and Retention # skipped_exon 5741750-5743112 (orient:-) max_ev_support = 1 # retained_exon 5742772-5742851 (orient:-) max_ev_support = 1 scaffold_15 - retained_exons 5742772-5742851 asmbl_14230,asmbl_14231,asmbl_14232 scaffold_15 - intron_skips_exon 5741750-5743112 asmbl_14233 // Exon Skipping and Retention # skipped_exon 5742852-5745664 (orient:-) max_ev_support = 1 # retained_exon 5743113-5743192 (orient:-) max_ev_support = 1 scaffold_15 - retained_exons 5743113-5743192 asmbl_14232,asmbl_14233 scaffold_15 - intron_skips_exon 5742852-5745664 asmbl_14230,asmbl_14231 // Retained and Spliced Intron # retained_intron 6080096-6080203 (orient:-) max_ev_support = 1 # spliced_intron 6080096-6080203 (orient:-) max_ev_support = 2 scaffold_15 - intron 6080096-6080203 asmbl_14239 scaffold_15 - retained_intron 6080096-6080203 asmbl_14241 // Retained and Spliced Intron # retained_intron 6080293-6080419 (orient:-) max_ev_support = 1 # spliced_intron 6080293-6080419 (orient:-) max_ev_support = 2 scaffold_15 - intron 6080293-6080419 asmbl_14239 scaffold_15 - retained_intron 6080293-6080419 asmbl_14241 // Retained and Spliced Intron # retained_intron 6104285-6104570 (orient:-) max_ev_support = 2 # spliced_intron 6104285-6104570 (orient:-) max_ev_support = 3 scaffold_15 - intron 6104285-6104570 asmbl_14243 scaffold_15 - retained_intron 6104285-6104570 asmbl_14246 // Retained and Spliced Intron # retained_intron 6780650-6780734 (orient:-) max_ev_support = 1 # spliced_intron 6780650-6780734 (orient:-) max_ev_support = 2 scaffold_15 - intron 6780650-6780734 asmbl_14251 scaffold_15 - retained_intron 6780650-6780734 asmbl_14252 // Retained and Spliced Intron # retained_intron 6793556-6793655 (orient:-) max_ev_support = 2 # spliced_intron 6793556-6793655 (orient:-) max_ev_support = 2 scaffold_15 - intron 6793556-6793655 asmbl_14258 scaffold_15 - retained_intron 6793556-6793655 asmbl_14257 // Exon Skipping and Retention # skipped_exon 6882902-6884459 (orient:-) max_ev_support = 2 # retained_exon 6883099-6883630 (orient:-) max_ev_support = 3 scaffold_15 - retained_exons 6883099-6883182,6883556-6883630 asmbl_14260 scaffold_15 - intron_skips_exon 6882902-6884459 asmbl_14263,asmbl_14264,asmbl_14267,asmbl_14268,asmbl_14269 // Exon Skipping and Retention # skipped_exon 6888065-6888716 (orient:-) max_ev_support = 1 # retained_exon 6888189-6888245 (orient:-) max_ev_support = 2 scaffold_15 - retained_exons 6888189-6888245 asmbl_14260,asmbl_14263,asmbl_14264,asmbl_14265,asmbl_14268,asmbl_14269,asmbl_14270 scaffold_15 - intron_skips_exon 6888065-6888716 asmbl_14267 // Retained and Spliced Intron # retained_intron 6882636-6882713 (orient:-) max_ev_support = 2 # spliced_intron 6882636-6882713 (orient:-) max_ev_support = 3 scaffold_15 - intron 6882636-6882713 asmbl_14259,asmbl_14260,asmbl_14262,asmbl_14263,asmbl_14264,asmbl_14265,asmbl_14267,asmbl_14268,asmbl_14269,asmbl_14270 scaffold_15 - retained_intron 6882636-6882713 asmbl_14261 // Exon Skipping and Retention # skipped_exon 6884687-6887444 (orient:-) max_ev_support = 2 # retained_exon 6886779-6886835 (orient:-) max_ev_support = 2 scaffold_15 - retained_exons 6886779-6886835 asmbl_14264,asmbl_14267,asmbl_14268,asmbl_14270 scaffold_15 - intron_skips_exon 6884687-6887444 asmbl_14260,asmbl_14263,asmbl_14265,asmbl_14269 // Exon Skipping and Retention # skipped_exon 6883631-6884459 (orient:-) max_ev_support = 3 # retained_exon 6884075-6884143 (orient:-) max_ev_support = 2 scaffold_15 - retained_exons 6884075-6884143 asmbl_14265,asmbl_14270 scaffold_15 - intron_skips_exon 6883631-6884459 asmbl_14260 // Exon Skipping and Retention # skipped_exon 6957099-6957426 (orient:-) max_ev_support = 2 # retained_exon 6957134-6957218 (orient:-) max_ev_support = 2 scaffold_15 - retained_exons 6957134-6957218 asmbl_14271,asmbl_14273 scaffold_15 - intron_skips_exon 6957099-6957426 asmbl_14272 // Exon Skipping and Retention # skipped_exon 6956898-6957133 (orient:-) max_ev_support = 2 # retained_exon 6957077-6957098 (orient:-) max_ev_support = 2 scaffold_15 - retained_exons 6957077-6957098 asmbl_14272 scaffold_15 - intron_skips_exon 6956898-6957133 asmbl_14271,asmbl_14273 // Exon Skipping and Retention # skipped_exon 7181904-7183428 (orient:-) max_ev_support = 2 # retained_exon 7182916-7182948 (orient:-) max_ev_support = 2 scaffold_15 - retained_exons 7182916-7182948 asmbl_14275 scaffold_15 - intron_skips_exon 7181904-7183428 asmbl_14277,asmbl_14278 // Exon Skipping and Retention # skipped_exon 7181904-7184176 (orient:-) max_ev_support = 2 # retained_exon 7183429-7183551 (orient:-) max_ev_support = 2 scaffold_15 - retained_exons 7183429-7183551 asmbl_14277 scaffold_15 - intron_skips_exon 7181904-7184176 asmbl_14276 // Retained and Spliced Intron # retained_intron 7254010-7254095 (orient:-) max_ev_support = 1 # spliced_intron 7254010-7254095 (orient:-) max_ev_support = 2 scaffold_15 - intron 7254010-7254095 asmbl_14287 scaffold_15 - retained_intron 7254010-7254095 asmbl_14288 // Retained and Spliced Intron # retained_intron 7437135-7437261 (orient:-) max_ev_support = 3 # spliced_intron 7437135-7437261 (orient:-) max_ev_support = 2 scaffold_15 - intron 7437135-7437261 asmbl_14298 scaffold_15 - retained_intron 7437135-7437261 asmbl_14297 // Retained and Spliced Intron # retained_intron 8039747-8039835 (orient:-) max_ev_support = 3 # spliced_intron 8039747-8039835 (orient:-) max_ev_support = 1 scaffold_15 - intron 8039747-8039835 asmbl_14328 scaffold_15 - retained_intron 8039747-8039835 asmbl_14326 // Retained and Spliced Intron # retained_intron 8039747-8042221 (orient:-) max_ev_support = 3 # spliced_intron 8039747-8042221 (orient:-) max_ev_support = 2 scaffold_15 - intron 8039747-8042221 asmbl_14327 scaffold_15 - retained_intron 8039747-8042221 asmbl_14326 // Exon Skipping and Retention # skipped_exon 8073277-8075917 (orient:-) max_ev_support = 2 # retained_exon 8074969-8075043 (orient:-) max_ev_support = 2 scaffold_15 - retained_exons 8074969-8075043 asmbl_14331 scaffold_15 - intron_skips_exon 8073277-8075917 asmbl_14332 // Retained and Spliced Intron # retained_intron 8628465-8629828 (orient:-) max_ev_support = 4 # spliced_intron 8628465-8629828 (orient:-) max_ev_support = 3 scaffold_15 - intron 8628465-8629828 asmbl_14345 scaffold_15 - retained_intron 8628465-8629828 asmbl_14344 // Exon Skipping and Retention # skipped_exon 8796077-8796511 (orient:-) max_ev_support = 1 # retained_exon 8796207-8796344 (orient:-) max_ev_support = 2 scaffold_15 - retained_exons 8796207-8796344 asmbl_14352,asmbl_14353 scaffold_15 - intron_skips_exon 8796077-8796511 asmbl_14354,asmbl_14355 // Retained and Spliced Intron # retained_intron 9004560-9004735 (orient:-) max_ev_support = 2 # spliced_intron 9004560-9004735 (orient:-) max_ev_support = 2 scaffold_15 - intron 9004560-9004735 asmbl_14363 scaffold_15 - retained_intron 9004560-9004735 asmbl_14364 // Retained and Spliced Intron # retained_intron 9573070-9573444 (orient:-) max_ev_support = 2 # spliced_intron 9573070-9573444 (orient:-) max_ev_support = 2 scaffold_15 - intron 9573070-9573444 asmbl_14382,asmbl_14383 scaffold_15 - retained_intron 9573070-9573444 asmbl_14384 // Retained and Spliced Intron # retained_intron 9638324-9639423 (orient:-) max_ev_support = 2 # spliced_intron 9638324-9639423 (orient:-) max_ev_support = 1 scaffold_15 - intron 9638324-9639423 asmbl_14390 scaffold_15 - retained_intron 9638324-9639423 asmbl_14389 // Exon Skipping and Retention # skipped_exon 9666417-9668414 (orient:-) max_ev_support = 2 # retained_exon 9667385-9667844 (orient:-) max_ev_support = 1 scaffold_15 - retained_exons 9667385-9667399,9667812-9667844 asmbl_14395 scaffold_15 - intron_skips_exon 9666417-9668414 asmbl_14393,asmbl_14394 // Retained and Spliced Intron # retained_intron 9732951-9733059 (orient:-) max_ev_support = 3 # spliced_intron 9732951-9733059 (orient:-) max_ev_support = 2 scaffold_15 - intron 9732951-9733059 asmbl_14405,asmbl_14408,asmbl_14409 scaffold_15 - retained_intron 9732951-9733059 asmbl_14404 // Retained and Spliced Intron # retained_intron 9730272-9730382 (orient:-) max_ev_support = 1 # spliced_intron 9730272-9730382 (orient:-) max_ev_support = 3 scaffold_15 - intron 9730272-9730382 asmbl_14404,asmbl_14405,asmbl_14408,asmbl_14409 scaffold_15 - retained_intron 9730272-9730382 asmbl_14407 // Retained and Spliced Intron # retained_intron 9730449-9730698 (orient:-) max_ev_support = 1 # spliced_intron 9730449-9730698 (orient:-) max_ev_support = 3 scaffold_15 - intron 9730449-9730698 asmbl_14404,asmbl_14405,asmbl_14408,asmbl_14409 scaffold_15 - retained_intron 9730449-9730698 asmbl_14407 // Retained and Spliced Intron # retained_intron 9854011-9854120 (orient:-) max_ev_support = 3 # spliced_intron 9854011-9854120 (orient:-) max_ev_support = 1 scaffold_15 - intron 9854011-9854120 asmbl_14417 scaffold_15 - retained_intron 9854011-9854120 asmbl_14414,asmbl_14415,asmbl_14416 // Exon Skipping and Retention # skipped_exon 10878095-10880861 (orient:-) max_ev_support = 1 # retained_exon 10880031-10880144 (orient:-) max_ev_support = 2 scaffold_15 - retained_exons 10880031-10880144 asmbl_14460 scaffold_15 - intron_skips_exon 10878095-10880861 asmbl_14462 // Exon Skipping and Retention # skipped_exon 11141169-11142116 (orient:-) max_ev_support = 1 # retained_exon 11141906-11141941 (orient:-) max_ev_support = 1 scaffold_15 - retained_exons 11141906-11141941 asmbl_14482,asmbl_14484,asmbl_14486 scaffold_15 - intron_skips_exon 11141169-11142116 asmbl_14485,asmbl_14488,asmbl_14487 // Exon Skipping and Retention # skipped_exon 11142283-11144388 (orient:-) max_ev_support = 1 # retained_exon 11143710-11143790 (orient:-) max_ev_support = 1 scaffold_15 - retained_exons 11143710-11143790 asmbl_14484,asmbl_14488 scaffold_15 - intron_skips_exon 11142283-11144388 asmbl_14485,asmbl_14486 // Retained and Spliced Intron # retained_intron 11402043-11402524 (orient:-) max_ev_support = 1 # spliced_intron 11402043-11402524 (orient:-) max_ev_support = 2 scaffold_15 - intron 11402043-11402524 asmbl_14495 scaffold_15 - retained_intron 11402043-11402524 asmbl_14494,asmbl_14496 // Retained and Spliced Intron # retained_intron 11402046-11402524 (orient:-) max_ev_support = 1 # spliced_intron 11402046-11402524 (orient:-) max_ev_support = 2 scaffold_15 - intron 11402046-11402524 asmbl_14493 scaffold_15 - retained_intron 11402046-11402524 asmbl_14494,asmbl_14496 // Retained and Spliced Intron # retained_intron 11562810-11563294 (orient:-) max_ev_support = 1 # spliced_intron 11562810-11563294 (orient:-) max_ev_support = 2 scaffold_15 - intron 11562810-11563294 asmbl_14522 scaffold_15 - retained_intron 11562810-11563294 asmbl_14523 // Retained and Spliced Intron # retained_intron 11728507-11728700 (orient:-) max_ev_support = 1 # spliced_intron 11728507-11728700 (orient:-) max_ev_support = 1 scaffold_15 - intron 11728507-11728700 asmbl_14529 scaffold_15 - retained_intron 11728507-11728700 asmbl_14530 // Retained and Spliced Intron # retained_intron 11940228-11941598 (orient:-) max_ev_support = 1 # spliced_intron 11940228-11941598 (orient:-) max_ev_support = 2 scaffold_15 - intron 11940228-11941598 asmbl_14538 scaffold_15 - retained_intron 11940228-11941598 asmbl_14541 // Retained and Spliced Intron # retained_intron 11941297-11941598 (orient:-) max_ev_support = 1 # spliced_intron 11941297-11941598 (orient:-) max_ev_support = 2 scaffold_15 - intron 11941297-11941598 asmbl_14539 scaffold_15 - retained_intron 11941297-11941598 asmbl_14541 // Retained and Spliced Intron # retained_intron 12000429-12000658 (orient:-) max_ev_support = 2 # spliced_intron 12000429-12000658 (orient:-) max_ev_support = 3 scaffold_15 - intron 12000429-12000658 asmbl_14546,asmbl_14547,asmbl_14552 scaffold_15 - retained_intron 12000429-12000658 asmbl_14549,asmbl_14550 // Retained and Spliced Intron # retained_intron 12000469-12000658 (orient:-) max_ev_support = 2 # spliced_intron 12000469-12000658 (orient:-) max_ev_support = 3 scaffold_15 - intron 12000469-12000658 asmbl_14548,asmbl_14551 scaffold_15 - retained_intron 12000469-12000658 asmbl_14549,asmbl_14550 // Retained and Spliced Intron # retained_intron 12000050-12000366 (orient:-) max_ev_support = 1 # spliced_intron 12000050-12000366 (orient:-) max_ev_support = 3 scaffold_15 - intron 12000050-12000366 asmbl_14546 scaffold_15 - retained_intron 12000050-12000366 asmbl_14550,asmbl_14551,asmbl_14552 // Retained and Spliced Intron # retained_intron 12000050-12000403 (orient:-) max_ev_support = 1 # spliced_intron 12000050-12000403 (orient:-) max_ev_support = 3 scaffold_15 - intron 12000050-12000403 asmbl_14547,asmbl_14548,asmbl_14549 scaffold_15 - retained_intron 12000050-12000403 asmbl_14550,asmbl_14551,asmbl_14552 // Retained and Spliced Intron # retained_intron 12003651-12003789 (orient:-) max_ev_support = 2 # spliced_intron 12003651-12003789 (orient:-) max_ev_support = 2 scaffold_15 - intron 12003651-12003789 asmbl_14553,asmbl_14555,asmbl_14556 scaffold_15 - retained_intron 12003651-12003789 asmbl_14554 // Retained and Spliced Intron # retained_intron 12008633-12009314 (orient:-) max_ev_support = 3 # spliced_intron 12008633-12009314 (orient:-) max_ev_support = 3 scaffold_15 - intron 12008633-12009314 asmbl_14555 scaffold_15 - retained_intron 12008633-12009314 asmbl_14554,asmbl_14556 // Exon Skipping and Retention # skipped_exon 12008633-12009572 (orient:-) max_ev_support = 3 # retained_exon 12009315-12009379 (orient:-) max_ev_support = 3 scaffold_15 - retained_exons 12009315-12009379 asmbl_14555 scaffold_15 - intron_skips_exon 12008633-12009572 asmbl_14553 // Retained and Spliced Intron # retained_intron 12026739-12026841 (orient:-) max_ev_support = 2 # spliced_intron 12026739-12026841 (orient:-) max_ev_support = 1 scaffold_15 - intron 12026739-12026841 asmbl_14558 scaffold_15 - retained_intron 12026739-12026841 asmbl_14557 // Retained and Spliced Intron # retained_intron 12133093-12133392 (orient:-) max_ev_support = 1 # spliced_intron 12133093-12133392 (orient:-) max_ev_support = 3 scaffold_15 - intron 12133093-12133392 asmbl_14564 scaffold_15 - retained_intron 12133093-12133392 asmbl_14565 // Retained and Spliced Intron # retained_intron 12390490-12391005 (orient:-) max_ev_support = 2 # spliced_intron 12390490-12391005 (orient:-) max_ev_support = 2 scaffold_15 - intron 12390490-12391005 asmbl_14571,asmbl_14572 scaffold_15 - retained_intron 12390490-12391005 asmbl_14570 // Exon Skipping and Retention # skipped_exon 12390490-12391553 (orient:-) max_ev_support = 1 # retained_exon 12391006-12391047 (orient:-) max_ev_support = 1 scaffold_15 - retained_exons 12391006-12391047 asmbl_14572 scaffold_15 - intron_skips_exon 12390490-12391553 asmbl_14575 // Retained and Spliced Intron # retained_intron 12537084-12537192 (orient:-) max_ev_support = 1 # spliced_intron 12537084-12537192 (orient:-) max_ev_support = 2 scaffold_15 - intron 12537084-12537192 asmbl_14581 scaffold_15 - retained_intron 12537084-12537192 asmbl_14582 // Retained and Spliced Intron # retained_intron 12597437-12597600 (orient:-) max_ev_support = 2 # spliced_intron 12597437-12597600 (orient:-) max_ev_support = 2 scaffold_15 - intron 12597437-12597600 asmbl_14586,asmbl_14589,asmbl_14591 scaffold_15 - retained_intron 12597437-12597600 asmbl_14587,asmbl_14590 // Exon Skipping and Retention # skipped_exon 13558874-13561252 (orient:-) max_ev_support = 2 # retained_exon 13560493-13560666 (orient:-) max_ev_support = 1 scaffold_15 - retained_exons 13560493-13560666 asmbl_14642 scaffold_15 - intron_skips_exon 13558874-13561252 asmbl_14640,asmbl_14641 // Retained and Spliced Intron # retained_intron 13706834-13706990 (orient:-) max_ev_support = 5 # spliced_intron 13706834-13706990 (orient:-) max_ev_support = 1 scaffold_15 - intron 13706834-13706990 asmbl_14657 scaffold_15 - retained_intron 13706834-13706990 asmbl_14656 // Retained and Spliced Intron # retained_intron 13759939-13760410 (orient:-) max_ev_support = 3 # spliced_intron 13759939-13760410 (orient:-) max_ev_support = 2 scaffold_15 - intron 13759939-13760410 asmbl_14664 scaffold_15 - retained_intron 13759939-13760410 asmbl_14662 // Retained and Spliced Intron # retained_intron 13760201-13760410 (orient:-) max_ev_support = 3 # spliced_intron 13760201-13760410 (orient:-) max_ev_support = 2 scaffold_15 - intron 13760201-13760410 asmbl_14663,asmbl_14665 scaffold_15 - retained_intron 13760201-13760410 asmbl_14662 // Exon Skipping and Retention # skipped_exon 13812383-13814430 (orient:-) max_ev_support = 5 # retained_exon 13813532-13813573 (orient:-) max_ev_support = 1 scaffold_15 - retained_exons 13813532-13813573 asmbl_14674 scaffold_15 - intron_skips_exon 13812383-13814430 asmbl_14673 // Exon Skipping and Retention # skipped_exon 13834390-13836975 (orient:-) max_ev_support = 3 # retained_exon 13835383-13835403 (orient:-) max_ev_support = 3 scaffold_15 - retained_exons 13835383-13835403 asmbl_14678 scaffold_15 - intron_skips_exon 13834390-13836975 asmbl_14677 // Retained and Spliced Intron # retained_intron 13944525-13944639 (orient:-) max_ev_support = 1 # spliced_intron 13944525-13944639 (orient:-) max_ev_support = 1 scaffold_15 - intron 13944525-13944639 asmbl_14682,asmbl_14685 scaffold_15 - retained_intron 13944525-13944639 asmbl_14683,asmbl_14684 // Retained and Spliced Intron # retained_intron 14322902-14323125 (orient:-) max_ev_support = 2 # spliced_intron 14322902-14323125 (orient:-) max_ev_support = 2 scaffold_15 - intron 14322902-14323125 asmbl_14718,asmbl_14719 scaffold_15 - retained_intron 14322902-14323125 asmbl_14711,asmbl_14712 // Retained and Spliced Intron # retained_intron 14324311-14324883 (orient:-) max_ev_support = 2 # spliced_intron 14324311-14324883 (orient:-) max_ev_support = 2 scaffold_15 - intron 14324311-14324883 asmbl_14719 scaffold_15 - retained_intron 14324311-14324883 asmbl_14711,asmbl_14712,asmbl_14718 // Retained and Spliced Intron # retained_intron 14323219-14323986 (orient:-) max_ev_support = 2 # spliced_intron 14323219-14323986 (orient:-) max_ev_support = 2 scaffold_15 - intron 14323219-14323986 asmbl_14711 scaffold_15 - retained_intron 14323219-14323986 asmbl_14712,asmbl_14718 // Retained and Spliced Intron # retained_intron 14323219-14324235 (orient:-) max_ev_support = 2 # spliced_intron 14323219-14324235 (orient:-) max_ev_support = 2 scaffold_15 - intron 14323219-14324235 asmbl_14719 scaffold_15 - retained_intron 14323219-14324235 asmbl_14712,asmbl_14718 // Exon Skipping and Retention # skipped_exon 14633432-14633944 (orient:-) max_ev_support = 2 # retained_exon 14633628-14633734 (orient:-) max_ev_support = 2 scaffold_15 - retained_exons 14633628-14633734 asmbl_14732 scaffold_15 - intron_skips_exon 14633432-14633944 asmbl_14733 // Exon Skipping and Retention # skipped_exon 14633432-14634502 (orient:-) max_ev_support = 2 # retained_exon 14633628-14634042 (orient:-) max_ev_support = 2 scaffold_15 - retained_exons 14633628-14633734,14633892-14634042 asmbl_14732 scaffold_15 - intron_skips_exon 14633432-14634502 asmbl_14734 // Exon Skipping and Retention # skipped_exon 14633432-14634492 (orient:-) max_ev_support = 1 # retained_exon 14633628-14634042 (orient:-) max_ev_support = 2 scaffold_15 - retained_exons 14633628-14633734,14633892-14634042 asmbl_14732 scaffold_15 - intron_skips_exon 14633432-14634492 asmbl_14736 // Retained and Spliced Intron # retained_intron 15416433-15416546 (orient:-) max_ev_support = 1 # spliced_intron 15416433-15416546 (orient:-) max_ev_support = 1 scaffold_15 - intron 15416433-15416546 asmbl_14776 scaffold_15 - retained_intron 15416433-15416546 asmbl_14777,asmbl_14778 // Retained and Spliced Intron # retained_intron 15416820-15416897 (orient:-) max_ev_support = 1 # spliced_intron 15416820-15416897 (orient:-) max_ev_support = 1 scaffold_15 - intron 15416820-15416897 asmbl_14776,asmbl_14778 scaffold_15 - retained_intron 15416820-15416897 asmbl_14777 // Retained and Spliced Intron # retained_intron 15434376-15435496 (orient:-) max_ev_support = 5 # spliced_intron 15434376-15435496 (orient:-) max_ev_support = 1 scaffold_15 - intron 15434376-15435496 asmbl_14785 scaffold_15 - retained_intron 15434376-15435496 asmbl_14782,asmbl_14783 // Retained and Spliced Intron # retained_intron 15434376-15435512 (orient:-) max_ev_support = 5 # spliced_intron 15434376-15435512 (orient:-) max_ev_support = 2 scaffold_15 - intron 15434376-15435512 asmbl_14784,asmbl_14786 scaffold_15 - retained_intron 15434376-15435512 asmbl_14782,asmbl_14783 // Retained and Spliced Intron # retained_intron 15435691-15435799 (orient:-) max_ev_support = 3 # spliced_intron 15435691-15435799 (orient:-) max_ev_support = 1 scaffold_15 - intron 15435691-15435799 asmbl_14783 scaffold_15 - retained_intron 15435691-15435799 asmbl_14782,asmbl_14784,asmbl_14785,asmbl_14786,asmbl_14787,asmbl_14788 // Retained and Spliced Intron # retained_intron 15523267-15523823 (orient:-) max_ev_support = 3 # spliced_intron 15523267-15523823 (orient:-) max_ev_support = 2 scaffold_15 - intron 15523267-15523823 asmbl_14792 scaffold_15 - retained_intron 15523267-15523823 asmbl_14791 // Retained and Spliced Intron # retained_intron 15906139-15906230 (orient:-) max_ev_support = 2 # spliced_intron 15906139-15906230 (orient:-) max_ev_support = 2 scaffold_15 - intron 15906139-15906230 asmbl_14807,asmbl_14809,asmbl_14810,asmbl_14811,asmbl_14812,asmbl_14813,asmbl_14814 scaffold_15 - retained_intron 15906139-15906230 asmbl_14808 // Retained and Spliced Intron # retained_intron 15906877-15906998 (orient:-) max_ev_support = 1 # spliced_intron 15906877-15906998 (orient:-) max_ev_support = 1 scaffold_15 - intron 15906877-15906998 asmbl_14813 scaffold_15 - retained_intron 15906877-15906998 asmbl_14809,asmbl_14812,asmbl_14814 // Retained and Spliced Intron # retained_intron 15907550-15907932 (orient:-) max_ev_support = 1 # spliced_intron 15907550-15907932 (orient:-) max_ev_support = 2 scaffold_15 - intron 15907550-15907932 asmbl_14807,asmbl_14809,asmbl_14812,asmbl_14813 scaffold_15 - retained_intron 15907550-15907932 asmbl_14810,asmbl_14811,asmbl_14814 // Retained and Spliced Intron # retained_intron 15908373-15908721 (orient:-) max_ev_support = 1 # spliced_intron 15908373-15908721 (orient:-) max_ev_support = 2 scaffold_15 - intron 15908373-15908721 asmbl_14807,asmbl_14809,asmbl_14811,asmbl_14812,asmbl_14813,asmbl_14814 scaffold_15 - retained_intron 15908373-15908721 asmbl_14810 // Retained and Spliced Intron # retained_intron 15906565-15906850 (orient:-) max_ev_support = 1 # spliced_intron 15906565-15906850 (orient:-) max_ev_support = 1 scaffold_15 - intron 15906565-15906850 asmbl_14809,asmbl_14813 scaffold_15 - retained_intron 15906565-15906850 asmbl_14812,asmbl_14814 // Retained and Spliced Intron # retained_intron 15906565-15906998 (orient:-) max_ev_support = 1 # spliced_intron 15906565-15906998 (orient:-) max_ev_support = 2 scaffold_15 - intron 15906565-15906998 asmbl_14807,asmbl_14810,asmbl_14811 scaffold_15 - retained_intron 15906565-15906998 asmbl_14812,asmbl_14814 // Exon Skipping and Retention # skipped_exon 15906565-15906998 (orient:-) max_ev_support = 2 # retained_exon 15906851-15906876 (orient:-) max_ev_support = 1 scaffold_15 - retained_exons 15906851-15906876 asmbl_14813 scaffold_15 - intron_skips_exon 15906565-15906998 asmbl_14807,asmbl_14810,asmbl_14811 // Retained and Spliced Intron # retained_intron 16266207-16266369 (orient:-) max_ev_support = 2 # spliced_intron 16266207-16266369 (orient:-) max_ev_support = 2 scaffold_15 - intron 16266207-16266369 asmbl_14823 scaffold_15 - retained_intron 16266207-16266369 asmbl_14822 // Retained and Spliced Intron # retained_intron 16366344-16366420 (orient:-) max_ev_support = 3 # spliced_intron 16366344-16366420 (orient:-) max_ev_support = 3 scaffold_15 - intron 16366344-16366420 asmbl_14832 scaffold_15 - retained_intron 16366344-16366420 asmbl_14833 // Retained and Spliced Intron # retained_intron 181512-182202 (orient:+) max_ev_support = 3 # spliced_intron 181512-182202 (orient:+) max_ev_support = 1 scaffold_15 + intron 181512-182202 asmbl_14952 scaffold_15 + retained_intron 181512-182202 asmbl_14951 // Exon Skipping and Retention # skipped_exon 345797-347489 (orient:+) max_ev_support = 1 # retained_exon 346455-346550 (orient:+) max_ev_support = 2 scaffold_15 + retained_exons 346455-346550 asmbl_14959 scaffold_15 + intron_skips_exon 345797-347489 asmbl_14960 // Exon Skipping and Retention # skipped_exon 344496-346454 (orient:+) max_ev_support = 2 # retained_exon 345701-345796 (orient:+) max_ev_support = 1 scaffold_15 + retained_exons 345701-345796 asmbl_14960 scaffold_15 + intron_skips_exon 344496-346454 asmbl_14959 // Retained and Spliced Intron # retained_intron 389143-389240 (orient:+) max_ev_support = 3 # spliced_intron 389143-389240 (orient:+) max_ev_support = 2 scaffold_15 + intron 389143-389240 asmbl_14971,asmbl_14972,asmbl_14973 scaffold_15 + retained_intron 389143-389240 asmbl_14968,asmbl_14969 // Retained and Spliced Intron # retained_intron 389347-389455 (orient:+) max_ev_support = 1 # spliced_intron 389347-389455 (orient:+) max_ev_support = 3 scaffold_15 + intron 389347-389455 asmbl_14968,asmbl_14969,asmbl_14971 scaffold_15 + retained_intron 389347-389455 asmbl_14972,asmbl_14973 // Retained and Spliced Intron # retained_intron 400486-400509 (orient:+) max_ev_support = 3 # spliced_intron 400486-400509 (orient:+) max_ev_support = 1 scaffold_15 + intron 400486-400509 asmbl_14975 scaffold_15 + retained_intron 400486-400509 asmbl_14974 // Retained and Spliced Intron # retained_intron 522528-522575 (orient:+) max_ev_support = 1 # spliced_intron 522528-522575 (orient:+) max_ev_support = 1 scaffold_15 + intron 522528-522575 asmbl_14984 scaffold_15 + retained_intron 522528-522575 asmbl_14985 // Retained and Spliced Intron # retained_intron 1598964-1599034 (orient:+) max_ev_support = 1 # spliced_intron 1598964-1599034 (orient:+) max_ev_support = 2 scaffold_15 + intron 1598964-1599034 asmbl_15023 scaffold_15 + retained_intron 1598964-1599034 asmbl_15024 // Retained and Spliced Intron # retained_intron 1712462-1712546 (orient:+) max_ev_support = 1 # spliced_intron 1712462-1712546 (orient:+) max_ev_support = 2 scaffold_15 + intron 1712462-1712546 asmbl_15032,asmbl_15033,asmbl_15038 scaffold_15 + retained_intron 1712462-1712546 asmbl_15035,asmbl_15036,asmbl_15037 // Exon Skipping and Retention # skipped_exon 1961303-1961855 (orient:+) max_ev_support = 1 # retained_exon 1961658-1961770 (orient:+) max_ev_support = 1 scaffold_15 + retained_exons 1961658-1961770 asmbl_15040 scaffold_15 + intron_skips_exon 1961303-1961855 asmbl_15041 // Exon Skipping and Retention # skipped_exon 1962523-1963918 (orient:+) max_ev_support = 1 # retained_exon 1963609-1963689 (orient:+) max_ev_support = 1 scaffold_15 + retained_exons 1963609-1963689 asmbl_15042 scaffold_15 + intron_skips_exon 1962523-1963918 asmbl_15040,asmbl_15041 // Retained and Spliced Intron # retained_intron 2564009-2564591 (orient:+) max_ev_support = 1 # spliced_intron 2564009-2564591 (orient:+) max_ev_support = 1 scaffold_15 + intron 2564009-2564591 asmbl_15066,asmbl_15067 scaffold_15 + retained_intron 2564009-2564591 asmbl_15068 // Retained and Spliced Intron # retained_intron 2564142-2564591 (orient:+) max_ev_support = 1 # spliced_intron 2564142-2564591 (orient:+) max_ev_support = 2 scaffold_15 + intron 2564142-2564591 asmbl_15063 scaffold_15 + retained_intron 2564142-2564591 asmbl_15068 // Retained and Spliced Intron # retained_intron 2603301-2603322 (orient:+) max_ev_support = 3 # spliced_intron 2603301-2603322 (orient:+) max_ev_support = 1 scaffold_15 + intron 2603301-2603322 asmbl_15072 scaffold_15 + retained_intron 2603301-2603322 asmbl_15070,asmbl_15071 // Retained and Spliced Intron # retained_intron 2603367-2603410 (orient:+) max_ev_support = 3 # spliced_intron 2603367-2603410 (orient:+) max_ev_support = 1 scaffold_15 + intron 2603367-2603410 asmbl_15071,asmbl_15072 scaffold_15 + retained_intron 2603367-2603410 asmbl_15070 // Retained and Spliced Intron # retained_intron 2797848-2798115 (orient:+) max_ev_support = 2 # spliced_intron 2797848-2798115 (orient:+) max_ev_support = 1 scaffold_15 + intron 2797848-2798115 asmbl_15080 scaffold_15 + retained_intron 2797848-2798115 asmbl_15079 // Exon Skipping and Retention # skipped_exon 2797848-2798457 (orient:+) max_ev_support = 1 # retained_exon 2798116-2798143 (orient:+) max_ev_support = 1 scaffold_15 + retained_exons 2798116-2798143 asmbl_15080 scaffold_15 + intron_skips_exon 2797848-2798457 asmbl_15081 // Exon Skipping and Retention # skipped_exon 3898968-3900665 (orient:+) max_ev_support = 1 # retained_exon 3899298-3899355 (orient:+) max_ev_support = 3 scaffold_15 + retained_exons 3899298-3899355 asmbl_15111 scaffold_15 + intron_skips_exon 3898968-3900665 asmbl_15112 // Exon Skipping and Retention # skipped_exon 3917413-3919012 (orient:+) max_ev_support = 1 # retained_exon 3918068-3918098 (orient:+) max_ev_support = 2 scaffold_15 + retained_exons 3918068-3918098 asmbl_15114 scaffold_15 + intron_skips_exon 3917413-3919012 asmbl_15115 // Exon Skipping and Retention # skipped_exon 3916766-3918067 (orient:+) max_ev_support = 2 # retained_exon 3917382-3917412 (orient:+) max_ev_support = 1 scaffold_15 + retained_exons 3917382-3917412 asmbl_15115 scaffold_15 + intron_skips_exon 3916766-3918067 asmbl_15114 // Retained and Spliced Intron # retained_intron 4131199-4131226 (orient:+) max_ev_support = 2 # spliced_intron 4131199-4131226 (orient:+) max_ev_support = 1 scaffold_15 + intron 4131199-4131226 asmbl_15126 scaffold_15 + retained_intron 4131199-4131226 asmbl_15125 // Exon Skipping and Retention # skipped_exon 4230907-4231387 (orient:+) max_ev_support = 2 # retained_exon 4231073-4231265 (orient:+) max_ev_support = 2 scaffold_15 + retained_exons 4231073-4231265 asmbl_15127 scaffold_15 + intron_skips_exon 4230907-4231387 asmbl_15128,asmbl_15131,asmbl_15133,asmbl_15134 // Retained and Spliced Intron # retained_intron 4232612-4232777 (orient:+) max_ev_support = 2 # spliced_intron 4232612-4232777 (orient:+) max_ev_support = 2 scaffold_15 + intron 4232612-4232777 asmbl_15128,asmbl_15129,asmbl_15131,asmbl_15132,asmbl_15133,asmbl_15134,asmbl_15135 scaffold_15 + retained_intron 4232612-4232777 asmbl_15130 // Retained and Spliced Intron # retained_intron 4232365-4232536 (orient:+) max_ev_support = 1 # spliced_intron 4232365-4232536 (orient:+) max_ev_support = 2 scaffold_15 + intron 4232365-4232536 asmbl_15128,asmbl_15129,asmbl_15132,asmbl_15134,asmbl_15135 scaffold_15 + retained_intron 4232365-4232536 asmbl_15131,asmbl_15133 // Retained and Spliced Intron # retained_intron 4231931-4232179 (orient:+) max_ev_support = 1 # spliced_intron 4231931-4232179 (orient:+) max_ev_support = 2 scaffold_15 + intron 4231931-4232179 asmbl_15128,asmbl_15129,asmbl_15131,asmbl_15132,asmbl_15135 scaffold_15 + retained_intron 4231931-4232179 asmbl_15133,asmbl_15134 // Retained and Spliced Intron # retained_intron 4231185-4231387 (orient:+) max_ev_support = 1 # spliced_intron 4231185-4231387 (orient:+) max_ev_support = 2 scaffold_15 + intron 4231185-4231387 asmbl_15129,asmbl_15132 scaffold_15 + retained_intron 4231185-4231387 asmbl_15135 // Retained and Spliced Intron # retained_intron 4231266-4231387 (orient:+) max_ev_support = 1 # spliced_intron 4231266-4231387 (orient:+) max_ev_support = 2 scaffold_15 + intron 4231266-4231387 asmbl_15127 scaffold_15 + retained_intron 4231266-4231387 asmbl_15135 // Retained and Spliced Intron # retained_intron 4494181-4494312 (orient:+) max_ev_support = 2 # spliced_intron 4494181-4494312 (orient:+) max_ev_support = 2 scaffold_15 + intron 4494181-4494312 asmbl_15142,asmbl_15143,asmbl_15144,asmbl_15145,asmbl_15148 scaffold_15 + retained_intron 4494181-4494312 asmbl_15140,asmbl_15146 // Retained and Spliced Intron # retained_intron 4493750-4493846 (orient:+) max_ev_support = 1 # spliced_intron 4493750-4493846 (orient:+) max_ev_support = 2 scaffold_15 + intron 4493750-4493846 asmbl_15140,asmbl_15142,asmbl_15144,asmbl_15145,asmbl_15148 scaffold_15 + retained_intron 4493750-4493846 asmbl_15143,asmbl_15146 // Retained and Spliced Intron # retained_intron 4493112-4493215 (orient:+) max_ev_support = 1 # spliced_intron 4493112-4493215 (orient:+) max_ev_support = 2 scaffold_15 + intron 4493112-4493215 asmbl_15140,asmbl_15142,asmbl_15143,asmbl_15145,asmbl_15146,asmbl_15148 scaffold_15 + retained_intron 4493112-4493215 asmbl_15144 // Retained and Spliced Intron # retained_intron 4493364-4493480 (orient:+) max_ev_support = 1 # spliced_intron 4493364-4493480 (orient:+) max_ev_support = 2 scaffold_15 + intron 4493364-4493480 asmbl_15140,asmbl_15142,asmbl_15143,asmbl_15145,asmbl_15146,asmbl_15148 scaffold_15 + retained_intron 4493364-4493480 asmbl_15144 // Retained and Spliced Intron # retained_intron 4492518-4492646 (orient:+) max_ev_support = 1 # spliced_intron 4492518-4492646 (orient:+) max_ev_support = 2 scaffold_15 + intron 4492518-4492646 asmbl_15140,asmbl_15142,asmbl_15143,asmbl_15144,asmbl_15146,asmbl_15148 scaffold_15 + retained_intron 4492518-4492646 asmbl_15145 // Retained and Spliced Intron # retained_intron 4491295-4491494 (orient:+) max_ev_support = 1 # spliced_intron 4491295-4491494 (orient:+) max_ev_support = 2 scaffold_15 + intron 4491295-4491494 asmbl_15140,asmbl_15142,asmbl_15143,asmbl_15144,asmbl_15145,asmbl_15146,asmbl_15147 scaffold_15 + retained_intron 4491295-4491494 asmbl_15148 // Retained and Spliced Intron # retained_intron 4500541-4500727 (orient:+) max_ev_support = 2 # spliced_intron 4500541-4500727 (orient:+) max_ev_support = 2 scaffold_15 + intron 4500541-4500727 asmbl_15149,asmbl_15152,asmbl_15153 scaffold_15 + retained_intron 4500541-4500727 asmbl_15151 // Retained and Spliced Intron # retained_intron 4497290-4497450 (orient:+) max_ev_support = 1 # spliced_intron 4497290-4497450 (orient:+) max_ev_support = 2 scaffold_15 + intron 4497290-4497450 asmbl_15149 scaffold_15 + retained_intron 4497290-4497450 asmbl_15152 // Exon Skipping and Retention # skipped_exon 4566359-4566986 (orient:+) max_ev_support = 3 # retained_exon 4566557-4566617 (orient:+) max_ev_support = 3 scaffold_15 + retained_exons 4566557-4566617 asmbl_15159 scaffold_15 + intron_skips_exon 4566359-4566986 asmbl_15160,asmbl_15163 // Retained and Spliced Intron # retained_intron 4753368-4753541 (orient:+) max_ev_support = 2 # spliced_intron 4753368-4753541 (orient:+) max_ev_support = 2 scaffold_15 + intron 4753368-4753541 asmbl_15168 scaffold_15 + retained_intron 4753368-4753541 asmbl_15169,asmbl_15170 // Retained and Spliced Intron # retained_intron 4753209-4753331 (orient:+) max_ev_support = 2 # spliced_intron 4753209-4753331 (orient:+) max_ev_support = 2 scaffold_15 + intron 4753209-4753331 asmbl_15168,asmbl_15169 scaffold_15 + retained_intron 4753209-4753331 asmbl_15170 // Retained and Spliced Intron # retained_intron 4964468-4964665 (orient:+) max_ev_support = 1 # spliced_intron 4964468-4964665 (orient:+) max_ev_support = 2 scaffold_15 + intron 4964468-4964665 asmbl_15176,asmbl_15179,asmbl_15180,asmbl_15183 scaffold_15 + retained_intron 4964468-4964665 asmbl_15182 // Retained and Spliced Intron # retained_intron 4964484-4964665 (orient:+) max_ev_support = 1 # spliced_intron 4964484-4964665 (orient:+) max_ev_support = 1 scaffold_15 + intron 4964484-4964665 asmbl_15184 scaffold_15 + retained_intron 4964484-4964665 asmbl_15182 // Retained and Spliced Intron # retained_intron 4964556-4964665 (orient:+) max_ev_support = 1 # spliced_intron 4964556-4964665 (orient:+) max_ev_support = 2 scaffold_15 + intron 4964556-4964665 asmbl_15175,asmbl_15177,asmbl_15181 scaffold_15 + retained_intron 4964556-4964665 asmbl_15182 // Retained and Spliced Intron # retained_intron 5144744-5144821 (orient:+) max_ev_support = 1 # spliced_intron 5144744-5144821 (orient:+) max_ev_support = 2 scaffold_15 + intron 5144744-5144821 asmbl_15191,asmbl_15193 scaffold_15 + retained_intron 5144744-5144821 asmbl_15192 // Retained and Spliced Intron # retained_intron 5144985-5145081 (orient:+) max_ev_support = 1 # spliced_intron 5144985-5145081 (orient:+) max_ev_support = 2 scaffold_15 + intron 5144985-5145081 asmbl_15191,asmbl_15192 scaffold_15 + retained_intron 5144985-5145081 asmbl_15193 // Retained and Spliced Intron # retained_intron 5835875-5836379 (orient:+) max_ev_support = 3 # spliced_intron 5835875-5836379 (orient:+) max_ev_support = 2 scaffold_15 + intron 5835875-5836379 asmbl_15228 scaffold_15 + retained_intron 5835875-5836379 asmbl_15227 // Retained and Spliced Intron # retained_intron 6794505-6794579 (orient:+) max_ev_support = 1 # spliced_intron 6794505-6794579 (orient:+) max_ev_support = 3 scaffold_15 + intron 6794505-6794579 asmbl_15262,asmbl_15263 scaffold_15 + retained_intron 6794505-6794579 asmbl_15264 // Retained and Spliced Intron # retained_intron 6961759-6962168 (orient:+) max_ev_support = 2 # spliced_intron 6961759-6962168 (orient:+) max_ev_support = 1 scaffold_15 + intron 6961759-6962168 asmbl_15268,asmbl_15269 scaffold_15 + retained_intron 6961759-6962168 asmbl_15267 // Exon Skipping and Retention # skipped_exon 7303308-7303635 (orient:+) max_ev_support = 2 # retained_exon 7303426-7303476 (orient:+) max_ev_support = 2 scaffold_15 + retained_exons 7303426-7303476 asmbl_15286 scaffold_15 + intron_skips_exon 7303308-7303635 asmbl_15285 // Exon Skipping and Retention # skipped_exon 7792749-7793647 (orient:+) max_ev_support = 2 # retained_exon 7793233-7793349 (orient:+) max_ev_support = 3 scaffold_15 + retained_exons 7793233-7793349 asmbl_15298 scaffold_15 + intron_skips_exon 7792749-7793647 asmbl_15299 // Retained and Spliced Intron # retained_intron 7840903-7841007 (orient:+) max_ev_support = 1 # spliced_intron 7840903-7841007 (orient:+) max_ev_support = 2 scaffold_15 + intron 7840903-7841007 asmbl_15304,asmbl_15306 scaffold_15 + retained_intron 7840903-7841007 asmbl_15305 // Retained and Spliced Intron # retained_intron 8620031-8620119 (orient:+) max_ev_support = 2 # spliced_intron 8620031-8620119 (orient:+) max_ev_support = 2 scaffold_15 + intron 8620031-8620119 asmbl_15340,asmbl_15341,asmbl_15343,asmbl_15344 scaffold_15 + retained_intron 8620031-8620119 asmbl_15342 // Retained and Spliced Intron # retained_intron 8829496-8829673 (orient:+) max_ev_support = 2 # spliced_intron 8829496-8829673 (orient:+) max_ev_support = 2 scaffold_15 + intron 8829496-8829673 asmbl_15357 scaffold_15 + retained_intron 8829496-8829673 asmbl_15358,asmbl_15359 // Retained and Spliced Intron # retained_intron 8828920-8829390 (orient:+) max_ev_support = 2 # spliced_intron 8828920-8829390 (orient:+) max_ev_support = 3 scaffold_15 + intron 8828920-8829390 asmbl_15357,asmbl_15358 scaffold_15 + retained_intron 8828920-8829390 asmbl_15359 // Exon Skipping and Retention # skipped_exon 8984400-8986848 (orient:+) max_ev_support = 2 # retained_exon 8986430-8986483 (orient:+) max_ev_support = 2 scaffold_15 + retained_exons 8986430-8986483 asmbl_15372 scaffold_15 + intron_skips_exon 8984400-8986848 asmbl_15373 // Retained and Spliced Intron # retained_intron 9289598-9289814 (orient:+) max_ev_support = 1 # spliced_intron 9289598-9289814 (orient:+) max_ev_support = 1 scaffold_15 + intron 9289598-9289814 asmbl_15382,asmbl_15384,asmbl_15385 scaffold_15 + retained_intron 9289598-9289814 asmbl_15383 // Retained and Spliced Intron # retained_intron 9313817-9314020 (orient:+) max_ev_support = 1 # spliced_intron 9313817-9314020 (orient:+) max_ev_support = 2 scaffold_15 + intron 9313817-9314020 asmbl_15386 scaffold_15 + retained_intron 9313817-9314020 asmbl_15387 // Retained and Spliced Intron # retained_intron 9817941-9818374 (orient:+) max_ev_support = 3 # spliced_intron 9817941-9818374 (orient:+) max_ev_support = 2 scaffold_15 + intron 9817941-9818374 asmbl_15417,asmbl_15418 scaffold_15 + retained_intron 9817941-9818374 asmbl_15415,asmbl_15420 // Retained and Spliced Intron # retained_intron 9818455-9818660 (orient:+) max_ev_support = 3 # spliced_intron 9818455-9818660 (orient:+) max_ev_support = 2 scaffold_15 + intron 9818455-9818660 asmbl_15417,asmbl_15418 scaffold_15 + retained_intron 9818455-9818660 asmbl_15415,asmbl_15420 // Retained and Spliced Intron # retained_intron 9819517-9819607 (orient:+) max_ev_support = 3 # spliced_intron 9819517-9819607 (orient:+) max_ev_support = 2 scaffold_15 + intron 9819517-9819607 asmbl_15417,asmbl_15420 scaffold_15 + retained_intron 9819517-9819607 asmbl_15415,asmbl_15418 // Retained and Spliced Intron # retained_intron 9873560-9873882 (orient:+) max_ev_support = 1 # spliced_intron 9873560-9873882 (orient:+) max_ev_support = 2 scaffold_15 + intron 9873560-9873882 asmbl_15425,asmbl_15428,asmbl_15431 scaffold_15 + retained_intron 9873560-9873882 asmbl_15430 // Retained and Spliced Intron # retained_intron 10633902-10633978 (orient:+) max_ev_support = 2 # spliced_intron 10633902-10633978 (orient:+) max_ev_support = 1 scaffold_15 + intron 10633902-10633978 asmbl_15460 scaffold_15 + retained_intron 10633902-10633978 asmbl_15458,asmbl_15459 // Retained and Spliced Intron # retained_intron 10768425-10768689 (orient:+) max_ev_support = 1 # spliced_intron 10768425-10768689 (orient:+) max_ev_support = 2 scaffold_15 + intron 10768425-10768689 asmbl_15462,asmbl_15463,asmbl_15464,asmbl_15465 scaffold_15 + retained_intron 10768425-10768689 asmbl_15466 // Retained and Spliced Intron # retained_intron 10766606-10766774 (orient:+) max_ev_support = 1 # spliced_intron 10766606-10766774 (orient:+) max_ev_support = 2 scaffold_15 + intron 10766606-10766774 asmbl_15462,asmbl_15463,asmbl_15464,asmbl_15465,asmbl_15466 scaffold_15 + retained_intron 10766606-10766774 asmbl_15467 // Retained and Spliced Intron # retained_intron 11304106-11304275 (orient:+) max_ev_support = 2 # spliced_intron 11304106-11304275 (orient:+) max_ev_support = 2 scaffold_15 + intron 11304106-11304275 asmbl_15491,asmbl_15494,asmbl_15495,asmbl_15496 scaffold_15 + retained_intron 11304106-11304275 asmbl_15493 // Retained and Spliced Intron # retained_intron 11301555-11302007 (orient:+) max_ev_support = 1 # spliced_intron 11301555-11302007 (orient:+) max_ev_support = 2 scaffold_15 + intron 11301555-11302007 asmbl_15491,asmbl_15494 scaffold_15 + retained_intron 11301555-11302007 asmbl_15495 // Exon Skipping and Retention # skipped_exon 12030067-12032794 (orient:+) max_ev_support = 3 # retained_exon 12032101-12032194 (orient:+) max_ev_support = 3 scaffold_15 + retained_exons 12032101-12032194 asmbl_15513 scaffold_15 + intron_skips_exon 12030067-12032794 asmbl_15514,asmbl_15516 // Exon Skipping and Retention # skipped_exon 12039034-12039793 (orient:+) max_ev_support = 1 # retained_exon 12039326-12039514 (orient:+) max_ev_support = 1 scaffold_15 + retained_exons 12039326-12039514 asmbl_15518,asmbl_15519 scaffold_15 + intron_skips_exon 12039034-12039793 asmbl_15520 // Exon Skipping and Retention # skipped_exon 12123673-12125251 (orient:+) max_ev_support = 1 # retained_exon 12123802-12123873 (orient:+) max_ev_support = 2 scaffold_15 + retained_exons 12123802-12123873 asmbl_15540 scaffold_15 + intron_skips_exon 12123673-12125251 asmbl_15541 // Exon Skipping and Retention # skipped_exon 12421366-12422732 (orient:+) max_ev_support = 1 # retained_exon 12421558-12422504 (orient:+) max_ev_support = 2 scaffold_15 + retained_exons 12421558-12421729,12421934-12422504 asmbl_15558 scaffold_15 + intron_skips_exon 12421366-12422732 asmbl_15564 // Retained and Spliced Intron # retained_intron 12421366-12421557 (orient:+) max_ev_support = 1 # spliced_intron 12421366-12421557 (orient:+) max_ev_support = 2 scaffold_15 + intron 12421366-12421557 asmbl_15558,asmbl_15562 scaffold_15 + retained_intron 12421366-12421557 asmbl_15561,asmbl_15563 // Retained and Spliced Intron # retained_intron 12421366-12422732 (orient:+) max_ev_support = 1 # spliced_intron 12421366-12422732 (orient:+) max_ev_support = 1 scaffold_15 + intron 12421366-12422732 asmbl_15564 scaffold_15 + retained_intron 12421366-12422732 asmbl_15561 // Retained and Spliced Intron # retained_intron 12421730-12421933 (orient:+) max_ev_support = 1 # spliced_intron 12421730-12421933 (orient:+) max_ev_support = 2 scaffold_15 + intron 12421730-12421933 asmbl_15558,asmbl_15562 scaffold_15 + retained_intron 12421730-12421933 asmbl_15561,asmbl_15563 // Retained and Spliced Intron # retained_intron 12422505-12422732 (orient:+) max_ev_support = 1 # spliced_intron 12422505-12422732 (orient:+) max_ev_support = 2 scaffold_15 + intron 12422505-12422732 asmbl_15558,asmbl_15563 scaffold_15 + retained_intron 12422505-12422732 asmbl_15561,asmbl_15562 // Retained and Spliced Intron # retained_intron 12432664-12433619 (orient:+) max_ev_support = 2 # spliced_intron 12432664-12433619 (orient:+) max_ev_support = 2 scaffold_15 + intron 12432664-12433619 asmbl_15570,asmbl_15571,asmbl_15572,asmbl_15573 scaffold_15 + retained_intron 12432664-12433619 asmbl_15567,asmbl_15568,asmbl_15569 // Retained and Spliced Intron # retained_intron 12433731-12434069 (orient:+) max_ev_support = 2 # spliced_intron 12433731-12434069 (orient:+) max_ev_support = 2 scaffold_15 + intron 12433731-12434069 asmbl_15570,asmbl_15573 scaffold_15 + retained_intron 12433731-12434069 asmbl_15567,asmbl_15568,asmbl_15569,asmbl_15571,asmbl_15572 // Retained and Spliced Intron # retained_intron 12435253-12435567 (orient:+) max_ev_support = 2 # spliced_intron 12435253-12435567 (orient:+) max_ev_support = 2 scaffold_15 + intron 12435253-12435567 asmbl_15571,asmbl_15572,asmbl_15573 scaffold_15 + retained_intron 12435253-12435567 asmbl_15567,asmbl_15568,asmbl_15569 // Retained and Spliced Intron # retained_intron 12434240-12434471 (orient:+) max_ev_support = 1 # spliced_intron 12434240-12434471 (orient:+) max_ev_support = 2 scaffold_15 + intron 12434240-12434471 asmbl_15567,asmbl_15568,asmbl_15569,asmbl_15570,asmbl_15572,asmbl_15573 scaffold_15 + retained_intron 12434240-12434471 asmbl_15571 // Retained and Spliced Intron # retained_intron 12435740-12435952 (orient:+) max_ev_support = 1 # spliced_intron 12435740-12435952 (orient:+) max_ev_support = 1 scaffold_15 + intron 12435740-12435952 asmbl_15567,asmbl_15568,asmbl_15572 scaffold_15 + retained_intron 12435740-12435952 asmbl_15571 // Retained and Spliced Intron # retained_intron 12525670-12525837 (orient:+) max_ev_support = 2 # spliced_intron 12525670-12525837 (orient:+) max_ev_support = 2 scaffold_15 + intron 12525670-12525837 asmbl_15579 scaffold_15 + retained_intron 12525670-12525837 asmbl_15580 // Retained and Spliced Intron # retained_intron 12621910-12622004 (orient:+) max_ev_support = 3 # spliced_intron 12621910-12622004 (orient:+) max_ev_support = 1 scaffold_15 + intron 12621910-12622004 asmbl_15588 scaffold_15 + retained_intron 12621910-12622004 asmbl_15587 // Retained and Spliced Intron # retained_intron 12742577-12743313 (orient:+) max_ev_support = 1 # spliced_intron 12742577-12743313 (orient:+) max_ev_support = 2 scaffold_15 + intron 12742577-12743313 asmbl_15599 scaffold_15 + retained_intron 12742577-12743313 asmbl_15602 // Retained and Spliced Intron # retained_intron 12742614-12743313 (orient:+) max_ev_support = 1 # spliced_intron 12742614-12743313 (orient:+) max_ev_support = 2 scaffold_15 + intron 12742614-12743313 asmbl_15600 scaffold_15 + retained_intron 12742614-12743313 asmbl_15602 // Retained and Spliced Intron # retained_intron 12748286-12748489 (orient:+) max_ev_support = 1 # spliced_intron 12748286-12748489 (orient:+) max_ev_support = 2 scaffold_15 + intron 12748286-12748489 asmbl_15599,asmbl_15600,asmbl_15602 scaffold_15 + retained_intron 12748286-12748489 asmbl_15603 // Retained and Spliced Intron # retained_intron 12748652-12748931 (orient:+) max_ev_support = 1 # spliced_intron 12748652-12748931 (orient:+) max_ev_support = 2 scaffold_15 + intron 12748652-12748931 asmbl_15599,asmbl_15600,asmbl_15602 scaffold_15 + retained_intron 12748652-12748931 asmbl_15603 // Retained and Spliced Intron # retained_intron 13041931-13042295 (orient:+) max_ev_support = 2 # spliced_intron 13041931-13042295 (orient:+) max_ev_support = 3 scaffold_15 + intron 13041931-13042295 asmbl_15614 scaffold_15 + retained_intron 13041931-13042295 asmbl_15615,asmbl_15618 // Retained and Spliced Intron # retained_intron 13325950-13326951 (orient:+) max_ev_support = 2 # spliced_intron 13325950-13326951 (orient:+) max_ev_support = 2 scaffold_15 + intron 13325950-13326951 asmbl_15626,asmbl_15629 scaffold_15 + retained_intron 13325950-13326951 asmbl_15628,asmbl_15630,asmbl_15631,asmbl_15633,asmbl_15634,asmbl_15635,asmbl_15636,asmbl_15637 // Retained and Spliced Intron # retained_intron 13327077-13327471 (orient:+) max_ev_support = 2 # spliced_intron 13327077-13327471 (orient:+) max_ev_support = 1 scaffold_15 + intron 13327077-13327471 asmbl_15626 scaffold_15 + retained_intron 13327077-13327471 asmbl_15628,asmbl_15629,asmbl_15630,asmbl_15631,asmbl_15633,asmbl_15634,asmbl_15635,asmbl_15636,asmbl_15637 // Retained and Spliced Intron # retained_intron 13327570-13327726 (orient:+) max_ev_support = 2 # spliced_intron 13327570-13327726 (orient:+) max_ev_support = 1 scaffold_15 + intron 13327570-13327726 asmbl_15626,asmbl_15633,asmbl_15634,asmbl_15635,asmbl_15636,asmbl_15637 scaffold_15 + retained_intron 13327570-13327726 asmbl_15628,asmbl_15630,asmbl_15631 // Retained and Spliced Intron # retained_intron 13327877-13328035 (orient:+) max_ev_support = 2 # spliced_intron 13327877-13328035 (orient:+) max_ev_support = 1 scaffold_15 + intron 13327877-13328035 asmbl_15626,asmbl_15633,asmbl_15634,asmbl_15635,asmbl_15636,asmbl_15637 scaffold_15 + retained_intron 13327877-13328035 asmbl_15628,asmbl_15630,asmbl_15631 // Retained and Spliced Intron # retained_intron 13324710-13324894 (orient:+) max_ev_support = 2 # spliced_intron 13324710-13324894 (orient:+) max_ev_support = 2 scaffold_15 + intron 13324710-13324894 asmbl_15626,asmbl_15628,asmbl_15629,asmbl_15634,asmbl_15635 scaffold_15 + retained_intron 13324710-13324894 asmbl_15630,asmbl_15631,asmbl_15633,asmbl_15636,asmbl_15637 // Retained and Spliced Intron # retained_intron 13325003-13325087 (orient:+) max_ev_support = 2 # spliced_intron 13325003-13325087 (orient:+) max_ev_support = 2 scaffold_15 + intron 13325003-13325087 asmbl_15626,asmbl_15628,asmbl_15629,asmbl_15634,asmbl_15635,asmbl_15636 scaffold_15 + retained_intron 13325003-13325087 asmbl_15630,asmbl_15631,asmbl_15633,asmbl_15637 // Retained and Spliced Intron # retained_intron 13325170-13325463 (orient:+) max_ev_support = 2 # spliced_intron 13325170-13325463 (orient:+) max_ev_support = 2 scaffold_15 + intron 13325170-13325463 asmbl_15626,asmbl_15628,asmbl_15629,asmbl_15634 scaffold_15 + retained_intron 13325170-13325463 asmbl_15630,asmbl_15631,asmbl_15633,asmbl_15635,asmbl_15636,asmbl_15637 // Retained and Spliced Intron # retained_intron 13325591-13325794 (orient:+) max_ev_support = 2 # spliced_intron 13325591-13325794 (orient:+) max_ev_support = 2 scaffold_15 + intron 13325591-13325794 asmbl_15626,asmbl_15628,asmbl_15629,asmbl_15634 scaffold_15 + retained_intron 13325591-13325794 asmbl_15630,asmbl_15631,asmbl_15633,asmbl_15635,asmbl_15636,asmbl_15637 // Retained and Spliced Intron # retained_intron 13324142-13324642 (orient:+) max_ev_support = 2 # spliced_intron 13324142-13324642 (orient:+) max_ev_support = 2 scaffold_15 + intron 13324142-13324642 asmbl_15626,asmbl_15628,asmbl_15629,asmbl_15630,asmbl_15634,asmbl_15635,asmbl_15637 scaffold_15 + retained_intron 13324142-13324642 asmbl_15631,asmbl_15633,asmbl_15636 // Retained and Spliced Intron # retained_intron 13972358-13972548 (orient:+) max_ev_support = 2 # spliced_intron 13972358-13972548 (orient:+) max_ev_support = 3 scaffold_15 + intron 13972358-13972548 asmbl_15660,asmbl_15662 scaffold_15 + retained_intron 13972358-13972548 asmbl_15661 // Retained and Spliced Intron # retained_intron 13972065-13972165 (orient:+) max_ev_support = 1 # spliced_intron 13972065-13972165 (orient:+) max_ev_support = 3 scaffold_15 + intron 13972065-13972165 asmbl_15660 scaffold_15 + retained_intron 13972065-13972165 asmbl_15662 // Exon Skipping and Retention # skipped_exon 14510889-14513245 (orient:+) max_ev_support = 2 # retained_exon 14511002-14511039 (orient:+) max_ev_support = 2 scaffold_15 + retained_exons 14511002-14511039 asmbl_15685,asmbl_15686 scaffold_15 + intron_skips_exon 14510889-14513245 asmbl_15684 // Retained and Spliced Intron # retained_intron 14650043-14650231 (orient:+) max_ev_support = 1 # spliced_intron 14650043-14650231 (orient:+) max_ev_support = 2 scaffold_15 + intron 14650043-14650231 asmbl_15691 scaffold_15 + retained_intron 14650043-14650231 asmbl_15692 // Retained and Spliced Intron # retained_intron 14663329-14663440 (orient:+) max_ev_support = 2 # spliced_intron 14663329-14663440 (orient:+) max_ev_support = 1 scaffold_15 + intron 14663329-14663440 asmbl_15695 scaffold_15 + retained_intron 14663329-14663440 asmbl_15694 // Retained and Spliced Intron # retained_intron 14678979-14679166 (orient:+) max_ev_support = 3 # spliced_intron 14678979-14679166 (orient:+) max_ev_support = 3 scaffold_15 + intron 14678979-14679166 asmbl_15699 scaffold_15 + retained_intron 14678979-14679166 asmbl_15700 // Retained and Spliced Intron # retained_intron 14891299-14891623 (orient:+) max_ev_support = 2 # spliced_intron 14891299-14891623 (orient:+) max_ev_support = 3 scaffold_15 + intron 14891299-14891623 asmbl_15706 scaffold_15 + retained_intron 14891299-14891623 asmbl_15707,asmbl_15708 // Retained and Spliced Intron # retained_intron 15158080-15158445 (orient:+) max_ev_support = 2 # spliced_intron 15158080-15158445 (orient:+) max_ev_support = 1 scaffold_15 + intron 15158080-15158445 asmbl_15719,asmbl_15720 scaffold_15 + retained_intron 15158080-15158445 asmbl_15717,asmbl_15718 // Exon Skipping and Retention # skipped_exon 15184589-15185470 (orient:+) max_ev_support = 1 # retained_exon 15184893-15185114 (orient:+) max_ev_support = 3 scaffold_15 + retained_exons 15184893-15185114 asmbl_15725,asmbl_15727,asmbl_15728,asmbl_15729,asmbl_15730,asmbl_15731,asmbl_15732,asmbl_15734,asmbl_15735,asmbl_15739,asmbl_15741,asmbl_15742 scaffold_15 + intron_skips_exon 15184589-15185470 asmbl_15736,asmbl_15737,asmbl_15740 // Exon Skipping and Retention # skipped_exon 15188079-15189128 (orient:+) max_ev_support = 2 # retained_exon 15188654-15188737 (orient:+) max_ev_support = 3 scaffold_15 + retained_exons 15188654-15188737 asmbl_15725,asmbl_15735,asmbl_15740 scaffold_15 + intron_skips_exon 15188079-15189128 asmbl_15728,asmbl_15732,asmbl_15736,asmbl_15739,asmbl_15741,asmbl_15742 // Exon Skipping and Retention # skipped_exon 15188079-15189525 (orient:+) max_ev_support = 1 # retained_exon 15188654-15189219 (orient:+) max_ev_support = 3 scaffold_15 + retained_exons 15188654-15188737,15189129-15189219 asmbl_15725,asmbl_15735,asmbl_15740 scaffold_15 + intron_skips_exon 15188079-15189525 asmbl_15729 // Retained and Spliced Intron # retained_intron 15188079-15188653 (orient:+) max_ev_support = 2 # spliced_intron 15188079-15188653 (orient:+) max_ev_support = 3 scaffold_15 + intron 15188079-15188653 asmbl_15725,asmbl_15735,asmbl_15740 scaffold_15 + retained_intron 15188079-15188653 asmbl_15727,asmbl_15730,asmbl_15731,asmbl_15734,asmbl_15737 // Retained and Spliced Intron # retained_intron 15188079-15189128 (orient:+) max_ev_support = 2 # spliced_intron 15188079-15189128 (orient:+) max_ev_support = 2 scaffold_15 + intron 15188079-15189128 asmbl_15728,asmbl_15732,asmbl_15736,asmbl_15739,asmbl_15741,asmbl_15742 scaffold_15 + retained_intron 15188079-15189128 asmbl_15727,asmbl_15730,asmbl_15731,asmbl_15734,asmbl_15737 // Retained and Spliced Intron # retained_intron 15188079-15189525 (orient:+) max_ev_support = 2 # spliced_intron 15188079-15189525 (orient:+) max_ev_support = 1 scaffold_15 + intron 15188079-15189525 asmbl_15729 scaffold_15 + retained_intron 15188079-15189525 asmbl_15727,asmbl_15730,asmbl_15731,asmbl_15734,asmbl_15737 // Retained and Spliced Intron # retained_intron 15188738-15189128 (orient:+) max_ev_support = 2 # spliced_intron 15188738-15189128 (orient:+) max_ev_support = 3 scaffold_15 + intron 15188738-15189128 asmbl_15725,asmbl_15735,asmbl_15740 scaffold_15 + retained_intron 15188738-15189128 asmbl_15727,asmbl_15730,asmbl_15731,asmbl_15734,asmbl_15737 // Retained and Spliced Intron # retained_intron 15189220-15189525 (orient:+) max_ev_support = 2 # spliced_intron 15189220-15189525 (orient:+) max_ev_support = 3 scaffold_15 + intron 15189220-15189525 asmbl_15725,asmbl_15728,asmbl_15732,asmbl_15735,asmbl_15736,asmbl_15740,asmbl_15741,asmbl_15742 scaffold_15 + retained_intron 15189220-15189525 asmbl_15727,asmbl_15730,asmbl_15731,asmbl_15734,asmbl_15737,asmbl_15739 // Retained and Spliced Intron # retained_intron 15179285-15179381 (orient:+) max_ev_support = 1 # spliced_intron 15179285-15179381 (orient:+) max_ev_support = 1 scaffold_15 + intron 15179285-15179381 asmbl_15732,asmbl_15734 scaffold_15 + retained_intron 15179285-15179381 asmbl_15730,asmbl_15742 // Retained and Spliced Intron # retained_intron 15176771-15176878 (orient:+) max_ev_support = 1 # spliced_intron 15176771-15176878 (orient:+) max_ev_support = 3 scaffold_15 + intron 15176771-15176878 asmbl_15725,asmbl_15727,asmbl_15728,asmbl_15729,asmbl_15733,asmbl_15736,asmbl_15737,asmbl_15739,asmbl_15740 scaffold_15 + retained_intron 15176771-15176878 asmbl_15731,asmbl_15735,asmbl_15741 // Exon Skipping and Retention # skipped_exon 15320751-15323082 (orient:+) max_ev_support = 1 # retained_exon 15321517-15321639 (orient:+) max_ev_support = 3 scaffold_15 + retained_exons 15321517-15321639 asmbl_15747 scaffold_15 + intron_skips_exon 15320751-15323082 asmbl_15748 // Exon Skipping and Retention # skipped_exon 15321640-15324392 (orient:+) max_ev_support = 3 # retained_exon 15323083-15323205 (orient:+) max_ev_support = 1 scaffold_15 + retained_exons 15323083-15323205 asmbl_15748 scaffold_15 + intron_skips_exon 15321640-15324392 asmbl_15747 // Exon Skipping and Retention # skipped_exon 15345818-15347791 (orient:+) max_ev_support = 1 # retained_exon 15345897-15346020 (orient:+) max_ev_support = 1 scaffold_15 + retained_exons 15345897-15346020 asmbl_15753 scaffold_15 + intron_skips_exon 15345818-15347791 asmbl_15754 // Exon Skipping and Retention # skipped_exon 15346021-15347989 (orient:+) max_ev_support = 1 # retained_exon 15347792-15347915 (orient:+) max_ev_support = 1 scaffold_15 + retained_exons 15347792-15347915 asmbl_15754 scaffold_15 + intron_skips_exon 15346021-15347989 asmbl_15753 // Retained and Spliced Intron # retained_intron 15355010-15355115 (orient:+) max_ev_support = 2 # spliced_intron 15355010-15355115 (orient:+) max_ev_support = 2 scaffold_15 + intron 15355010-15355115 asmbl_15758,asmbl_15760,asmbl_15762 scaffold_15 + retained_intron 15355010-15355115 asmbl_15756,asmbl_15757,asmbl_15759 // Retained and Spliced Intron # retained_intron 15355053-15355143 (orient:+) max_ev_support = 2 # spliced_intron 15355053-15355143 (orient:+) max_ev_support = 2 scaffold_15 + intron 15355053-15355143 asmbl_15755,asmbl_15761 scaffold_15 + retained_intron 15355053-15355143 asmbl_15756,asmbl_15757,asmbl_15759 // Retained and Spliced Intron # retained_intron 15355271-15355388 (orient:+) max_ev_support = 2 # spliced_intron 15355271-15355388 (orient:+) max_ev_support = 2 scaffold_15 + intron 15355271-15355388 asmbl_15755 scaffold_15 + retained_intron 15355271-15355388 asmbl_15756,asmbl_15757,asmbl_15758,asmbl_15759,asmbl_15761,asmbl_15762 // Retained and Spliced Intron # retained_intron 15355271-15355426 (orient:+) max_ev_support = 2 # spliced_intron 15355271-15355426 (orient:+) max_ev_support = 1 scaffold_15 + intron 15355271-15355426 asmbl_15760 scaffold_15 + retained_intron 15355271-15355426 asmbl_15756,asmbl_15757,asmbl_15758,asmbl_15761,asmbl_15762 // Retained and Spliced Intron # retained_intron 15409801-15409903 (orient:+) max_ev_support = 2 # spliced_intron 15409801-15409903 (orient:+) max_ev_support = 2 scaffold_15 + intron 15409801-15409903 asmbl_15769,asmbl_15770,asmbl_15774 scaffold_15 + retained_intron 15409801-15409903 asmbl_15766,asmbl_15771,asmbl_15773 // Exon Skipping and Retention # skipped_exon 15409801-15410226 (orient:+) max_ev_support = 2 # retained_exon 15409904-15409992 (orient:+) max_ev_support = 2 scaffold_15 + retained_exons 15409904-15409992 asmbl_15769,asmbl_15770,asmbl_15774 scaffold_15 + intron_skips_exon 15409801-15410226 asmbl_15767 // Exon Skipping and Retention # skipped_exon 15409801-15410185 (orient:+) max_ev_support = 2 # retained_exon 15409904-15409992 (orient:+) max_ev_support = 2 scaffold_15 + retained_exons 15409904-15409992 asmbl_15769,asmbl_15770,asmbl_15774 scaffold_15 + intron_skips_exon 15409801-15410185 asmbl_15768 // Exon Skipping and Retention # skipped_exon 15409801-15410182 (orient:+) max_ev_support = 1 # retained_exon 15409904-15409992 (orient:+) max_ev_support = 2 scaffold_15 + retained_exons 15409904-15409992 asmbl_15769,asmbl_15770,asmbl_15774 scaffold_15 + intron_skips_exon 15409801-15410182 asmbl_15772 // Retained and Spliced Intron # retained_intron 15409801-15410182 (orient:+) max_ev_support = 2 # spliced_intron 15409801-15410182 (orient:+) max_ev_support = 1 scaffold_15 + intron 15409801-15410182 asmbl_15772 scaffold_15 + retained_intron 15409801-15410182 asmbl_15771 // Retained and Spliced Intron # retained_intron 15409801-15410185 (orient:+) max_ev_support = 2 # spliced_intron 15409801-15410185 (orient:+) max_ev_support = 2 scaffold_15 + intron 15409801-15410185 asmbl_15768 scaffold_15 + retained_intron 15409801-15410185 asmbl_15771 // Retained and Spliced Intron # retained_intron 15409801-15410226 (orient:+) max_ev_support = 2 # spliced_intron 15409801-15410226 (orient:+) max_ev_support = 2 scaffold_15 + intron 15409801-15410226 asmbl_15767 scaffold_15 + retained_intron 15409801-15410226 asmbl_15771 // Retained and Spliced Intron # retained_intron 15409993-15410182 (orient:+) max_ev_support = 2 # spliced_intron 15409993-15410182 (orient:+) max_ev_support = 2 scaffold_15 + intron 15409993-15410182 asmbl_15770,asmbl_15773 scaffold_15 + retained_intron 15409993-15410182 asmbl_15771 // Retained and Spliced Intron # retained_intron 15409993-15410185 (orient:+) max_ev_support = 2 # spliced_intron 15409993-15410185 (orient:+) max_ev_support = 2 scaffold_15 + intron 15409993-15410185 asmbl_15766,asmbl_15774 scaffold_15 + retained_intron 15409993-15410185 asmbl_15771 // Retained and Spliced Intron # retained_intron 15409993-15410226 (orient:+) max_ev_support = 2 # spliced_intron 15409993-15410226 (orient:+) max_ev_support = 2 scaffold_15 + intron 15409993-15410226 asmbl_15769 scaffold_15 + retained_intron 15409993-15410226 asmbl_15771 // Retained and Spliced Intron # retained_intron 15414145-15414258 (orient:+) max_ev_support = 3 # spliced_intron 15414145-15414258 (orient:+) max_ev_support = 2 scaffold_15 + intron 15414145-15414258 asmbl_15777,asmbl_15778,asmbl_15781,asmbl_15784,asmbl_15785 scaffold_15 + retained_intron 15414145-15414258 asmbl_15775,asmbl_15776 // Retained and Spliced Intron # retained_intron 15414145-15414286 (orient:+) max_ev_support = 3 # spliced_intron 15414145-15414286 (orient:+) max_ev_support = 1 scaffold_15 + intron 15414145-15414286 asmbl_15779,asmbl_15780,asmbl_15782,asmbl_15783 scaffold_15 + retained_intron 15414145-15414286 asmbl_15775,asmbl_15776 // Retained and Spliced Intron # retained_intron 15414405-15414510 (orient:+) max_ev_support = 3 # spliced_intron 15414405-15414510 (orient:+) max_ev_support = 2 scaffold_15 + intron 15414405-15414510 asmbl_15777,asmbl_15779,asmbl_15781,asmbl_15782,asmbl_15783,asmbl_15784 scaffold_15 + retained_intron 15414405-15414510 asmbl_15775,asmbl_15776,asmbl_15778,asmbl_15785 // Retained and Spliced Intron # retained_intron 15412571-15412679 (orient:+) max_ev_support = 2 # spliced_intron 15412571-15412679 (orient:+) max_ev_support = 1 scaffold_15 + intron 15412571-15412679 asmbl_15775,asmbl_15779,asmbl_15783 scaffold_15 + retained_intron 15412571-15412679 asmbl_15776,asmbl_15777,asmbl_15778,asmbl_15780,asmbl_15781,asmbl_15782,asmbl_15784,asmbl_15785 // Retained and Spliced Intron # retained_intron 15413379-15413488 (orient:+) max_ev_support = 2 # spliced_intron 15413379-15413488 (orient:+) max_ev_support = 1 scaffold_15 + intron 15413379-15413488 asmbl_15775,asmbl_15779,asmbl_15780,asmbl_15784 scaffold_15 + retained_intron 15413379-15413488 asmbl_15776,asmbl_15777,asmbl_15778,asmbl_15781,asmbl_15782,asmbl_15783,asmbl_15785 // Retained and Spliced Intron # retained_intron 15413602-15413826 (orient:+) max_ev_support = 2 # spliced_intron 15413602-15413826 (orient:+) max_ev_support = 1 scaffold_15 + intron 15413602-15413826 asmbl_15780,asmbl_15784,asmbl_15785 scaffold_15 + retained_intron 15413602-15413826 asmbl_15776,asmbl_15777,asmbl_15778,asmbl_15779,asmbl_15782 // Retained and Spliced Intron # retained_intron 15413654-15413826 (orient:+) max_ev_support = 2 # spliced_intron 15413654-15413826 (orient:+) max_ev_support = 1 scaffold_15 + intron 15413654-15413826 asmbl_15775,asmbl_15781,asmbl_15783 scaffold_15 + retained_intron 15413654-15413826 asmbl_15776,asmbl_15777,asmbl_15778,asmbl_15779,asmbl_15782 // Retained and Spliced Intron # retained_intron 15449482-15449702 (orient:+) max_ev_support = 4 # spliced_intron 15449482-15449702 (orient:+) max_ev_support = 2 scaffold_15 + intron 15449482-15449702 asmbl_15793,asmbl_15794,asmbl_15795 scaffold_15 + retained_intron 15449482-15449702 asmbl_15786 // Exon Skipping and Retention # skipped_exon 15450190-15450391 (orient:+) max_ev_support = 2 # retained_exon 15450277-15450340 (orient:+) max_ev_support = 2 scaffold_15 + retained_exons 15450277-15450340 asmbl_15786,asmbl_15793,asmbl_15794,asmbl_15795 scaffold_15 + intron_skips_exon 15450190-15450391 asmbl_15788 // Exon Skipping and Retention # skipped_exon 15448589-15449160 (orient:+) max_ev_support = 2 # retained_exon 15448667-15449028 (orient:+) max_ev_support = 2 scaffold_15 + retained_exons 15448667-15448725,15448930-15449028 asmbl_15793,asmbl_15794,asmbl_15795 scaffold_15 + intron_skips_exon 15448589-15449160 asmbl_15786 // Retained and Spliced Intron # retained_intron 15501375-15501520 (orient:+) max_ev_support = 2 # spliced_intron 15501375-15501520 (orient:+) max_ev_support = 3 scaffold_15 + intron 15501375-15501520 asmbl_15799,asmbl_15801 scaffold_15 + retained_intron 15501375-15501520 asmbl_15800 // Retained and Spliced Intron # retained_intron 15502347-15502438 (orient:+) max_ev_support = 2 # spliced_intron 15502347-15502438 (orient:+) max_ev_support = 3 scaffold_15 + intron 15502347-15502438 asmbl_15799,asmbl_15800,asmbl_15801,asmbl_15803,asmbl_15804 scaffold_15 + retained_intron 15502347-15502438 asmbl_15802 // Retained and Spliced Intron # retained_intron 15502183-15502253 (orient:+) max_ev_support = 1 # spliced_intron 15502183-15502253 (orient:+) max_ev_support = 3 scaffold_15 + intron 15502183-15502253 asmbl_15799,asmbl_15800,asmbl_15801 scaffold_15 + retained_intron 15502183-15502253 asmbl_15803,asmbl_15804 // Retained and Spliced Intron # retained_intron 15501981-15502092 (orient:+) max_ev_support = 1 # spliced_intron 15501981-15502092 (orient:+) max_ev_support = 3 scaffold_15 + intron 15501981-15502092 asmbl_15799,asmbl_15800,asmbl_15801,asmbl_15803 scaffold_15 + retained_intron 15501981-15502092 asmbl_15804 // Exon Skipping and Retention # skipped_exon 15761181-15761965 (orient:+) max_ev_support = 3 # retained_exon 15761550-15761726 (orient:+) max_ev_support = 3 scaffold_15 + retained_exons 15761550-15761726 asmbl_15817 scaffold_15 + intron_skips_exon 15761181-15761965 asmbl_15818 // Exon Skipping and Retention # skipped_exon 15855759-15857174 (orient:+) max_ev_support = 3 # retained_exon 15856434-15856547 (orient:+) max_ev_support = 3 scaffold_15 + retained_exons 15856434-15856547 asmbl_15819,asmbl_15820,asmbl_15821,asmbl_15823,asmbl_15824 scaffold_15 + intron_skips_exon 15855759-15857174 asmbl_15822,asmbl_15825,asmbl_15828,asmbl_15829 // Exon Skipping and Retention # skipped_exon 15857347-15857984 (orient:+) max_ev_support = 3 # retained_exon 15857506-15857571 (orient:+) max_ev_support = 3 scaffold_15 + retained_exons 15857506-15857571 asmbl_15819,asmbl_15825,asmbl_15828 scaffold_15 + intron_skips_exon 15857347-15857984 asmbl_15820 // Retained and Spliced Intron # retained_intron 15857347-15857502 (orient:+) max_ev_support = 2 # spliced_intron 15857347-15857502 (orient:+) max_ev_support = 3 scaffold_15 + intron 15857347-15857502 asmbl_15821,asmbl_15822,asmbl_15823,asmbl_15827,asmbl_15829 scaffold_15 + retained_intron 15857347-15857502 asmbl_15824,asmbl_15826 // Retained and Spliced Intron # retained_intron 15857347-15857505 (orient:+) max_ev_support = 2 # spliced_intron 15857347-15857505 (orient:+) max_ev_support = 3 scaffold_15 + intron 15857347-15857505 asmbl_15819,asmbl_15825,asmbl_15828 scaffold_15 + retained_intron 15857347-15857505 asmbl_15824,asmbl_15826 // Retained and Spliced Intron # retained_intron 15857347-15857984 (orient:+) max_ev_support = 2 # spliced_intron 15857347-15857984 (orient:+) max_ev_support = 3 scaffold_15 + intron 15857347-15857984 asmbl_15820 scaffold_15 + retained_intron 15857347-15857984 asmbl_15824,asmbl_15826 // Retained and Spliced Intron # retained_intron 15857572-15857984 (orient:+) max_ev_support = 2 # spliced_intron 15857572-15857984 (orient:+) max_ev_support = 3 scaffold_15 + intron 15857572-15857984 asmbl_15819,asmbl_15821,asmbl_15822,asmbl_15823,asmbl_15825,asmbl_15828,asmbl_15829 scaffold_15 + retained_intron 15857572-15857984 asmbl_15824,asmbl_15826 // Retained and Spliced Intron # retained_intron 15856548-15857174 (orient:+) max_ev_support = 1 # spliced_intron 15856548-15857174 (orient:+) max_ev_support = 3 scaffold_15 + intron 15856548-15857174 asmbl_15819,asmbl_15820,asmbl_15821,asmbl_15823,asmbl_15824 scaffold_15 + retained_intron 15856548-15857174 asmbl_15826,asmbl_15827 // Retained and Spliced Intron # retained_intron 15914237-15914412 (orient:+) max_ev_support = 2 # spliced_intron 15914237-15914412 (orient:+) max_ev_support = 2 scaffold_15 + intron 15914237-15914412 asmbl_15842,asmbl_15846 scaffold_15 + retained_intron 15914237-15914412 asmbl_15843 // Retained and Spliced Intron # retained_intron 15917540-15917607 (orient:+) max_ev_support = 2 # spliced_intron 15917540-15917607 (orient:+) max_ev_support = 3 scaffold_15 + intron 15917540-15917607 asmbl_15841,asmbl_15846 scaffold_15 + retained_intron 15917540-15917607 asmbl_15845,asmbl_15847 // Exon Skipping and Retention # skipped_exon 357-1828 (orient:-) max_ev_support = 1 # retained_exon 519-1660 (orient:-) max_ev_support = 1 scaffold_1545 - retained_exons 519-722,860-1171,1251-1358,1556-1660 asmbl_15970 scaffold_1545 - intron_skips_exon 357-1828 asmbl_15971 // Exon Skipping and Retention # skipped_exon 101-1310 (orient:-) max_ev_support = 1 # retained_exon 333-478 (orient:-) max_ev_support = 1 scaffold_1555 - retained_exons 333-478 asmbl_15974 scaffold_1555 - intron_skips_exon 101-1310 asmbl_15975 // Exon Skipping and Retention # skipped_exon 479-1785 (orient:-) max_ev_support = 1 # retained_exon 1311-1456 (orient:-) max_ev_support = 1 scaffold_1555 - retained_exons 1311-1456 asmbl_15975 scaffold_1555 - intron_skips_exon 479-1785 asmbl_15974 // Retained and Spliced Intron # retained_intron 116383-116577 (orient:+) max_ev_support = 2 # spliced_intron 116383-116577 (orient:+) max_ev_support = 4 scaffold_16 + intron 116383-116577 asmbl_15994 scaffold_16 + retained_intron 116383-116577 asmbl_15995 // Exon Skipping and Retention # skipped_exon 125457-125887 (orient:+) max_ev_support = 3 # retained_exon 125551-125642 (orient:+) max_ev_support = 3 scaffold_16 + retained_exons 125551-125642 asmbl_15996 scaffold_16 + intron_skips_exon 125457-125887 asmbl_15997,asmbl_16000 // Retained and Spliced Intron # retained_intron 125457-125550 (orient:+) max_ev_support = 2 # spliced_intron 125457-125550 (orient:+) max_ev_support = 3 scaffold_16 + intron 125457-125550 asmbl_15996 scaffold_16 + retained_intron 125457-125550 asmbl_15998,asmbl_15999 // Retained and Spliced Intron # retained_intron 125457-125614 (orient:+) max_ev_support = 2 # spliced_intron 125457-125614 (orient:+) max_ev_support = 1 scaffold_16 + intron 125457-125614 asmbl_16001 scaffold_16 + retained_intron 125457-125614 asmbl_15998,asmbl_15999 // Retained and Spliced Intron # retained_intron 125457-125887 (orient:+) max_ev_support = 2 # spliced_intron 125457-125887 (orient:+) max_ev_support = 3 scaffold_16 + intron 125457-125887 asmbl_15997,asmbl_16000 scaffold_16 + retained_intron 125457-125887 asmbl_15999 // Retained and Spliced Intron # retained_intron 125643-125887 (orient:+) max_ev_support = 2 # spliced_intron 125643-125887 (orient:+) max_ev_support = 3 scaffold_16 + intron 125643-125887 asmbl_15996,asmbl_15998,asmbl_16001 scaffold_16 + retained_intron 125643-125887 asmbl_15999 // Retained and Spliced Intron # retained_intron 145688-145807 (orient:+) max_ev_support = 1 # spliced_intron 145688-145807 (orient:+) max_ev_support = 2 scaffold_16 + intron 145688-145807 asmbl_16002 scaffold_16 + retained_intron 145688-145807 asmbl_16003 // Retained and Spliced Intron # retained_intron 205536-205755 (orient:+) max_ev_support = 3 # spliced_intron 205536-205755 (orient:+) max_ev_support = 2 scaffold_16 + intron 205536-205755 asmbl_16005 scaffold_16 + retained_intron 205536-205755 asmbl_16004,asmbl_16006 // Exon Skipping and Retention # skipped_exon 206267-206971 (orient:+) max_ev_support = 3 # retained_exon 206369-206450 (orient:+) max_ev_support = 2 scaffold_16 + retained_exons 206369-206450 asmbl_16006 scaffold_16 + intron_skips_exon 206267-206971 asmbl_16004,asmbl_16005 // Retained and Spliced Intron # retained_intron 290653-291015 (orient:+) max_ev_support = 3 # spliced_intron 290653-291015 (orient:+) max_ev_support = 2 scaffold_16 + intron 290653-291015 asmbl_16016,asmbl_16017,asmbl_16018,asmbl_16019,asmbl_16020 scaffold_16 + retained_intron 290653-291015 asmbl_16015 // Exon Skipping and Retention # skipped_exon 318247-318842 (orient:+) max_ev_support = 3 # retained_exon 318495-318641 (orient:+) max_ev_support = 2 scaffold_16 + retained_exons 318495-318641 asmbl_16025 scaffold_16 + intron_skips_exon 318247-318842 asmbl_16024 // Retained and Spliced Intron # retained_intron 318642-318842 (orient:+) max_ev_support = 1 # spliced_intron 318642-318842 (orient:+) max_ev_support = 2 scaffold_16 + intron 318642-318842 asmbl_16025 scaffold_16 + retained_intron 318642-318842 asmbl_16026 // Exon Skipping and Retention # skipped_exon 672773-673471 (orient:+) max_ev_support = 3 # retained_exon 672866-672891 (orient:+) max_ev_support = 3 scaffold_16 + retained_exons 672866-672891 asmbl_16032,asmbl_16036 scaffold_16 + intron_skips_exon 672773-673471 asmbl_16034 // Retained and Spliced Intron # retained_intron 672773-672865 (orient:+) max_ev_support = 3 # spliced_intron 672773-672865 (orient:+) max_ev_support = 3 scaffold_16 + intron 672773-672865 asmbl_16032,asmbl_16036 scaffold_16 + retained_intron 672773-672865 asmbl_16033,asmbl_16035 // Retained and Spliced Intron # retained_intron 787406-787665 (orient:+) max_ev_support = 1 # spliced_intron 787406-787665 (orient:+) max_ev_support = 2 scaffold_16 + intron 787406-787665 asmbl_16048,asmbl_16050,asmbl_16052 scaffold_16 + retained_intron 787406-787665 asmbl_16049,asmbl_16051 // Retained and Spliced Intron # retained_intron 795167-795376 (orient:+) max_ev_support = 2 # spliced_intron 795167-795376 (orient:+) max_ev_support = 2 scaffold_16 + intron 795167-795376 asmbl_16053 scaffold_16 + retained_intron 795167-795376 asmbl_16054 // Retained and Spliced Intron # retained_intron 1510085-1511404 (orient:+) max_ev_support = 2 # spliced_intron 1510085-1511404 (orient:+) max_ev_support = 1 scaffold_16 + intron 1510085-1511404 asmbl_16083,asmbl_16084 scaffold_16 + retained_intron 1510085-1511404 asmbl_16082 // Retained and Spliced Intron # retained_intron 1510638-1511404 (orient:+) max_ev_support = 2 # spliced_intron 1510638-1511404 (orient:+) max_ev_support = 1 scaffold_16 + intron 1510638-1511404 asmbl_16085 scaffold_16 + retained_intron 1510638-1511404 asmbl_16082 // Exon Skipping and Retention # skipped_exon 1777457-1777810 (orient:+) max_ev_support = 3 # retained_exon 1777656-1777691 (orient:+) max_ev_support = 3 scaffold_16 + retained_exons 1777656-1777691 asmbl_16086,asmbl_16087,asmbl_16093 scaffold_16 + intron_skips_exon 1777457-1777810 asmbl_16088 // Exon Skipping and Retention # skipped_exon 1779104-1781016 (orient:+) max_ev_support = 2 # retained_exon 1779585-1779628 (orient:+) max_ev_support = 2 scaffold_16 + retained_exons 1779585-1779628 asmbl_16087 scaffold_16 + intron_skips_exon 1779104-1781016 asmbl_16088 // Retained and Spliced Intron # retained_intron 2172434-2173338 (orient:+) max_ev_support = 2 # spliced_intron 2172434-2173338 (orient:+) max_ev_support = 1 scaffold_16 + intron 2172434-2173338 asmbl_16116 scaffold_16 + retained_intron 2172434-2173338 asmbl_16111,asmbl_16114 // Retained and Spliced Intron # retained_intron 2172434-2173787 (orient:+) max_ev_support = 2 # spliced_intron 2172434-2173787 (orient:+) max_ev_support = 2 scaffold_16 + intron 2172434-2173787 asmbl_16112 scaffold_16 + retained_intron 2172434-2173787 asmbl_16111,asmbl_16114 // Exon Skipping and Retention # skipped_exon 2215678-2216158 (orient:+) max_ev_support = 1 # retained_exon 2215860-2215961 (orient:+) max_ev_support = 3 scaffold_16 + retained_exons 2215860-2215961 asmbl_16123 scaffold_16 + intron_skips_exon 2215678-2216158 asmbl_16124 // Retained and Spliced Intron # retained_intron 2215678-2215859 (orient:+) max_ev_support = 1 # spliced_intron 2215678-2215859 (orient:+) max_ev_support = 3 scaffold_16 + intron 2215678-2215859 asmbl_16123 scaffold_16 + retained_intron 2215678-2215859 asmbl_16125 // Retained and Spliced Intron # retained_intron 2571074-2571165 (orient:+) max_ev_support = 1 # spliced_intron 2571074-2571165 (orient:+) max_ev_support = 1 scaffold_16 + intron 2571074-2571165 asmbl_16131 scaffold_16 + retained_intron 2571074-2571165 asmbl_16130 // Retained and Spliced Intron # retained_intron 3707062-3707156 (orient:+) max_ev_support = 2 # spliced_intron 3707062-3707156 (orient:+) max_ev_support = 2 scaffold_16 + intron 3707062-3707156 asmbl_16147,asmbl_16149,asmbl_16150 scaffold_16 + retained_intron 3707062-3707156 asmbl_16148 // Retained and Spliced Intron # retained_intron 3706316-3706582 (orient:+) max_ev_support = 1 # spliced_intron 3706316-3706582 (orient:+) max_ev_support = 2 scaffold_16 + intron 3706316-3706582 asmbl_16147 scaffold_16 + retained_intron 3706316-3706582 asmbl_16149 // Retained and Spliced Intron # retained_intron 3706689-3706988 (orient:+) max_ev_support = 1 # spliced_intron 3706689-3706988 (orient:+) max_ev_support = 2 scaffold_16 + intron 3706689-3706988 asmbl_16147,asmbl_16149 scaffold_16 + retained_intron 3706689-3706988 asmbl_16150 // Retained and Spliced Intron # retained_intron 4095144-4095461 (orient:+) max_ev_support = 1 # spliced_intron 4095144-4095461 (orient:+) max_ev_support = 1 scaffold_16 + intron 4095144-4095461 asmbl_16169,asmbl_16174 scaffold_16 + retained_intron 4095144-4095461 asmbl_16175,asmbl_16176 // Retained and Spliced Intron # retained_intron 4095539-4095747 (orient:+) max_ev_support = 1 # spliced_intron 4095539-4095747 (orient:+) max_ev_support = 1 scaffold_16 + intron 4095539-4095747 asmbl_16169,asmbl_16174 scaffold_16 + retained_intron 4095539-4095747 asmbl_16176 // Retained and Spliced Intron # retained_intron 4095539-4096600 (orient:+) max_ev_support = 1 # spliced_intron 4095539-4096600 (orient:+) max_ev_support = 1 scaffold_16 + intron 4095539-4096600 asmbl_16175 scaffold_16 + retained_intron 4095539-4096600 asmbl_16176 // Retained and Spliced Intron # retained_intron 4655336-4655551 (orient:+) max_ev_support = 2 # spliced_intron 4655336-4655551 (orient:+) max_ev_support = 2 scaffold_16 + intron 4655336-4655551 asmbl_16193,asmbl_16194 scaffold_16 + retained_intron 4655336-4655551 asmbl_16195 // Exon Skipping and Retention # skipped_exon 4721461-4721792 (orient:+) max_ev_support = 1 # retained_exon 4721588-4721704 (orient:+) max_ev_support = 2 scaffold_16 + retained_exons 4721588-4721704 asmbl_16198,asmbl_16199 scaffold_16 + intron_skips_exon 4721461-4721792 asmbl_16200 // Retained and Spliced Intron # retained_intron 5395173-5395337 (orient:+) max_ev_support = 2 # spliced_intron 5395173-5395337 (orient:+) max_ev_support = 3 scaffold_16 + intron 5395173-5395337 asmbl_16211,asmbl_16213,asmbl_16214 scaffold_16 + retained_intron 5395173-5395337 asmbl_16212 // Retained and Spliced Intron # retained_intron 5393917-5394344 (orient:+) max_ev_support = 1 # spliced_intron 5393917-5394344 (orient:+) max_ev_support = 3 scaffold_16 + intron 5393917-5394344 asmbl_16211 scaffold_16 + retained_intron 5393917-5394344 asmbl_16213 // Retained and Spliced Intron # retained_intron 5394585-5394936 (orient:+) max_ev_support = 1 # spliced_intron 5394585-5394936 (orient:+) max_ev_support = 3 scaffold_16 + intron 5394585-5394936 asmbl_16211,asmbl_16213 scaffold_16 + retained_intron 5394585-5394936 asmbl_16214 // Retained and Spliced Intron # retained_intron 5395039-5395131 (orient:+) max_ev_support = 1 # spliced_intron 5395039-5395131 (orient:+) max_ev_support = 3 scaffold_16 + intron 5395039-5395131 asmbl_16211,asmbl_16213 scaffold_16 + retained_intron 5395039-5395131 asmbl_16214 // Retained and Spliced Intron # retained_intron 5754391-5755434 (orient:+) max_ev_support = 3 # spliced_intron 5754391-5755434 (orient:+) max_ev_support = 2 scaffold_16 + intron 5754391-5755434 asmbl_16223,asmbl_16225 scaffold_16 + retained_intron 5754391-5755434 asmbl_16222,asmbl_16224 // Exon Skipping and Retention # skipped_exon 6118442-6119000 (orient:+) max_ev_support = 1 # retained_exon 6118754-6118853 (orient:+) max_ev_support = 2 scaffold_16 + retained_exons 6118754-6118853 asmbl_16267,asmbl_16268,asmbl_16270 scaffold_16 + intron_skips_exon 6118442-6119000 asmbl_16269 // Retained and Spliced Intron # retained_intron 6135997-6136065 (orient:+) max_ev_support = 2 # spliced_intron 6135997-6136065 (orient:+) max_ev_support = 2 scaffold_16 + intron 6135997-6136065 asmbl_16275,asmbl_16277 scaffold_16 + retained_intron 6135997-6136065 asmbl_16276 // Retained and Spliced Intron # retained_intron 6135129-6135279 (orient:+) max_ev_support = 1 # spliced_intron 6135129-6135279 (orient:+) max_ev_support = 2 scaffold_16 + intron 6135129-6135279 asmbl_16275,asmbl_16276 scaffold_16 + retained_intron 6135129-6135279 asmbl_16277 // Exon Skipping and Retention # skipped_exon 6143876-6144400 (orient:+) max_ev_support = 1 # retained_exon 6144210-6144351 (orient:+) max_ev_support = 2 scaffold_16 + retained_exons 6144210-6144351 asmbl_16278,asmbl_16279,asmbl_16280,asmbl_16281 scaffold_16 + intron_skips_exon 6143876-6144400 asmbl_16283,asmbl_16284 // Retained and Spliced Intron # retained_intron 6149425-6149506 (orient:+) max_ev_support = 1 # spliced_intron 6149425-6149506 (orient:+) max_ev_support = 1 scaffold_16 + intron 6149425-6149506 asmbl_16279,asmbl_16283 scaffold_16 + retained_intron 6149425-6149506 asmbl_16280 // Exon Skipping and Retention # skipped_exon 6144352-6144917 (orient:+) max_ev_support = 2 # retained_exon 6144401-6144542 (orient:+) max_ev_support = 1 scaffold_16 + retained_exons 6144401-6144542 asmbl_16283,asmbl_16284 scaffold_16 + intron_skips_exon 6144352-6144917 asmbl_16278,asmbl_16279,asmbl_16280,asmbl_16281 // Retained and Spliced Intron # retained_intron 6193425-6193670 (orient:+) max_ev_support = 2 # spliced_intron 6193425-6193670 (orient:+) max_ev_support = 2 scaffold_16 + intron 6193425-6193670 asmbl_16293 scaffold_16 + retained_intron 6193425-6193670 asmbl_16292,asmbl_16294 // Retained and Spliced Intron # retained_intron 6196265-6196569 (orient:+) max_ev_support = 1 # spliced_intron 6196265-6196569 (orient:+) max_ev_support = 2 scaffold_16 + intron 6196265-6196569 asmbl_16292,asmbl_16293,asmbl_16297 scaffold_16 + retained_intron 6196265-6196569 asmbl_16294 // Retained and Spliced Intron # retained_intron 6195012-6195163 (orient:+) max_ev_support = 1 # spliced_intron 6195012-6195163 (orient:+) max_ev_support = 2 scaffold_16 + intron 6195012-6195163 asmbl_16292,asmbl_16293,asmbl_16294 scaffold_16 + retained_intron 6195012-6195163 asmbl_16295,asmbl_16297 // Retained and Spliced Intron # retained_intron 6195725-6195800 (orient:+) max_ev_support = 1 # spliced_intron 6195725-6195800 (orient:+) max_ev_support = 2 scaffold_16 + intron 6195725-6195800 asmbl_16292,asmbl_16293,asmbl_16294 scaffold_16 + retained_intron 6195725-6195800 asmbl_16297 // Retained and Spliced Intron # retained_intron 6198531-6198916 (orient:+) max_ev_support = 2 # spliced_intron 6198531-6198916 (orient:+) max_ev_support = 1 scaffold_16 + intron 6198531-6198916 asmbl_16300 scaffold_16 + retained_intron 6198531-6198916 asmbl_16298 // Retained and Spliced Intron # retained_intron 6199474-6199753 (orient:+) max_ev_support = 2 # spliced_intron 6199474-6199753 (orient:+) max_ev_support = 2 scaffold_16 + intron 6199474-6199753 asmbl_16298,asmbl_16300 scaffold_16 + retained_intron 6199474-6199753 asmbl_16299 // Retained and Spliced Intron # retained_intron 6534625-6536084 (orient:+) max_ev_support = 5 # spliced_intron 6534625-6536084 (orient:+) max_ev_support = 3 scaffold_16 + intron 6534625-6536084 asmbl_16310 scaffold_16 + retained_intron 6534625-6536084 asmbl_16309 // Exon Skipping and Retention # skipped_exon 7097030-7097963 (orient:+) max_ev_support = 2 # retained_exon 7097283-7097405 (orient:+) max_ev_support = 2 scaffold_16 + retained_exons 7097283-7097405 asmbl_16323 scaffold_16 + intron_skips_exon 7097030-7097963 asmbl_16324 // Exon Skipping and Retention # skipped_exon 7277120-7278374 (orient:+) max_ev_support = 1 # retained_exon 7277693-7278101 (orient:+) max_ev_support = 2 scaffold_16 + retained_exons 7277693-7277823,7277977-7278101 asmbl_16331 scaffold_16 + intron_skips_exon 7277120-7278374 asmbl_16332 // Retained and Spliced Intron # retained_intron 7520401-7520519 (orient:+) max_ev_support = 1 # spliced_intron 7520401-7520519 (orient:+) max_ev_support = 2 scaffold_16 + intron 7520401-7520519 asmbl_16341 scaffold_16 + retained_intron 7520401-7520519 asmbl_16342 // Retained and Spliced Intron # retained_intron 7910028-7910131 (orient:+) max_ev_support = 2 # spliced_intron 7910028-7910131 (orient:+) max_ev_support = 3 scaffold_16 + intron 7910028-7910131 asmbl_16360 scaffold_16 + retained_intron 7910028-7910131 asmbl_16361,asmbl_16362 // Retained and Spliced Intron # retained_intron 7910151-7910238 (orient:+) max_ev_support = 2 # spliced_intron 7910151-7910238 (orient:+) max_ev_support = 3 scaffold_16 + intron 7910151-7910238 asmbl_16360 scaffold_16 + retained_intron 7910151-7910238 asmbl_16361,asmbl_16362 // Retained and Spliced Intron # retained_intron 7910328-7910505 (orient:+) max_ev_support = 2 # spliced_intron 7910328-7910505 (orient:+) max_ev_support = 3 scaffold_16 + intron 7910328-7910505 asmbl_16360,asmbl_16362 scaffold_16 + retained_intron 7910328-7910505 asmbl_16361 // Retained and Spliced Intron # retained_intron 7910628-7911984 (orient:+) max_ev_support = 1 # spliced_intron 7910628-7911984 (orient:+) max_ev_support = 3 scaffold_16 + intron 7910628-7911984 asmbl_16360 scaffold_16 + retained_intron 7910628-7911984 asmbl_16362 // Retained and Spliced Intron # retained_intron 8042887-8043037 (orient:+) max_ev_support = 3 # spliced_intron 8042887-8043037 (orient:+) max_ev_support = 2 scaffold_16 + intron 8042887-8043037 asmbl_16370,asmbl_16374 scaffold_16 + retained_intron 8042887-8043037 asmbl_16369,asmbl_16372,asmbl_16373 // Retained and Spliced Intron # retained_intron 8294415-8294498 (orient:+) max_ev_support = 2 # spliced_intron 8294415-8294498 (orient:+) max_ev_support = 2 scaffold_16 + intron 8294415-8294498 asmbl_16387 scaffold_16 + retained_intron 8294415-8294498 asmbl_16388 // Retained and Spliced Intron # retained_intron 8296144-8296212 (orient:+) max_ev_support = 1 # spliced_intron 8296144-8296212 (orient:+) max_ev_support = 1 scaffold_16 + intron 8296144-8296212 asmbl_16387 scaffold_16 + retained_intron 8296144-8296212 asmbl_16388 // Exon Skipping and Retention # skipped_exon 8463013-8463581 (orient:+) max_ev_support = 1 # retained_exon 8463269-8463373 (orient:+) max_ev_support = 1 scaffold_16 + retained_exons 8463269-8463373 asmbl_16393 scaffold_16 + intron_skips_exon 8463013-8463581 asmbl_16392 // Retained and Spliced Intron # retained_intron 8549399-8549668 (orient:+) max_ev_support = 2 # spliced_intron 8549399-8549668 (orient:+) max_ev_support = 2 scaffold_16 + intron 8549399-8549668 asmbl_16400 scaffold_16 + retained_intron 8549399-8549668 asmbl_16401 // Retained and Spliced Intron # retained_intron 8581350-8581577 (orient:+) max_ev_support = 1 # spliced_intron 8581350-8581577 (orient:+) max_ev_support = 2 scaffold_16 + intron 8581350-8581577 asmbl_16407,asmbl_16408,asmbl_16411 scaffold_16 + retained_intron 8581350-8581577 asmbl_16409 // Exon Skipping and Retention # skipped_exon 8584387-8585369 (orient:+) max_ev_support = 1 # retained_exon 8584929-8585014 (orient:+) max_ev_support = 2 scaffold_16 + retained_exons 8584929-8585014 asmbl_16414,asmbl_16415,asmbl_16416,asmbl_16418,asmbl_16419,asmbl_16420,asmbl_16422 scaffold_16 + intron_skips_exon 8584387-8585369 asmbl_16417,asmbl_16421,asmbl_16423,asmbl_16424 // Exon Skipping and Retention # skipped_exon 8639809-8640658 (orient:+) max_ev_support = 3 # retained_exon 8640050-8640106 (orient:+) max_ev_support = 2 scaffold_16 + retained_exons 8640050-8640106 asmbl_16430,asmbl_16433 scaffold_16 + intron_skips_exon 8639809-8640658 asmbl_16429 // Retained and Spliced Intron # retained_intron 8646214-8646704 (orient:+) max_ev_support = 2 # spliced_intron 8646214-8646704 (orient:+) max_ev_support = 2 scaffold_16 + intron 8646214-8646704 asmbl_16435,asmbl_16438,asmbl_16442 scaffold_16 + retained_intron 8646214-8646704 asmbl_16436,asmbl_16439 // Exon Skipping and Retention # skipped_exon 8892270-8894669 (orient:+) max_ev_support = 1 # retained_exon 8893071-8893116 (orient:+) max_ev_support = 3 scaffold_16 + retained_exons 8893071-8893116 asmbl_16448 scaffold_16 + intron_skips_exon 8892270-8894669 asmbl_16449 // Retained and Spliced Intron # retained_intron 9033041-9033770 (orient:+) max_ev_support = 2 # spliced_intron 9033041-9033770 (orient:+) max_ev_support = 2 scaffold_16 + intron 9033041-9033770 asmbl_16456 scaffold_16 + retained_intron 9033041-9033770 asmbl_16454,asmbl_16457,asmbl_16458 // Exon Skipping and Retention # skipped_exon 9032625-9033770 (orient:+) max_ev_support = 2 # retained_exon 9032991-9033040 (orient:+) max_ev_support = 2 scaffold_16 + retained_exons 9032991-9033040 asmbl_16456 scaffold_16 + intron_skips_exon 9032625-9033770 asmbl_16455 // Retained and Spliced Intron # retained_intron 9145719-9145955 (orient:+) max_ev_support = 1 # spliced_intron 9145719-9145955 (orient:+) max_ev_support = 2 scaffold_16 + intron 9145719-9145955 asmbl_16459,asmbl_16461,asmbl_16463 scaffold_16 + retained_intron 9145719-9145955 asmbl_16460,asmbl_16464 // Exon Skipping and Retention # skipped_exon 10105062-10105306 (orient:+) max_ev_support = 1 # retained_exon 10105152-10105224 (orient:+) max_ev_support = 2 scaffold_16 + retained_exons 10105152-10105224 asmbl_16517 scaffold_16 + intron_skips_exon 10105062-10105306 asmbl_16518,asmbl_16520 // Retained and Spliced Intron # retained_intron 10441689-10441843 (orient:+) max_ev_support = 2 # spliced_intron 10441689-10441843 (orient:+) max_ev_support = 4 scaffold_16 + intron 10441689-10441843 asmbl_16530 scaffold_16 + retained_intron 10441689-10441843 asmbl_16531 // Retained and Spliced Intron # retained_intron 10441689-10441848 (orient:+) max_ev_support = 2 # spliced_intron 10441689-10441848 (orient:+) max_ev_support = 1 scaffold_16 + intron 10441689-10441848 asmbl_16532 scaffold_16 + retained_intron 10441689-10441848 asmbl_16531 // Retained and Spliced Intron # retained_intron 10447527-10448352 (orient:+) max_ev_support = 3 # spliced_intron 10447527-10448352 (orient:+) max_ev_support = 2 scaffold_16 + intron 10447527-10448352 asmbl_16536 scaffold_16 + retained_intron 10447527-10448352 asmbl_16534,asmbl_16535 // Retained and Spliced Intron # retained_intron 10448144-10448354 (orient:+) max_ev_support = 3 # spliced_intron 10448144-10448354 (orient:+) max_ev_support = 1 scaffold_16 + intron 10448144-10448354 asmbl_16538 scaffold_16 + retained_intron 10448144-10448354 asmbl_16534,asmbl_16535 // Retained and Spliced Intron # retained_intron 10448430-10449544 (orient:+) max_ev_support = 4 # spliced_intron 10448430-10449544 (orient:+) max_ev_support = 2 scaffold_16 + intron 10448430-10449544 asmbl_16536,asmbl_16538 scaffold_16 + retained_intron 10448430-10449544 asmbl_16535 // Retained and Spliced Intron # retained_intron 10448911-10449544 (orient:+) max_ev_support = 2 # spliced_intron 10448911-10449544 (orient:+) max_ev_support = 3 scaffold_16 + intron 10448911-10449544 asmbl_16534,asmbl_16539 scaffold_16 + retained_intron 10448911-10449544 asmbl_16535,asmbl_16537 // Retained and Spliced Intron # retained_intron 10449577-10449822 (orient:+) max_ev_support = 2 # spliced_intron 10449577-10449822 (orient:+) max_ev_support = 3 scaffold_16 + intron 10449577-10449822 asmbl_16534,asmbl_16535,asmbl_16536,asmbl_16538 scaffold_16 + retained_intron 10449577-10449822 asmbl_16537,asmbl_16539 // Retained and Spliced Intron # retained_intron 10449967-10450337 (orient:+) max_ev_support = 2 # spliced_intron 10449967-10450337 (orient:+) max_ev_support = 3 scaffold_16 + intron 10449967-10450337 asmbl_16534,asmbl_16535,asmbl_16536,asmbl_16538,asmbl_16539 scaffold_16 + retained_intron 10449967-10450337 asmbl_16537 // Exon Skipping and Retention # skipped_exon 10835446-10836280 (orient:+) max_ev_support = 1 # retained_exon 10835886-10836029 (orient:+) max_ev_support = 2 scaffold_16 + retained_exons 10835886-10836029 asmbl_16557 scaffold_16 + intron_skips_exon 10835446-10836280 asmbl_16558 // Retained and Spliced Intron # retained_intron 11303194-11303588 (orient:+) max_ev_support = 4 # spliced_intron 11303194-11303588 (orient:+) max_ev_support = 3 scaffold_16 + intron 11303194-11303588 asmbl_16574 scaffold_16 + retained_intron 11303194-11303588 asmbl_16573 // Retained and Spliced Intron # retained_intron 11607412-11607538 (orient:+) max_ev_support = 2 # spliced_intron 11607412-11607538 (orient:+) max_ev_support = 1 scaffold_16 + intron 11607412-11607538 asmbl_16589 scaffold_16 + retained_intron 11607412-11607538 asmbl_16588 // Retained and Spliced Intron # retained_intron 11664164-11664277 (orient:+) max_ev_support = 1 # spliced_intron 11664164-11664277 (orient:+) max_ev_support = 2 scaffold_16 + intron 11664164-11664277 asmbl_16593,asmbl_16594 scaffold_16 + retained_intron 11664164-11664277 asmbl_16595 // Retained and Spliced Intron # retained_intron 11941207-11941371 (orient:+) max_ev_support = 1 # spliced_intron 11941207-11941371 (orient:+) max_ev_support = 1 scaffold_16 + intron 11941207-11941371 asmbl_16615 scaffold_16 + retained_intron 11941207-11941371 asmbl_16614 // Retained and Spliced Intron # retained_intron 12019045-12019148 (orient:+) max_ev_support = 2 # spliced_intron 12019045-12019148 (orient:+) max_ev_support = 2 scaffold_16 + intron 12019045-12019148 asmbl_16625,asmbl_16626 scaffold_16 + retained_intron 12019045-12019148 asmbl_16628 // Exon Skipping and Retention # skipped_exon 13216831-13218820 (orient:+) max_ev_support = 2 # retained_exon 13218005-13218082 (orient:+) max_ev_support = 2 scaffold_16 + retained_exons 13218005-13218082 asmbl_16651,asmbl_16657 scaffold_16 + intron_skips_exon 13216831-13218820 asmbl_16652,asmbl_16656 // Retained and Spliced Intron # retained_intron 13922163-13922274 (orient:+) max_ev_support = 2 # spliced_intron 13922163-13922274 (orient:+) max_ev_support = 2 scaffold_16 + intron 13922163-13922274 asmbl_16664 scaffold_16 + retained_intron 13922163-13922274 asmbl_16665 // Retained and Spliced Intron # retained_intron 14437676-14437729 (orient:+) max_ev_support = 3 # spliced_intron 14437676-14437729 (orient:+) max_ev_support = 1 scaffold_16 + intron 14437676-14437729 asmbl_16676 scaffold_16 + retained_intron 14437676-14437729 asmbl_16675 // Exon Skipping and Retention # skipped_exon 14485512-14487936 (orient:+) max_ev_support = 1 # retained_exon 14486585-14486677 (orient:+) max_ev_support = 1 scaffold_16 + retained_exons 14486585-14486677 asmbl_16681 scaffold_16 + intron_skips_exon 14485512-14487936 asmbl_16682 // Retained and Spliced Intron # retained_intron 14552847-14553116 (orient:+) max_ev_support = 2 # spliced_intron 14552847-14553116 (orient:+) max_ev_support = 3 scaffold_16 + intron 14552847-14553116 asmbl_16685,asmbl_16686,asmbl_16690 scaffold_16 + retained_intron 14552847-14553116 asmbl_16687,asmbl_16688,asmbl_16691 // Retained and Spliced Intron # retained_intron 14552936-14553116 (orient:+) max_ev_support = 2 # spliced_intron 14552936-14553116 (orient:+) max_ev_support = 2 scaffold_16 + intron 14552936-14553116 asmbl_16689 scaffold_16 + retained_intron 14552936-14553116 asmbl_16687,asmbl_16688,asmbl_16691 // Retained and Spliced Intron # retained_intron 14553177-14553355 (orient:+) max_ev_support = 2 # spliced_intron 14553177-14553355 (orient:+) max_ev_support = 3 scaffold_16 + intron 14553177-14553355 asmbl_16685,asmbl_16686,asmbl_16688,asmbl_16689,asmbl_16690 scaffold_16 + retained_intron 14553177-14553355 asmbl_16687,asmbl_16691 // Retained and Spliced Intron # retained_intron 14553404-14553521 (orient:+) max_ev_support = 2 # spliced_intron 14553404-14553521 (orient:+) max_ev_support = 3 scaffold_16 + intron 14553404-14553521 asmbl_16685,asmbl_16686,asmbl_16689,asmbl_16690,asmbl_16691 scaffold_16 + retained_intron 14553404-14553521 asmbl_16687 // Retained and Spliced Intron # retained_intron 14663726-14663814 (orient:+) max_ev_support = 3 # spliced_intron 14663726-14663814 (orient:+) max_ev_support = 3 scaffold_16 + intron 14663726-14663814 asmbl_16702 scaffold_16 + retained_intron 14663726-14663814 asmbl_16703 // Exon Skipping and Retention # skipped_exon 15218961-15220712 (orient:+) max_ev_support = 1 # retained_exon 15219675-15219803 (orient:+) max_ev_support = 2 scaffold_16 + retained_exons 15219675-15219803 asmbl_16719 scaffold_16 + intron_skips_exon 15218961-15220712 asmbl_16721 // Retained and Spliced Intron # retained_intron 15229002-15229042 (orient:+) max_ev_support = 1 # spliced_intron 15229002-15229042 (orient:+) max_ev_support = 1 scaffold_16 + intron 15229002-15229042 asmbl_16723 scaffold_16 + retained_intron 15229002-15229042 asmbl_16721,asmbl_16722 // Retained and Spliced Intron # retained_intron 151929-152211 (orient:-) max_ev_support = 2 # spliced_intron 151929-152211 (orient:-) max_ev_support = 2 scaffold_16 - intron 151929-152211 asmbl_16833,asmbl_16834,asmbl_16841 scaffold_16 - retained_intron 151929-152211 asmbl_16840 // Retained and Spliced Intron # retained_intron 154458-154650 (orient:-) max_ev_support = 1 # spliced_intron 154458-154650 (orient:-) max_ev_support = 2 scaffold_16 - intron 154458-154650 asmbl_16834 scaffold_16 - retained_intron 154458-154650 asmbl_16841 // Retained and Spliced Intron # retained_intron 293907-294060 (orient:-) max_ev_support = 3 # spliced_intron 293907-294060 (orient:-) max_ev_support = 2 scaffold_16 - intron 293907-294060 asmbl_16847 scaffold_16 - retained_intron 293907-294060 asmbl_16845 // Exon Skipping and Retention # skipped_exon 325505-325750 (orient:-) max_ev_support = 1 # retained_exon 325601-325669 (orient:-) max_ev_support = 2 scaffold_16 - retained_exons 325601-325669 asmbl_16855,asmbl_16856,asmbl_16858,asmbl_16859 scaffold_16 - intron_skips_exon 325505-325750 asmbl_16857,asmbl_16860,asmbl_16861 // Retained and Spliced Intron # retained_intron 327833-327983 (orient:-) max_ev_support = 1 # spliced_intron 327833-327983 (orient:-) max_ev_support = 2 scaffold_16 - intron 327833-327983 asmbl_16855,asmbl_16858,asmbl_16860 scaffold_16 - retained_intron 327833-327983 asmbl_16856,asmbl_16857,asmbl_16859,asmbl_16861 // Retained and Spliced Intron # retained_intron 325937-326065 (orient:-) max_ev_support = 1 # spliced_intron 325937-326065 (orient:-) max_ev_support = 2 scaffold_16 - intron 325937-326065 asmbl_16855,asmbl_16856,asmbl_16858,asmbl_16859,asmbl_16861 scaffold_16 - retained_intron 325937-326065 asmbl_16857,asmbl_16860 // Retained and Spliced Intron # retained_intron 325094-325177 (orient:-) max_ev_support = 1 # spliced_intron 325094-325177 (orient:-) max_ev_support = 2 scaffold_16 - intron 325094-325177 asmbl_16855,asmbl_16856,asmbl_16857,asmbl_16860,asmbl_16861 scaffold_16 - retained_intron 325094-325177 asmbl_16858,asmbl_16859 // Retained and Spliced Intron # retained_intron 411662-411800 (orient:-) max_ev_support = 1 # spliced_intron 411662-411800 (orient:-) max_ev_support = 2 scaffold_16 - intron 411662-411800 asmbl_16864,asmbl_16866 scaffold_16 - retained_intron 411662-411800 asmbl_16865 // Retained and Spliced Intron # retained_intron 429984-430051 (orient:-) max_ev_support = 1 # spliced_intron 429984-430051 (orient:-) max_ev_support = 1 scaffold_16 - intron 429984-430051 asmbl_16870,asmbl_16871,asmbl_16872,asmbl_16873,asmbl_16874,asmbl_16876,asmbl_16877,asmbl_16878,asmbl_16879,asmbl_16880 scaffold_16 - retained_intron 429984-430051 asmbl_16869,asmbl_16875 // Exon Skipping and Retention # skipped_exon 432537-433108 (orient:-) max_ev_support = 1 # retained_exon 432654-432695 (orient:-) max_ev_support = 1 scaffold_16 - retained_exons 432654-432695 asmbl_16869,asmbl_16870,asmbl_16871,asmbl_16873,asmbl_16874,asmbl_16875,asmbl_16876,asmbl_16877,asmbl_16879,asmbl_16880 scaffold_16 - intron_skips_exon 432537-433108 asmbl_16872 // Retained and Spliced Intron # retained_intron 433622-433712 (orient:-) max_ev_support = 1 # spliced_intron 433622-433712 (orient:-) max_ev_support = 1 scaffold_16 - intron 433622-433712 asmbl_16870,asmbl_16875,asmbl_16877,asmbl_16879 scaffold_16 - retained_intron 433622-433712 asmbl_16869,asmbl_16873,asmbl_16874 // Retained and Spliced Intron # retained_intron 433622-434014 (orient:-) max_ev_support = 1 # spliced_intron 433622-434014 (orient:-) max_ev_support = 1 scaffold_16 - intron 433622-434014 asmbl_16871,asmbl_16876,asmbl_16880 scaffold_16 - retained_intron 433622-434014 asmbl_16869,asmbl_16873 // Retained and Spliced Intron # retained_intron 433763-434014 (orient:-) max_ev_support = 1 # spliced_intron 433763-434014 (orient:-) max_ev_support = 1 scaffold_16 - intron 433763-434014 asmbl_16874,asmbl_16875,asmbl_16879 scaffold_16 - retained_intron 433763-434014 asmbl_16869,asmbl_16870,asmbl_16873,asmbl_16877 // Retained and Spliced Intron # retained_intron 434057-434518 (orient:-) max_ev_support = 2 # spliced_intron 434057-434518 (orient:-) max_ev_support = 1 scaffold_16 - intron 434057-434518 asmbl_16873,asmbl_16875,asmbl_16876,asmbl_16879,asmbl_16880 scaffold_16 - retained_intron 434057-434518 asmbl_16869,asmbl_16870,asmbl_16877 // Retained and Spliced Intron # retained_intron 433381-433451 (orient:-) max_ev_support = 1 # spliced_intron 433381-433451 (orient:-) max_ev_support = 1 scaffold_16 - intron 433381-433451 asmbl_16869,asmbl_16870,asmbl_16872,asmbl_16873,asmbl_16875,asmbl_16876,asmbl_16877,asmbl_16879,asmbl_16880 scaffold_16 - retained_intron 433381-433451 asmbl_16871,asmbl_16874 // Retained and Spliced Intron # retained_intron 430142-430213 (orient:-) max_ev_support = 1 # spliced_intron 430142-430213 (orient:-) max_ev_support = 1 scaffold_16 - intron 430142-430213 asmbl_16869,asmbl_16870,asmbl_16871,asmbl_16872,asmbl_16873,asmbl_16874,asmbl_16877,asmbl_16879,asmbl_16880 scaffold_16 - retained_intron 430142-430213 asmbl_16875,asmbl_16876,asmbl_16878 // Exon Skipping and Retention # skipped_exon 433622-434014 (orient:-) max_ev_support = 1 # retained_exon 433713-433762 (orient:-) max_ev_support = 1 scaffold_16 - retained_exons 433713-433762 asmbl_16875,asmbl_16879 scaffold_16 - intron_skips_exon 433622-434014 asmbl_16871,asmbl_16876,asmbl_16880 // Retained and Spliced Intron # retained_intron 743885-744041 (orient:-) max_ev_support = 2 # spliced_intron 743885-744041 (orient:-) max_ev_support = 2 scaffold_16 - intron 743885-744041 asmbl_16896,asmbl_16898,asmbl_16899,asmbl_16900,asmbl_16901,asmbl_16902 scaffold_16 - retained_intron 743885-744041 asmbl_16895 // Exon Skipping and Retention # skipped_exon 744159-744656 (orient:-) max_ev_support = 1 # retained_exon 744376-744435 (orient:-) max_ev_support = 2 scaffold_16 - retained_exons 744376-744435 asmbl_16896,asmbl_16898 scaffold_16 - intron_skips_exon 744159-744656 asmbl_16902 // Retained and Spliced Intron # retained_intron 744436-744656 (orient:-) max_ev_support = 1 # spliced_intron 744436-744656 (orient:-) max_ev_support = 2 scaffold_16 - intron 744436-744656 asmbl_16896,asmbl_16898 scaffold_16 - retained_intron 744436-744656 asmbl_16900,asmbl_16901 // Retained and Spliced Intron # retained_intron 809175-809692 (orient:-) max_ev_support = 2 # spliced_intron 809175-809692 (orient:-) max_ev_support = 2 scaffold_16 - intron 809175-809692 asmbl_16908,asmbl_16910,asmbl_16911 scaffold_16 - retained_intron 809175-809692 asmbl_16907,asmbl_16909,asmbl_16912 // Retained and Spliced Intron # retained_intron 809774-810034 (orient:-) max_ev_support = 1 # spliced_intron 809774-810034 (orient:-) max_ev_support = 2 scaffold_16 - intron 809774-810034 asmbl_16907,asmbl_16908,asmbl_16910,asmbl_16911,asmbl_16912 scaffold_16 - retained_intron 809774-810034 asmbl_16909 // Retained and Spliced Intron # retained_intron 810150-810259 (orient:-) max_ev_support = 1 # spliced_intron 810150-810259 (orient:-) max_ev_support = 2 scaffold_16 - intron 810150-810259 asmbl_16907 scaffold_16 - retained_intron 810150-810259 asmbl_16909,asmbl_16910,asmbl_16911 // Retained and Spliced Intron # retained_intron 810169-810259 (orient:-) max_ev_support = 1 # spliced_intron 810169-810259 (orient:-) max_ev_support = 2 scaffold_16 - intron 810169-810259 asmbl_16908,asmbl_16912 scaffold_16 - retained_intron 810169-810259 asmbl_16909,asmbl_16910,asmbl_16911 // Retained and Spliced Intron # retained_intron 810291-810378 (orient:-) max_ev_support = 1 # spliced_intron 810291-810378 (orient:-) max_ev_support = 2 scaffold_16 - intron 810291-810378 asmbl_16907,asmbl_16908,asmbl_16911,asmbl_16912 scaffold_16 - retained_intron 810291-810378 asmbl_16909,asmbl_16910 // Retained and Spliced Intron # retained_intron 1237437-1237543 (orient:-) max_ev_support = 1 # spliced_intron 1237437-1237543 (orient:-) max_ev_support = 2 scaffold_16 - intron 1237437-1237543 asmbl_16928,asmbl_16930,asmbl_16931 scaffold_16 - retained_intron 1237437-1237543 asmbl_16929 // Retained and Spliced Intron # retained_intron 1237655-1237855 (orient:-) max_ev_support = 1 # spliced_intron 1237655-1237855 (orient:-) max_ev_support = 2 scaffold_16 - intron 1237655-1237855 asmbl_16928,asmbl_16930 scaffold_16 - retained_intron 1237655-1237855 asmbl_16929,asmbl_16931 // Retained and Spliced Intron # retained_intron 1236351-1236851 (orient:-) max_ev_support = 1 # spliced_intron 1236351-1236851 (orient:-) max_ev_support = 2 scaffold_16 - intron 1236351-1236851 asmbl_16928,asmbl_16929 scaffold_16 - retained_intron 1236351-1236851 asmbl_16930 // Exon Skipping and Retention # skipped_exon 1252597-1254752 (orient:-) max_ev_support = 2 # retained_exon 1253217-1253352 (orient:-) max_ev_support = 2 scaffold_16 - retained_exons 1253217-1253352 asmbl_16939 scaffold_16 - intron_skips_exon 1252597-1254752 asmbl_16940 // Exon Skipping and Retention # skipped_exon 2336883-2337733 (orient:-) max_ev_support = 1 # retained_exon 2337297-2337340 (orient:-) max_ev_support = 3 scaffold_16 - retained_exons 2337297-2337340 asmbl_16962 scaffold_16 - intron_skips_exon 2336883-2337733 asmbl_16963 // Retained and Spliced Intron # retained_intron 2386305-2386343 (orient:-) max_ev_support = 2 # spliced_intron 2386305-2386343 (orient:-) max_ev_support = 1 scaffold_16 - intron 2386305-2386343 asmbl_16966 scaffold_16 - retained_intron 2386305-2386343 asmbl_16964 // Retained and Spliced Intron # retained_intron 2386305-2386382 (orient:-) max_ev_support = 2 # spliced_intron 2386305-2386382 (orient:-) max_ev_support = 1 scaffold_16 - intron 2386305-2386382 asmbl_16965 scaffold_16 - retained_intron 2386305-2386382 asmbl_16964 // Retained and Spliced Intron # retained_intron 3563930-3564366 (orient:-) max_ev_support = 2 # spliced_intron 3563930-3564366 (orient:-) max_ev_support = 2 scaffold_16 - intron 3563930-3564366 asmbl_16983 scaffold_16 - retained_intron 3563930-3564366 asmbl_16984,asmbl_16985 // Retained and Spliced Intron # retained_intron 3564452-3564605 (orient:-) max_ev_support = 2 # spliced_intron 3564452-3564605 (orient:-) max_ev_support = 2 scaffold_16 - intron 3564452-3564605 asmbl_16983 scaffold_16 - retained_intron 3564452-3564605 asmbl_16984,asmbl_16985 // Exon Skipping and Retention # skipped_exon 3710573-3711063 (orient:-) max_ev_support = 2 # retained_exon 3710861-3710953 (orient:-) max_ev_support = 1 scaffold_16 - retained_exons 3710861-3710953 asmbl_16996 scaffold_16 - intron_skips_exon 3710573-3711063 asmbl_16995 // Retained and Spliced Intron # retained_intron 3821260-3821374 (orient:-) max_ev_support = 3 # spliced_intron 3821260-3821374 (orient:-) max_ev_support = 2 scaffold_16 - intron 3821260-3821374 asmbl_17004 scaffold_16 - retained_intron 3821260-3821374 asmbl_17003 // Retained and Spliced Intron # retained_intron 4017628-4017730 (orient:-) max_ev_support = 1 # spliced_intron 4017628-4017730 (orient:-) max_ev_support = 2 scaffold_16 - intron 4017628-4017730 asmbl_17033 scaffold_16 - retained_intron 4017628-4017730 asmbl_17034 // Retained and Spliced Intron # retained_intron 4062380-4062655 (orient:-) max_ev_support = 2 # spliced_intron 4062380-4062655 (orient:-) max_ev_support = 2 scaffold_16 - intron 4062380-4062655 asmbl_17045,asmbl_17046,asmbl_17048 scaffold_16 - retained_intron 4062380-4062655 asmbl_17047 // Retained and Spliced Intron # retained_intron 4597484-4597636 (orient:-) max_ev_support = 1 # spliced_intron 4597484-4597636 (orient:-) max_ev_support = 2 scaffold_16 - intron 4597484-4597636 asmbl_17063 scaffold_16 - retained_intron 4597484-4597636 asmbl_17064 // Exon Skipping and Retention # skipped_exon 5390548-5391466 (orient:-) max_ev_support = 1 # retained_exon 5391350-5391376 (orient:-) max_ev_support = 2 scaffold_16 - retained_exons 5391350-5391376 asmbl_17092,asmbl_17095 scaffold_16 - intron_skips_exon 5390548-5391466 asmbl_17093,asmbl_17094 // Retained and Spliced Intron # retained_intron 5445512-5445763 (orient:-) max_ev_support = 2 # spliced_intron 5445512-5445763 (orient:-) max_ev_support = 3 scaffold_16 - intron 5445512-5445763 asmbl_17103,asmbl_17105 scaffold_16 - retained_intron 5445512-5445763 asmbl_17104 // Retained and Spliced Intron # retained_intron 5488508-5488595 (orient:-) max_ev_support = 3 # spliced_intron 5488508-5488595 (orient:-) max_ev_support = 3 scaffold_16 - intron 5488508-5488595 asmbl_17110 scaffold_16 - retained_intron 5488508-5488595 asmbl_17109 // Retained and Spliced Intron # retained_intron 5487668-5488014 (orient:-) max_ev_support = 2 # spliced_intron 5487668-5488014 (orient:-) max_ev_support = 3 scaffold_16 - intron 5487668-5488014 asmbl_17109,asmbl_17110 scaffold_16 - retained_intron 5487668-5488014 asmbl_17111 // Retained and Spliced Intron # retained_intron 6137953-6138100 (orient:-) max_ev_support = 2 # spliced_intron 6137953-6138100 (orient:-) max_ev_support = 2 scaffold_16 - intron 6137953-6138100 asmbl_17143 scaffold_16 - retained_intron 6137953-6138100 asmbl_17144 // Retained and Spliced Intron # retained_intron 6138194-6138347 (orient:-) max_ev_support = 2 # spliced_intron 6138194-6138347 (orient:-) max_ev_support = 2 scaffold_16 - intron 6138194-6138347 asmbl_17143 scaffold_16 - retained_intron 6138194-6138347 asmbl_17144 // Retained and Spliced Intron # retained_intron 6206176-6206400 (orient:-) max_ev_support = 2 # spliced_intron 6206176-6206400 (orient:-) max_ev_support = 2 scaffold_16 - intron 6206176-6206400 asmbl_17150 scaffold_16 - retained_intron 6206176-6206400 asmbl_17151 // Retained and Spliced Intron # retained_intron 6216174-6216261 (orient:-) max_ev_support = 1 # spliced_intron 6216174-6216261 (orient:-) max_ev_support = 2 scaffold_16 - intron 6216174-6216261 asmbl_17152 scaffold_16 - retained_intron 6216174-6216261 asmbl_17153 // Retained and Spliced Intron # retained_intron 6232211-6232250 (orient:-) max_ev_support = 1 # spliced_intron 6232211-6232250 (orient:-) max_ev_support = 1 scaffold_16 - intron 6232211-6232250 asmbl_17155 scaffold_16 - retained_intron 6232211-6232250 asmbl_17156 // Retained and Spliced Intron # retained_intron 7216868-7217206 (orient:-) max_ev_support = 2 # spliced_intron 7216868-7217206 (orient:-) max_ev_support = 1 scaffold_16 - intron 7216868-7217206 asmbl_17177 scaffold_16 - retained_intron 7216868-7217206 asmbl_17169,asmbl_17173,asmbl_17176 // Exon Skipping and Retention # skipped_exon 7227132-7228890 (orient:-) max_ev_support = 1 # retained_exon 7227816-7228463 (orient:-) max_ev_support = 1 scaffold_16 - retained_exons 7227816-7227878,7228383-7228463 asmbl_17173,asmbl_17176 scaffold_16 - intron_skips_exon 7227132-7228890 asmbl_17177 // Exon Skipping and Retention # skipped_exon 7228464-7230994 (orient:-) max_ev_support = 1 # retained_exon 7228891-7228941 (orient:-) max_ev_support = 1 scaffold_16 - retained_exons 7228891-7228941 asmbl_17173,asmbl_17177 scaffold_16 - intron_skips_exon 7228464-7230994 asmbl_17176 // Exon Skipping and Retention # skipped_exon 7235994-7236929 (orient:-) max_ev_support = 2 # retained_exon 7236607-7236702 (orient:-) max_ev_support = 1 scaffold_16 - retained_exons 7236607-7236702 asmbl_17173,asmbl_17175,asmbl_17176 scaffold_16 - intron_skips_exon 7235994-7236929 asmbl_17170,asmbl_17177 // Exon Skipping and Retention # skipped_exon 7238165-7239491 (orient:-) max_ev_support = 2 # retained_exon 7238756-7238917 (orient:-) max_ev_support = 1 scaffold_16 - retained_exons 7238756-7238917 asmbl_17173,asmbl_17175,asmbl_17176,asmbl_17177 scaffold_16 - intron_skips_exon 7238165-7239491 asmbl_17170 // Exon Skipping and Retention # skipped_exon 7234374-7235710 (orient:-) max_ev_support = 2 # retained_exon 7235244-7235324 (orient:-) max_ev_support = 1 scaffold_16 - retained_exons 7235244-7235324 asmbl_17175,asmbl_17176,asmbl_17177 scaffold_16 - intron_skips_exon 7234374-7235710 asmbl_17170,asmbl_17173 // Exon Skipping and Retention # skipped_exon 7240374-7243239 (orient:-) max_ev_support = 1 # retained_exon 7241550-7241633 (orient:-) max_ev_support = 1 scaffold_16 - retained_exons 7241550-7241633 asmbl_17177 scaffold_16 - intron_skips_exon 7240374-7243239 asmbl_17170,asmbl_17173,asmbl_17175,asmbl_17176 // Retained and Spliced Intron # retained_intron 7540673-7540805 (orient:-) max_ev_support = 1 # spliced_intron 7540673-7540805 (orient:-) max_ev_support = 2 scaffold_16 - intron 7540673-7540805 asmbl_17181 scaffold_16 - retained_intron 7540673-7540805 asmbl_17182 // Retained and Spliced Intron # retained_intron 7702579-7702690 (orient:-) max_ev_support = 2 # spliced_intron 7702579-7702690 (orient:-) max_ev_support = 1 scaffold_16 - intron 7702579-7702690 asmbl_17192 scaffold_16 - retained_intron 7702579-7702690 asmbl_17190 // Retained and Spliced Intron # retained_intron 8070830-8070976 (orient:-) max_ev_support = 2 # spliced_intron 8070830-8070976 (orient:-) max_ev_support = 1 scaffold_16 - intron 8070830-8070976 asmbl_17222 scaffold_16 - retained_intron 8070830-8070976 asmbl_17223 // Retained and Spliced Intron # retained_intron 8086575-8086765 (orient:-) max_ev_support = 2 # spliced_intron 8086575-8086765 (orient:-) max_ev_support = 2 scaffold_16 - intron 8086575-8086765 asmbl_17225 scaffold_16 - retained_intron 8086575-8086765 asmbl_17227 // Retained and Spliced Intron # retained_intron 8088050-8088183 (orient:-) max_ev_support = 2 # spliced_intron 8088050-8088183 (orient:-) max_ev_support = 1 scaffold_16 - intron 8088050-8088183 asmbl_17225,asmbl_17230,asmbl_17231 scaffold_16 - retained_intron 8088050-8088183 asmbl_17228 // Retained and Spliced Intron # retained_intron 8101538-8101645 (orient:-) max_ev_support = 1 # spliced_intron 8101538-8101645 (orient:-) max_ev_support = 2 scaffold_16 - intron 8101538-8101645 asmbl_17232 scaffold_16 - retained_intron 8101538-8101645 asmbl_17234 // Exon Skipping and Retention # skipped_exon 8711335-8712234 (orient:-) max_ev_support = 2 # retained_exon 8711878-8711984 (orient:-) max_ev_support = 2 scaffold_16 - retained_exons 8711878-8711984 asmbl_17254,asmbl_17255 scaffold_16 - intron_skips_exon 8711335-8712234 asmbl_17252,asmbl_17253 // Retained and Spliced Intron # retained_intron 8875480-8875517 (orient:-) max_ev_support = 2 # spliced_intron 8875480-8875517 (orient:-) max_ev_support = 1 scaffold_16 - intron 8875480-8875517 asmbl_17261 scaffold_16 - retained_intron 8875480-8875517 asmbl_17260 // Exon Skipping and Retention # skipped_exon 9625301-9625822 (orient:-) max_ev_support = 2 # retained_exon 9625470-9625484 (orient:-) max_ev_support = 2 scaffold_16 - retained_exons 9625470-9625484 asmbl_17289 scaffold_16 - intron_skips_exon 9625301-9625822 asmbl_17288 // Exon Skipping and Retention # skipped_exon 10156837-10157265 (orient:-) max_ev_support = 1 # retained_exon 10157081-10157182 (orient:-) max_ev_support = 2 scaffold_16 - retained_exons 10157081-10157182 asmbl_17306,asmbl_17308 scaffold_16 - intron_skips_exon 10156837-10157265 asmbl_17307 // Exon Skipping and Retention # skipped_exon 10976248-10977481 (orient:-) max_ev_support = 1 # retained_exon 10977144-10977215 (orient:-) max_ev_support = 2 scaffold_16 - retained_exons 10977144-10977215 asmbl_17320 scaffold_16 - intron_skips_exon 10976248-10977481 asmbl_17322 // Exon Skipping and Retention # skipped_exon 10972053-10973639 (orient:-) max_ev_support = 2 # retained_exon 10972865-10972915 (orient:-) max_ev_support = 1 scaffold_16 - retained_exons 10972865-10972915 asmbl_17323 scaffold_16 - intron_skips_exon 10972053-10973639 asmbl_17320,asmbl_17322,asmbl_17324 // Retained and Spliced Intron # retained_intron 11394881-11395273 (orient:-) max_ev_support = 3 # spliced_intron 11394881-11395273 (orient:-) max_ev_support = 1 scaffold_16 - intron 11394881-11395273 asmbl_17341 scaffold_16 - retained_intron 11394881-11395273 asmbl_17340,asmbl_17342,asmbl_17343 // Retained and Spliced Intron # retained_intron 11596511-11596915 (orient:-) max_ev_support = 3 # spliced_intron 11596511-11596915 (orient:-) max_ev_support = 1 scaffold_16 - intron 11596511-11596915 asmbl_17353 scaffold_16 - retained_intron 11596511-11596915 asmbl_17352 // Exon Skipping and Retention # skipped_exon 12022195-12022852 (orient:-) max_ev_support = 2 # retained_exon 12022267-12022318 (orient:-) max_ev_support = 2 scaffold_16 - retained_exons 12022267-12022318 asmbl_17383 scaffold_16 - intron_skips_exon 12022195-12022852 asmbl_17382 // Exon Skipping and Retention # skipped_exon 12022195-12022875 (orient:-) max_ev_support = 1 # retained_exon 12022267-12022318 (orient:-) max_ev_support = 2 scaffold_16 - retained_exons 12022267-12022318 asmbl_17383 scaffold_16 - intron_skips_exon 12022195-12022875 asmbl_17384 // Retained and Spliced Intron # retained_intron 12642114-12642264 (orient:-) max_ev_support = 2 # spliced_intron 12642114-12642264 (orient:-) max_ev_support = 2 scaffold_16 - intron 12642114-12642264 asmbl_17397 scaffold_16 - retained_intron 12642114-12642264 asmbl_17396 // Exon Skipping and Retention # skipped_exon 13948602-13949816 (orient:-) max_ev_support = 1 # retained_exon 13948691-13948919 (orient:-) max_ev_support = 2 scaffold_16 - retained_exons 13948691-13948747,13948859-13948919 asmbl_17418 scaffold_16 - intron_skips_exon 13948602-13949816 asmbl_17419 // Exon Skipping and Retention # skipped_exon 14190504-14192190 (orient:-) max_ev_support = 2 # retained_exon 14191268-14191387 (orient:-) max_ev_support = 2 scaffold_16 - retained_exons 14191268-14191387 asmbl_17438,asmbl_17439 scaffold_16 - intron_skips_exon 14190504-14192190 asmbl_17440 // Exon Skipping and Retention # skipped_exon 14188298-14190333 (orient:-) max_ev_support = 2 # retained_exon 14189380-14189394 (orient:-) max_ev_support = 2 scaffold_16 - retained_exons 14189380-14189394 asmbl_17439,asmbl_17440 scaffold_16 - intron_skips_exon 14188298-14190333 asmbl_17438 // Retained and Spliced Intron # retained_intron 14510761-14510867 (orient:-) max_ev_support = 2 # spliced_intron 14510761-14510867 (orient:-) max_ev_support = 2 scaffold_16 - intron 14510761-14510867 asmbl_17447,asmbl_17448,asmbl_17449 scaffold_16 - retained_intron 14510761-14510867 asmbl_17446 // Retained and Spliced Intron # retained_intron 14510973-14511105 (orient:-) max_ev_support = 2 # spliced_intron 14510973-14511105 (orient:-) max_ev_support = 2 scaffold_16 - intron 14510973-14511105 asmbl_17447,asmbl_17448,asmbl_17449 scaffold_16 - retained_intron 14510973-14511105 asmbl_17446 // Retained and Spliced Intron # retained_intron 14513223-14513295 (orient:-) max_ev_support = 1 # spliced_intron 14513223-14513295 (orient:-) max_ev_support = 2 scaffold_16 - intron 14513223-14513295 asmbl_17447 scaffold_16 - retained_intron 14513223-14513295 asmbl_17448 // Retained and Spliced Intron # retained_intron 14512399-14512482 (orient:-) max_ev_support = 1 # spliced_intron 14512399-14512482 (orient:-) max_ev_support = 2 scaffold_16 - intron 14512399-14512482 asmbl_17447,asmbl_17448 scaffold_16 - retained_intron 14512399-14512482 asmbl_17449 // Retained and Spliced Intron # retained_intron 14510356-14510447 (orient:-) max_ev_support = 2 # spliced_intron 14510356-14510447 (orient:-) max_ev_support = 3 scaffold_16 - intron 14510356-14510447 asmbl_17446,asmbl_17447,asmbl_17448,asmbl_17449 scaffold_16 - retained_intron 14510356-14510447 asmbl_17450 // Retained and Spliced Intron # retained_intron 14527856-14527939 (orient:-) max_ev_support = 1 # spliced_intron 14527856-14527939 (orient:-) max_ev_support = 2 scaffold_16 - intron 14527856-14527939 asmbl_17455 scaffold_16 - retained_intron 14527856-14527939 asmbl_17456 // Exon Skipping and Retention # skipped_exon 14544410-14546401 (orient:-) max_ev_support = 1 # retained_exon 14546156-14546279 (orient:-) max_ev_support = 1 scaffold_16 - retained_exons 14546156-14546279 asmbl_17461 scaffold_16 - intron_skips_exon 14544410-14546401 asmbl_17462 // Exon Skipping and Retention # skipped_exon 14544204-14546155 (orient:-) max_ev_support = 1 # retained_exon 14544286-14544409 (orient:-) max_ev_support = 1 scaffold_16 - retained_exons 14544286-14544409 asmbl_17462 scaffold_16 - intron_skips_exon 14544204-14546155 asmbl_17461 // Retained and Spliced Intron # retained_intron 14556348-14556439 (orient:-) max_ev_support = 2 # spliced_intron 14556348-14556439 (orient:-) max_ev_support = 1 scaffold_16 - intron 14556348-14556439 asmbl_17465 scaffold_16 - retained_intron 14556348-14556439 asmbl_17464 // Retained and Spliced Intron # retained_intron 14560038-14560115 (orient:-) max_ev_support = 1 # spliced_intron 14560038-14560115 (orient:-) max_ev_support = 2 scaffold_16 - intron 14560038-14560115 asmbl_17466 scaffold_16 - retained_intron 14560038-14560115 asmbl_17467 // Retained and Spliced Intron # retained_intron 14615041-14615251 (orient:-) max_ev_support = 2 # spliced_intron 14615041-14615251 (orient:-) max_ev_support = 1 scaffold_16 - intron 14615041-14615251 asmbl_17476,asmbl_17479 scaffold_16 - retained_intron 14615041-14615251 asmbl_17474 // Retained and Spliced Intron # retained_intron 14662578-14662669 (orient:-) max_ev_support = 1 # spliced_intron 14662578-14662669 (orient:-) max_ev_support = 2 scaffold_16 - intron 14662578-14662669 asmbl_17489,asmbl_17491 scaffold_16 - retained_intron 14662578-14662669 asmbl_17490 // Retained and Spliced Intron # retained_intron 1827-1982 (orient:+) max_ev_support = 1 # spliced_intron 1827-1982 (orient:+) max_ev_support = 2 scaffold_1611 + intron 1827-1982 asmbl_17600 scaffold_1611 + retained_intron 1827-1982 asmbl_17601 // Retained and Spliced Intron # retained_intron 11120-11315 (orient:-) max_ev_support = 9 # spliced_intron 11120-11315 (orient:-) max_ev_support = 2 scaffold_167 - intron 11120-11315 asmbl_17619 scaffold_167 - retained_intron 11120-11315 asmbl_17618 // Retained and Spliced Intron # retained_intron 477860-478200 (orient:-) max_ev_support = 1 # spliced_intron 477860-478200 (orient:-) max_ev_support = 2 scaffold_17 - intron 477860-478200 asmbl_17622 scaffold_17 - retained_intron 477860-478200 asmbl_17623 // Exon Skipping and Retention # skipped_exon 603900-606582 (orient:-) max_ev_support = 1 # retained_exon 604457-604498 (orient:-) max_ev_support = 1 scaffold_17 - retained_exons 604457-604498 asmbl_17630,asmbl_17631,asmbl_17632 scaffold_17 - intron_skips_exon 603900-606582 asmbl_17633 // Exon Skipping and Retention # skipped_exon 607337-608734 (orient:-) max_ev_support = 1 # retained_exon 607924-607947 (orient:-) max_ev_support = 1 scaffold_17 - retained_exons 607924-607947 asmbl_17630,asmbl_17631,asmbl_17633 scaffold_17 - intron_skips_exon 607337-608734 asmbl_17632 // Retained and Spliced Intron # retained_intron 680623-680807 (orient:-) max_ev_support = 2 # spliced_intron 680623-680807 (orient:-) max_ev_support = 2 scaffold_17 - intron 680623-680807 asmbl_17642,asmbl_17644,asmbl_17645,asmbl_17646 scaffold_17 - retained_intron 680623-680807 asmbl_17643 // Retained and Spliced Intron # retained_intron 1054915-1055189 (orient:-) max_ev_support = 2 # spliced_intron 1054915-1055189 (orient:-) max_ev_support = 1 scaffold_17 - intron 1054915-1055189 asmbl_17671 scaffold_17 - retained_intron 1054915-1055189 asmbl_17668 // Retained and Spliced Intron # retained_intron 1289822-1289896 (orient:-) max_ev_support = 2 # spliced_intron 1289822-1289896 (orient:-) max_ev_support = 2 scaffold_17 - intron 1289822-1289896 asmbl_17679,asmbl_17680,asmbl_17682,asmbl_17683 scaffold_17 - retained_intron 1289822-1289896 asmbl_17681,asmbl_17684 // Retained and Spliced Intron # retained_intron 1291368-1292422 (orient:-) max_ev_support = 1 # spliced_intron 1291368-1292422 (orient:-) max_ev_support = 1 scaffold_17 - intron 1291368-1292422 asmbl_17683 scaffold_17 - retained_intron 1291368-1292422 asmbl_17682,asmbl_17687 // Retained and Spliced Intron # retained_intron 1292002-1292412 (orient:-) max_ev_support = 1 # spliced_intron 1292002-1292412 (orient:-) max_ev_support = 2 scaffold_17 - intron 1292002-1292412 asmbl_17679 scaffold_17 - retained_intron 1292002-1292412 asmbl_17682,asmbl_17687 // Retained and Spliced Intron # retained_intron 1292002-1292436 (orient:-) max_ev_support = 1 # spliced_intron 1292002-1292436 (orient:-) max_ev_support = 2 scaffold_17 - intron 1292002-1292436 asmbl_17680 scaffold_17 - retained_intron 1292002-1292436 asmbl_17682,asmbl_17687 // Exon Skipping and Retention # skipped_exon 1289407-1290515 (orient:-) max_ev_support = 1 # retained_exon 1289779-1289821 (orient:-) max_ev_support = 1 scaffold_17 - retained_exons 1289779-1289821 asmbl_17685 scaffold_17 - intron_skips_exon 1289407-1290515 asmbl_17686 // Exon Skipping and Retention # skipped_exon 1302758-1303353 (orient:-) max_ev_support = 2 # retained_exon 1302874-1302916 (orient:-) max_ev_support = 2 scaffold_17 - retained_exons 1302874-1302916 asmbl_17694 scaffold_17 - intron_skips_exon 1302758-1303353 asmbl_17693 // Retained and Spliced Intron # retained_intron 1304202-1304506 (orient:-) max_ev_support = 1 # spliced_intron 1304202-1304506 (orient:-) max_ev_support = 2 scaffold_17 - intron 1304202-1304506 asmbl_17693,asmbl_17694,asmbl_17697,asmbl_17699,asmbl_17700 scaffold_17 - retained_intron 1304202-1304506 asmbl_17698 // Retained and Spliced Intron # retained_intron 1304001-1304135 (orient:-) max_ev_support = 1 # spliced_intron 1304001-1304135 (orient:-) max_ev_support = 2 scaffold_17 - intron 1304001-1304135 asmbl_17693,asmbl_17694,asmbl_17697,asmbl_17698 scaffold_17 - retained_intron 1304001-1304135 asmbl_17699,asmbl_17700 // Retained and Spliced Intron # retained_intron 1303722-1303950 (orient:-) max_ev_support = 1 # spliced_intron 1303722-1303950 (orient:-) max_ev_support = 2 scaffold_17 - intron 1303722-1303950 asmbl_17693,asmbl_17694,asmbl_17697,asmbl_17698,asmbl_17699 scaffold_17 - retained_intron 1303722-1303950 asmbl_17700 // Retained and Spliced Intron # retained_intron 1360485-1360559 (orient:-) max_ev_support = 1 # spliced_intron 1360485-1360559 (orient:-) max_ev_support = 1 scaffold_17 - intron 1360485-1360559 asmbl_17704,asmbl_17705 scaffold_17 - retained_intron 1360485-1360559 asmbl_17703 // Retained and Spliced Intron # retained_intron 1512991-1513501 (orient:-) max_ev_support = 2 # spliced_intron 1512991-1513501 (orient:-) max_ev_support = 2 scaffold_17 - intron 1512991-1513501 asmbl_17719 scaffold_17 - retained_intron 1512991-1513501 asmbl_17720 // Retained and Spliced Intron # retained_intron 2535887-2536718 (orient:-) max_ev_support = 2 # spliced_intron 2535887-2536718 (orient:-) max_ev_support = 2 scaffold_17 - intron 2535887-2536718 asmbl_17756,asmbl_17759,asmbl_17761,asmbl_17762 scaffold_17 - retained_intron 2535887-2536718 asmbl_17757 // Retained and Spliced Intron # retained_intron 2533988-2534159 (orient:-) max_ev_support = 1 # spliced_intron 2533988-2534159 (orient:-) max_ev_support = 2 scaffold_17 - intron 2533988-2534159 asmbl_17756,asmbl_17757,asmbl_17760 scaffold_17 - retained_intron 2533988-2534159 asmbl_17759 // Exon Skipping and Retention # skipped_exon 2740165-2740935 (orient:-) max_ev_support = 2 # retained_exon 2740686-2740806 (orient:-) max_ev_support = 2 scaffold_17 - retained_exons 2740686-2740806 asmbl_17780 scaffold_17 - intron_skips_exon 2740165-2740935 asmbl_17779 // Retained and Spliced Intron # retained_intron 3035297-3035419 (orient:-) max_ev_support = 3 # spliced_intron 3035297-3035419 (orient:-) max_ev_support = 1 scaffold_17 - intron 3035297-3035419 asmbl_17794 scaffold_17 - retained_intron 3035297-3035419 asmbl_17793 // Retained and Spliced Intron # retained_intron 3141752-3141861 (orient:-) max_ev_support = 1 # spliced_intron 3141752-3141861 (orient:-) max_ev_support = 2 scaffold_17 - intron 3141752-3141861 asmbl_17801 scaffold_17 - retained_intron 3141752-3141861 asmbl_17802,asmbl_17803 // Retained and Spliced Intron # retained_intron 3142038-3142233 (orient:-) max_ev_support = 1 # spliced_intron 3142038-3142233 (orient:-) max_ev_support = 2 scaffold_17 - intron 3142038-3142233 asmbl_17801 scaffold_17 - retained_intron 3142038-3142233 asmbl_17802,asmbl_17803 // Retained and Spliced Intron # retained_intron 3986624-3986812 (orient:-) max_ev_support = 3 # spliced_intron 3986624-3986812 (orient:-) max_ev_support = 2 scaffold_17 - intron 3986624-3986812 asmbl_17835,asmbl_17836 scaffold_17 - retained_intron 3986624-3986812 asmbl_17834 // Retained and Spliced Intron # retained_intron 3990087-3990195 (orient:-) max_ev_support = 1 # spliced_intron 3990087-3990195 (orient:-) max_ev_support = 2 scaffold_17 - intron 3990087-3990195 asmbl_17837 scaffold_17 - retained_intron 3990087-3990195 asmbl_17836,asmbl_17838 // Retained and Spliced Intron # retained_intron 3990235-3990481 (orient:-) max_ev_support = 1 # spliced_intron 3990235-3990481 (orient:-) max_ev_support = 2 scaffold_17 - intron 3990235-3990481 asmbl_17837 scaffold_17 - retained_intron 3990235-3990481 asmbl_17836,asmbl_17838 // Retained and Spliced Intron # retained_intron 3988304-3988434 (orient:-) max_ev_support = 2 # spliced_intron 3988304-3988434 (orient:-) max_ev_support = 1 scaffold_17 - intron 3988304-3988434 asmbl_17836,asmbl_17838 scaffold_17 - retained_intron 3988304-3988434 asmbl_17837 // Retained and Spliced Intron # retained_intron 3989814-3990042 (orient:-) max_ev_support = 1 # spliced_intron 3989814-3990042 (orient:-) max_ev_support = 2 scaffold_17 - intron 3989814-3990042 asmbl_17836,asmbl_17837 scaffold_17 - retained_intron 3989814-3990042 asmbl_17838 // Retained and Spliced Intron # retained_intron 4186382-4186960 (orient:-) max_ev_support = 1 # spliced_intron 4186382-4186960 (orient:-) max_ev_support = 2 scaffold_17 - intron 4186382-4186960 asmbl_17841 scaffold_17 - retained_intron 4186382-4186960 asmbl_17840,asmbl_17845 // Exon Skipping and Retention # skipped_exon 4186382-4188809 (orient:-) max_ev_support = 1 # retained_exon 4186961-4187913 (orient:-) max_ev_support = 2 scaffold_17 - retained_exons 4186961-4187913 asmbl_17841 scaffold_17 - intron_skips_exon 4186382-4188809 asmbl_17844 // Retained and Spliced Intron # retained_intron 5124487-5126010 (orient:-) max_ev_support = 1 # spliced_intron 5124487-5126010 (orient:-) max_ev_support = 1 scaffold_17 - intron 5124487-5126010 asmbl_17918 scaffold_17 - retained_intron 5124487-5126010 asmbl_17917 // Retained and Spliced Intron # retained_intron 5137331-5138143 (orient:-) max_ev_support = 1 # spliced_intron 5137331-5138143 (orient:-) max_ev_support = 2 scaffold_17 - intron 5137331-5138143 asmbl_17921 scaffold_17 - retained_intron 5137331-5138143 asmbl_17923,asmbl_17924 // Retained and Spliced Intron # retained_intron 5137391-5138143 (orient:-) max_ev_support = 1 # spliced_intron 5137391-5138143 (orient:-) max_ev_support = 2 scaffold_17 - intron 5137391-5138143 asmbl_17920 scaffold_17 - retained_intron 5137391-5138143 asmbl_17923,asmbl_17924 // Retained and Spliced Intron # retained_intron 5138001-5138143 (orient:-) max_ev_support = 1 # spliced_intron 5138001-5138143 (orient:-) max_ev_support = 2 scaffold_17 - intron 5138001-5138143 asmbl_17922 scaffold_17 - retained_intron 5138001-5138143 asmbl_17923,asmbl_17924 // Retained and Spliced Intron # retained_intron 5403268-5403361 (orient:-) max_ev_support = 3 # spliced_intron 5403268-5403361 (orient:-) max_ev_support = 1 scaffold_17 - intron 5403268-5403361 asmbl_17933 scaffold_17 - retained_intron 5403268-5403361 asmbl_17932 // Exon Skipping and Retention # skipped_exon 5489357-5490876 (orient:-) max_ev_support = 1 # retained_exon 5490393-5490524 (orient:-) max_ev_support = 2 scaffold_17 - retained_exons 5490393-5490524 asmbl_17939 scaffold_17 - intron_skips_exon 5489357-5490876 asmbl_17940 // Retained and Spliced Intron # retained_intron 5710589-5710711 (orient:-) max_ev_support = 2 # spliced_intron 5710589-5710711 (orient:-) max_ev_support = 1 scaffold_17 - intron 5710589-5710711 asmbl_17950 scaffold_17 - retained_intron 5710589-5710711 asmbl_17948,asmbl_17949,asmbl_17951 // Retained and Spliced Intron # retained_intron 5711015-5711316 (orient:-) max_ev_support = 2 # spliced_intron 5711015-5711316 (orient:-) max_ev_support = 2 scaffold_17 - intron 5711015-5711316 asmbl_17948,asmbl_17950 scaffold_17 - retained_intron 5711015-5711316 asmbl_17949,asmbl_17951 // Retained and Spliced Intron # retained_intron 5711677-5712050 (orient:-) max_ev_support = 1 # spliced_intron 5711677-5712050 (orient:-) max_ev_support = 2 scaffold_17 - intron 5711677-5712050 asmbl_17948,asmbl_17949,asmbl_17950 scaffold_17 - retained_intron 5711677-5712050 asmbl_17951 // Exon Skipping and Retention # skipped_exon 6203941-6205818 (orient:-) max_ev_support = 2 # retained_exon 6204733-6204817 (orient:-) max_ev_support = 2 scaffold_17 - retained_exons 6204733-6204817 asmbl_17974,asmbl_17975 scaffold_17 - intron_skips_exon 6203941-6205818 asmbl_17976 // Retained and Spliced Intron # retained_intron 6803623-6804157 (orient:-) max_ev_support = 1 # spliced_intron 6803623-6804157 (orient:-) max_ev_support = 1 scaffold_17 - intron 6803623-6804157 asmbl_17986,asmbl_17988 scaffold_17 - retained_intron 6803623-6804157 asmbl_17987 // Exon Skipping and Retention # skipped_exon 6819825-6821051 (orient:-) max_ev_support = 1 # retained_exon 6820268-6820384 (orient:-) max_ev_support = 1 scaffold_17 - retained_exons 6820268-6820384 asmbl_17989 scaffold_17 - intron_skips_exon 6819825-6821051 asmbl_17993,asmbl_17994 // Exon Skipping and Retention # skipped_exon 6821270-6824128 (orient:-) max_ev_support = 1 # retained_exon 6822984-6823016 (orient:-) max_ev_support = 1 scaffold_17 - retained_exons 6822984-6823016 asmbl_17994 scaffold_17 - intron_skips_exon 6821270-6824128 asmbl_17993 // Retained and Spliced Intron # retained_intron 6975317-6976246 (orient:-) max_ev_support = 2 # spliced_intron 6975317-6976246 (orient:-) max_ev_support = 2 scaffold_17 - intron 6975317-6976246 asmbl_18015,asmbl_18016 scaffold_17 - retained_intron 6975317-6976246 asmbl_18014 // Retained and Spliced Intron # retained_intron 6976792-6976967 (orient:-) max_ev_support = 1 # spliced_intron 6976792-6976967 (orient:-) max_ev_support = 2 scaffold_17 - intron 6976792-6976967 asmbl_18014,asmbl_18015 scaffold_17 - retained_intron 6976792-6976967 asmbl_18016 // Retained and Spliced Intron # retained_intron 7006596-7009068 (orient:-) max_ev_support = 1 # spliced_intron 7006596-7009068 (orient:-) max_ev_support = 1 scaffold_17 - intron 7006596-7009068 asmbl_18018,asmbl_18020 scaffold_17 - retained_intron 7006596-7009068 asmbl_18019 // Retained and Spliced Intron # retained_intron 7027645-7027894 (orient:-) max_ev_support = 3 # spliced_intron 7027645-7027894 (orient:-) max_ev_support = 1 scaffold_17 - intron 7027645-7027894 asmbl_18022 scaffold_17 - retained_intron 7027645-7027894 asmbl_18021 // Retained and Spliced Intron # retained_intron 7038519-7038718 (orient:-) max_ev_support = 1 # spliced_intron 7038519-7038718 (orient:-) max_ev_support = 2 scaffold_17 - intron 7038519-7038718 asmbl_18025,asmbl_18027 scaffold_17 - retained_intron 7038519-7038718 asmbl_18026 // Retained and Spliced Intron # retained_intron 7054908-7055141 (orient:-) max_ev_support = 1 # spliced_intron 7054908-7055141 (orient:-) max_ev_support = 2 scaffold_17 - intron 7054908-7055141 asmbl_18029 scaffold_17 - retained_intron 7054908-7055141 asmbl_18030 // Retained and Spliced Intron # retained_intron 7116861-7117011 (orient:-) max_ev_support = 3 # spliced_intron 7116861-7117011 (orient:-) max_ev_support = 3 scaffold_17 - intron 7116861-7117011 asmbl_18043,asmbl_18045 scaffold_17 - retained_intron 7116861-7117011 asmbl_18044,asmbl_18046 // Exon Skipping and Retention # skipped_exon 7959936-7960883 (orient:-) max_ev_support = 2 # retained_exon 7960323-7960383 (orient:-) max_ev_support = 2 scaffold_17 - retained_exons 7960323-7960383 asmbl_18064 scaffold_17 - intron_skips_exon 7959936-7960883 asmbl_18065 // Retained and Spliced Intron # retained_intron 7965060-7965092 (orient:-) max_ev_support = 2 # spliced_intron 7965060-7965092 (orient:-) max_ev_support = 1 scaffold_17 - intron 7965060-7965092 asmbl_18068 scaffold_17 - retained_intron 7965060-7965092 asmbl_18066,asmbl_18067 // Retained and Spliced Intron # retained_intron 8044838-8044930 (orient:-) max_ev_support = 2 # spliced_intron 8044838-8044930 (orient:-) max_ev_support = 2 scaffold_17 - intron 8044838-8044930 asmbl_18070 scaffold_17 - retained_intron 8044838-8044930 asmbl_18071,asmbl_18072 // Retained and Spliced Intron # retained_intron 8303687-8303849 (orient:-) max_ev_support = 1 # spliced_intron 8303687-8303849 (orient:-) max_ev_support = 2 scaffold_17 - intron 8303687-8303849 asmbl_18084,asmbl_18085 scaffold_17 - retained_intron 8303687-8303849 asmbl_18086 // Exon Skipping and Retention # skipped_exon 8605578-8605835 (orient:-) max_ev_support = 3 # retained_exon 8605674-8605727 (orient:-) max_ev_support = 3 scaffold_17 - retained_exons 8605674-8605727 asmbl_18103 scaffold_17 - intron_skips_exon 8605578-8605835 asmbl_18104 // Retained and Spliced Intron # retained_intron 8640140-8640241 (orient:-) max_ev_support = 1 # spliced_intron 8640140-8640241 (orient:-) max_ev_support = 2 scaffold_17 - intron 8640140-8640241 asmbl_18108 scaffold_17 - retained_intron 8640140-8640241 asmbl_18109 // Retained and Spliced Intron # retained_intron 8871672-8871801 (orient:-) max_ev_support = 2 # spliced_intron 8871672-8871801 (orient:-) max_ev_support = 2 scaffold_17 - intron 8871672-8871801 asmbl_18130,asmbl_18131 scaffold_17 - retained_intron 8871672-8871801 asmbl_18129 // Retained and Spliced Intron # retained_intron 9029724-9030391 (orient:-) max_ev_support = 2 # spliced_intron 9029724-9030391 (orient:-) max_ev_support = 2 scaffold_17 - intron 9029724-9030391 asmbl_18139,asmbl_18140,asmbl_18142,asmbl_18143 scaffold_17 - retained_intron 9029724-9030391 asmbl_18138 // Retained and Spliced Intron # retained_intron 9029724-9030964 (orient:-) max_ev_support = 2 # spliced_intron 9029724-9030964 (orient:-) max_ev_support = 1 scaffold_17 - intron 9029724-9030964 asmbl_18141 scaffold_17 - retained_intron 9029724-9030964 asmbl_18138 // Retained and Spliced Intron # retained_intron 9030443-9030964 (orient:-) max_ev_support = 2 # spliced_intron 9030443-9030964 (orient:-) max_ev_support = 2 scaffold_17 - intron 9030443-9030964 asmbl_18139,asmbl_18140,asmbl_18142,asmbl_18143 scaffold_17 - retained_intron 9030443-9030964 asmbl_18138 // Exon Skipping and Retention # skipped_exon 9029724-9030964 (orient:-) max_ev_support = 1 # retained_exon 9030392-9030442 (orient:-) max_ev_support = 2 scaffold_17 - retained_exons 9030392-9030442 asmbl_18139,asmbl_18140,asmbl_18142,asmbl_18143 scaffold_17 - intron_skips_exon 9029724-9030964 asmbl_18141 // Exon Skipping and Retention # skipped_exon 9029724-9031727 (orient:-) max_ev_support = 1 # retained_exon 9030392-9031033 (orient:-) max_ev_support = 1 scaffold_17 - retained_exons 9030392-9030442,9030965-9031033 asmbl_18140,asmbl_18142,asmbl_18143 scaffold_17 - intron_skips_exon 9029724-9031727 asmbl_18144 // Exon Skipping and Retention # skipped_exon 9032238-9033472 (orient:-) max_ev_support = 1 # retained_exon 9033136-9033165 (orient:-) max_ev_support = 1 scaffold_17 - retained_exons 9033136-9033165 asmbl_18140,asmbl_18143,asmbl_18144 scaffold_17 - intron_skips_exon 9032238-9033472 asmbl_18141,asmbl_18142 // Retained and Spliced Intron # retained_intron 9088832-9088922 (orient:-) max_ev_support = 2 # spliced_intron 9088832-9088922 (orient:-) max_ev_support = 1 scaffold_17 - intron 9088832-9088922 asmbl_18150,asmbl_18152 scaffold_17 - retained_intron 9088832-9088922 asmbl_18148,asmbl_18149 // Retained and Spliced Intron # retained_intron 9088832-9088926 (orient:-) max_ev_support = 2 # spliced_intron 9088832-9088926 (orient:-) max_ev_support = 1 scaffold_17 - intron 9088832-9088926 asmbl_18151 scaffold_17 - retained_intron 9088832-9088926 asmbl_18148,asmbl_18149 // Retained and Spliced Intron # retained_intron 9095446-9095758 (orient:-) max_ev_support = 1 # spliced_intron 9095446-9095758 (orient:-) max_ev_support = 2 scaffold_17 - intron 9095446-9095758 asmbl_18154 scaffold_17 - retained_intron 9095446-9095758 asmbl_18155 // Retained and Spliced Intron # retained_intron 9592999-9593177 (orient:-) max_ev_support = 1 # spliced_intron 9592999-9593177 (orient:-) max_ev_support = 3 scaffold_17 - intron 9592999-9593177 asmbl_18181,asmbl_18183 scaffold_17 - retained_intron 9592999-9593177 asmbl_18182,asmbl_18184 // Exon Skipping and Retention # skipped_exon 9826533-9829262 (orient:-) max_ev_support = 1 # retained_exon 9827344-9827415 (orient:-) max_ev_support = 2 scaffold_17 - retained_exons 9827344-9827415 asmbl_18197,asmbl_18198,asmbl_18199 scaffold_17 - intron_skips_exon 9826533-9829262 asmbl_18200,asmbl_18201,asmbl_18202,asmbl_18203 // Retained and Spliced Intron # retained_intron 9854049-9854615 (orient:-) max_ev_support = 3 # spliced_intron 9854049-9854615 (orient:-) max_ev_support = 3 scaffold_17 - intron 9854049-9854615 asmbl_18209 scaffold_17 - retained_intron 9854049-9854615 asmbl_18210 // Retained and Spliced Intron # retained_intron 9867881-9867999 (orient:-) max_ev_support = 1 # spliced_intron 9867881-9867999 (orient:-) max_ev_support = 1 scaffold_17 - intron 9867881-9867999 asmbl_18214,asmbl_18216 scaffold_17 - retained_intron 9867881-9867999 asmbl_18213,asmbl_18215,asmbl_18217 // Retained and Spliced Intron # retained_intron 9868140-9868228 (orient:-) max_ev_support = 1 # spliced_intron 9868140-9868228 (orient:-) max_ev_support = 1 scaffold_17 - intron 9868140-9868228 asmbl_18213,asmbl_18214,asmbl_18216 scaffold_17 - retained_intron 9868140-9868228 asmbl_18215,asmbl_18217 // Retained and Spliced Intron # retained_intron 9868526-9868619 (orient:-) max_ev_support = 1 # spliced_intron 9868526-9868619 (orient:-) max_ev_support = 1 scaffold_17 - intron 9868526-9868619 asmbl_18213,asmbl_18214,asmbl_18215,asmbl_18216 scaffold_17 - retained_intron 9868526-9868619 asmbl_18217 // Retained and Spliced Intron # retained_intron 10037011-10037314 (orient:-) max_ev_support = 2 # spliced_intron 10037011-10037314 (orient:-) max_ev_support = 2 scaffold_17 - intron 10037011-10037314 asmbl_18224 scaffold_17 - retained_intron 10037011-10037314 asmbl_18223 // Retained and Spliced Intron # retained_intron 10037074-10037314 (orient:-) max_ev_support = 2 # spliced_intron 10037074-10037314 (orient:-) max_ev_support = 2 scaffold_17 - intron 10037074-10037314 asmbl_18225 scaffold_17 - retained_intron 10037074-10037314 asmbl_18223 // Retained and Spliced Intron # retained_intron 10240432-10240572 (orient:-) max_ev_support = 3 # spliced_intron 10240432-10240572 (orient:-) max_ev_support = 3 scaffold_17 - intron 10240432-10240572 asmbl_18237 scaffold_17 - retained_intron 10240432-10240572 asmbl_18238 // Retained and Spliced Intron # retained_intron 10838527-10838830 (orient:-) max_ev_support = 1 # spliced_intron 10838527-10838830 (orient:-) max_ev_support = 1 scaffold_17 - intron 10838527-10838830 asmbl_18251 scaffold_17 - retained_intron 10838527-10838830 asmbl_18250 // Retained and Spliced Intron # retained_intron 11034956-11035084 (orient:-) max_ev_support = 1 # spliced_intron 11034956-11035084 (orient:-) max_ev_support = 2 scaffold_17 - intron 11034956-11035084 asmbl_18260,asmbl_18265,asmbl_18266,asmbl_18267 scaffold_17 - retained_intron 11034956-11035084 asmbl_18264 // Exon Skipping and Retention # skipped_exon 11035300-11036021 (orient:-) max_ev_support = 1 # retained_exon 11035476-11035526 (orient:-) max_ev_support = 1 scaffold_17 - retained_exons 11035476-11035526 asmbl_18267 scaffold_17 - intron_skips_exon 11035300-11036021 asmbl_18266 // Exon Skipping and Retention # skipped_exon 12221211-12223396 (orient:-) max_ev_support = 1 # retained_exon 12221530-12222989 (orient:-) max_ev_support = 2 scaffold_17 - retained_exons 12221530-12221665,12222813-12222989 asmbl_18320 scaffold_17 - intron_skips_exon 12221211-12223396 asmbl_18321 // Exon Skipping and Retention # skipped_exon 12368475-12371115 (orient:-) max_ev_support = 1 # retained_exon 12370509-12370560 (orient:-) max_ev_support = 1 scaffold_17 - retained_exons 12370509-12370560 asmbl_18326,asmbl_18328,asmbl_18329 scaffold_17 - intron_skips_exon 12368475-12371115 asmbl_18327 // Retained and Spliced Intron # retained_intron 13072493-13072592 (orient:-) max_ev_support = 1 # spliced_intron 13072493-13072592 (orient:-) max_ev_support = 1 scaffold_17 - intron 13072493-13072592 asmbl_18349 scaffold_17 - retained_intron 13072493-13072592 asmbl_18348 // Retained and Spliced Intron # retained_intron 13196844-13197082 (orient:-) max_ev_support = 1 # spliced_intron 13196844-13197082 (orient:-) max_ev_support = 2 scaffold_17 - intron 13196844-13197082 asmbl_18362 scaffold_17 - retained_intron 13196844-13197082 asmbl_18363 // Retained and Spliced Intron # retained_intron 13196891-13197082 (orient:-) max_ev_support = 1 # spliced_intron 13196891-13197082 (orient:-) max_ev_support = 3 scaffold_17 - intron 13196891-13197082 asmbl_18360,asmbl_18361 scaffold_17 - retained_intron 13196891-13197082 asmbl_18363 // Retained and Spliced Intron # retained_intron 13467626-13467758 (orient:-) max_ev_support = 2 # spliced_intron 13467626-13467758 (orient:-) max_ev_support = 2 scaffold_17 - intron 13467626-13467758 asmbl_18368 scaffold_17 - retained_intron 13467626-13467758 asmbl_18369 // Retained and Spliced Intron # retained_intron 13844846-13845553 (orient:-) max_ev_support = 2 # spliced_intron 13844846-13845553 (orient:-) max_ev_support = 2 scaffold_17 - intron 13844846-13845553 asmbl_18381 scaffold_17 - retained_intron 13844846-13845553 asmbl_18380,asmbl_18382 // Retained and Spliced Intron # retained_intron 13951302-13951602 (orient:-) max_ev_support = 1 # spliced_intron 13951302-13951602 (orient:-) max_ev_support = 1 scaffold_17 - intron 13951302-13951602 asmbl_18389 scaffold_17 - retained_intron 13951302-13951602 asmbl_18388 // Retained and Spliced Intron # retained_intron 13962267-13962296 (orient:-) max_ev_support = 4 # spliced_intron 13962267-13962296 (orient:-) max_ev_support = 2 scaffold_17 - intron 13962267-13962296 asmbl_18394,asmbl_18395 scaffold_17 - retained_intron 13962267-13962296 asmbl_18391,asmbl_18392,asmbl_18393 // Exon Skipping and Retention # skipped_exon 13972254-13973688 (orient:-) max_ev_support = 2 # retained_exon 13973355-13973375 (orient:-) max_ev_support = 2 scaffold_17 - retained_exons 13973355-13973375 asmbl_18396 scaffold_17 - intron_skips_exon 13972254-13973688 asmbl_18397,asmbl_18399 // Retained and Spliced Intron # retained_intron 14037114-14037195 (orient:-) max_ev_support = 1 # spliced_intron 14037114-14037195 (orient:-) max_ev_support = 1 scaffold_17 - intron 14037114-14037195 asmbl_18402 scaffold_17 - retained_intron 14037114-14037195 asmbl_18400,asmbl_18401 // Retained and Spliced Intron # retained_intron 14110311-14110420 (orient:-) max_ev_support = 1 # spliced_intron 14110311-14110420 (orient:-) max_ev_support = 2 scaffold_17 - intron 14110311-14110420 asmbl_18407,asmbl_18409 scaffold_17 - retained_intron 14110311-14110420 asmbl_18408 // Retained and Spliced Intron # retained_intron 14097321-14097576 (orient:-) max_ev_support = 1 # spliced_intron 14097321-14097576 (orient:-) max_ev_support = 2 scaffold_17 - intron 14097321-14097576 asmbl_18407,asmbl_18408 scaffold_17 - retained_intron 14097321-14097576 asmbl_18409 // Exon Skipping and Retention # skipped_exon 14325639-14325908 (orient:-) max_ev_support = 2 # retained_exon 14325767-14325815 (orient:-) max_ev_support = 2 scaffold_17 - retained_exons 14325767-14325815 asmbl_18422 scaffold_17 - intron_skips_exon 14325639-14325908 asmbl_18421 // Retained and Spliced Intron # retained_intron 14325639-14325766 (orient:-) max_ev_support = 1 # spliced_intron 14325639-14325766 (orient:-) max_ev_support = 2 scaffold_17 - intron 14325639-14325766 asmbl_18422 scaffold_17 - retained_intron 14325639-14325766 asmbl_18423 // Retained and Spliced Intron # retained_intron 14349448-14349635 (orient:-) max_ev_support = 1 # spliced_intron 14349448-14349635 (orient:-) max_ev_support = 2 scaffold_17 - intron 14349448-14349635 asmbl_18424,asmbl_18427 scaffold_17 - retained_intron 14349448-14349635 asmbl_18426 // Exon Skipping and Retention # skipped_exon 14349448-14351180 (orient:-) max_ev_support = 2 # retained_exon 14349636-14350040 (orient:-) max_ev_support = 1 scaffold_17 - retained_exons 14349636-14349704,14350011-14350040 asmbl_18427 scaffold_17 - intron_skips_exon 14349448-14351180 asmbl_18425 // Retained and Spliced Intron # retained_intron 14627703-14627832 (orient:-) max_ev_support = 1 # spliced_intron 14627703-14627832 (orient:-) max_ev_support = 1 scaffold_17 - intron 14627703-14627832 asmbl_18437,asmbl_18439 scaffold_17 - retained_intron 14627703-14627832 asmbl_18436,asmbl_18438 // Retained and Spliced Intron # retained_intron 14627370-14627619 (orient:-) max_ev_support = 1 # spliced_intron 14627370-14627619 (orient:-) max_ev_support = 1 scaffold_17 - intron 14627370-14627619 asmbl_18436,asmbl_18437,asmbl_18438 scaffold_17 - retained_intron 14627370-14627619 asmbl_18439 // Retained and Spliced Intron # retained_intron 14646820-14646843 (orient:-) max_ev_support = 1 # spliced_intron 14646820-14646843 (orient:-) max_ev_support = 1 scaffold_17 - intron 14646820-14646843 asmbl_18441,asmbl_18442 scaffold_17 - retained_intron 14646820-14646843 asmbl_18443,asmbl_18444 // Exon Skipping and Retention # skipped_exon 3607-4095 (orient:+) max_ev_support = 3 # retained_exon 3675-3812 (orient:+) max_ev_support = 3 scaffold_17 + retained_exons 3675-3812 asmbl_18532 scaffold_17 + intron_skips_exon 3607-4095 asmbl_18533 // Retained and Spliced Intron # retained_intron 538675-539181 (orient:+) max_ev_support = 2 # spliced_intron 538675-539181 (orient:+) max_ev_support = 2 scaffold_17 + intron 538675-539181 asmbl_18543,asmbl_18550 scaffold_17 + retained_intron 538675-539181 asmbl_18544,asmbl_18547 // Retained and Spliced Intron # retained_intron 538675-539184 (orient:+) max_ev_support = 2 # spliced_intron 538675-539184 (orient:+) max_ev_support = 1 scaffold_17 + intron 538675-539184 asmbl_18545 scaffold_17 + retained_intron 538675-539184 asmbl_18544,asmbl_18547 // Retained and Spliced Intron # retained_intron 651449-651532 (orient:+) max_ev_support = 3 # spliced_intron 651449-651532 (orient:+) max_ev_support = 3 scaffold_17 + intron 651449-651532 asmbl_18553 scaffold_17 + retained_intron 651449-651532 asmbl_18554 // Exon Skipping and Retention # skipped_exon 791549-793111 (orient:+) max_ev_support = 1 # retained_exon 791861-791911 (orient:+) max_ev_support = 1 scaffold_17 + retained_exons 791861-791911 asmbl_18574,asmbl_18576 scaffold_17 + intron_skips_exon 791549-793111 asmbl_18575 // Retained and Spliced Intron # retained_intron 793736-793904 (orient:+) max_ev_support = 1 # spliced_intron 793736-793904 (orient:+) max_ev_support = 1 scaffold_17 + intron 793736-793904 asmbl_18574,asmbl_18576,asmbl_18577 scaffold_17 + retained_intron 793736-793904 asmbl_18575 // Retained and Spliced Intron # retained_intron 793926-794149 (orient:+) max_ev_support = 1 # spliced_intron 793926-794149 (orient:+) max_ev_support = 1 scaffold_17 + intron 793926-794149 asmbl_18574,asmbl_18576,asmbl_18577 scaffold_17 + retained_intron 793926-794149 asmbl_18575 // Retained and Spliced Intron # retained_intron 1128141-1128599 (orient:+) max_ev_support = 3 # spliced_intron 1128141-1128599 (orient:+) max_ev_support = 2 scaffold_17 + intron 1128141-1128599 asmbl_18594 scaffold_17 + retained_intron 1128141-1128599 asmbl_18590,asmbl_18591 // Retained and Spliced Intron # retained_intron 1128141-1128819 (orient:+) max_ev_support = 3 # spliced_intron 1128141-1128819 (orient:+) max_ev_support = 2 scaffold_17 + intron 1128141-1128819 asmbl_18593 scaffold_17 + retained_intron 1128141-1128819 asmbl_18590,asmbl_18591 // Retained and Spliced Intron # retained_intron 1353517-1353628 (orient:+) max_ev_support = 3 # spliced_intron 1353517-1353628 (orient:+) max_ev_support = 2 scaffold_17 + intron 1353517-1353628 asmbl_18604 scaffold_17 + retained_intron 1353517-1353628 asmbl_18603 // Retained and Spliced Intron # retained_intron 1523950-1524129 (orient:+) max_ev_support = 2 # spliced_intron 1523950-1524129 (orient:+) max_ev_support = 1 scaffold_17 + intron 1523950-1524129 asmbl_18613 scaffold_17 + retained_intron 1523950-1524129 asmbl_18612 // Retained and Spliced Intron # retained_intron 1592933-1593714 (orient:+) max_ev_support = 3 # spliced_intron 1592933-1593714 (orient:+) max_ev_support = 2 scaffold_17 + intron 1592933-1593714 asmbl_18615 scaffold_17 + retained_intron 1592933-1593714 asmbl_18614 // Retained and Spliced Intron # retained_intron 1602805-1602948 (orient:+) max_ev_support = 1 # spliced_intron 1602805-1602948 (orient:+) max_ev_support = 2 scaffold_17 + intron 1602805-1602948 asmbl_18617 scaffold_17 + retained_intron 1602805-1602948 asmbl_18618 // Exon Skipping and Retention # skipped_exon 1665159-1667659 (orient:+) max_ev_support = 2 # retained_exon 1665736-1665886 (orient:+) max_ev_support = 2 scaffold_17 + retained_exons 1665736-1665886 asmbl_18620,asmbl_18622 scaffold_17 + intron_skips_exon 1665159-1667659 asmbl_18621 // Retained and Spliced Intron # retained_intron 1729059-1729151 (orient:+) max_ev_support = 1 # spliced_intron 1729059-1729151 (orient:+) max_ev_support = 2 scaffold_17 + intron 1729059-1729151 asmbl_18625,asmbl_18627 scaffold_17 + retained_intron 1729059-1729151 asmbl_18628 // Exon Skipping and Retention # skipped_exon 2354078-2358162 (orient:+) max_ev_support = 1 # retained_exon 2354832-2357750 (orient:+) max_ev_support = 2 scaffold_17 + retained_exons 2354832-2355038,2355383-2355463,2357645-2357750 asmbl_18637 scaffold_17 + retained_exons 2354832-2355038,2357645-2357750 asmbl_18643 scaffold_17 + intron_skips_exon 2354078-2355866 asmbl_18639 scaffold_17 + intron_skips_exon 2355973-2358162 asmbl_18639 // Exon Skipping and Retention # skipped_exon 2354078-2358464 (orient:+) max_ev_support = 1 # retained_exon 2354832-2358219 (orient:+) max_ev_support = 2 scaffold_17 + retained_exons 2354832-2355038,2355383-2355463,2357645-2357750,2358163-2358219 asmbl_18637 scaffold_17 + retained_exons 2354832-2355038,2357645-2357750,2358163-2358219 asmbl_18643 scaffold_17 + intron_skips_exon 2354078-2355866 asmbl_18642 scaffold_17 + intron_skips_exon 2356401-2358464 asmbl_18642 // Exon Skipping and Retention # skipped_exon 2355039-2357644 (orient:+) max_ev_support = 1 # retained_exon 2355383-2355463 (orient:+) max_ev_support = 2 scaffold_17 + retained_exons 2355383-2355463 asmbl_18638,asmbl_18640,asmbl_18637 scaffold_17 + intron_skips_exon 2355039-2357644 asmbl_18643 // Exon Skipping and Retention # skipped_exon 2355039-2358464 (orient:+) max_ev_support = 1 # retained_exon 2355383-2358219 (orient:+) max_ev_support = 2 scaffold_17 + retained_exons 2355383-2355463,2357645-2357750,2358163-2358219 asmbl_18637 scaffold_17 + intron_skips_exon 2355039-2355866 asmbl_18641 scaffold_17 + intron_skips_exon 2356401-2358464 asmbl_18641 // Exon Skipping and Retention # skipped_exon 2355973-2358162 (orient:+) max_ev_support = 1 # retained_exon 2357645-2357750 (orient:+) max_ev_support = 2 scaffold_17 + retained_exons 2357645-2357750 asmbl_18637,asmbl_18643 scaffold_17 + intron_skips_exon 2355973-2358162 asmbl_18640,asmbl_18639 // Exon Skipping and Retention # skipped_exon 2356401-2358464 (orient:+) max_ev_support = 1 # retained_exon 2357645-2358219 (orient:+) max_ev_support = 2 scaffold_17 + retained_exons 2357645-2357750,2358163-2358219 asmbl_18637,asmbl_18643 scaffold_17 + intron_skips_exon 2356401-2358464 asmbl_18638,asmbl_18641,asmbl_18642 // Exon Skipping and Retention # skipped_exon 2354078-2355866 (orient:+) max_ev_support = 1 # retained_exon 2354832-2355463 (orient:+) max_ev_support = 1 scaffold_17 + retained_exons 2354832-2355038,2355383-2355463 asmbl_18638,asmbl_18640 scaffold_17 + intron_skips_exon 2354078-2355866 asmbl_18639,asmbl_18642 // Exon Skipping and Retention # skipped_exon 2355039-2355866 (orient:+) max_ev_support = 1 # retained_exon 2355383-2355463 (orient:+) max_ev_support = 2 scaffold_17 + retained_exons 2355383-2355463 asmbl_18638,asmbl_18640,asmbl_18637 scaffold_17 + intron_skips_exon 2355039-2355866 asmbl_18641 // Exon Skipping and Retention # skipped_exon 2355464-2357644 (orient:+) max_ev_support = 2 # retained_exon 2355867-2356400 (orient:+) max_ev_support = 1 scaffold_17 + retained_exons 2355867-2355972,2356344-2356400 asmbl_18638,asmbl_18641,asmbl_18642 scaffold_17 + intron_skips_exon 2355464-2357644 asmbl_18637 // Exon Skipping and Retention # skipped_exon 2355973-2358162 (orient:+) max_ev_support = 1 # retained_exon 2356344-2356400 (orient:+) max_ev_support = 1 scaffold_17 + retained_exons 2356344-2356400 asmbl_18638,asmbl_18641,asmbl_18642 scaffold_17 + intron_skips_exon 2355973-2358162 asmbl_18640,asmbl_18639 // Exon Skipping and Retention # skipped_exon 2355039-2357644 (orient:+) max_ev_support = 1 # retained_exon 2355867-2355972 (orient:+) max_ev_support = 1 scaffold_17 + retained_exons 2355867-2355972 asmbl_18639,asmbl_18640 scaffold_17 + intron_skips_exon 2355039-2357644 asmbl_18643 // Exon Skipping and Retention # skipped_exon 2356401-2358464 (orient:+) max_ev_support = 1 # retained_exon 2358163-2358219 (orient:+) max_ev_support = 1 scaffold_17 + retained_exons 2358163-2358219 asmbl_18639,asmbl_18640 scaffold_17 + intron_skips_exon 2356401-2358464 asmbl_18638,asmbl_18641,asmbl_18642 // Exon Skipping and Retention # skipped_exon 2355039-2357644 (orient:+) max_ev_support = 1 # retained_exon 2355867-2356400 (orient:+) max_ev_support = 1 scaffold_17 + retained_exons 2355867-2355972,2356344-2356400 asmbl_18638,asmbl_18641,asmbl_18642 scaffold_17 + intron_skips_exon 2355039-2357644 asmbl_18643 // Retained and Spliced Intron # retained_intron 2566428-2566630 (orient:+) max_ev_support = 2 # spliced_intron 2566428-2566630 (orient:+) max_ev_support = 2 scaffold_17 + intron 2566428-2566630 asmbl_18663,asmbl_18666 scaffold_17 + retained_intron 2566428-2566630 asmbl_18664 // Retained and Spliced Intron # retained_intron 2566428-2566633 (orient:+) max_ev_support = 2 # spliced_intron 2566428-2566633 (orient:+) max_ev_support = 2 scaffold_17 + intron 2566428-2566633 asmbl_18662 scaffold_17 + retained_intron 2566428-2566633 asmbl_18664 // Exon Skipping and Retention # skipped_exon 2634157-2636152 (orient:+) max_ev_support = 3 # retained_exon 2634874-2635014 (orient:+) max_ev_support = 1 scaffold_17 + retained_exons 2634874-2635014 asmbl_18675,asmbl_18676 scaffold_17 + intron_skips_exon 2634157-2636152 asmbl_18669 // Exon Skipping and Retention # skipped_exon 2681607-2682291 (orient:+) max_ev_support = 2 # retained_exon 2681893-2682008 (orient:+) max_ev_support = 2 scaffold_17 + retained_exons 2681893-2682008 asmbl_18680,asmbl_18682 scaffold_17 + intron_skips_exon 2681607-2682291 asmbl_18679,asmbl_18683 // Retained and Spliced Intron # retained_intron 2685101-2685190 (orient:+) max_ev_support = 2 # spliced_intron 2685101-2685190 (orient:+) max_ev_support = 2 scaffold_17 + intron 2685101-2685190 asmbl_18679,asmbl_18680,asmbl_18682,asmbl_18683,asmbl_18684 scaffold_17 + retained_intron 2685101-2685190 asmbl_18681 // Retained and Spliced Intron # retained_intron 2684608-2684736 (orient:+) max_ev_support = 1 # spliced_intron 2684608-2684736 (orient:+) max_ev_support = 2 scaffold_17 + intron 2684608-2684736 asmbl_18679,asmbl_18680,asmbl_18682,asmbl_18683 scaffold_17 + retained_intron 2684608-2684736 asmbl_18684 // Retained and Spliced Intron # retained_intron 2719992-2720105 (orient:+) max_ev_support = 3 # spliced_intron 2719992-2720105 (orient:+) max_ev_support = 1 scaffold_17 + intron 2719992-2720105 asmbl_18694 scaffold_17 + retained_intron 2719992-2720105 asmbl_18692,asmbl_18693 // Retained and Spliced Intron # retained_intron 2720917-2721238 (orient:+) max_ev_support = 3 # spliced_intron 2720917-2721238 (orient:+) max_ev_support = 3 scaffold_17 + intron 2720917-2721238 asmbl_18693,asmbl_18694 scaffold_17 + retained_intron 2720917-2721238 asmbl_18692 // Retained and Spliced Intron # retained_intron 2721370-2721870 (orient:+) max_ev_support = 3 # spliced_intron 2721370-2721870 (orient:+) max_ev_support = 3 scaffold_17 + intron 2721370-2721870 asmbl_18693,asmbl_18694 scaffold_17 + retained_intron 2721370-2721870 asmbl_18692 // Retained and Spliced Intron # retained_intron 3795219-3795317 (orient:+) max_ev_support = 1 # spliced_intron 3795219-3795317 (orient:+) max_ev_support = 2 scaffold_17 + intron 3795219-3795317 asmbl_18737 scaffold_17 + retained_intron 3795219-3795317 asmbl_18738 // Retained and Spliced Intron # retained_intron 3839188-3839302 (orient:+) max_ev_support = 1 # spliced_intron 3839188-3839302 (orient:+) max_ev_support = 2 scaffold_17 + intron 3839188-3839302 asmbl_18741,asmbl_18744 scaffold_17 + retained_intron 3839188-3839302 asmbl_18743 // Retained and Spliced Intron # retained_intron 3998088-3998274 (orient:+) max_ev_support = 2 # spliced_intron 3998088-3998274 (orient:+) max_ev_support = 1 scaffold_17 + intron 3998088-3998274 asmbl_18756,asmbl_18758 scaffold_17 + retained_intron 3998088-3998274 asmbl_18753,asmbl_18754,asmbl_18755,asmbl_18757,asmbl_18759,asmbl_18760 // Retained and Spliced Intron # retained_intron 3998584-3998705 (orient:+) max_ev_support = 2 # spliced_intron 3998584-3998705 (orient:+) max_ev_support = 1 scaffold_17 + intron 3998584-3998705 asmbl_18756,asmbl_18760 scaffold_17 + retained_intron 3998584-3998705 asmbl_18753,asmbl_18754,asmbl_18755,asmbl_18758,asmbl_18759 // Retained and Spliced Intron # retained_intron 3998584-3998790 (orient:+) max_ev_support = 2 # spliced_intron 3998584-3998790 (orient:+) max_ev_support = 1 scaffold_17 + intron 3998584-3998790 asmbl_18757 scaffold_17 + retained_intron 3998584-3998790 asmbl_18753,asmbl_18754,asmbl_18755,asmbl_18758,asmbl_18759 // Retained and Spliced Intron # retained_intron 3998821-3998969 (orient:+) max_ev_support = 1 # spliced_intron 3998821-3998969 (orient:+) max_ev_support = 2 scaffold_17 + intron 3998821-3998969 asmbl_18753,asmbl_18756,asmbl_18757,asmbl_18759,asmbl_18760 scaffold_17 + retained_intron 3998821-3998969 asmbl_18754,asmbl_18755,asmbl_18758 // Exon Skipping and Retention # skipped_exon 4004287-4005564 (orient:+) max_ev_support = 1 # retained_exon 4005321-4005465 (orient:+) max_ev_support = 2 scaffold_17 + retained_exons 4005321-4005465 asmbl_18761 scaffold_17 + intron_skips_exon 4004287-4005564 asmbl_18762 // Retained and Spliced Intron # retained_intron 4005466-4005564 (orient:+) max_ev_support = 1 # spliced_intron 4005466-4005564 (orient:+) max_ev_support = 2 scaffold_17 + intron 4005466-4005564 asmbl_18761 scaffold_17 + retained_intron 4005466-4005564 asmbl_18763 // Retained and Spliced Intron # retained_intron 4267792-4267908 (orient:+) max_ev_support = 2 # spliced_intron 4267792-4267908 (orient:+) max_ev_support = 2 scaffold_17 + intron 4267792-4267908 asmbl_18776 scaffold_17 + retained_intron 4267792-4267908 asmbl_18779 // Retained and Spliced Intron # retained_intron 4267993-4268192 (orient:+) max_ev_support = 2 # spliced_intron 4267993-4268192 (orient:+) max_ev_support = 2 scaffold_17 + intron 4267993-4268192 asmbl_18776 scaffold_17 + retained_intron 4267993-4268192 asmbl_18779 // Exon Skipping and Retention # skipped_exon 5071670-5072556 (orient:+) max_ev_support = 3 # retained_exon 5072141-5072246 (orient:+) max_ev_support = 3 scaffold_17 + retained_exons 5072141-5072246 asmbl_18803,asmbl_18804,asmbl_18806,asmbl_18808 scaffold_17 + intron_skips_exon 5071670-5072556 asmbl_18802,asmbl_18805,asmbl_18807 // Retained and Spliced Intron # retained_intron 5074760-5074970 (orient:+) max_ev_support = 1 # spliced_intron 5074760-5074970 (orient:+) max_ev_support = 1 scaffold_17 + intron 5074760-5074970 asmbl_18810 scaffold_17 + retained_intron 5074760-5074970 asmbl_18809 // Exon Skipping and Retention # skipped_exon 5096466-5097292 (orient:+) max_ev_support = 1 # retained_exon 5097033-5097177 (orient:+) max_ev_support = 2 scaffold_17 + retained_exons 5097033-5097177 asmbl_18811 scaffold_17 + intron_skips_exon 5096466-5097292 asmbl_18812 // Exon Skipping and Retention # skipped_exon 5095847-5097032 (orient:+) max_ev_support = 2 # retained_exon 5096321-5096465 (orient:+) max_ev_support = 2 scaffold_17 + retained_exons 5096321-5096465 asmbl_18812 scaffold_17 + intron_skips_exon 5095847-5097032 asmbl_18811 // Exon Skipping and Retention # skipped_exon 5323173-5324241 (orient:+) max_ev_support = 2 # retained_exon 5323681-5323701 (orient:+) max_ev_support = 2 scaffold_17 + retained_exons 5323681-5323701 asmbl_18817 scaffold_17 + intron_skips_exon 5323173-5324241 asmbl_18816 // Exon Skipping and Retention # skipped_exon 5998506-6000825 (orient:+) max_ev_support = 1 # retained_exon 5998745-5999074 (orient:+) max_ev_support = 4 scaffold_17 + retained_exons 5998745-5999074 asmbl_18834 scaffold_17 + intron_skips_exon 5998506-6000825 asmbl_18837,asmbl_18838 // Exon Skipping and Retention # skipped_exon 6370660-6373383 (orient:+) max_ev_support = 1 # retained_exon 6370848-6371633 (orient:+) max_ev_support = 1 scaffold_17 + retained_exons 6370848-6370964,6371101-6371145,6371246-6371308,6371595-6371633 asmbl_18849 scaffold_17 + intron_skips_exon 6370660-6373383 asmbl_18848 // Retained and Spliced Intron # retained_intron 6390344-6390421 (orient:+) max_ev_support = 2 # spliced_intron 6390344-6390421 (orient:+) max_ev_support = 1 scaffold_17 + intron 6390344-6390421 asmbl_18851 scaffold_17 + retained_intron 6390344-6390421 asmbl_18850 // Retained and Spliced Intron # retained_intron 6684218-6684381 (orient:+) max_ev_support = 2 # spliced_intron 6684218-6684381 (orient:+) max_ev_support = 2 scaffold_17 + intron 6684218-6684381 asmbl_18866 scaffold_17 + retained_intron 6684218-6684381 asmbl_18864 // Retained and Spliced Intron # retained_intron 6684218-6684386 (orient:+) max_ev_support = 2 # spliced_intron 6684218-6684386 (orient:+) max_ev_support = 2 scaffold_17 + intron 6684218-6684386 asmbl_18865 scaffold_17 + retained_intron 6684218-6684386 asmbl_18864 // Retained and Spliced Intron # retained_intron 6808283-6808729 (orient:+) max_ev_support = 3 # spliced_intron 6808283-6808729 (orient:+) max_ev_support = 3 scaffold_17 + intron 6808283-6808729 asmbl_18877 scaffold_17 + retained_intron 6808283-6808729 asmbl_18878 // Retained and Spliced Intron # retained_intron 6808283-6808733 (orient:+) max_ev_support = 3 # spliced_intron 6808283-6808733 (orient:+) max_ev_support = 1 scaffold_17 + intron 6808283-6808733 asmbl_18879 scaffold_17 + retained_intron 6808283-6808733 asmbl_18878 // Retained and Spliced Intron # retained_intron 7023727-7024347 (orient:+) max_ev_support = 3 # spliced_intron 7023727-7024347 (orient:+) max_ev_support = 1 scaffold_17 + intron 7023727-7024347 asmbl_18887 scaffold_17 + retained_intron 7023727-7024347 asmbl_18886 // Retained and Spliced Intron # retained_intron 7046365-7047019 (orient:+) max_ev_support = 2 # spliced_intron 7046365-7047019 (orient:+) max_ev_support = 3 scaffold_17 + intron 7046365-7047019 asmbl_18890 scaffold_17 + retained_intron 7046365-7047019 asmbl_18888 // Retained and Spliced Intron # retained_intron 7046365-7049246 (orient:+) max_ev_support = 4 # spliced_intron 7046365-7049246 (orient:+) max_ev_support = 3 scaffold_17 + intron 7046365-7049246 asmbl_18889 scaffold_17 + retained_intron 7046365-7049246 asmbl_18888 // Retained and Spliced Intron # retained_intron 7047119-7049246 (orient:+) max_ev_support = 4 # spliced_intron 7047119-7049246 (orient:+) max_ev_support = 3 scaffold_17 + intron 7047119-7049246 asmbl_18890 scaffold_17 + retained_intron 7047119-7049246 asmbl_18888 // Retained and Spliced Intron # retained_intron 7049932-7050209 (orient:+) max_ev_support = 2 # spliced_intron 7049932-7050209 (orient:+) max_ev_support = 3 scaffold_17 + intron 7049932-7050209 asmbl_18889,asmbl_18890 scaffold_17 + retained_intron 7049932-7050209 asmbl_18888 // Exon Skipping and Retention # skipped_exon 7046365-7049246 (orient:+) max_ev_support = 3 # retained_exon 7047020-7047118 (orient:+) max_ev_support = 3 scaffold_17 + retained_exons 7047020-7047118 asmbl_18890 scaffold_17 + intron_skips_exon 7046365-7049246 asmbl_18889 // Exon Skipping and Retention # skipped_exon 7101219-7102087 (orient:+) max_ev_support = 2 # retained_exon 7101487-7101709 (orient:+) max_ev_support = 2 scaffold_17 + retained_exons 7101487-7101709 asmbl_18895 scaffold_17 + intron_skips_exon 7101219-7102087 asmbl_18894 // Retained and Spliced Intron # retained_intron 7671529-7672234 (orient:+) max_ev_support = 2 # spliced_intron 7671529-7672234 (orient:+) max_ev_support = 2 scaffold_17 + intron 7671529-7672234 asmbl_18917 scaffold_17 + retained_intron 7671529-7672234 asmbl_18918 // Retained and Spliced Intron # retained_intron 7850236-7850403 (orient:+) max_ev_support = 2 # spliced_intron 7850236-7850403 (orient:+) max_ev_support = 1 scaffold_17 + intron 7850236-7850403 asmbl_18923,asmbl_18924,asmbl_18925 scaffold_17 + retained_intron 7850236-7850403 asmbl_18922 // Exon Skipping and Retention # skipped_exon 7849232-7849831 (orient:+) max_ev_support = 1 # retained_exon 7849410-7849473 (orient:+) max_ev_support = 1 scaffold_17 + retained_exons 7849410-7849473 asmbl_18924 scaffold_17 + intron_skips_exon 7849232-7849831 asmbl_18923 // Exon Skipping and Retention # skipped_exon 7849474-7850188 (orient:+) max_ev_support = 1 # retained_exon 7849832-7849895 (orient:+) max_ev_support = 1 scaffold_17 + retained_exons 7849832-7849895 asmbl_18924 scaffold_17 + intron_skips_exon 7849474-7850188 asmbl_18925 // Retained and Spliced Intron # retained_intron 8158916-8159004 (orient:+) max_ev_support = 1 # spliced_intron 8158916-8159004 (orient:+) max_ev_support = 1 scaffold_17 + intron 8158916-8159004 asmbl_18937,asmbl_18938,asmbl_18940 scaffold_17 + retained_intron 8158916-8159004 asmbl_18939 // Retained and Spliced Intron # retained_intron 8221394-8221539 (orient:+) max_ev_support = 1 # spliced_intron 8221394-8221539 (orient:+) max_ev_support = 1 scaffold_17 + intron 8221394-8221539 asmbl_18954,asmbl_18955,asmbl_18956 scaffold_17 + retained_intron 8221394-8221539 asmbl_18953 // Exon Skipping and Retention # skipped_exon 8220293-8221539 (orient:+) max_ev_support = 2 # retained_exon 8221255-8221393 (orient:+) max_ev_support = 1 scaffold_17 + retained_exons 8221255-8221393 asmbl_18955,asmbl_18956 scaffold_17 + intron_skips_exon 8220293-8221539 asmbl_18947,asmbl_18952,asmbl_18957,asmbl_18958 // Retained and Spliced Intron # retained_intron 8317665-8317809 (orient:+) max_ev_support = 2 # spliced_intron 8317665-8317809 (orient:+) max_ev_support = 2 scaffold_17 + intron 8317665-8317809 asmbl_18965,asmbl_18967,asmbl_18968,asmbl_18969,asmbl_18971,asmbl_18972 scaffold_17 + retained_intron 8317665-8317809 asmbl_18964,asmbl_18966,asmbl_18973 // Retained and Spliced Intron # retained_intron 8319306-8319398 (orient:+) max_ev_support = 2 # spliced_intron 8319306-8319398 (orient:+) max_ev_support = 2 scaffold_17 + intron 8319306-8319398 asmbl_18964,asmbl_18965,asmbl_18966,asmbl_18967,asmbl_18968,asmbl_18969,asmbl_18971,asmbl_18972,asmbl_18973 scaffold_17 + retained_intron 8319306-8319398 asmbl_18970 // Retained and Spliced Intron # retained_intron 8318266-8318617 (orient:+) max_ev_support = 1 # spliced_intron 8318266-8318617 (orient:+) max_ev_support = 2 scaffold_17 + intron 8318266-8318617 asmbl_18964,asmbl_18965,asmbl_18967,asmbl_18968 scaffold_17 + retained_intron 8318266-8318617 asmbl_18972,asmbl_18973 // Retained and Spliced Intron # retained_intron 8318266-8318623 (orient:+) max_ev_support = 1 # spliced_intron 8318266-8318623 (orient:+) max_ev_support = 1 scaffold_17 + intron 8318266-8318623 asmbl_18969 scaffold_17 + retained_intron 8318266-8318623 asmbl_18972,asmbl_18973 // Retained and Spliced Intron # retained_intron 8318412-8318617 (orient:+) max_ev_support = 1 # spliced_intron 8318412-8318617 (orient:+) max_ev_support = 2 scaffold_17 + intron 8318412-8318617 asmbl_18966,asmbl_18971 scaffold_17 + retained_intron 8318412-8318617 asmbl_18972,asmbl_18973 // Retained and Spliced Intron # retained_intron 8321556-8321624 (orient:+) max_ev_support = 1 # spliced_intron 8321556-8321624 (orient:+) max_ev_support = 2 scaffold_17 + intron 8321556-8321624 asmbl_18974 scaffold_17 + retained_intron 8321556-8321624 asmbl_18976 // Retained and Spliced Intron # retained_intron 8355294-8355515 (orient:+) max_ev_support = 3 # spliced_intron 8355294-8355515 (orient:+) max_ev_support = 2 scaffold_17 + intron 8355294-8355515 asmbl_18988 scaffold_17 + retained_intron 8355294-8355515 asmbl_18987 // Exon Skipping and Retention # skipped_exon 8355060-8355515 (orient:+) max_ev_support = 3 # retained_exon 8355208-8355293 (orient:+) max_ev_support = 2 scaffold_17 + retained_exons 8355208-8355293 asmbl_18988 scaffold_17 + intron_skips_exon 8355060-8355515 asmbl_18986 // Retained and Spliced Intron # retained_intron 8540373-8540456 (orient:+) max_ev_support = 2 # spliced_intron 8540373-8540456 (orient:+) max_ev_support = 1 scaffold_17 + intron 8540373-8540456 asmbl_18993 scaffold_17 + retained_intron 8540373-8540456 asmbl_18992 // Exon Skipping and Retention # skipped_exon 8541916-8543124 (orient:+) max_ev_support = 1 # retained_exon 8542325-8542348 (orient:+) max_ev_support = 2 scaffold_17 + retained_exons 8542325-8542348 asmbl_18992,asmbl_18993 scaffold_17 + intron_skips_exon 8541916-8543124 asmbl_18994 // Exon Skipping and Retention # skipped_exon 8599879-8600656 (orient:+) max_ev_support = 1 # retained_exon 8600002-8600091 (orient:+) max_ev_support = 2 scaffold_17 + retained_exons 8600002-8600091 asmbl_19000 scaffold_17 + intron_skips_exon 8599879-8600656 asmbl_19002 // Exon Skipping and Retention # skipped_exon 8611499-8614310 (orient:+) max_ev_support = 1 # retained_exon 8613560-8613604 (orient:+) max_ev_support = 3 scaffold_17 + retained_exons 8613560-8613604 asmbl_19003,asmbl_19004,asmbl_19005 scaffold_17 + intron_skips_exon 8611499-8614310 asmbl_19006,asmbl_19007 // Retained and Spliced Intron # retained_intron 8626201-8626531 (orient:+) max_ev_support = 3 # spliced_intron 8626201-8626531 (orient:+) max_ev_support = 3 scaffold_17 + intron 8626201-8626531 asmbl_19009,asmbl_19011 scaffold_17 + retained_intron 8626201-8626531 asmbl_19010 // Retained and Spliced Intron # retained_intron 8626666-8626834 (orient:+) max_ev_support = 2 # spliced_intron 8626666-8626834 (orient:+) max_ev_support = 3 scaffold_17 + intron 8626666-8626834 asmbl_19009 scaffold_17 + retained_intron 8626666-8626834 asmbl_19010,asmbl_19011 // Retained and Spliced Intron # retained_intron 8626956-8627047 (orient:+) max_ev_support = 2 # spliced_intron 8626956-8627047 (orient:+) max_ev_support = 3 scaffold_17 + intron 8626956-8627047 asmbl_19009 scaffold_17 + retained_intron 8626956-8627047 asmbl_19010,asmbl_19011 // Retained and Spliced Intron # retained_intron 8731691-8732397 (orient:+) max_ev_support = 2 # spliced_intron 8731691-8732397 (orient:+) max_ev_support = 2 scaffold_17 + intron 8731691-8732397 asmbl_19021 scaffold_17 + retained_intron 8731691-8732397 asmbl_19020 // Retained and Spliced Intron # retained_intron 8845886-8846064 (orient:+) max_ev_support = 2 # spliced_intron 8845886-8846064 (orient:+) max_ev_support = 2 scaffold_17 + intron 8845886-8846064 asmbl_19023 scaffold_17 + retained_intron 8845886-8846064 asmbl_19024,asmbl_19025,asmbl_19027,asmbl_19028 // Retained and Spliced Intron # retained_intron 8846095-8846264 (orient:+) max_ev_support = 2 # spliced_intron 8846095-8846264 (orient:+) max_ev_support = 2 scaffold_17 + intron 8846095-8846264 asmbl_19023,asmbl_19025,asmbl_19028 scaffold_17 + retained_intron 8846095-8846264 asmbl_19024,asmbl_19027 // Retained and Spliced Intron # retained_intron 8848586-8849302 (orient:+) max_ev_support = 2 # spliced_intron 8848586-8849302 (orient:+) max_ev_support = 1 scaffold_17 + intron 8848586-8849302 asmbl_19030 scaffold_17 + retained_intron 8848586-8849302 asmbl_19029 // Retained and Spliced Intron # retained_intron 8875826-8875983 (orient:+) max_ev_support = 2 # spliced_intron 8875826-8875983 (orient:+) max_ev_support = 2 scaffold_17 + intron 8875826-8875983 asmbl_19038 scaffold_17 + retained_intron 8875826-8875983 asmbl_19037 // Retained and Spliced Intron # retained_intron 8880820-8880901 (orient:+) max_ev_support = 2 # spliced_intron 8880820-8880901 (orient:+) max_ev_support = 2 scaffold_17 + intron 8880820-8880901 asmbl_19040 scaffold_17 + retained_intron 8880820-8880901 asmbl_19042 // Retained and Spliced Intron # retained_intron 8951018-8951264 (orient:+) max_ev_support = 1 # spliced_intron 8951018-8951264 (orient:+) max_ev_support = 2 scaffold_17 + intron 8951018-8951264 asmbl_19048 scaffold_17 + retained_intron 8951018-8951264 asmbl_19049 // Retained and Spliced Intron # retained_intron 8951374-8951464 (orient:+) max_ev_support = 1 # spliced_intron 8951374-8951464 (orient:+) max_ev_support = 2 scaffold_17 + intron 8951374-8951464 asmbl_19048 scaffold_17 + retained_intron 8951374-8951464 asmbl_19049 // Retained and Spliced Intron # retained_intron 8951543-8951643 (orient:+) max_ev_support = 1 # spliced_intron 8951543-8951643 (orient:+) max_ev_support = 2 scaffold_17 + intron 8951543-8951643 asmbl_19048 scaffold_17 + retained_intron 8951543-8951643 asmbl_19049 // Exon Skipping and Retention # skipped_exon 9004638-9006457 (orient:+) max_ev_support = 1 # retained_exon 9005703-9005778 (orient:+) max_ev_support = 2 scaffold_17 + retained_exons 9005703-9005778 asmbl_19054,asmbl_19055 scaffold_17 + intron_skips_exon 9004638-9006457 asmbl_19056,asmbl_19058 // Exon Skipping and Retention # skipped_exon 9004119-9005702 (orient:+) max_ev_support = 2 # retained_exon 9004562-9004637 (orient:+) max_ev_support = 1 scaffold_17 + retained_exons 9004562-9004637 asmbl_19056,asmbl_19058 scaffold_17 + intron_skips_exon 9004119-9005702 asmbl_19054,asmbl_19055 // Retained and Spliced Intron # retained_intron 9004119-9004561 (orient:+) max_ev_support = 1 # spliced_intron 9004119-9004561 (orient:+) max_ev_support = 1 scaffold_17 + intron 9004119-9004561 asmbl_19056,asmbl_19058 scaffold_17 + retained_intron 9004119-9004561 asmbl_19057 // Retained and Spliced Intron # retained_intron 9004119-9005702 (orient:+) max_ev_support = 1 # spliced_intron 9004119-9005702 (orient:+) max_ev_support = 2 scaffold_17 + intron 9004119-9005702 asmbl_19054,asmbl_19055 scaffold_17 + retained_intron 9004119-9005702 asmbl_19057 // Retained and Spliced Intron # retained_intron 9004638-9006457 (orient:+) max_ev_support = 1 # spliced_intron 9004638-9006457 (orient:+) max_ev_support = 1 scaffold_17 + intron 9004638-9006457 asmbl_19056,asmbl_19058 scaffold_17 + retained_intron 9004638-9006457 asmbl_19057 // Retained and Spliced Intron # retained_intron 9005779-9006436 (orient:+) max_ev_support = 1 # spliced_intron 9005779-9006436 (orient:+) max_ev_support = 2 scaffold_17 + intron 9005779-9006436 asmbl_19054,asmbl_19055 scaffold_17 + retained_intron 9005779-9006436 asmbl_19057 // Retained and Spliced Intron # retained_intron 9006765-9006969 (orient:+) max_ev_support = 1 # spliced_intron 9006765-9006969 (orient:+) max_ev_support = 2 scaffold_17 + intron 9006765-9006969 asmbl_19055,asmbl_19058 scaffold_17 + retained_intron 9006765-9006969 asmbl_19057 // Retained and Spliced Intron # retained_intron 9007049-9007385 (orient:+) max_ev_support = 1 # spliced_intron 9007049-9007385 (orient:+) max_ev_support = 2 scaffold_17 + intron 9007049-9007385 asmbl_19055,asmbl_19058 scaffold_17 + retained_intron 9007049-9007385 asmbl_19057 // Retained and Spliced Intron # retained_intron 9428864-9428984 (orient:+) max_ev_support = 2 # spliced_intron 9428864-9428984 (orient:+) max_ev_support = 2 scaffold_17 + intron 9428864-9428984 asmbl_19081 scaffold_17 + retained_intron 9428864-9428984 asmbl_19080 // Retained and Spliced Intron # retained_intron 9453670-9453880 (orient:+) max_ev_support = 3 # spliced_intron 9453670-9453880 (orient:+) max_ev_support = 3 scaffold_17 + intron 9453670-9453880 asmbl_19084,asmbl_19085 scaffold_17 + retained_intron 9453670-9453880 asmbl_19082,asmbl_19088 // Retained and Spliced Intron # retained_intron 9447461-9447558 (orient:+) max_ev_support = 2 # spliced_intron 9447461-9447558 (orient:+) max_ev_support = 3 scaffold_17 + intron 9447461-9447558 asmbl_19083,asmbl_19086 scaffold_17 + retained_intron 9447461-9447558 asmbl_19087 // Exon Skipping and Retention # skipped_exon 9487827-9488129 (orient:+) max_ev_support = 2 # retained_exon 9487955-9488033 (orient:+) max_ev_support = 2 scaffold_17 + retained_exons 9487955-9488033 asmbl_19091,asmbl_19093,asmbl_19097 scaffold_17 + intron_skips_exon 9487827-9488129 asmbl_19092,asmbl_19096 // Exon Skipping and Retention # skipped_exon 9529492-9531393 (orient:+) max_ev_support = 3 # retained_exon 9530712-9531028 (orient:+) max_ev_support = 3 scaffold_17 + retained_exons 9530712-9531028 asmbl_19102 scaffold_17 + intron_skips_exon 9529492-9531393 asmbl_19103,asmbl_19106,asmbl_19107,asmbl_19108,asmbl_19109 // Exon Skipping and Retention # skipped_exon 9531820-9532877 (orient:+) max_ev_support = 2 # retained_exon 9532392-9532451 (orient:+) max_ev_support = 3 scaffold_17 + retained_exons 9532392-9532451 asmbl_19102,asmbl_19103,asmbl_19107 scaffold_17 + intron_skips_exon 9531820-9532877 asmbl_19105,asmbl_19106 // Retained and Spliced Intron # retained_intron 9531029-9531393 (orient:+) max_ev_support = 2 # spliced_intron 9531029-9531393 (orient:+) max_ev_support = 3 scaffold_17 + intron 9531029-9531393 asmbl_19102 scaffold_17 + retained_intron 9531029-9531393 asmbl_19105,asmbl_19110 // Retained and Spliced Intron # retained_intron 9533790-9533896 (orient:+) max_ev_support = 2 # spliced_intron 9533790-9533896 (orient:+) max_ev_support = 3 scaffold_17 + intron 9533790-9533896 asmbl_19102,asmbl_19103,asmbl_19104,asmbl_19105,asmbl_19109 scaffold_17 + retained_intron 9533790-9533896 asmbl_19107,asmbl_19108 // Retained and Spliced Intron # retained_intron 9533968-9534048 (orient:+) max_ev_support = 2 # spliced_intron 9533968-9534048 (orient:+) max_ev_support = 3 scaffold_17 + intron 9533968-9534048 asmbl_19102,asmbl_19103,asmbl_19104,asmbl_19105,asmbl_19109 scaffold_17 + retained_intron 9533968-9534048 asmbl_19107,asmbl_19108 // Retained and Spliced Intron # retained_intron 9531820-9532391 (orient:+) max_ev_support = 1 # spliced_intron 9531820-9532391 (orient:+) max_ev_support = 3 scaffold_17 + intron 9531820-9532391 asmbl_19102,asmbl_19103,asmbl_19107 scaffold_17 + retained_intron 9531820-9532391 asmbl_19108,asmbl_19109 // Retained and Spliced Intron # retained_intron 9531820-9532877 (orient:+) max_ev_support = 1 # spliced_intron 9531820-9532877 (orient:+) max_ev_support = 2 scaffold_17 + intron 9531820-9532877 asmbl_19105,asmbl_19106 scaffold_17 + retained_intron 9531820-9532877 asmbl_19108,asmbl_19109 // Retained and Spliced Intron # retained_intron 9532452-9532877 (orient:+) max_ev_support = 1 # spliced_intron 9532452-9532877 (orient:+) max_ev_support = 3 scaffold_17 + intron 9532452-9532877 asmbl_19102,asmbl_19103,asmbl_19107 scaffold_17 + retained_intron 9532452-9532877 asmbl_19108,asmbl_19109 // Exon Skipping and Retention # skipped_exon 9570215-9571436 (orient:+) max_ev_support = 2 # retained_exon 9570412-9570707 (orient:+) max_ev_support = 2 scaffold_17 + retained_exons 9570412-9570470,9570628-9570707 asmbl_19117 scaffold_17 + intron_skips_exon 9570215-9571436 asmbl_19118 // Retained and Spliced Intron # retained_intron 9942619-9942696 (orient:+) max_ev_support = 1 # spliced_intron 9942619-9942696 (orient:+) max_ev_support = 2 scaffold_17 + intron 9942619-9942696 asmbl_19128,asmbl_19129,asmbl_19130 scaffold_17 + retained_intron 9942619-9942696 asmbl_19132,asmbl_19133 // Exon Skipping and Retention # skipped_exon 9971511-9974021 (orient:+) max_ev_support = 1 # retained_exon 9971884-9973666 (orient:+) max_ev_support = 1 scaffold_17 + retained_exons 9971884-9972036,9973649-9973666 asmbl_19142,asmbl_19145 scaffold_17 + intron_skips_exon 9971511-9974021 asmbl_19144 // Exon Skipping and Retention # skipped_exon 9972037-9974021 (orient:+) max_ev_support = 1 # retained_exon 9973649-9973666 (orient:+) max_ev_support = 1 scaffold_17 + retained_exons 9973649-9973666 asmbl_19142,asmbl_19145 scaffold_17 + intron_skips_exon 9972037-9974021 asmbl_19143 // Retained and Spliced Intron # retained_intron 10048773-10050113 (orient:+) max_ev_support = 5 # spliced_intron 10048773-10050113 (orient:+) max_ev_support = 1 scaffold_17 + intron 10048773-10050113 asmbl_19163 scaffold_17 + retained_intron 10048773-10050113 asmbl_19160 // Retained and Spliced Intron # retained_intron 10048773-10050204 (orient:+) max_ev_support = 5 # spliced_intron 10048773-10050204 (orient:+) max_ev_support = 2 scaffold_17 + intron 10048773-10050204 asmbl_19161,asmbl_19164 scaffold_17 + retained_intron 10048773-10050204 asmbl_19160 // Retained and Spliced Intron # retained_intron 10050035-10050204 (orient:+) max_ev_support = 2 # spliced_intron 10050035-10050204 (orient:+) max_ev_support = 1 scaffold_17 + intron 10050035-10050204 asmbl_19165 scaffold_17 + retained_intron 10050035-10050204 asmbl_19160,asmbl_19162 // Retained and Spliced Intron # retained_intron 10050378-10050855 (orient:+) max_ev_support = 2 # spliced_intron 10050378-10050855 (orient:+) max_ev_support = 2 scaffold_17 + intron 10050378-10050855 asmbl_19160,asmbl_19161 scaffold_17 + retained_intron 10050378-10050855 asmbl_19162,asmbl_19164,asmbl_19165 // Retained and Spliced Intron # retained_intron 10050958-10051155 (orient:+) max_ev_support = 2 # spliced_intron 10050958-10051155 (orient:+) max_ev_support = 2 scaffold_17 + intron 10050958-10051155 asmbl_19160,asmbl_19161 scaffold_17 + retained_intron 10050958-10051155 asmbl_19162,asmbl_19164,asmbl_19165 // Retained and Spliced Intron # retained_intron 10097780-10097808 (orient:+) max_ev_support = 3 # spliced_intron 10097780-10097808 (orient:+) max_ev_support = 1 scaffold_17 + intron 10097780-10097808 asmbl_19177 scaffold_17 + retained_intron 10097780-10097808 asmbl_19176 // Retained and Spliced Intron # retained_intron 11508780-11509171 (orient:+) max_ev_support = 2 # spliced_intron 11508780-11509171 (orient:+) max_ev_support = 2 scaffold_17 + intron 11508780-11509171 asmbl_19228 scaffold_17 + retained_intron 11508780-11509171 asmbl_19230 // Retained and Spliced Intron # retained_intron 11568197-11568238 (orient:+) max_ev_support = 1 # spliced_intron 11568197-11568238 (orient:+) max_ev_support = 1 scaffold_17 + intron 11568197-11568238 asmbl_19236,asmbl_19239 scaffold_17 + retained_intron 11568197-11568238 asmbl_19237,asmbl_19238 // Retained and Spliced Intron # retained_intron 12090439-12090468 (orient:+) max_ev_support = 1 # spliced_intron 12090439-12090468 (orient:+) max_ev_support = 1 scaffold_17 + intron 12090439-12090468 asmbl_19257 scaffold_17 + retained_intron 12090439-12090468 asmbl_19258 // Exon Skipping and Retention # skipped_exon 12115337-12116491 (orient:+) max_ev_support = 2 # retained_exon 12116137-12116225 (orient:+) max_ev_support = 2 scaffold_17 + retained_exons 12116137-12116225 asmbl_19261 scaffold_17 + intron_skips_exon 12115337-12116491 asmbl_19260 // Retained and Spliced Intron # retained_intron 12142249-12142794 (orient:+) max_ev_support = 3 # spliced_intron 12142249-12142794 (orient:+) max_ev_support = 2 scaffold_17 + intron 12142249-12142794 asmbl_19267 scaffold_17 + retained_intron 12142249-12142794 asmbl_19266 // Exon Skipping and Retention # skipped_exon 12169998-12172330 (orient:+) max_ev_support = 2 # retained_exon 12170856-12170949 (orient:+) max_ev_support = 3 scaffold_17 + retained_exons 12170856-12170949 asmbl_19269 scaffold_17 + intron_skips_exon 12169998-12172330 asmbl_19270 // Retained and Spliced Intron # retained_intron 12187281-12187379 (orient:+) max_ev_support = 2 # spliced_intron 12187281-12187379 (orient:+) max_ev_support = 2 scaffold_17 + intron 12187281-12187379 asmbl_19275 scaffold_17 + retained_intron 12187281-12187379 asmbl_19274 // Exon Skipping and Retention # skipped_exon 12198250-12200487 (orient:+) max_ev_support = 2 # retained_exon 12199388-12199478 (orient:+) max_ev_support = 2 scaffold_17 + retained_exons 12199388-12199478 asmbl_19279 scaffold_17 + intron_skips_exon 12198250-12200487 asmbl_19278 // Retained and Spliced Intron # retained_intron 13048788-13049071 (orient:+) max_ev_support = 2 # spliced_intron 13048788-13049071 (orient:+) max_ev_support = 2 scaffold_17 + intron 13048788-13049071 asmbl_19306 scaffold_17 + retained_intron 13048788-13049071 asmbl_19307 // Exon Skipping and Retention # skipped_exon 13087139-13087807 (orient:+) max_ev_support = 2 # retained_exon 13087497-13087527 (orient:+) max_ev_support = 3 scaffold_17 + retained_exons 13087497-13087527 asmbl_19316 scaffold_17 + intron_skips_exon 13087139-13087807 asmbl_19317 // Retained and Spliced Intron # retained_intron 13957425-13957742 (orient:+) max_ev_support = 2 # spliced_intron 13957425-13957742 (orient:+) max_ev_support = 5 scaffold_17 + intron 13957425-13957742 asmbl_19366 scaffold_17 + retained_intron 13957425-13957742 asmbl_19367 // Retained and Spliced Intron # retained_intron 14040941-14041125 (orient:+) max_ev_support = 2 # spliced_intron 14040941-14041125 (orient:+) max_ev_support = 1 scaffold_17 + intron 14040941-14041125 asmbl_19380 scaffold_17 + retained_intron 14040941-14041125 asmbl_19379 // Retained and Spliced Intron # retained_intron 14040943-14041125 (orient:+) max_ev_support = 2 # spliced_intron 14040943-14041125 (orient:+) max_ev_support = 1 scaffold_17 + intron 14040943-14041125 asmbl_19381 scaffold_17 + retained_intron 14040943-14041125 asmbl_19379 // Retained and Spliced Intron # retained_intron 14380546-14380566 (orient:+) max_ev_support = 2 # spliced_intron 14380546-14380566 (orient:+) max_ev_support = 1 scaffold_17 + intron 14380546-14380566 asmbl_19401 scaffold_17 + retained_intron 14380546-14380566 asmbl_19400 // Retained and Spliced Intron # retained_intron 14546213-14546320 (orient:+) max_ev_support = 3 # spliced_intron 14546213-14546320 (orient:+) max_ev_support = 1 scaffold_17 + intron 14546213-14546320 asmbl_19415 scaffold_17 + retained_intron 14546213-14546320 asmbl_19413 // Retained and Spliced Intron # retained_intron 14546213-14546347 (orient:+) max_ev_support = 3 # spliced_intron 14546213-14546347 (orient:+) max_ev_support = 1 scaffold_17 + intron 14546213-14546347 asmbl_19414 scaffold_17 + retained_intron 14546213-14546347 asmbl_19413 // Retained and Spliced Intron # retained_intron 14633326-14633465 (orient:+) max_ev_support = 1 # spliced_intron 14633326-14633465 (orient:+) max_ev_support = 1 scaffold_17 + intron 14633326-14633465 asmbl_19420 scaffold_17 + retained_intron 14633326-14633465 asmbl_19418 // Retained and Spliced Intron # retained_intron 14633346-14633405 (orient:+) max_ev_support = 1 # spliced_intron 14633346-14633405 (orient:+) max_ev_support = 1 scaffold_17 + intron 14633346-14633405 asmbl_19416 scaffold_17 + retained_intron 14633346-14633405 asmbl_19418 // Retained and Spliced Intron # retained_intron 14633366-14633405 (orient:+) max_ev_support = 1 # spliced_intron 14633366-14633405 (orient:+) max_ev_support = 1 scaffold_17 + intron 14633366-14633405 asmbl_19417 scaffold_17 + retained_intron 14633366-14633405 asmbl_19418 // Retained and Spliced Intron # retained_intron 14729874-14729921 (orient:+) max_ev_support = 3 # spliced_intron 14729874-14729921 (orient:+) max_ev_support = 1 scaffold_17 + intron 14729874-14729921 asmbl_19424 scaffold_17 + retained_intron 14729874-14729921 asmbl_19423 // Retained and Spliced Intron # retained_intron 14874491-14874578 (orient:+) max_ev_support = 1 # spliced_intron 14874491-14874578 (orient:+) max_ev_support = 1 scaffold_17 + intron 14874491-14874578 asmbl_19430 scaffold_17 + retained_intron 14874491-14874578 asmbl_19431 // Retained and Spliced Intron # retained_intron 236302-236439 (orient:-) max_ev_support = 2 # spliced_intron 236302-236439 (orient:-) max_ev_support = 2 scaffold_18 - intron 236302-236439 asmbl_19568,asmbl_19569 scaffold_18 - retained_intron 236302-236439 asmbl_19567,asmbl_19570 // Exon Skipping and Retention # skipped_exon 246105-247221 (orient:-) max_ev_support = 2 # retained_exon 246220-246574 (orient:-) max_ev_support = 2 scaffold_18 - retained_exons 246220-246574 asmbl_19572 scaffold_18 - intron_skips_exon 246105-247221 asmbl_19573 // Retained and Spliced Intron # retained_intron 372033-372122 (orient:-) max_ev_support = 1 # spliced_intron 372033-372122 (orient:-) max_ev_support = 2 scaffold_18 - intron 372033-372122 asmbl_19575,asmbl_19583,asmbl_19584 scaffold_18 - retained_intron 372033-372122 asmbl_19581 // Retained and Spliced Intron # retained_intron 370096-370294 (orient:-) max_ev_support = 1 # spliced_intron 370096-370294 (orient:-) max_ev_support = 2 scaffold_18 - intron 370096-370294 asmbl_19575,asmbl_19581,asmbl_19582,asmbl_19584 scaffold_18 - retained_intron 370096-370294 asmbl_19583 // Retained and Spliced Intron # retained_intron 377007-377116 (orient:-) max_ev_support = 1 # spliced_intron 377007-377116 (orient:-) max_ev_support = 2 scaffold_18 - intron 377007-377116 asmbl_19575,asmbl_19583 scaffold_18 - retained_intron 377007-377116 asmbl_19584 // Retained and Spliced Intron # retained_intron 839307-839434 (orient:-) max_ev_support = 1 # spliced_intron 839307-839434 (orient:-) max_ev_support = 1 scaffold_18 - intron 839307-839434 asmbl_19602,asmbl_19603 scaffold_18 - retained_intron 839307-839434 asmbl_19601 // Retained and Spliced Intron # retained_intron 835426-835527 (orient:-) max_ev_support = 1 # spliced_intron 835426-835527 (orient:-) max_ev_support = 1 scaffold_18 - intron 835426-835527 asmbl_19598,asmbl_19601,asmbl_19603 scaffold_18 - retained_intron 835426-835527 asmbl_19602 // Retained and Spliced Intron # retained_intron 852034-852150 (orient:-) max_ev_support = 1 # spliced_intron 852034-852150 (orient:-) max_ev_support = 2 scaffold_18 - intron 852034-852150 asmbl_19604,asmbl_19606 scaffold_18 - retained_intron 852034-852150 asmbl_19605 // Retained and Spliced Intron # retained_intron 1382455-1382684 (orient:-) max_ev_support = 2 # spliced_intron 1382455-1382684 (orient:-) max_ev_support = 2 scaffold_18 - intron 1382455-1382684 asmbl_19613 scaffold_18 - retained_intron 1382455-1382684 asmbl_19614 // Retained and Spliced Intron # retained_intron 1382022-1382102 (orient:-) max_ev_support = 1 # spliced_intron 1382022-1382102 (orient:-) max_ev_support = 2 scaffold_18 - intron 1382022-1382102 asmbl_19613,asmbl_19614 scaffold_18 - retained_intron 1382022-1382102 asmbl_19615 // Retained and Spliced Intron # retained_intron 1624835-1624863 (orient:-) max_ev_support = 1 # spliced_intron 1624835-1624863 (orient:-) max_ev_support = 1 scaffold_18 - intron 1624835-1624863 asmbl_19628 scaffold_18 - retained_intron 1624835-1624863 asmbl_19629 // Exon Skipping and Retention # skipped_exon 1753434-1754444 (orient:-) max_ev_support = 1 # retained_exon 1754139-1754256 (orient:-) max_ev_support = 2 scaffold_18 - retained_exons 1754139-1754256 asmbl_19642,asmbl_19644 scaffold_18 - intron_skips_exon 1753434-1754444 asmbl_19643 // Retained and Spliced Intron # retained_intron 1862478-1862581 (orient:-) max_ev_support = 3 # spliced_intron 1862478-1862581 (orient:-) max_ev_support = 2 scaffold_18 - intron 1862478-1862581 asmbl_19649,asmbl_19650,asmbl_19651 scaffold_18 - retained_intron 1862478-1862581 asmbl_19648 // Retained and Spliced Intron # retained_intron 1862675-1862768 (orient:-) max_ev_support = 1 # spliced_intron 1862675-1862768 (orient:-) max_ev_support = 2 scaffold_18 - intron 1862675-1862768 asmbl_19648,asmbl_19649 scaffold_18 - retained_intron 1862675-1862768 asmbl_19650,asmbl_19651 // Retained and Spliced Intron # retained_intron 1893653-1894712 (orient:-) max_ev_support = 3 # spliced_intron 1893653-1894712 (orient:-) max_ev_support = 2 scaffold_18 - intron 1893653-1894712 asmbl_19655,asmbl_19658,asmbl_19660,asmbl_19661,asmbl_19662,asmbl_19665 scaffold_18 - retained_intron 1893653-1894712 asmbl_19653,asmbl_19657,asmbl_19659 // Retained and Spliced Intron # retained_intron 1895347-1896928 (orient:-) max_ev_support = 2 # spliced_intron 1895347-1896928 (orient:-) max_ev_support = 2 scaffold_18 - intron 1895347-1896928 asmbl_19660 scaffold_18 - retained_intron 1895347-1896928 asmbl_19653,asmbl_19655,asmbl_19656,asmbl_19657,asmbl_19658,asmbl_19661,asmbl_19662,asmbl_19663,asmbl_19665 // Retained and Spliced Intron # retained_intron 1901421-1904370 (orient:-) max_ev_support = 4 # spliced_intron 1901421-1904370 (orient:-) max_ev_support = 2 scaffold_18 - intron 1901421-1904370 asmbl_19655,asmbl_19656,asmbl_19658,asmbl_19660,asmbl_19663 scaffold_18 - retained_intron 1901421-1904370 asmbl_19653 // Retained and Spliced Intron # retained_intron 1903420-1904370 (orient:-) max_ev_support = 4 # spliced_intron 1903420-1904370 (orient:-) max_ev_support = 1 scaffold_18 - intron 1903420-1904370 asmbl_19659,asmbl_19661,asmbl_19665 scaffold_18 - retained_intron 1903420-1904370 asmbl_19653,asmbl_19654 // Retained and Spliced Intron # retained_intron 1904443-1905350 (orient:-) max_ev_support = 4 # spliced_intron 1904443-1905350 (orient:-) max_ev_support = 2 scaffold_18 - intron 1904443-1905350 asmbl_19654,asmbl_19659,asmbl_19660,asmbl_19661,asmbl_19663,asmbl_19665 scaffold_18 - retained_intron 1904443-1905350 asmbl_19653,asmbl_19656 // Exon Skipping and Retention # skipped_exon 1886374-1887983 (orient:-) max_ev_support = 1 # retained_exon 1887353-1887391 (orient:-) max_ev_support = 1 scaffold_18 - retained_exons 1887353-1887391 asmbl_19655,asmbl_19656,asmbl_19663,asmbl_19664,asmbl_19665 scaffold_18 - intron_skips_exon 1886374-1887983 asmbl_19653,asmbl_19657,asmbl_19658,asmbl_19661,asmbl_19662 // Exon Skipping and Retention # skipped_exon 1893284-1894703 (orient:-) max_ev_support = 1 # retained_exon 1893644-1893652 (orient:-) max_ev_support = 2 scaffold_18 - retained_exons 1893644-1893652 asmbl_19655,asmbl_19658,asmbl_19660,asmbl_19661,asmbl_19662,asmbl_19665 scaffold_18 - intron_skips_exon 1893284-1894703 asmbl_19656,asmbl_19663,asmbl_19664 // Retained and Spliced Intron # retained_intron 1899014-1899766 (orient:-) max_ev_support = 2 # spliced_intron 1899014-1899766 (orient:-) max_ev_support = 1 scaffold_18 - intron 1899014-1899766 asmbl_19653,asmbl_19659,asmbl_19660,asmbl_19661,asmbl_19663,asmbl_19664,asmbl_19665 scaffold_18 - retained_intron 1899014-1899766 asmbl_19655,asmbl_19656,asmbl_19657,asmbl_19658,asmbl_19662 // Retained and Spliced Intron # retained_intron 1895347-1897477 (orient:-) max_ev_support = 1 # spliced_intron 1895347-1897477 (orient:-) max_ev_support = 1 scaffold_18 - intron 1895347-1897477 asmbl_19659,asmbl_19664 scaffold_18 - retained_intron 1895347-1897477 asmbl_19656,asmbl_19658,asmbl_19661,asmbl_19662,asmbl_19665 // Retained and Spliced Intron # retained_intron 1896938-1897477 (orient:-) max_ev_support = 1 # spliced_intron 1896938-1897477 (orient:-) max_ev_support = 2 scaffold_18 - intron 1896938-1897477 asmbl_19653,asmbl_19655,asmbl_19657,asmbl_19660,asmbl_19663 scaffold_18 - retained_intron 1896938-1897477 asmbl_19656,asmbl_19658,asmbl_19661,asmbl_19662,asmbl_19665 // Retained and Spliced Intron # retained_intron 1899809-1900625 (orient:-) max_ev_support = 1 # spliced_intron 1899809-1900625 (orient:-) max_ev_support = 2 scaffold_18 - intron 1899809-1900625 asmbl_19653,asmbl_19655,asmbl_19656,asmbl_19658,asmbl_19659,asmbl_19660,asmbl_19661,asmbl_19663,asmbl_19665 scaffold_18 - retained_intron 1899809-1900625 asmbl_19657,asmbl_19662,asmbl_19664 // Retained and Spliced Intron # retained_intron 1886374-1887352 (orient:-) max_ev_support = 1 # spliced_intron 1886374-1887352 (orient:-) max_ev_support = 1 scaffold_18 - intron 1886374-1887352 asmbl_19655,asmbl_19656,asmbl_19663,asmbl_19664,asmbl_19665 scaffold_18 - retained_intron 1886374-1887352 asmbl_19659 // Retained and Spliced Intron # retained_intron 1886374-1887983 (orient:-) max_ev_support = 1 # spliced_intron 1886374-1887983 (orient:-) max_ev_support = 1 scaffold_18 - intron 1886374-1887983 asmbl_19653,asmbl_19657,asmbl_19658,asmbl_19661,asmbl_19662 scaffold_18 - retained_intron 1886374-1887983 asmbl_19659 // Retained and Spliced Intron # retained_intron 1887392-1887983 (orient:-) max_ev_support = 1 # spliced_intron 1887392-1887983 (orient:-) max_ev_support = 1 scaffold_18 - intron 1887392-1887983 asmbl_19655,asmbl_19656,asmbl_19663,asmbl_19664,asmbl_19665 scaffold_18 - retained_intron 1887392-1887983 asmbl_19659 // Exon Skipping and Retention # skipped_exon 1895347-1897477 (orient:-) max_ev_support = 1 # retained_exon 1896929-1896937 (orient:-) max_ev_support = 2 scaffold_18 - retained_exons 1896929-1896937 asmbl_19660 scaffold_18 - intron_skips_exon 1895347-1897477 asmbl_19659,asmbl_19664 // Retained and Spliced Intron # retained_intron 1944645-1944740 (orient:-) max_ev_support = 2 # spliced_intron 1944645-1944740 (orient:-) max_ev_support = 2 scaffold_18 - intron 1944645-1944740 asmbl_19673 scaffold_18 - retained_intron 1944645-1944740 asmbl_19674 // Retained and Spliced Intron # retained_intron 2050891-2050940 (orient:-) max_ev_support = 2 # spliced_intron 2050891-2050940 (orient:-) max_ev_support = 1 scaffold_18 - intron 2050891-2050940 asmbl_19692 scaffold_18 - retained_intron 2050891-2050940 asmbl_19691 // Retained and Spliced Intron # retained_intron 2050891-2050959 (orient:-) max_ev_support = 2 # spliced_intron 2050891-2050959 (orient:-) max_ev_support = 1 scaffold_18 - intron 2050891-2050959 asmbl_19693 scaffold_18 - retained_intron 2050891-2050959 asmbl_19691 // Exon Skipping and Retention # skipped_exon 2055960-2058306 (orient:-) max_ev_support = 2 # retained_exon 2056676-2056747 (orient:-) max_ev_support = 2 scaffold_18 - retained_exons 2056676-2056747 asmbl_19697 scaffold_18 - intron_skips_exon 2055960-2058306 asmbl_19698 // Exon Skipping and Retention # skipped_exon 2087237-2087931 (orient:-) max_ev_support = 1 # retained_exon 2087503-2087627 (orient:-) max_ev_support = 2 scaffold_18 - retained_exons 2087503-2087627 asmbl_19704 scaffold_18 - intron_skips_exon 2087237-2087931 asmbl_19705 // Retained and Spliced Intron # retained_intron 2148780-2149152 (orient:-) max_ev_support = 3 # spliced_intron 2148780-2149152 (orient:-) max_ev_support = 2 scaffold_18 - intron 2148780-2149152 asmbl_19709,asmbl_19710 scaffold_18 - retained_intron 2148780-2149152 asmbl_19708 // Retained and Spliced Intron # retained_intron 2149299-2149645 (orient:-) max_ev_support = 3 # spliced_intron 2149299-2149645 (orient:-) max_ev_support = 1 scaffold_18 - intron 2149299-2149645 asmbl_19710 scaffold_18 - retained_intron 2149299-2149645 asmbl_19708,asmbl_19709 // Retained and Spliced Intron # retained_intron 2394186-2394398 (orient:-) max_ev_support = 4 # spliced_intron 2394186-2394398 (orient:-) max_ev_support = 2 scaffold_18 - intron 2394186-2394398 asmbl_19724 scaffold_18 - retained_intron 2394186-2394398 asmbl_19723 // Retained and Spliced Intron # retained_intron 2394215-2394398 (orient:-) max_ev_support = 4 # spliced_intron 2394215-2394398 (orient:-) max_ev_support = 1 scaffold_18 - intron 2394215-2394398 asmbl_19725 scaffold_18 - retained_intron 2394215-2394398 asmbl_19723 // Retained and Spliced Intron # retained_intron 2565486-2565566 (orient:-) max_ev_support = 1 # spliced_intron 2565486-2565566 (orient:-) max_ev_support = 2 scaffold_18 - intron 2565486-2565566 asmbl_19728 scaffold_18 - retained_intron 2565486-2565566 asmbl_19729 // Retained and Spliced Intron # retained_intron 2758917-2759003 (orient:-) max_ev_support = 2 # spliced_intron 2758917-2759003 (orient:-) max_ev_support = 2 scaffold_18 - intron 2758917-2759003 asmbl_19736,asmbl_19738 scaffold_18 - retained_intron 2758917-2759003 asmbl_19737,asmbl_19739 // Retained and Spliced Intron # retained_intron 2759098-2759324 (orient:-) max_ev_support = 2 # spliced_intron 2759098-2759324 (orient:-) max_ev_support = 2 scaffold_18 - intron 2759098-2759324 asmbl_19736,asmbl_19739 scaffold_18 - retained_intron 2759098-2759324 asmbl_19737,asmbl_19738 // Retained and Spliced Intron # retained_intron 2779711-2779799 (orient:-) max_ev_support = 2 # spliced_intron 2779711-2779799 (orient:-) max_ev_support = 2 scaffold_18 - intron 2779711-2779799 asmbl_19740 scaffold_18 - retained_intron 2779711-2779799 asmbl_19741 // Retained and Spliced Intron # retained_intron 3096365-3096617 (orient:-) max_ev_support = 2 # spliced_intron 3096365-3096617 (orient:-) max_ev_support = 1 scaffold_18 - intron 3096365-3096617 asmbl_19745 scaffold_18 - retained_intron 3096365-3096617 asmbl_19744 // Retained and Spliced Intron # retained_intron 3105935-3106050 (orient:-) max_ev_support = 3 # spliced_intron 3105935-3106050 (orient:-) max_ev_support = 2 scaffold_18 - intron 3105935-3106050 asmbl_19747 scaffold_18 - retained_intron 3105935-3106050 asmbl_19746 // Retained and Spliced Intron # retained_intron 3789471-3789712 (orient:-) max_ev_support = 2 # spliced_intron 3789471-3789712 (orient:-) max_ev_support = 1 scaffold_18 - intron 3789471-3789712 asmbl_19777,asmbl_19779 scaffold_18 - retained_intron 3789471-3789712 asmbl_19771,asmbl_19772,asmbl_19775,asmbl_19776,asmbl_19778 // Exon Skipping and Retention # skipped_exon 3915974-3917888 (orient:-) max_ev_support = 1 # retained_exon 3917647-3917798 (orient:-) max_ev_support = 1 scaffold_18 - retained_exons 3917647-3917798 asmbl_19782 scaffold_18 - intron_skips_exon 3915974-3917888 asmbl_19786 // Exon Skipping and Retention # skipped_exon 3916195-3918126 (orient:-) max_ev_support = 1 # retained_exon 3917647-3918019 (orient:-) max_ev_support = 1 scaffold_18 - retained_exons 3917647-3917798,3917889-3918019 asmbl_19782 scaffold_18 - intron_skips_exon 3916195-3918126 asmbl_19783 // Exon Skipping and Retention # skipped_exon 3916387-3918363 (orient:-) max_ev_support = 1 # retained_exon 3917647-3918211 (orient:-) max_ev_support = 1 scaffold_18 - retained_exons 3917647-3917798,3917889-3918019,3918127-3918211 asmbl_19782 scaffold_18 - intron_skips_exon 3916387-3918363 asmbl_19785 // Exon Skipping and Retention # skipped_exon 3916636-3918640 (orient:-) max_ev_support = 1 # retained_exon 3917647-3918460 (orient:-) max_ev_support = 1 scaffold_18 - retained_exons 3917647-3917798,3917889-3918019,3918127-3918211,3918364-3918460 asmbl_19782 scaffold_18 - intron_skips_exon 3916636-3918640 asmbl_19784 // Exon Skipping and Retention # skipped_exon 3915622-3917646 (orient:-) max_ev_support = 1 # retained_exon 3915822-3916194 (orient:-) max_ev_support = 1 scaffold_18 - retained_exons 3915822-3915973,3916064-3916194 asmbl_19783 scaffold_18 - intron_skips_exon 3915622-3917646 asmbl_19782 // Retained and Spliced Intron # retained_intron 4071656-4072114 (orient:-) max_ev_support = 2 # spliced_intron 4071656-4072114 (orient:-) max_ev_support = 1 scaffold_18 - intron 4071656-4072114 asmbl_19790 scaffold_18 - retained_intron 4071656-4072114 asmbl_19788 // Retained and Spliced Intron # retained_intron 4605161-4605249 (orient:-) max_ev_support = 1 # spliced_intron 4605161-4605249 (orient:-) max_ev_support = 2 scaffold_18 - intron 4605161-4605249 asmbl_19810 scaffold_18 - retained_intron 4605161-4605249 asmbl_19811 // Retained and Spliced Intron # retained_intron 4724166-4724270 (orient:-) max_ev_support = 2 # spliced_intron 4724166-4724270 (orient:-) max_ev_support = 2 scaffold_18 - intron 4724166-4724270 asmbl_19821 scaffold_18 - retained_intron 4724166-4724270 asmbl_19820 // Retained and Spliced Intron # retained_intron 5563424-5563617 (orient:-) max_ev_support = 2 # spliced_intron 5563424-5563617 (orient:-) max_ev_support = 3 scaffold_18 - intron 5563424-5563617 asmbl_19852,asmbl_19853,asmbl_19855 scaffold_18 - retained_intron 5563424-5563617 asmbl_19854,asmbl_19856 // Retained and Spliced Intron # retained_intron 5584921-5585267 (orient:-) max_ev_support = 2 # spliced_intron 5584921-5585267 (orient:-) max_ev_support = 2 scaffold_18 - intron 5584921-5585267 asmbl_19863,asmbl_19864 scaffold_18 - retained_intron 5584921-5585267 asmbl_19862,asmbl_19865 // Retained and Spliced Intron # retained_intron 5905385-5905424 (orient:-) max_ev_support = 3 # spliced_intron 5905385-5905424 (orient:-) max_ev_support = 1 scaffold_18 - intron 5905385-5905424 asmbl_19876 scaffold_18 - retained_intron 5905385-5905424 asmbl_19875,asmbl_19877 // Exon Skipping and Retention # skipped_exon 5905385-5905544 (orient:-) max_ev_support = 1 # retained_exon 5905425-5905504 (orient:-) max_ev_support = 1 scaffold_18 - retained_exons 5905425-5905504 asmbl_19876 scaffold_18 - intron_skips_exon 5905385-5905544 asmbl_19879 // Exon Skipping and Retention # skipped_exon 5905545-5905824 (orient:-) max_ev_support = 1 # retained_exon 5905585-5905664 (orient:-) max_ev_support = 1 scaffold_18 - retained_exons 5905585-5905664 asmbl_19876,asmbl_19877 scaffold_18 - intron_skips_exon 5905545-5905824 asmbl_19875 // Retained and Spliced Intron # retained_intron 5905665-5905784 (orient:-) max_ev_support = 1 # spliced_intron 5905665-5905784 (orient:-) max_ev_support = 1 scaffold_18 - intron 5905665-5905784 asmbl_19876,asmbl_19877,asmbl_19879 scaffold_18 - retained_intron 5905665-5905784 asmbl_19878 // Retained and Spliced Intron # retained_intron 6757958-6758114 (orient:-) max_ev_support = 3 # spliced_intron 6757958-6758114 (orient:-) max_ev_support = 2 scaffold_18 - intron 6757958-6758114 asmbl_19912 scaffold_18 - retained_intron 6757958-6758114 asmbl_19911 // Exon Skipping and Retention # skipped_exon 7172231-7172664 (orient:-) max_ev_support = 3 # retained_exon 7172462-7172566 (orient:-) max_ev_support = 3 scaffold_18 - retained_exons 7172462-7172566 asmbl_19927,asmbl_19929 scaffold_18 - intron_skips_exon 7172231-7172664 asmbl_19926 // Retained and Spliced Intron # retained_intron 7481614-7482977 (orient:-) max_ev_support = 3 # spliced_intron 7481614-7482977 (orient:-) max_ev_support = 1 scaffold_18 - intron 7481614-7482977 asmbl_19937 scaffold_18 - retained_intron 7481614-7482977 asmbl_19936 // Retained and Spliced Intron # retained_intron 7509091-7509220 (orient:-) max_ev_support = 2 # spliced_intron 7509091-7509220 (orient:-) max_ev_support = 3 scaffold_18 - intron 7509091-7509220 asmbl_19947,asmbl_19949 scaffold_18 - retained_intron 7509091-7509220 asmbl_19948 // Retained and Spliced Intron # retained_intron 7629659-7631669 (orient:-) max_ev_support = 2 # spliced_intron 7629659-7631669 (orient:-) max_ev_support = 2 scaffold_18 - intron 7629659-7631669 asmbl_19962,asmbl_19967 scaffold_18 - retained_intron 7629659-7631669 asmbl_19961,asmbl_19965 // Retained and Spliced Intron # retained_intron 7631535-7631646 (orient:-) max_ev_support = 2 # spliced_intron 7631535-7631646 (orient:-) max_ev_support = 1 scaffold_18 - intron 7631535-7631646 asmbl_19966 scaffold_18 - retained_intron 7631535-7631646 asmbl_19961,asmbl_19965 // Retained and Spliced Intron # retained_intron 7631535-7631669 (orient:-) max_ev_support = 2 # spliced_intron 7631535-7631669 (orient:-) max_ev_support = 3 scaffold_18 - intron 7631535-7631669 asmbl_19959,asmbl_19960 scaffold_18 - retained_intron 7631535-7631669 asmbl_19961,asmbl_19965 // Retained and Spliced Intron # retained_intron 7864869-7866281 (orient:-) max_ev_support = 1 # spliced_intron 7864869-7866281 (orient:-) max_ev_support = 2 scaffold_18 - intron 7864869-7866281 asmbl_19981 scaffold_18 - retained_intron 7864869-7866281 asmbl_19983 // Retained and Spliced Intron # retained_intron 7866184-7866281 (orient:-) max_ev_support = 1 # spliced_intron 7866184-7866281 (orient:-) max_ev_support = 1 scaffold_18 - intron 7866184-7866281 asmbl_19982,asmbl_19984 scaffold_18 - retained_intron 7866184-7866281 asmbl_19983 // Retained and Spliced Intron # retained_intron 7943320-7944083 (orient:-) max_ev_support = 2 # spliced_intron 7943320-7944083 (orient:-) max_ev_support = 1 scaffold_18 - intron 7943320-7944083 asmbl_19987 scaffold_18 - retained_intron 7943320-7944083 asmbl_19986 // Retained and Spliced Intron # retained_intron 7943320-7944087 (orient:-) max_ev_support = 2 # spliced_intron 7943320-7944087 (orient:-) max_ev_support = 1 scaffold_18 - intron 7943320-7944087 asmbl_19988 scaffold_18 - retained_intron 7943320-7944087 asmbl_19986 // Retained and Spliced Intron # retained_intron 7943323-7944083 (orient:-) max_ev_support = 2 # spliced_intron 7943323-7944083 (orient:-) max_ev_support = 1 scaffold_18 - intron 7943323-7944083 asmbl_19989 scaffold_18 - retained_intron 7943323-7944083 asmbl_19986 // Retained and Spliced Intron # retained_intron 8372775-8373987 (orient:-) max_ev_support = 2 # spliced_intron 8372775-8373987 (orient:-) max_ev_support = 1 scaffold_18 - intron 8372775-8373987 asmbl_20001,asmbl_20002 scaffold_18 - retained_intron 8372775-8373987 asmbl_20000 // Retained and Spliced Intron # retained_intron 8425824-8425992 (orient:-) max_ev_support = 3 # spliced_intron 8425824-8425992 (orient:-) max_ev_support = 3 scaffold_18 - intron 8425824-8425992 asmbl_20010 scaffold_18 - retained_intron 8425824-8425992 asmbl_20009 // Retained and Spliced Intron # retained_intron 8436469-8436543 (orient:-) max_ev_support = 2 # spliced_intron 8436469-8436543 (orient:-) max_ev_support = 3 scaffold_18 - intron 8436469-8436543 asmbl_20011 scaffold_18 - retained_intron 8436469-8436543 asmbl_20012,asmbl_20013 // Retained and Spliced Intron # retained_intron 8862547-8863588 (orient:-) max_ev_support = 2 # spliced_intron 8862547-8863588 (orient:-) max_ev_support = 2 scaffold_18 - intron 8862547-8863588 asmbl_20027,asmbl_20029,asmbl_20030 scaffold_18 - retained_intron 8862547-8863588 asmbl_20025,asmbl_20026,asmbl_20028,asmbl_20031,asmbl_20032 // Retained and Spliced Intron # retained_intron 8865903-8866098 (orient:-) max_ev_support = 3 # spliced_intron 8865903-8866098 (orient:-) max_ev_support = 1 scaffold_18 - intron 8865903-8866098 asmbl_20030,asmbl_20031,asmbl_20033 scaffold_18 - retained_intron 8865903-8866098 asmbl_20025 // Retained and Spliced Intron # retained_intron 8863627-8864527 (orient:-) max_ev_support = 2 # spliced_intron 8863627-8864527 (orient:-) max_ev_support = 2 scaffold_18 - intron 8863627-8864527 asmbl_20025,asmbl_20027,asmbl_20028,asmbl_20029,asmbl_20030,asmbl_20031,asmbl_20032,asmbl_20033 scaffold_18 - retained_intron 8863627-8864527 asmbl_20026 // Retained and Spliced Intron # retained_intron 8865798-8865880 (orient:-) max_ev_support = 1 # spliced_intron 8865798-8865880 (orient:-) max_ev_support = 2 scaffold_18 - intron 8865798-8865880 asmbl_20025,asmbl_20027,asmbl_20028,asmbl_20030,asmbl_20031 scaffold_18 - retained_intron 8865798-8865880 asmbl_20029,asmbl_20032,asmbl_20033 // Exon Skipping and Retention # skipped_exon 8865903-8866225 (orient:-) max_ev_support = 2 # retained_exon 8866099-8866113 (orient:-) max_ev_support = 1 scaffold_18 - retained_exons 8866099-8866113 asmbl_20030,asmbl_20031,asmbl_20033 scaffold_18 - intron_skips_exon 8865903-8866225 asmbl_20027,asmbl_20028,asmbl_20029,asmbl_20032 // Retained and Spliced Intron # retained_intron 8883548-8883630 (orient:-) max_ev_support = 3 # spliced_intron 8883548-8883630 (orient:-) max_ev_support = 3 scaffold_18 - intron 8883548-8883630 asmbl_20034,asmbl_20039 scaffold_18 - retained_intron 8883548-8883630 asmbl_20035 // Exon Skipping and Retention # skipped_exon 8875038-8876200 (orient:-) max_ev_support = 2 # retained_exon 8875853-8875900 (orient:-) max_ev_support = 1 scaffold_18 - retained_exons 8875853-8875900 asmbl_20038,asmbl_20040 scaffold_18 - intron_skips_exon 8875038-8876200 asmbl_20036,asmbl_20039 // Exon Skipping and Retention # skipped_exon 8882159-8883788 (orient:-) max_ev_support = 2 # retained_exon 8883518-8883675 (orient:-) max_ev_support = 1 scaffold_18 - retained_exons 8883518-8883547,8883631-8883675 asmbl_20039 scaffold_18 - intron_skips_exon 8882159-8883788 asmbl_20036,asmbl_20038 // Retained and Spliced Intron # retained_intron 8912338-8912443 (orient:-) max_ev_support = 3 # spliced_intron 8912338-8912443 (orient:-) max_ev_support = 2 scaffold_18 - intron 8912338-8912443 asmbl_20044,asmbl_20045,asmbl_20046,asmbl_20047,asmbl_20050,asmbl_20051,asmbl_20053 scaffold_18 - retained_intron 8912338-8912443 asmbl_20042 // Retained and Spliced Intron # retained_intron 8912486-8912797 (orient:-) max_ev_support = 2 # spliced_intron 8912486-8912797 (orient:-) max_ev_support = 1 scaffold_18 - intron 8912486-8912797 asmbl_20053 scaffold_18 - retained_intron 8912486-8912797 asmbl_20042,asmbl_20044,asmbl_20046,asmbl_20047,asmbl_20050 // Retained and Spliced Intron # retained_intron 8912486-8913423 (orient:-) max_ev_support = 2 # spliced_intron 8912486-8913423 (orient:-) max_ev_support = 2 scaffold_18 - intron 8912486-8913423 asmbl_20045 scaffold_18 - retained_intron 8912486-8913423 asmbl_20042,asmbl_20044,asmbl_20046,asmbl_20047,asmbl_20050 // Retained and Spliced Intron # retained_intron 8912486-8913581 (orient:-) max_ev_support = 2 # spliced_intron 8912486-8913581 (orient:-) max_ev_support = 1 scaffold_18 - intron 8912486-8913581 asmbl_20051 scaffold_18 - retained_intron 8912486-8913581 asmbl_20042,asmbl_20044,asmbl_20050 // Retained and Spliced Intron # retained_intron 8913428-8913585 (orient:-) max_ev_support = 2 # spliced_intron 8913428-8913585 (orient:-) max_ev_support = 2 scaffold_18 - intron 8913428-8913585 asmbl_20046,asmbl_20047 scaffold_18 - retained_intron 8913428-8913585 asmbl_20042,asmbl_20044,asmbl_20045,asmbl_20050,asmbl_20053 // Retained and Spliced Intron # retained_intron 8911050-8911533 (orient:-) max_ev_support = 1 # spliced_intron 8911050-8911533 (orient:-) max_ev_support = 2 scaffold_18 - intron 8911050-8911533 asmbl_20042,asmbl_20044,asmbl_20045,asmbl_20046,asmbl_20047,asmbl_20048,asmbl_20050,asmbl_20051,asmbl_20053 scaffold_18 - retained_intron 8911050-8911533 asmbl_20049 // Exon Skipping and Retention # skipped_exon 9258671-9259564 (orient:-) max_ev_support = 3 # retained_exon 9259388-9259473 (orient:-) max_ev_support = 3 scaffold_18 - retained_exons 9259388-9259473 asmbl_20059 scaffold_18 - intron_skips_exon 9258671-9259564 asmbl_20060 // Retained and Spliced Intron # retained_intron 9258671-9259387 (orient:-) max_ev_support = 2 # spliced_intron 9258671-9259387 (orient:-) max_ev_support = 3 scaffold_18 - intron 9258671-9259387 asmbl_20059 scaffold_18 - retained_intron 9258671-9259387 asmbl_20061,asmbl_20062 // Retained and Spliced Intron # retained_intron 9258671-9259564 (orient:-) max_ev_support = 1 # spliced_intron 9258671-9259564 (orient:-) max_ev_support = 3 scaffold_18 - intron 9258671-9259564 asmbl_20060 scaffold_18 - retained_intron 9258671-9259564 asmbl_20062 // Retained and Spliced Intron # retained_intron 9259474-9259564 (orient:-) max_ev_support = 1 # spliced_intron 9259474-9259564 (orient:-) max_ev_support = 3 scaffold_18 - intron 9259474-9259564 asmbl_20059,asmbl_20061 scaffold_18 - retained_intron 9259474-9259564 asmbl_20062 // Retained and Spliced Intron # retained_intron 9628583-9628642 (orient:-) max_ev_support = 1 # spliced_intron 9628583-9628642 (orient:-) max_ev_support = 1 scaffold_18 - intron 9628583-9628642 asmbl_20065,asmbl_20066,asmbl_20067 scaffold_18 - retained_intron 9628583-9628642 asmbl_20063,asmbl_20068,asmbl_20069 // Exon Skipping and Retention # skipped_exon 9633911-9635957 (orient:-) max_ev_support = 2 # retained_exon 9634957-9635118 (orient:-) max_ev_support = 1 scaffold_18 - retained_exons 9634957-9635118 asmbl_20066 scaffold_18 - intron_skips_exon 9633911-9635957 asmbl_20063 // Retained and Spliced Intron # retained_intron 9629358-9629525 (orient:-) max_ev_support = 1 # spliced_intron 9629358-9629525 (orient:-) max_ev_support = 1 scaffold_18 - intron 9629358-9629525 asmbl_20063,asmbl_20065,asmbl_20066,asmbl_20067,asmbl_20068 scaffold_18 - retained_intron 9629358-9629525 asmbl_20069 // Retained and Spliced Intron # retained_intron 9787536-9787656 (orient:-) max_ev_support = 2 # spliced_intron 9787536-9787656 (orient:-) max_ev_support = 1 scaffold_18 - intron 9787536-9787656 asmbl_20085,asmbl_20086,asmbl_20087 scaffold_18 - retained_intron 9787536-9787656 asmbl_20084 // Retained and Spliced Intron # retained_intron 9787711-9788236 (orient:-) max_ev_support = 2 # spliced_intron 9787711-9788236 (orient:-) max_ev_support = 1 scaffold_18 - intron 9787711-9788236 asmbl_20087 scaffold_18 - retained_intron 9787711-9788236 asmbl_20084,asmbl_20085 // Retained and Spliced Intron # retained_intron 9787942-9788236 (orient:-) max_ev_support = 2 # spliced_intron 9787942-9788236 (orient:-) max_ev_support = 1 scaffold_18 - intron 9787942-9788236 asmbl_20086 scaffold_18 - retained_intron 9787942-9788236 asmbl_20084,asmbl_20085 // Retained and Spliced Intron # retained_intron 9804343-9804380 (orient:-) max_ev_support = 5 # spliced_intron 9804343-9804380 (orient:-) max_ev_support = 1 scaffold_18 - intron 9804343-9804380 asmbl_20091 scaffold_18 - retained_intron 9804343-9804380 asmbl_20090,asmbl_20092 // Retained and Spliced Intron # retained_intron 9804399-9804418 (orient:-) max_ev_support = 5 # spliced_intron 9804399-9804418 (orient:-) max_ev_support = 1 scaffold_18 - intron 9804399-9804418 asmbl_20092 scaffold_18 - retained_intron 9804399-9804418 asmbl_20090,asmbl_20091 // Exon Skipping and Retention # skipped_exon 10004393-10007012 (orient:-) max_ev_support = 1 # retained_exon 10005843-10005935 (orient:-) max_ev_support = 1 scaffold_18 - retained_exons 10005843-10005935 asmbl_20096 scaffold_18 - intron_skips_exon 10004393-10007012 asmbl_20097 // Exon Skipping and Retention # skipped_exon 10187665-10188039 (orient:-) max_ev_support = 1 # retained_exon 10187820-10187828 (orient:-) max_ev_support = 1 scaffold_18 - retained_exons 10187820-10187828 asmbl_20100 scaffold_18 - intron_skips_exon 10187665-10188039 asmbl_20101 // Exon Skipping and Retention # skipped_exon 10188895-10189251 (orient:-) max_ev_support = 1 # retained_exon 10189109-10189161 (orient:-) max_ev_support = 1 scaffold_18 - retained_exons 10189109-10189161 asmbl_20100 scaffold_18 - intron_skips_exon 10188895-10189251 asmbl_20101 // Retained and Spliced Intron # retained_intron 11296913-11297076 (orient:-) max_ev_support = 2 # spliced_intron 11296913-11297076 (orient:-) max_ev_support = 2 scaffold_18 - intron 11296913-11297076 asmbl_20129,asmbl_20130 scaffold_18 - retained_intron 11296913-11297076 asmbl_20128 // Retained and Spliced Intron # retained_intron 11297253-11297345 (orient:-) max_ev_support = 2 # spliced_intron 11297253-11297345 (orient:-) max_ev_support = 2 scaffold_18 - intron 11297253-11297345 asmbl_20130 scaffold_18 - retained_intron 11297253-11297345 asmbl_20128,asmbl_20129 // Retained and Spliced Intron # retained_intron 12400501-12400526 (orient:-) max_ev_support = 3 # spliced_intron 12400501-12400526 (orient:-) max_ev_support = 1 scaffold_18 - intron 12400501-12400526 asmbl_20145,asmbl_20146 scaffold_18 - retained_intron 12400501-12400526 asmbl_20142,asmbl_20143,asmbl_20144 // Retained and Spliced Intron # retained_intron 12400319-12400383 (orient:-) max_ev_support = 1 # spliced_intron 12400319-12400383 (orient:-) max_ev_support = 1 scaffold_18 - intron 12400319-12400383 asmbl_20142 scaffold_18 - retained_intron 12400319-12400383 asmbl_20144,asmbl_20145 // Retained and Spliced Intron # retained_intron 12400332-12400435 (orient:-) max_ev_support = 1 # spliced_intron 12400332-12400435 (orient:-) max_ev_support = 1 scaffold_18 - intron 12400332-12400435 asmbl_20143,asmbl_20146 scaffold_18 - retained_intron 12400332-12400435 asmbl_20144,asmbl_20145 // Retained and Spliced Intron # retained_intron 12603092-12603275 (orient:-) max_ev_support = 2 # spliced_intron 12603092-12603275 (orient:-) max_ev_support = 2 scaffold_18 - intron 12603092-12603275 asmbl_20157 scaffold_18 - retained_intron 12603092-12603275 asmbl_20158 // Exon Skipping and Retention # skipped_exon 12609003-12609670 (orient:-) max_ev_support = 2 # retained_exon 12609437-12609570 (orient:-) max_ev_support = 1 scaffold_18 - retained_exons 12609437-12609570 asmbl_20160 scaffold_18 - intron_skips_exon 12609003-12609670 asmbl_20159 // Retained and Spliced Intron # retained_intron 13150111-13150230 (orient:-) max_ev_support = 1 # spliced_intron 13150111-13150230 (orient:-) max_ev_support = 1 scaffold_18 - intron 13150111-13150230 asmbl_20168 scaffold_18 - retained_intron 13150111-13150230 asmbl_20167 // Retained and Spliced Intron # retained_intron 13150203-13150282 (orient:-) max_ev_support = 1 # spliced_intron 13150203-13150282 (orient:-) max_ev_support = 1 scaffold_18 - intron 13150203-13150282 asmbl_20166 scaffold_18 - retained_intron 13150203-13150282 asmbl_20167 // Retained and Spliced Intron # retained_intron 13634278-13634349 (orient:-) max_ev_support = 1 # spliced_intron 13634278-13634349 (orient:-) max_ev_support = 2 scaffold_18 - intron 13634278-13634349 asmbl_20177 scaffold_18 - retained_intron 13634278-13634349 asmbl_20178,asmbl_20179 // Exon Skipping and Retention # skipped_exon 204474-205653 (orient:+) max_ev_support = 2 # retained_exon 205250-205340 (orient:+) max_ev_support = 2 scaffold_18 + retained_exons 205250-205340 asmbl_20272,asmbl_20278 scaffold_18 + intron_skips_exon 204474-205653 asmbl_20273,asmbl_20276,asmbl_20277 // Retained and Spliced Intron # retained_intron 206330-206510 (orient:+) max_ev_support = 2 # spliced_intron 206330-206510 (orient:+) max_ev_support = 2 scaffold_18 + intron 206330-206510 asmbl_20274,asmbl_20276 scaffold_18 + retained_intron 206330-206510 asmbl_20275 // Retained and Spliced Intron # retained_intron 206330-206526 (orient:+) max_ev_support = 2 # spliced_intron 206330-206526 (orient:+) max_ev_support = 2 scaffold_18 + intron 206330-206526 asmbl_20272,asmbl_20273,asmbl_20277,asmbl_20278,asmbl_20279 scaffold_18 + retained_intron 206330-206526 asmbl_20275 // Retained and Spliced Intron # retained_intron 281385-282108 (orient:+) max_ev_support = 3 # spliced_intron 281385-282108 (orient:+) max_ev_support = 2 scaffold_18 + intron 281385-282108 asmbl_20288 scaffold_18 + retained_intron 281385-282108 asmbl_20285 // Retained and Spliced Intron # retained_intron 281385-282126 (orient:+) max_ev_support = 3 # spliced_intron 281385-282126 (orient:+) max_ev_support = 2 scaffold_18 + intron 281385-282126 asmbl_20287 scaffold_18 + retained_intron 281385-282126 asmbl_20285 // Retained and Spliced Intron # retained_intron 282012-282108 (orient:+) max_ev_support = 1 # spliced_intron 282012-282108 (orient:+) max_ev_support = 1 scaffold_18 + intron 282012-282108 asmbl_20286 scaffold_18 + retained_intron 282012-282108 asmbl_20285 // Retained and Spliced Intron # retained_intron 616372-616548 (orient:+) max_ev_support = 2 # spliced_intron 616372-616548 (orient:+) max_ev_support = 3 scaffold_18 + intron 616372-616548 asmbl_20307 scaffold_18 + retained_intron 616372-616548 asmbl_20308 // Retained and Spliced Intron # retained_intron 632566-632655 (orient:+) max_ev_support = 2 # spliced_intron 632566-632655 (orient:+) max_ev_support = 1 scaffold_18 + intron 632566-632655 asmbl_20313 scaffold_18 + retained_intron 632566-632655 asmbl_20311 // Retained and Spliced Intron # retained_intron 632566-632852 (orient:+) max_ev_support = 2 # spliced_intron 632566-632852 (orient:+) max_ev_support = 2 scaffold_18 + intron 632566-632852 asmbl_20312 scaffold_18 + retained_intron 632566-632852 asmbl_20311 // Retained and Spliced Intron # retained_intron 823947-824156 (orient:+) max_ev_support = 2 # spliced_intron 823947-824156 (orient:+) max_ev_support = 2 scaffold_18 + intron 823947-824156 asmbl_20327,asmbl_20329 scaffold_18 + retained_intron 823947-824156 asmbl_20326,asmbl_20328,asmbl_20330 // Retained and Spliced Intron # retained_intron 824174-824499 (orient:+) max_ev_support = 2 # spliced_intron 824174-824499 (orient:+) max_ev_support = 1 scaffold_18 + intron 824174-824499 asmbl_20329 scaffold_18 + retained_intron 824174-824499 asmbl_20326,asmbl_20330 // Retained and Spliced Intron # retained_intron 824174-824807 (orient:+) max_ev_support = 2 # spliced_intron 824174-824807 (orient:+) max_ev_support = 2 scaffold_18 + intron 824174-824807 asmbl_20327,asmbl_20328 scaffold_18 + retained_intron 824174-824807 asmbl_20326,asmbl_20330 // Retained and Spliced Intron # retained_intron 824551-824807 (orient:+) max_ev_support = 2 # spliced_intron 824551-824807 (orient:+) max_ev_support = 1 scaffold_18 + intron 824551-824807 asmbl_20329 scaffold_18 + retained_intron 824551-824807 asmbl_20326,asmbl_20330 // Exon Skipping and Retention # skipped_exon 824174-824807 (orient:+) max_ev_support = 2 # retained_exon 824500-824550 (orient:+) max_ev_support = 1 scaffold_18 + retained_exons 824500-824550 asmbl_20329 scaffold_18 + intron_skips_exon 824174-824807 asmbl_20327,asmbl_20328 // Retained and Spliced Intron # retained_intron 822928-823047 (orient:+) max_ev_support = 1 # spliced_intron 822928-823047 (orient:+) max_ev_support = 2 scaffold_18 + intron 822928-823047 asmbl_20326,asmbl_20327,asmbl_20329 scaffold_18 + retained_intron 822928-823047 asmbl_20330 // Retained and Spliced Intron # retained_intron 823178-823278 (orient:+) max_ev_support = 1 # spliced_intron 823178-823278 (orient:+) max_ev_support = 2 scaffold_18 + intron 823178-823278 asmbl_20326,asmbl_20327,asmbl_20329 scaffold_18 + retained_intron 823178-823278 asmbl_20330 // Retained and Spliced Intron # retained_intron 1434071-1434201 (orient:+) max_ev_support = 2 # spliced_intron 1434071-1434201 (orient:+) max_ev_support = 3 scaffold_18 + intron 1434071-1434201 asmbl_20352 scaffold_18 + retained_intron 1434071-1434201 asmbl_20353 // Retained and Spliced Intron # retained_intron 1499817-1499941 (orient:+) max_ev_support = 2 # spliced_intron 1499817-1499941 (orient:+) max_ev_support = 3 scaffold_18 + intron 1499817-1499941 asmbl_20354 scaffold_18 + retained_intron 1499817-1499941 asmbl_20355,asmbl_20356 // Retained and Spliced Intron # retained_intron 1500051-1500145 (orient:+) max_ev_support = 2 # spliced_intron 1500051-1500145 (orient:+) max_ev_support = 3 scaffold_18 + intron 1500051-1500145 asmbl_20354,asmbl_20356 scaffold_18 + retained_intron 1500051-1500145 asmbl_20355 // Exon Skipping and Retention # skipped_exon 1512768-1513566 (orient:+) max_ev_support = 2 # retained_exon 1512896-1512941 (orient:+) max_ev_support = 1 scaffold_18 + retained_exons 1512896-1512941 asmbl_20360 scaffold_18 + intron_skips_exon 1512768-1513566 asmbl_20358 // Exon Skipping and Retention # skipped_exon 1512722-1513566 (orient:+) max_ev_support = 1 # retained_exon 1512896-1512941 (orient:+) max_ev_support = 1 scaffold_18 + retained_exons 1512896-1512941 asmbl_20360 scaffold_18 + intron_skips_exon 1512722-1513566 asmbl_20359 // Retained and Spliced Intron # retained_intron 1860254-1860365 (orient:+) max_ev_support = 1 # spliced_intron 1860254-1860365 (orient:+) max_ev_support = 2 scaffold_18 + intron 1860254-1860365 asmbl_20383,asmbl_20384 scaffold_18 + retained_intron 1860254-1860365 asmbl_20385 // Retained and Spliced Intron # retained_intron 2082391-2082658 (orient:+) max_ev_support = 2 # spliced_intron 2082391-2082658 (orient:+) max_ev_support = 2 scaffold_18 + intron 2082391-2082658 asmbl_20402,asmbl_20403,asmbl_20405 scaffold_18 + retained_intron 2082391-2082658 asmbl_20401,asmbl_20404 // Retained and Spliced Intron # retained_intron 2535900-2536164 (orient:+) max_ev_support = 1 # spliced_intron 2535900-2536164 (orient:+) max_ev_support = 3 scaffold_18 + intron 2535900-2536164 asmbl_20410 scaffold_18 + retained_intron 2535900-2536164 asmbl_20411 // Exon Skipping and Retention # skipped_exon 2832889-2835573 (orient:+) max_ev_support = 3 # retained_exon 2833801-2834055 (orient:+) max_ev_support = 2 scaffold_18 + retained_exons 2833801-2834055 asmbl_20422 scaffold_18 + intron_skips_exon 2832889-2835573 asmbl_20421 // Retained and Spliced Intron # retained_intron 2834262-2835573 (orient:+) max_ev_support = 2 # spliced_intron 2834262-2835573 (orient:+) max_ev_support = 2 scaffold_18 + intron 2834262-2835573 asmbl_20424 scaffold_18 + retained_intron 2834262-2835573 asmbl_20426 // Retained and Spliced Intron # retained_intron 2835065-2835573 (orient:+) max_ev_support = 2 # spliced_intron 2835065-2835573 (orient:+) max_ev_support = 2 scaffold_18 + intron 2835065-2835573 asmbl_20425 scaffold_18 + retained_intron 2835065-2835573 asmbl_20426 // Retained and Spliced Intron # retained_intron 3213856-3213934 (orient:+) max_ev_support = 2 # spliced_intron 3213856-3213934 (orient:+) max_ev_support = 2 scaffold_18 + intron 3213856-3213934 asmbl_20449 scaffold_18 + retained_intron 3213856-3213934 asmbl_20450 // Retained and Spliced Intron # retained_intron 3220749-3220823 (orient:+) max_ev_support = 1 # spliced_intron 3220749-3220823 (orient:+) max_ev_support = 2 scaffold_18 + intron 3220749-3220823 asmbl_20451 scaffold_18 + retained_intron 3220749-3220823 asmbl_20452 // Exon Skipping and Retention # skipped_exon 3636836-3638415 (orient:+) max_ev_support = 2 # retained_exon 3637424-3637456 (orient:+) max_ev_support = 2 scaffold_18 + retained_exons 3637424-3637456 asmbl_20465 scaffold_18 + intron_skips_exon 3636836-3638415 asmbl_20466,asmbl_20467,asmbl_20468 // Retained and Spliced Intron # retained_intron 4077684-4077771 (orient:+) max_ev_support = 2 # spliced_intron 4077684-4077771 (orient:+) max_ev_support = 2 scaffold_18 + intron 4077684-4077771 asmbl_20491,asmbl_20492,asmbl_20493,asmbl_20494 scaffold_18 + retained_intron 4077684-4077771 asmbl_20495 // Exon Skipping and Retention # skipped_exon 4122717-4123966 (orient:+) max_ev_support = 2 # retained_exon 4123158-4123280 (orient:+) max_ev_support = 3 scaffold_18 + retained_exons 4123158-4123280 asmbl_20497,asmbl_20498 scaffold_18 + intron_skips_exon 4122717-4123966 asmbl_20499,asmbl_20500 // Retained and Spliced Intron # retained_intron 4308398-4308494 (orient:+) max_ev_support = 1 # spliced_intron 4308398-4308494 (orient:+) max_ev_support = 1 scaffold_18 + intron 4308398-4308494 asmbl_20511 scaffold_18 + retained_intron 4308398-4308494 asmbl_20510 // Exon Skipping and Retention # skipped_exon 4463410-4465472 (orient:+) max_ev_support = 2 # retained_exon 4463867-4463917 (orient:+) max_ev_support = 2 scaffold_18 + retained_exons 4463867-4463917 asmbl_20524 scaffold_18 + intron_skips_exon 4463410-4465472 asmbl_20523,asmbl_20525 // Retained and Spliced Intron # retained_intron 4570648-4570746 (orient:+) max_ev_support = 2 # spliced_intron 4570648-4570746 (orient:+) max_ev_support = 2 scaffold_18 + intron 4570648-4570746 asmbl_20532 scaffold_18 + retained_intron 4570648-4570746 asmbl_20531,asmbl_20534,asmbl_20535 // Retained and Spliced Intron # retained_intron 4571830-4572199 (orient:+) max_ev_support = 1 # spliced_intron 4571830-4572199 (orient:+) max_ev_support = 2 scaffold_18 + intron 4571830-4572199 asmbl_20531,asmbl_20532,asmbl_20535 scaffold_18 + retained_intron 4571830-4572199 asmbl_20534 // Retained and Spliced Intron # retained_intron 4574673-4575183 (orient:+) max_ev_support = 1 # spliced_intron 4574673-4575183 (orient:+) max_ev_support = 2 scaffold_18 + intron 4574673-4575183 asmbl_20531,asmbl_20532,asmbl_20534 scaffold_18 + retained_intron 4574673-4575183 asmbl_20535 // Retained and Spliced Intron # retained_intron 4690186-4690277 (orient:+) max_ev_support = 2 # spliced_intron 4690186-4690277 (orient:+) max_ev_support = 1 scaffold_18 + intron 4690186-4690277 asmbl_20541,asmbl_20543 scaffold_18 + retained_intron 4690186-4690277 asmbl_20542 // Retained and Spliced Intron # retained_intron 4708153-4708225 (orient:+) max_ev_support = 2 # spliced_intron 4708153-4708225 (orient:+) max_ev_support = 2 scaffold_18 + intron 4708153-4708225 asmbl_20546 scaffold_18 + retained_intron 4708153-4708225 asmbl_20547 // Retained and Spliced Intron # retained_intron 4768861-4768995 (orient:+) max_ev_support = 3 # spliced_intron 4768861-4768995 (orient:+) max_ev_support = 1 scaffold_18 + intron 4768861-4768995 asmbl_20559 scaffold_18 + retained_intron 4768861-4768995 asmbl_20553 // Retained and Spliced Intron # retained_intron 4768861-4769106 (orient:+) max_ev_support = 3 # spliced_intron 4768861-4769106 (orient:+) max_ev_support = 1 scaffold_18 + intron 4768861-4769106 asmbl_20555 scaffold_18 + retained_intron 4768861-4769106 asmbl_20553 // Retained and Spliced Intron # retained_intron 4848613-4848998 (orient:+) max_ev_support = 3 # spliced_intron 4848613-4848998 (orient:+) max_ev_support = 3 scaffold_18 + intron 4848613-4848998 asmbl_20569 scaffold_18 + retained_intron 4848613-4848998 asmbl_20567,asmbl_20570 // Exon Skipping and Retention # skipped_exon 4848613-4849494 (orient:+) max_ev_support = 3 # retained_exon 4848999-4849092 (orient:+) max_ev_support = 3 scaffold_18 + retained_exons 4848999-4849092 asmbl_20569 scaffold_18 + intron_skips_exon 4848613-4849494 asmbl_20568 // Retained and Spliced Intron # retained_intron 5583163-5583302 (orient:+) max_ev_support = 7 # spliced_intron 5583163-5583302 (orient:+) max_ev_support = 1 scaffold_18 + intron 5583163-5583302 asmbl_20589 scaffold_18 + retained_intron 5583163-5583302 asmbl_20588 // Retained and Spliced Intron # retained_intron 5606473-5606848 (orient:+) max_ev_support = 2 # spliced_intron 5606473-5606848 (orient:+) max_ev_support = 2 scaffold_18 + intron 5606473-5606848 asmbl_20594 scaffold_18 + retained_intron 5606473-5606848 asmbl_20593 // Retained and Spliced Intron # retained_intron 5725934-5726148 (orient:+) max_ev_support = 2 # spliced_intron 5725934-5726148 (orient:+) max_ev_support = 3 scaffold_18 + intron 5725934-5726148 asmbl_20595 scaffold_18 + retained_intron 5725934-5726148 asmbl_20596 // Retained and Spliced Intron # retained_intron 5730383-5730838 (orient:+) max_ev_support = 3 # spliced_intron 5730383-5730838 (orient:+) max_ev_support = 3 scaffold_18 + intron 5730383-5730838 asmbl_20598 scaffold_18 + retained_intron 5730383-5730838 asmbl_20597 // Exon Skipping and Retention # skipped_exon 5779433-5781380 (orient:+) max_ev_support = 1 # retained_exon 5780359-5780463 (orient:+) max_ev_support = 2 scaffold_18 + retained_exons 5780359-5780463 asmbl_20602,asmbl_20603,asmbl_20604 scaffold_18 + intron_skips_exon 5779433-5781380 asmbl_20605 // Retained and Spliced Intron # retained_intron 5787953-5788078 (orient:+) max_ev_support = 1 # spliced_intron 5787953-5788078 (orient:+) max_ev_support = 1 scaffold_18 + intron 5787953-5788078 asmbl_20602 scaffold_18 + retained_intron 5787953-5788078 asmbl_20604,asmbl_20605,asmbl_20606 // Retained and Spliced Intron # retained_intron 5910191-5910450 (orient:+) max_ev_support = 2 # spliced_intron 5910191-5910450 (orient:+) max_ev_support = 2 scaffold_18 + intron 5910191-5910450 asmbl_20619 scaffold_18 + retained_intron 5910191-5910450 asmbl_20618 // Retained and Spliced Intron # retained_intron 5988273-5988742 (orient:+) max_ev_support = 2 # spliced_intron 5988273-5988742 (orient:+) max_ev_support = 2 scaffold_18 + intron 5988273-5988742 asmbl_20641,asmbl_20642 scaffold_18 + retained_intron 5988273-5988742 asmbl_20638,asmbl_20646 // Exon Skipping and Retention # skipped_exon 5984775-5987240 (orient:+) max_ev_support = 2 # retained_exon 5985192-5985311 (orient:+) max_ev_support = 2 scaffold_18 + retained_exons 5985192-5985311 asmbl_20641,asmbl_20646 scaffold_18 + intron_skips_exon 5984775-5987240 asmbl_20638,asmbl_20642 // Retained and Spliced Intron # retained_intron 5984775-5985191 (orient:+) max_ev_support = 1 # spliced_intron 5984775-5985191 (orient:+) max_ev_support = 2 scaffold_18 + intron 5984775-5985191 asmbl_20641,asmbl_20646 scaffold_18 + retained_intron 5984775-5985191 asmbl_20644,asmbl_20645 // Retained and Spliced Intron # retained_intron 5990415-5990661 (orient:+) max_ev_support = 1 # spliced_intron 5990415-5990661 (orient:+) max_ev_support = 2 scaffold_18 + intron 5990415-5990661 asmbl_20638,asmbl_20641,asmbl_20642,asmbl_20646 scaffold_18 + retained_intron 5990415-5990661 asmbl_20647 // Retained and Spliced Intron # retained_intron 6005536-6006129 (orient:+) max_ev_support = 2 # spliced_intron 6005536-6006129 (orient:+) max_ev_support = 2 scaffold_18 + intron 6005536-6006129 asmbl_20654,asmbl_20659 scaffold_18 + retained_intron 6005536-6006129 asmbl_20656 // Retained and Spliced Intron # retained_intron 6009520-6009771 (orient:+) max_ev_support = 1 # spliced_intron 6009520-6009771 (orient:+) max_ev_support = 2 scaffold_18 + intron 6009520-6009771 asmbl_20654,asmbl_20656 scaffold_18 + retained_intron 6009520-6009771 asmbl_20659 // Exon Skipping and Retention # skipped_exon 6269946-6270567 (orient:+) max_ev_support = 2 # retained_exon 6270108-6270145 (orient:+) max_ev_support = 3 scaffold_18 + retained_exons 6270108-6270145 asmbl_20665 scaffold_18 + intron_skips_exon 6269946-6270567 asmbl_20666 // Retained and Spliced Intron # retained_intron 6294324-6294450 (orient:+) max_ev_support = 3 # spliced_intron 6294324-6294450 (orient:+) max_ev_support = 2 scaffold_18 + intron 6294324-6294450 asmbl_20668 scaffold_18 + retained_intron 6294324-6294450 asmbl_20667 // Retained and Spliced Intron # retained_intron 6423799-6424289 (orient:+) max_ev_support = 4 # spliced_intron 6423799-6424289 (orient:+) max_ev_support = 3 scaffold_18 + intron 6423799-6424289 asmbl_20675 scaffold_18 + retained_intron 6423799-6424289 asmbl_20674 // Retained and Spliced Intron # retained_intron 6425925-6426952 (orient:+) max_ev_support = 3 # spliced_intron 6425925-6426952 (orient:+) max_ev_support = 3 scaffold_18 + intron 6425925-6426952 asmbl_20675 scaffold_18 + retained_intron 6425925-6426952 asmbl_20674 // Retained and Spliced Intron # retained_intron 6425016-6425279 (orient:+) max_ev_support = 2 # spliced_intron 6425016-6425279 (orient:+) max_ev_support = 3 scaffold_18 + intron 6425016-6425279 asmbl_20674,asmbl_20675 scaffold_18 + retained_intron 6425016-6425279 asmbl_20676 // Retained and Spliced Intron # retained_intron 6859375-6859476 (orient:+) max_ev_support = 2 # spliced_intron 6859375-6859476 (orient:+) max_ev_support = 2 scaffold_18 + intron 6859375-6859476 asmbl_20685 scaffold_18 + retained_intron 6859375-6859476 asmbl_20686 // Exon Skipping and Retention # skipped_exon 6901687-6902245 (orient:+) max_ev_support = 2 # retained_exon 6901792-6901898 (orient:+) max_ev_support = 2 scaffold_18 + retained_exons 6901792-6901898 asmbl_20688 scaffold_18 + intron_skips_exon 6901687-6902245 asmbl_20689 // Exon Skipping and Retention # skipped_exon 7169403-7169698 (orient:+) max_ev_support = 2 # retained_exon 7169511-7169613 (orient:+) max_ev_support = 3 scaffold_18 + retained_exons 7169511-7169613 asmbl_20708 scaffold_18 + intron_skips_exon 7169403-7169698 asmbl_20710 // Exon Skipping and Retention # skipped_exon 7228357-7231127 (orient:+) max_ev_support = 2 # retained_exon 7229478-7229525 (orient:+) max_ev_support = 3 scaffold_18 + retained_exons 7229478-7229525 asmbl_20722,asmbl_20723 scaffold_18 + intron_skips_exon 7228357-7231127 asmbl_20725 // Exon Skipping and Retention # skipped_exon 7241529-7241972 (orient:+) max_ev_support = 2 # retained_exon 7241822-7241881 (orient:+) max_ev_support = 2 scaffold_18 + retained_exons 7241822-7241881 asmbl_20729 scaffold_18 + intron_skips_exon 7241529-7241972 asmbl_20730 // Retained and Spliced Intron # retained_intron 7648011-7649078 (orient:+) max_ev_support = 3 # spliced_intron 7648011-7649078 (orient:+) max_ev_support = 1 scaffold_18 + intron 7648011-7649078 asmbl_20756 scaffold_18 + retained_intron 7648011-7649078 asmbl_20755,asmbl_20757 // Retained and Spliced Intron # retained_intron 7653749-7654074 (orient:+) max_ev_support = 2 # spliced_intron 7653749-7654074 (orient:+) max_ev_support = 3 scaffold_18 + intron 7653749-7654074 asmbl_20759 scaffold_18 + retained_intron 7653749-7654074 asmbl_20760 // Retained and Spliced Intron # retained_intron 7661288-7661516 (orient:+) max_ev_support = 1 # spliced_intron 7661288-7661516 (orient:+) max_ev_support = 1 scaffold_18 + intron 7661288-7661516 asmbl_20764,asmbl_20765,asmbl_20767,asmbl_20768 scaffold_18 + retained_intron 7661288-7661516 asmbl_20763,asmbl_20766 // Retained and Spliced Intron # retained_intron 7662032-7662196 (orient:+) max_ev_support = 1 # spliced_intron 7662032-7662196 (orient:+) max_ev_support = 1 scaffold_18 + intron 7662032-7662196 asmbl_20766 scaffold_18 + retained_intron 7662032-7662196 asmbl_20763,asmbl_20770 // Retained and Spliced Intron # retained_intron 7662113-7662196 (orient:+) max_ev_support = 1 # spliced_intron 7662113-7662196 (orient:+) max_ev_support = 1 scaffold_18 + intron 7662113-7662196 asmbl_20764,asmbl_20765,asmbl_20767,asmbl_20769 scaffold_18 + retained_intron 7662113-7662196 asmbl_20763,asmbl_20768,asmbl_20770 // Retained and Spliced Intron # retained_intron 7662268-7663046 (orient:+) max_ev_support = 1 # spliced_intron 7662268-7663046 (orient:+) max_ev_support = 1 scaffold_18 + intron 7662268-7663046 asmbl_20764 scaffold_18 + retained_intron 7662268-7663046 asmbl_20763,asmbl_20765,asmbl_20766,asmbl_20767,asmbl_20768,asmbl_20769,asmbl_20770 // Retained and Spliced Intron # retained_intron 7682382-7682466 (orient:+) max_ev_support = 2 # spliced_intron 7682382-7682466 (orient:+) max_ev_support = 1 scaffold_18 + intron 7682382-7682466 asmbl_20786 scaffold_18 + retained_intron 7682382-7682466 asmbl_20774,asmbl_20780,asmbl_20781,asmbl_20784,asmbl_20785 // Retained and Spliced Intron # retained_intron 7686295-7686459 (orient:+) max_ev_support = 3 # spliced_intron 7686295-7686459 (orient:+) max_ev_support = 2 scaffold_18 + intron 7686295-7686459 asmbl_20777,asmbl_20778,asmbl_20780,asmbl_20782,asmbl_20783,asmbl_20784,asmbl_20785,asmbl_20786 scaffold_18 + retained_intron 7686295-7686459 asmbl_20774,asmbl_20775,asmbl_20776 // Retained and Spliced Intron # retained_intron 7686561-7686708 (orient:+) max_ev_support = 3 # spliced_intron 7686561-7686708 (orient:+) max_ev_support = 1 scaffold_18 + intron 7686561-7686708 asmbl_20783,asmbl_20785 scaffold_18 + retained_intron 7686561-7686708 asmbl_20774,asmbl_20775,asmbl_20776,asmbl_20782,asmbl_20784 // Retained and Spliced Intron # retained_intron 7686561-7686884 (orient:+) max_ev_support = 3 # spliced_intron 7686561-7686884 (orient:+) max_ev_support = 2 scaffold_18 + intron 7686561-7686884 asmbl_20777,asmbl_20778,asmbl_20780,asmbl_20786 scaffold_18 + retained_intron 7686561-7686884 asmbl_20774,asmbl_20775,asmbl_20776,asmbl_20782,asmbl_20784 // Retained and Spliced Intron # retained_intron 7686792-7686884 (orient:+) max_ev_support = 3 # spliced_intron 7686792-7686884 (orient:+) max_ev_support = 1 scaffold_18 + intron 7686792-7686884 asmbl_20783,asmbl_20785 scaffold_18 + retained_intron 7686792-7686884 asmbl_20774,asmbl_20775,asmbl_20776,asmbl_20782,asmbl_20784 // Exon Skipping and Retention # skipped_exon 7686561-7686884 (orient:+) max_ev_support = 2 # retained_exon 7686709-7686791 (orient:+) max_ev_support = 1 scaffold_18 + retained_exons 7686709-7686791 asmbl_20783,asmbl_20785 scaffold_18 + intron_skips_exon 7686561-7686884 asmbl_20777,asmbl_20778,asmbl_20780,asmbl_20786 // Retained and Spliced Intron # retained_intron 7867463-7867646 (orient:+) max_ev_support = 3 # spliced_intron 7867463-7867646 (orient:+) max_ev_support = 3 scaffold_18 + intron 7867463-7867646 asmbl_20799,asmbl_20800,asmbl_20801,asmbl_20802,asmbl_20803,asmbl_20804,asmbl_20808 scaffold_18 + retained_intron 7867463-7867646 asmbl_20798,asmbl_20806,asmbl_20807 // Retained and Spliced Intron # retained_intron 7867713-7867862 (orient:+) max_ev_support = 3 # spliced_intron 7867713-7867862 (orient:+) max_ev_support = 3 scaffold_18 + intron 7867713-7867862 asmbl_20801,asmbl_20802,asmbl_20808 scaffold_18 + retained_intron 7867713-7867862 asmbl_20798,asmbl_20803,asmbl_20806,asmbl_20807 // Retained and Spliced Intron # retained_intron 7867750-7867862 (orient:+) max_ev_support = 3 # spliced_intron 7867750-7867862 (orient:+) max_ev_support = 3 scaffold_18 + intron 7867750-7867862 asmbl_20799,asmbl_20800,asmbl_20804 scaffold_18 + retained_intron 7867750-7867862 asmbl_20798,asmbl_20803,asmbl_20806,asmbl_20807 // Retained and Spliced Intron # retained_intron 7867916-7867988 (orient:+) max_ev_support = 3 # spliced_intron 7867916-7867988 (orient:+) max_ev_support = 3 scaffold_18 + intron 7867916-7867988 asmbl_20800,asmbl_20801,asmbl_20804 scaffold_18 + retained_intron 7867916-7867988 asmbl_20798,asmbl_20799,asmbl_20802,asmbl_20803,asmbl_20806,asmbl_20807,asmbl_20808 // Retained and Spliced Intron # retained_intron 7868121-7868317 (orient:+) max_ev_support = 4 # spliced_intron 7868121-7868317 (orient:+) max_ev_support = 3 scaffold_18 + intron 7868121-7868317 asmbl_20799,asmbl_20800,asmbl_20801,asmbl_20803,asmbl_20806,asmbl_20807,asmbl_20808 scaffold_18 + retained_intron 7868121-7868317 asmbl_20798 // Exon Skipping and Retention # skipped_exon 8399580-8401325 (orient:+) max_ev_support = 1 # retained_exon 8400470-8400594 (orient:+) max_ev_support = 2 scaffold_18 + retained_exons 8400470-8400594 asmbl_20831 scaffold_18 + intron_skips_exon 8399580-8401325 asmbl_20834,asmbl_20836,asmbl_20837,asmbl_20839 // Exon Skipping and Retention # skipped_exon 8400595-8401901 (orient:+) max_ev_support = 2 # retained_exon 8401326-8401453 (orient:+) max_ev_support = 1 scaffold_18 + retained_exons 8401326-8401453 asmbl_20834,asmbl_20837,asmbl_20839 scaffold_18 + intron_skips_exon 8400595-8401901 asmbl_20831 // Retained and Spliced Intron # retained_intron 8399580-8400469 (orient:+) max_ev_support = 1 # spliced_intron 8399580-8400469 (orient:+) max_ev_support = 2 scaffold_18 + intron 8399580-8400469 asmbl_20831 scaffold_18 + retained_intron 8399580-8400469 asmbl_20835,asmbl_20838 // Retained and Spliced Intron # retained_intron 8399580-8401325 (orient:+) max_ev_support = 1 # spliced_intron 8399580-8401325 (orient:+) max_ev_support = 1 scaffold_18 + intron 8399580-8401325 asmbl_20834,asmbl_20836,asmbl_20837,asmbl_20839 scaffold_18 + retained_intron 8399580-8401325 asmbl_20835,asmbl_20838 // Retained and Spliced Intron # retained_intron 8400595-8401901 (orient:+) max_ev_support = 1 # spliced_intron 8400595-8401901 (orient:+) max_ev_support = 2 scaffold_18 + intron 8400595-8401901 asmbl_20831 scaffold_18 + retained_intron 8400595-8401901 asmbl_20835,asmbl_20838 // Retained and Spliced Intron # retained_intron 8401454-8401901 (orient:+) max_ev_support = 1 # spliced_intron 8401454-8401901 (orient:+) max_ev_support = 1 scaffold_18 + intron 8401454-8401901 asmbl_20834,asmbl_20837,asmbl_20839 scaffold_18 + retained_intron 8401454-8401901 asmbl_20835,asmbl_20836,asmbl_20838 // Retained and Spliced Intron # retained_intron 8726003-8726179 (orient:+) max_ev_support = 2 # spliced_intron 8726003-8726179 (orient:+) max_ev_support = 2 scaffold_18 + intron 8726003-8726179 asmbl_20857,asmbl_20862 scaffold_18 + retained_intron 8726003-8726179 asmbl_20858,asmbl_20861 // Retained and Spliced Intron # retained_intron 8726003-8726193 (orient:+) max_ev_support = 2 # spliced_intron 8726003-8726193 (orient:+) max_ev_support = 2 scaffold_18 + intron 8726003-8726193 asmbl_20859,asmbl_20863 scaffold_18 + retained_intron 8726003-8726193 asmbl_20858,asmbl_20861 // Retained and Spliced Intron # retained_intron 8726290-8726425 (orient:+) max_ev_support = 2 # spliced_intron 8726290-8726425 (orient:+) max_ev_support = 2 scaffold_18 + intron 8726290-8726425 asmbl_20857,asmbl_20858,asmbl_20859,asmbl_20862,asmbl_20863 scaffold_18 + retained_intron 8726290-8726425 asmbl_20860,asmbl_20861 // Retained and Spliced Intron # retained_intron 8726455-8726561 (orient:+) max_ev_support = 2 # spliced_intron 8726455-8726561 (orient:+) max_ev_support = 2 scaffold_18 + intron 8726455-8726561 asmbl_20857,asmbl_20858,asmbl_20859,asmbl_20862 scaffold_18 + retained_intron 8726455-8726561 asmbl_20860,asmbl_20861,asmbl_20863 // Retained and Spliced Intron # retained_intron 8726889-8727002 (orient:+) max_ev_support = 1 # spliced_intron 8726889-8727002 (orient:+) max_ev_support = 2 scaffold_18 + intron 8726889-8727002 asmbl_20857,asmbl_20858,asmbl_20859,asmbl_20861 scaffold_18 + retained_intron 8726889-8727002 asmbl_20862 // Retained and Spliced Intron # retained_intron 9164378-9164478 (orient:+) max_ev_support = 2 # spliced_intron 9164378-9164478 (orient:+) max_ev_support = 3 scaffold_18 + intron 9164378-9164478 asmbl_20875 scaffold_18 + retained_intron 9164378-9164478 asmbl_20876 // Exon Skipping and Retention # skipped_exon 9168049-9170424 (orient:+) max_ev_support = 3 # retained_exon 9169889-9170255 (orient:+) max_ev_support = 3 scaffold_18 + retained_exons 9169889-9170005,9170109-9170255 asmbl_20879 scaffold_18 + intron_skips_exon 9168049-9170424 asmbl_20878,asmbl_20881 // Retained and Spliced Intron # retained_intron 9170256-9170424 (orient:+) max_ev_support = 2 # spliced_intron 9170256-9170424 (orient:+) max_ev_support = 3 scaffold_18 + intron 9170256-9170424 asmbl_20879 scaffold_18 + retained_intron 9170256-9170424 asmbl_20880 // Exon Skipping and Retention # skipped_exon 9788963-9790028 (orient:+) max_ev_support = 1 # retained_exon 9789245-9789346 (orient:+) max_ev_support = 1 scaffold_18 + retained_exons 9789245-9789346 asmbl_20893 scaffold_18 + intron_skips_exon 9788963-9790028 asmbl_20892,asmbl_20894 // Exon Skipping and Retention # skipped_exon 10128612-10130396 (orient:+) max_ev_support = 1 # retained_exon 10129688-10129978 (orient:+) max_ev_support = 2 scaffold_18 + retained_exons 10129688-10129978 asmbl_20902 scaffold_18 + intron_skips_exon 10128612-10130396 asmbl_20903,asmbl_20904 // Retained and Spliced Intron # retained_intron 10447970-10448099 (orient:+) max_ev_support = 2 # spliced_intron 10447970-10448099 (orient:+) max_ev_support = 2 scaffold_18 + intron 10447970-10448099 asmbl_20925 scaffold_18 + retained_intron 10447970-10448099 asmbl_20924 // Retained and Spliced Intron # retained_intron 11328359-11328484 (orient:+) max_ev_support = 2 # spliced_intron 11328359-11328484 (orient:+) max_ev_support = 2 scaffold_18 + intron 11328359-11328484 asmbl_20940,asmbl_20942,asmbl_20943 scaffold_18 + retained_intron 11328359-11328484 asmbl_20939 // Retained and Spliced Intron # retained_intron 11328837-11329142 (orient:+) max_ev_support = 1 # spliced_intron 11328837-11329142 (orient:+) max_ev_support = 2 scaffold_18 + intron 11328837-11329142 asmbl_20940,asmbl_20942,asmbl_20943 scaffold_18 + retained_intron 11328837-11329142 asmbl_20939 // Retained and Spliced Intron # retained_intron 11326733-11326957 (orient:+) max_ev_support = 2 # spliced_intron 11326733-11326957 (orient:+) max_ev_support = 1 scaffold_18 + intron 11326733-11326957 asmbl_20943 scaffold_18 + retained_intron 11326733-11326957 asmbl_20940,asmbl_20942 // Retained and Spliced Intron # retained_intron 11327584-11327791 (orient:+) max_ev_support = 2 # spliced_intron 11327584-11327791 (orient:+) max_ev_support = 1 scaffold_18 + intron 11327584-11327791 asmbl_20942,asmbl_20943 scaffold_18 + retained_intron 11327584-11327791 asmbl_20940 // Retained and Spliced Intron # retained_intron 11329326-11329551 (orient:+) max_ev_support = 2 # spliced_intron 11329326-11329551 (orient:+) max_ev_support = 2 scaffold_18 + intron 11329326-11329551 asmbl_20939,asmbl_20940,asmbl_20942,asmbl_20943 scaffold_18 + retained_intron 11329326-11329551 asmbl_20941 // Retained and Spliced Intron # retained_intron 11472870-11472947 (orient:+) max_ev_support = 3 # spliced_intron 11472870-11472947 (orient:+) max_ev_support = 2 scaffold_18 + intron 11472870-11472947 asmbl_20945 scaffold_18 + retained_intron 11472870-11472947 asmbl_20944 // Exon Skipping and Retention # skipped_exon 11912305-11913975 (orient:+) max_ev_support = 1 # retained_exon 11912892-11912993 (orient:+) max_ev_support = 2 scaffold_18 + retained_exons 11912892-11912993 asmbl_20955 scaffold_18 + intron_skips_exon 11912305-11913975 asmbl_20956 // Exon Skipping and Retention # skipped_exon 11912994-11914248 (orient:+) max_ev_support = 2 # retained_exon 11913976-11914077 (orient:+) max_ev_support = 1 scaffold_18 + retained_exons 11913976-11914077 asmbl_20956 scaffold_18 + intron_skips_exon 11912994-11914248 asmbl_20955 // Exon Skipping and Retention # skipped_exon 12935267-12935549 (orient:+) max_ev_support = 1 # retained_exon 12935380-12935438 (orient:+) max_ev_support = 1 scaffold_18 + retained_exons 12935380-12935438 asmbl_20980 scaffold_18 + intron_skips_exon 12935267-12935549 asmbl_20981 // Retained and Spliced Intron # retained_intron 13033293-13033322 (orient:+) max_ev_support = 1 # spliced_intron 13033293-13033322 (orient:+) max_ev_support = 1 scaffold_18 + intron 13033293-13033322 asmbl_20989 scaffold_18 + retained_intron 13033293-13033322 asmbl_20990 // Exon Skipping and Retention # skipped_exon 13113219-13113865 (orient:+) max_ev_support = 2 # retained_exon 13113652-13113777 (orient:+) max_ev_support = 2 scaffold_18 + retained_exons 13113652-13113777 asmbl_20993,asmbl_20994 scaffold_18 + intron_skips_exon 13113219-13113865 asmbl_20992,asmbl_20995 // Exon Skipping and Retention # skipped_exon 13267632-13268828 (orient:+) max_ev_support = 2 # retained_exon 13268341-13268520 (orient:+) max_ev_support = 2 scaffold_18 + retained_exons 13268341-13268520 asmbl_21006 scaffold_18 + intron_skips_exon 13267632-13268828 asmbl_21005 // Retained and Spliced Intron # retained_intron 13649242-13649267 (orient:+) max_ev_support = 1 # spliced_intron 13649242-13649267 (orient:+) max_ev_support = 1 scaffold_18 + intron 13649242-13649267 asmbl_21031 scaffold_18 + retained_intron 13649242-13649267 asmbl_21030 // Retained and Spliced Intron # retained_intron 13649190-13649215 (orient:+) max_ev_support = 1 # spliced_intron 13649190-13649215 (orient:+) max_ev_support = 1 scaffold_18 + intron 13649190-13649215 asmbl_21030 scaffold_18 + retained_intron 13649190-13649215 asmbl_21031 // Retained and Spliced Intron # retained_intron 13804460-13804704 (orient:+) max_ev_support = 2 # spliced_intron 13804460-13804704 (orient:+) max_ev_support = 3 scaffold_18 + intron 13804460-13804704 asmbl_21036,asmbl_21037,asmbl_21040 scaffold_18 + retained_intron 13804460-13804704 asmbl_21038,asmbl_21041 // Retained and Spliced Intron # retained_intron 13805940-13806190 (orient:+) max_ev_support = 1 # spliced_intron 13805940-13806190 (orient:+) max_ev_support = 3 scaffold_18 + intron 13805940-13806190 asmbl_21036,asmbl_21038 scaffold_18 + retained_intron 13805940-13806190 asmbl_21040,asmbl_21041 // Retained and Spliced Intron # retained_intron 8526-8631 (orient:+) max_ev_support = 1 # spliced_intron 8526-8631 (orient:+) max_ev_support = 1 scaffold_19 + intron 8526-8631 asmbl_21167 scaffold_19 + retained_intron 8526-8631 asmbl_21168 // Retained and Spliced Intron # retained_intron 30998-31076 (orient:+) max_ev_support = 2 # spliced_intron 30998-31076 (orient:+) max_ev_support = 3 scaffold_19 + intron 30998-31076 asmbl_21169 scaffold_19 + retained_intron 30998-31076 asmbl_21170 // Retained and Spliced Intron # retained_intron 165632-165684 (orient:+) max_ev_support = 3 # spliced_intron 165632-165684 (orient:+) max_ev_support = 1 scaffold_19 + intron 165632-165684 asmbl_21180 scaffold_19 + retained_intron 165632-165684 asmbl_21179 // Retained and Spliced Intron # retained_intron 678886-678963 (orient:+) max_ev_support = 2 # spliced_intron 678886-678963 (orient:+) max_ev_support = 2 scaffold_19 + intron 678886-678963 asmbl_21199 scaffold_19 + retained_intron 678886-678963 asmbl_21201 // Retained and Spliced Intron # retained_intron 678886-678974 (orient:+) max_ev_support = 2 # spliced_intron 678886-678974 (orient:+) max_ev_support = 1 scaffold_19 + intron 678886-678974 asmbl_21202 scaffold_19 + retained_intron 678886-678974 asmbl_21201 // Retained and Spliced Intron # retained_intron 810594-810631 (orient:+) max_ev_support = 1 # spliced_intron 810594-810631 (orient:+) max_ev_support = 1 scaffold_19 + intron 810594-810631 asmbl_21211 scaffold_19 + retained_intron 810594-810631 asmbl_21212 // Exon Skipping and Retention # skipped_exon 857538-858547 (orient:+) max_ev_support = 2 # retained_exon 857705-858188 (orient:+) max_ev_support = 2 scaffold_19 + retained_exons 857705-857861,857988-858188 asmbl_21218 scaffold_19 + intron_skips_exon 857538-858547 asmbl_21217,asmbl_21220 // Exon Skipping and Retention # skipped_exon 857538-858547 (orient:+) max_ev_support = 2 # retained_exon 857705-858401 (orient:+) max_ev_support = 1 scaffold_19 + retained_exons 857705-857861,857988-858401 asmbl_21219 scaffold_19 + intron_skips_exon 857538-858547 asmbl_21217,asmbl_21220 // Retained and Spliced Intron # retained_intron 1038554-1038594 (orient:+) max_ev_support = 2 # spliced_intron 1038554-1038594 (orient:+) max_ev_support = 1 scaffold_19 + intron 1038554-1038594 asmbl_21229 scaffold_19 + retained_intron 1038554-1038594 asmbl_21231 // Retained and Spliced Intron # retained_intron 1504585-1504605 (orient:+) max_ev_support = 2 # spliced_intron 1504585-1504605 (orient:+) max_ev_support = 1 scaffold_19 + intron 1504585-1504605 asmbl_21246 scaffold_19 + retained_intron 1504585-1504605 asmbl_21242,asmbl_21243,asmbl_21244,asmbl_21245 // Retained and Spliced Intron # retained_intron 1504648-1504857 (orient:+) max_ev_support = 4 # spliced_intron 1504648-1504857 (orient:+) max_ev_support = 2 scaffold_19 + intron 1504648-1504857 asmbl_21245 scaffold_19 + retained_intron 1504648-1504857 asmbl_21242,asmbl_21243,asmbl_21244,asmbl_21246 // Retained and Spliced Intron # retained_intron 1508758-1509326 (orient:+) max_ev_support = 3 # spliced_intron 1508758-1509326 (orient:+) max_ev_support = 2 scaffold_19 + intron 1508758-1509326 asmbl_21242,asmbl_21244,asmbl_21245,asmbl_21246 scaffold_19 + retained_intron 1508758-1509326 asmbl_21243 // Retained and Spliced Intron # retained_intron 2348182-2348361 (orient:+) max_ev_support = 2 # spliced_intron 2348182-2348361 (orient:+) max_ev_support = 2 scaffold_19 + intron 2348182-2348361 asmbl_21262 scaffold_19 + retained_intron 2348182-2348361 asmbl_21261 // Retained and Spliced Intron # retained_intron 2649578-2649708 (orient:+) max_ev_support = 1 # spliced_intron 2649578-2649708 (orient:+) max_ev_support = 2 scaffold_19 + intron 2649578-2649708 asmbl_21267 scaffold_19 + retained_intron 2649578-2649708 asmbl_21269 // Retained and Spliced Intron # retained_intron 2696720-2696863 (orient:+) max_ev_support = 1 # spliced_intron 2696720-2696863 (orient:+) max_ev_support = 1 scaffold_19 + intron 2696720-2696863 asmbl_21273 scaffold_19 + retained_intron 2696720-2696863 asmbl_21272 // Exon Skipping and Retention # skipped_exon 2780544-2780920 (orient:+) max_ev_support = 1 # retained_exon 2780749-2780818 (orient:+) max_ev_support = 1 scaffold_19 + retained_exons 2780749-2780818 asmbl_21276,asmbl_21280 scaffold_19 + intron_skips_exon 2780544-2780920 asmbl_21278 // Retained and Spliced Intron # retained_intron 2780819-2780920 (orient:+) max_ev_support = 2 # spliced_intron 2780819-2780920 (orient:+) max_ev_support = 1 scaffold_19 + intron 2780819-2780920 asmbl_21276,asmbl_21280,asmbl_21282 scaffold_19 + retained_intron 2780819-2780920 asmbl_21277,asmbl_21279,asmbl_21281 // Retained and Spliced Intron # retained_intron 2781526-2781716 (orient:+) max_ev_support = 1 # spliced_intron 2781526-2781716 (orient:+) max_ev_support = 1 scaffold_19 + intron 2781526-2781716 asmbl_21276,asmbl_21277,asmbl_21278,asmbl_21281,asmbl_21282 scaffold_19 + retained_intron 2781526-2781716 asmbl_21280 // Retained and Spliced Intron # retained_intron 2917569-2917600 (orient:+) max_ev_support = 1 # spliced_intron 2917569-2917600 (orient:+) max_ev_support = 1 scaffold_19 + intron 2917569-2917600 asmbl_21291 scaffold_19 + retained_intron 2917569-2917600 asmbl_21292 // Retained and Spliced Intron # retained_intron 3207630-3207699 (orient:+) max_ev_support = 2 # spliced_intron 3207630-3207699 (orient:+) max_ev_support = 2 scaffold_19 + intron 3207630-3207699 asmbl_21309 scaffold_19 + retained_intron 3207630-3207699 asmbl_21310 // Retained and Spliced Intron # retained_intron 3516757-3516831 (orient:+) max_ev_support = 1 # spliced_intron 3516757-3516831 (orient:+) max_ev_support = 1 scaffold_19 + intron 3516757-3516831 asmbl_21322 scaffold_19 + retained_intron 3516757-3516831 asmbl_21323 // Exon Skipping and Retention # skipped_exon 3557450-3558114 (orient:+) max_ev_support = 1 # retained_exon 3557631-3557817 (orient:+) max_ev_support = 1 scaffold_19 + retained_exons 3557631-3557817 asmbl_21326,asmbl_21327,asmbl_21328,asmbl_21331 scaffold_19 + intron_skips_exon 3557450-3558114 asmbl_21329 // Retained and Spliced Intron # retained_intron 3559309-3561160 (orient:+) max_ev_support = 7 # spliced_intron 3559309-3561160 (orient:+) max_ev_support = 1 scaffold_19 + intron 3559309-3561160 asmbl_21331 scaffold_19 + retained_intron 3559309-3561160 asmbl_21326,asmbl_21327 // Retained and Spliced Intron # retained_intron 3560904-3561075 (orient:+) max_ev_support = 5 # spliced_intron 3560904-3561075 (orient:+) max_ev_support = 1 scaffold_19 + intron 3560904-3561075 asmbl_21328,asmbl_21329 scaffold_19 + retained_intron 3560904-3561075 asmbl_21326,asmbl_21327 // Exon Skipping and Retention # skipped_exon 3683129-3683854 (orient:+) max_ev_support = 1 # retained_exon 3683433-3683525 (orient:+) max_ev_support = 1 scaffold_19 + retained_exons 3683433-3683525 asmbl_21332 scaffold_19 + intron_skips_exon 3683129-3683854 asmbl_21333,asmbl_21334 // Exon Skipping and Retention # skipped_exon 3682622-3683432 (orient:+) max_ev_support = 1 # retained_exon 3683036-3683128 (orient:+) max_ev_support = 1 scaffold_19 + retained_exons 3683036-3683128 asmbl_21333,asmbl_21334 scaffold_19 + intron_skips_exon 3682622-3683432 asmbl_21332 // Exon Skipping and Retention # skipped_exon 3684104-3684940 (orient:+) max_ev_support = 1 # retained_exon 3684358-3684556 (orient:+) max_ev_support = 1 scaffold_19 + retained_exons 3684358-3684556 asmbl_21333,asmbl_21337 scaffold_19 + intron_skips_exon 3684104-3684940 asmbl_21332,asmbl_21334,asmbl_21336 // Retained and Spliced Intron # retained_intron 3683526-3683854 (orient:+) max_ev_support = 1 # spliced_intron 3683526-3683854 (orient:+) max_ev_support = 1 scaffold_19 + intron 3683526-3683854 asmbl_21332,asmbl_21336 scaffold_19 + retained_intron 3683526-3683854 asmbl_21335,asmbl_21337 // Retained and Spliced Intron # retained_intron 3684557-3684940 (orient:+) max_ev_support = 1 # spliced_intron 3684557-3684940 (orient:+) max_ev_support = 1 scaffold_19 + intron 3684557-3684940 asmbl_21333,asmbl_21337 scaffold_19 + retained_intron 3684557-3684940 asmbl_21335 // Retained and Spliced Intron # retained_intron 5155129-5155211 (orient:+) max_ev_support = 2 # spliced_intron 5155129-5155211 (orient:+) max_ev_support = 2 scaffold_19 + intron 5155129-5155211 asmbl_21355 scaffold_19 + retained_intron 5155129-5155211 asmbl_21356,asmbl_21357,asmbl_21358 // Retained and Spliced Intron # retained_intron 5155289-5155500 (orient:+) max_ev_support = 2 # spliced_intron 5155289-5155500 (orient:+) max_ev_support = 2 scaffold_19 + intron 5155289-5155500 asmbl_21357 scaffold_19 + retained_intron 5155289-5155500 asmbl_21356 // Retained and Spliced Intron # retained_intron 5155289-5155678 (orient:+) max_ev_support = 2 # spliced_intron 5155289-5155678 (orient:+) max_ev_support = 2 scaffold_19 + intron 5155289-5155678 asmbl_21355,asmbl_21358 scaffold_19 + retained_intron 5155289-5155678 asmbl_21356 // Retained and Spliced Intron # retained_intron 5197616-5197930 (orient:+) max_ev_support = 2 # spliced_intron 5197616-5197930 (orient:+) max_ev_support = 2 scaffold_19 + intron 5197616-5197930 asmbl_21363 scaffold_19 + retained_intron 5197616-5197930 asmbl_21362 // Exon Skipping and Retention # skipped_exon 5372937-5373632 (orient:+) max_ev_support = 1 # retained_exon 5373273-5373362 (orient:+) max_ev_support = 2 scaffold_19 + retained_exons 5373273-5373362 asmbl_21369 scaffold_19 + intron_skips_exon 5372937-5373632 asmbl_21370 // Retained and Spliced Intron # retained_intron 5461618-5461705 (orient:+) max_ev_support = 2 # spliced_intron 5461618-5461705 (orient:+) max_ev_support = 1 scaffold_19 + intron 5461618-5461705 asmbl_21377 scaffold_19 + retained_intron 5461618-5461705 asmbl_21374 // Retained and Spliced Intron # retained_intron 5463673-5463985 (orient:+) max_ev_support = 1 # spliced_intron 5463673-5463985 (orient:+) max_ev_support = 2 scaffold_19 + intron 5463673-5463985 asmbl_21373,asmbl_21377 scaffold_19 + retained_intron 5463673-5463985 asmbl_21376 // Retained and Spliced Intron # retained_intron 5464093-5464178 (orient:+) max_ev_support = 2 # spliced_intron 5464093-5464178 (orient:+) max_ev_support = 2 scaffold_19 + intron 5464093-5464178 asmbl_21373,asmbl_21377,asmbl_21378 scaffold_19 + retained_intron 5464093-5464178 asmbl_21376 // Exon Skipping and Retention # skipped_exon 5461618-5462863 (orient:+) max_ev_support = 2 # retained_exon 5461706-5461769 (orient:+) max_ev_support = 1 scaffold_19 + retained_exons 5461706-5461769 asmbl_21377 scaffold_19 + intron_skips_exon 5461618-5462863 asmbl_21373 // Retained and Spliced Intron # retained_intron 5594710-5594731 (orient:+) max_ev_support = 2 # spliced_intron 5594710-5594731 (orient:+) max_ev_support = 1 scaffold_19 + intron 5594710-5594731 asmbl_21384 scaffold_19 + retained_intron 5594710-5594731 asmbl_21383 // Retained and Spliced Intron # retained_intron 6213363-6213442 (orient:+) max_ev_support = 1 # spliced_intron 6213363-6213442 (orient:+) max_ev_support = 2 scaffold_19 + intron 6213363-6213442 asmbl_21398 scaffold_19 + retained_intron 6213363-6213442 asmbl_21402 // Retained and Spliced Intron # retained_intron 6213363-6213463 (orient:+) max_ev_support = 1 # spliced_intron 6213363-6213463 (orient:+) max_ev_support = 2 scaffold_19 + intron 6213363-6213463 asmbl_21400 scaffold_19 + retained_intron 6213363-6213463 asmbl_21402 // Retained and Spliced Intron # retained_intron 6213363-6213529 (orient:+) max_ev_support = 1 # spliced_intron 6213363-6213529 (orient:+) max_ev_support = 2 scaffold_19 + intron 6213363-6213529 asmbl_21399 scaffold_19 + retained_intron 6213363-6213529 asmbl_21402 // Exon Skipping and Retention # skipped_exon 6255614-6257998 (orient:+) max_ev_support = 1 # retained_exon 6257255-6257617 (orient:+) max_ev_support = 2 scaffold_19 + retained_exons 6257255-6257360,6257467-6257617 asmbl_21404 scaffold_19 + intron_skips_exon 6255614-6257998 asmbl_21405 // Retained and Spliced Intron # retained_intron 7364545-7364696 (orient:+) max_ev_support = 2 # spliced_intron 7364545-7364696 (orient:+) max_ev_support = 2 scaffold_19 + intron 7364545-7364696 asmbl_21451 scaffold_19 + retained_intron 7364545-7364696 asmbl_21450 // Retained and Spliced Intron # retained_intron 7466932-7467251 (orient:+) max_ev_support = 2 # spliced_intron 7466932-7467251 (orient:+) max_ev_support = 2 scaffold_19 + intron 7466932-7467251 asmbl_21457 scaffold_19 + retained_intron 7466932-7467251 asmbl_21458 // Exon Skipping and Retention # skipped_exon 7703094-7703985 (orient:+) max_ev_support = 1 # retained_exon 7703845-7703874 (orient:+) max_ev_support = 3 scaffold_19 + retained_exons 7703845-7703874 asmbl_21488,asmbl_21489,asmbl_21491 scaffold_19 + intron_skips_exon 7703094-7703985 asmbl_21492 // Retained and Spliced Intron # retained_intron 7701981-7702197 (orient:+) max_ev_support = 1 # spliced_intron 7701981-7702197 (orient:+) max_ev_support = 2 scaffold_19 + intron 7701981-7702197 asmbl_21488,asmbl_21489,asmbl_21492 scaffold_19 + retained_intron 7701981-7702197 asmbl_21491 // Retained and Spliced Intron # retained_intron 7702234-7702855 (orient:+) max_ev_support = 1 # spliced_intron 7702234-7702855 (orient:+) max_ev_support = 3 scaffold_19 + intron 7702234-7702855 asmbl_21488,asmbl_21489,asmbl_21492 scaffold_19 + retained_intron 7702234-7702855 asmbl_21491 // Exon Skipping and Retention # skipped_exon 8180860-8182966 (orient:+) max_ev_support = 1 # retained_exon 8182278-8182286 (orient:+) max_ev_support = 1 scaffold_19 + retained_exons 8182278-8182286 asmbl_21498 scaffold_19 + intron_skips_exon 8180860-8182966 asmbl_21497 // Retained and Spliced Intron # retained_intron 8232992-8233161 (orient:+) max_ev_support = 1 # spliced_intron 8232992-8233161 (orient:+) max_ev_support = 3 scaffold_19 + intron 8232992-8233161 asmbl_21502 scaffold_19 + retained_intron 8232992-8233161 asmbl_21504 // Retained and Spliced Intron # retained_intron 8258058-8258133 (orient:+) max_ev_support = 1 # spliced_intron 8258058-8258133 (orient:+) max_ev_support = 2 scaffold_19 + intron 8258058-8258133 asmbl_21506 scaffold_19 + retained_intron 8258058-8258133 asmbl_21507 // Retained and Spliced Intron # retained_intron 8263705-8263839 (orient:+) max_ev_support = 2 # spliced_intron 8263705-8263839 (orient:+) max_ev_support = 1 scaffold_19 + intron 8263705-8263839 asmbl_21509 scaffold_19 + retained_intron 8263705-8263839 asmbl_21508 // Retained and Spliced Intron # retained_intron 8753361-8753725 (orient:+) max_ev_support = 1 # spliced_intron 8753361-8753725 (orient:+) max_ev_support = 1 scaffold_19 + intron 8753361-8753725 asmbl_21548 scaffold_19 + retained_intron 8753361-8753725 asmbl_21549 // Retained and Spliced Intron # retained_intron 8753361-8753752 (orient:+) max_ev_support = 1 # spliced_intron 8753361-8753752 (orient:+) max_ev_support = 2 scaffold_19 + intron 8753361-8753752 asmbl_21547 scaffold_19 + retained_intron 8753361-8753752 asmbl_21549 // Retained and Spliced Intron # retained_intron 8753871-8754300 (orient:+) max_ev_support = 1 # spliced_intron 8753871-8754300 (orient:+) max_ev_support = 2 scaffold_19 + intron 8753871-8754300 asmbl_21547,asmbl_21548 scaffold_19 + retained_intron 8753871-8754300 asmbl_21549 // Retained and Spliced Intron # retained_intron 8755862-8756122 (orient:+) max_ev_support = 1 # spliced_intron 8755862-8756122 (orient:+) max_ev_support = 2 scaffold_19 + intron 8755862-8756122 asmbl_21547 scaffold_19 + retained_intron 8755862-8756122 asmbl_21550,asmbl_21551 // Retained and Spliced Intron # retained_intron 8755628-8755743 (orient:+) max_ev_support = 1 # spliced_intron 8755628-8755743 (orient:+) max_ev_support = 2 scaffold_19 + intron 8755628-8755743 asmbl_21547,asmbl_21550 scaffold_19 + retained_intron 8755628-8755743 asmbl_21551 // Retained and Spliced Intron # retained_intron 8805742-8805817 (orient:+) max_ev_support = 1 # spliced_intron 8805742-8805817 (orient:+) max_ev_support = 1 scaffold_19 + intron 8805742-8805817 asmbl_21556 scaffold_19 + retained_intron 8805742-8805817 asmbl_21558 // Retained and Spliced Intron # retained_intron 8805742-8805841 (orient:+) max_ev_support = 1 # spliced_intron 8805742-8805841 (orient:+) max_ev_support = 2 scaffold_19 + intron 8805742-8805841 asmbl_21555 scaffold_19 + retained_intron 8805742-8805841 asmbl_21558 // Retained and Spliced Intron # retained_intron 8805742-8805900 (orient:+) max_ev_support = 1 # spliced_intron 8805742-8805900 (orient:+) max_ev_support = 1 scaffold_19 + intron 8805742-8805900 asmbl_21557 scaffold_19 + retained_intron 8805742-8805900 asmbl_21558 // Exon Skipping and Retention # skipped_exon 9096219-9098178 (orient:+) max_ev_support = 2 # retained_exon 9097972-9098075 (orient:+) max_ev_support = 1 scaffold_19 + retained_exons 9097972-9098075 asmbl_21571 scaffold_19 + intron_skips_exon 9096219-9098178 asmbl_21570 // Retained and Spliced Intron # retained_intron 9456754-9457176 (orient:+) max_ev_support = 3 # spliced_intron 9456754-9457176 (orient:+) max_ev_support = 2 scaffold_19 + intron 9456754-9457176 asmbl_21593 scaffold_19 + retained_intron 9456754-9457176 asmbl_21592 // Exon Skipping and Retention # skipped_exon 9453805-9454559 (orient:+) max_ev_support = 2 # retained_exon 9454023-9454055 (orient:+) max_ev_support = 2 scaffold_19 + retained_exons 9454023-9454055 asmbl_21594 scaffold_19 + intron_skips_exon 9453805-9454559 asmbl_21597 // Retained and Spliced Intron # retained_intron 9521510-9521794 (orient:+) max_ev_support = 2 # spliced_intron 9521510-9521794 (orient:+) max_ev_support = 1 scaffold_19 + intron 9521510-9521794 asmbl_21606 scaffold_19 + retained_intron 9521510-9521794 asmbl_21605 // Retained and Spliced Intron # retained_intron 9534078-9534340 (orient:+) max_ev_support = 2 # spliced_intron 9534078-9534340 (orient:+) max_ev_support = 2 scaffold_19 + intron 9534078-9534340 asmbl_21609 scaffold_19 + retained_intron 9534078-9534340 asmbl_21608 // Retained and Spliced Intron # retained_intron 10121648-10121867 (orient:+) max_ev_support = 2 # spliced_intron 10121648-10121867 (orient:+) max_ev_support = 2 scaffold_19 + intron 10121648-10121867 asmbl_21618 scaffold_19 + retained_intron 10121648-10121867 asmbl_21620 // Exon Skipping and Retention # skipped_exon 10204950-10206951 (orient:+) max_ev_support = 2 # retained_exon 10205501-10205553 (orient:+) max_ev_support = 2 scaffold_19 + retained_exons 10205501-10205553 asmbl_21624 scaffold_19 + intron_skips_exon 10204950-10206951 asmbl_21625 // Exon Skipping and Retention # skipped_exon 10221442-10223579 (orient:+) max_ev_support = 2 # retained_exon 10222384-10222450 (orient:+) max_ev_support = 2 scaffold_19 + retained_exons 10222384-10222450 asmbl_21628 scaffold_19 + intron_skips_exon 10221442-10223579 asmbl_21627 // Retained and Spliced Intron # retained_intron 10302844-10303671 (orient:+) max_ev_support = 1 # spliced_intron 10302844-10303671 (orient:+) max_ev_support = 3 scaffold_19 + intron 10302844-10303671 asmbl_21644 scaffold_19 + retained_intron 10302844-10303671 asmbl_21646,asmbl_21647 // Retained and Spliced Intron # retained_intron 10303465-10303671 (orient:+) max_ev_support = 1 # spliced_intron 10303465-10303671 (orient:+) max_ev_support = 2 scaffold_19 + intron 10303465-10303671 asmbl_21645 scaffold_19 + retained_intron 10303465-10303671 asmbl_21646,asmbl_21647 // Retained and Spliced Intron # retained_intron 10791584-10791697 (orient:+) max_ev_support = 3 # spliced_intron 10791584-10791697 (orient:+) max_ev_support = 1 scaffold_19 + intron 10791584-10791697 asmbl_21656 scaffold_19 + retained_intron 10791584-10791697 asmbl_21655 // Retained and Spliced Intron # retained_intron 10820688-10821270 (orient:+) max_ev_support = 2 # spliced_intron 10820688-10821270 (orient:+) max_ev_support = 3 scaffold_19 + intron 10820688-10821270 asmbl_21660 scaffold_19 + retained_intron 10820688-10821270 asmbl_21661,asmbl_21663 // Retained and Spliced Intron # retained_intron 10821455-10821556 (orient:+) max_ev_support = 1 # spliced_intron 10821455-10821556 (orient:+) max_ev_support = 3 scaffold_19 + intron 10821455-10821556 asmbl_21660,asmbl_21661 scaffold_19 + retained_intron 10821455-10821556 asmbl_21663 // Retained and Spliced Intron # retained_intron 11168462-11168662 (orient:+) max_ev_support = 1 # spliced_intron 11168462-11168662 (orient:+) max_ev_support = 2 scaffold_19 + intron 11168462-11168662 asmbl_21670 scaffold_19 + retained_intron 11168462-11168662 asmbl_21671 // Retained and Spliced Intron # retained_intron 11168790-11168935 (orient:+) max_ev_support = 1 # spliced_intron 11168790-11168935 (orient:+) max_ev_support = 2 scaffold_19 + intron 11168790-11168935 asmbl_21670 scaffold_19 + retained_intron 11168790-11168935 asmbl_21671 // Retained and Spliced Intron # retained_intron 11489772-11489947 (orient:+) max_ev_support = 2 # spliced_intron 11489772-11489947 (orient:+) max_ev_support = 3 scaffold_19 + intron 11489772-11489947 asmbl_21698,asmbl_21704 scaffold_19 + retained_intron 11489772-11489947 asmbl_21705 // Exon Skipping and Retention # skipped_exon 11779419-11780572 (orient:+) max_ev_support = 2 # retained_exon 11780130-11780300 (orient:+) max_ev_support = 1 scaffold_19 + retained_exons 11780130-11780300 asmbl_21721 scaffold_19 + intron_skips_exon 11779419-11780572 asmbl_21720 // Retained and Spliced Intron # retained_intron 11832215-11832284 (orient:+) max_ev_support = 3 # spliced_intron 11832215-11832284 (orient:+) max_ev_support = 2 scaffold_19 + intron 11832215-11832284 asmbl_21727 scaffold_19 + retained_intron 11832215-11832284 asmbl_21726 // Retained and Spliced Intron # retained_intron 12105421-12105533 (orient:+) max_ev_support = 1 # spliced_intron 12105421-12105533 (orient:+) max_ev_support = 2 scaffold_19 + intron 12105421-12105533 asmbl_21741 scaffold_19 + retained_intron 12105421-12105533 asmbl_21742 // Retained and Spliced Intron # retained_intron 12207921-12208221 (orient:+) max_ev_support = 5 # spliced_intron 12207921-12208221 (orient:+) max_ev_support = 2 scaffold_19 + intron 12207921-12208221 asmbl_21763,asmbl_21764 scaffold_19 + retained_intron 12207921-12208221 asmbl_21761 // Retained and Spliced Intron # retained_intron 12207952-12208221 (orient:+) max_ev_support = 5 # spliced_intron 12207952-12208221 (orient:+) max_ev_support = 3 scaffold_19 + intron 12207952-12208221 asmbl_21762 scaffold_19 + retained_intron 12207952-12208221 asmbl_21761 // Retained and Spliced Intron # retained_intron 12208560-12208717 (orient:+) max_ev_support = 3 # spliced_intron 12208560-12208717 (orient:+) max_ev_support = 3 scaffold_19 + intron 12208560-12208717 asmbl_21762,asmbl_21764 scaffold_19 + retained_intron 12208560-12208717 asmbl_21761,asmbl_21763 // Exon Skipping and Retention # skipped_exon 12237766-12238160 (orient:+) max_ev_support = 1 # retained_exon 12237937-12237981 (orient:+) max_ev_support = 2 scaffold_19 + retained_exons 12237937-12237981 asmbl_21767 scaffold_19 + intron_skips_exon 12237766-12238160 asmbl_21769 // Retained and Spliced Intron # retained_intron 12242887-12242971 (orient:+) max_ev_support = 2 # spliced_intron 12242887-12242971 (orient:+) max_ev_support = 2 scaffold_19 + intron 12242887-12242971 asmbl_21767,asmbl_21769 scaffold_19 + retained_intron 12242887-12242971 asmbl_21768 // Retained and Spliced Intron # retained_intron 12250408-12251336 (orient:+) max_ev_support = 2 # spliced_intron 12250408-12251336 (orient:+) max_ev_support = 3 scaffold_19 + intron 12250408-12251336 asmbl_21770 scaffold_19 + retained_intron 12250408-12251336 asmbl_21771,asmbl_21772 // Retained and Spliced Intron # retained_intron 12251512-12251604 (orient:+) max_ev_support = 2 # spliced_intron 12251512-12251604 (orient:+) max_ev_support = 3 scaffold_19 + intron 12251512-12251604 asmbl_21770,asmbl_21772 scaffold_19 + retained_intron 12251512-12251604 asmbl_21771 // Exon Skipping and Retention # skipped_exon 12255741-12257781 (orient:+) max_ev_support = 2 # retained_exon 12256728-12256802 (orient:+) max_ev_support = 1 scaffold_19 + retained_exons 12256728-12256802 asmbl_21774 scaffold_19 + intron_skips_exon 12255741-12257781 asmbl_21773 // Exon Skipping and Retention # skipped_exon 12317345-12318253 (orient:+) max_ev_support = 2 # retained_exon 12317592-12317693 (orient:+) max_ev_support = 2 scaffold_19 + retained_exons 12317592-12317693 asmbl_21777 scaffold_19 + intron_skips_exon 12317345-12318253 asmbl_21776 // Exon Skipping and Retention # skipped_exon 12337312-12338070 (orient:+) max_ev_support = 1 # retained_exon 12337504-12337563 (orient:+) max_ev_support = 2 scaffold_19 + retained_exons 12337504-12337563 asmbl_21787,asmbl_21788 scaffold_19 + intron_skips_exon 12337312-12338070 asmbl_21789 // Exon Skipping and Retention # skipped_exon 12337312-12337821 (orient:+) max_ev_support = 1 # retained_exon 12337504-12337563 (orient:+) max_ev_support = 2 scaffold_19 + retained_exons 12337504-12337563 asmbl_21787,asmbl_21788 scaffold_19 + intron_skips_exon 12337312-12337821 asmbl_21790 // Exon Skipping and Retention # skipped_exon 12337564-12338070 (orient:+) max_ev_support = 2 # retained_exon 12337822-12337857 (orient:+) max_ev_support = 2 scaffold_19 + retained_exons 12337822-12337857 asmbl_21788,asmbl_21790 scaffold_19 + intron_skips_exon 12337564-12338070 asmbl_21787 // Retained and Spliced Intron # retained_intron 12423727-12423837 (orient:+) max_ev_support = 2 # spliced_intron 12423727-12423837 (orient:+) max_ev_support = 2 scaffold_19 + intron 12423727-12423837 asmbl_21797 scaffold_19 + retained_intron 12423727-12423837 asmbl_21798 // Retained and Spliced Intron # retained_intron 12432771-12432955 (orient:+) max_ev_support = 1 # spliced_intron 12432771-12432955 (orient:+) max_ev_support = 2 scaffold_19 + intron 12432771-12432955 asmbl_21799,asmbl_21802 scaffold_19 + retained_intron 12432771-12432955 asmbl_21801,asmbl_21803 // Retained and Spliced Intron # retained_intron 12437236-12437460 (orient:+) max_ev_support = 1 # spliced_intron 12437236-12437460 (orient:+) max_ev_support = 2 scaffold_19 + intron 12437236-12437460 asmbl_21799,asmbl_21803 scaffold_19 + retained_intron 12437236-12437460 asmbl_21801,asmbl_21802 // Retained and Spliced Intron # retained_intron 12436516-12436685 (orient:+) max_ev_support = 1 # spliced_intron 12436516-12436685 (orient:+) max_ev_support = 2 scaffold_19 + intron 12436516-12436685 asmbl_21799,asmbl_21801,asmbl_21802,asmbl_21803 scaffold_19 + retained_intron 12436516-12436685 asmbl_21804 // Retained and Spliced Intron # retained_intron 12492922-12493022 (orient:+) max_ev_support = 3 # spliced_intron 12492922-12493022 (orient:+) max_ev_support = 1 scaffold_19 + intron 12492922-12493022 asmbl_21811,asmbl_21812,asmbl_21813,asmbl_21814,asmbl_21815 scaffold_19 + retained_intron 12492922-12493022 asmbl_21808,asmbl_21809,asmbl_21810 // Retained and Spliced Intron # retained_intron 12491982-12492152 (orient:+) max_ev_support = 1 # spliced_intron 12491982-12492152 (orient:+) max_ev_support = 1 scaffold_19 + intron 12491982-12492152 asmbl_21813 scaffold_19 + retained_intron 12491982-12492152 asmbl_21810,asmbl_21814,asmbl_21815 // Retained and Spliced Intron # retained_intron 12491455-12492121 (orient:+) max_ev_support = 1 # spliced_intron 12491455-12492121 (orient:+) max_ev_support = 2 scaffold_19 + intron 12491455-12492121 asmbl_21812 scaffold_19 + retained_intron 12491455-12492121 asmbl_21814 // Retained and Spliced Intron # retained_intron 12491455-12492152 (orient:+) max_ev_support = 1 # spliced_intron 12491455-12492152 (orient:+) max_ev_support = 2 scaffold_19 + intron 12491455-12492152 asmbl_21808 scaffold_19 + retained_intron 12491455-12492152 asmbl_21814 // Retained and Spliced Intron # retained_intron 12491455-12492160 (orient:+) max_ev_support = 1 # spliced_intron 12491455-12492160 (orient:+) max_ev_support = 2 scaffold_19 + intron 12491455-12492160 asmbl_21809,asmbl_21811 scaffold_19 + retained_intron 12491455-12492160 asmbl_21814 // Retained and Spliced Intron # retained_intron 12492311-12492484 (orient:+) max_ev_support = 1 # spliced_intron 12492311-12492484 (orient:+) max_ev_support = 2 scaffold_19 + intron 12492311-12492484 asmbl_21808,asmbl_21809,asmbl_21810,asmbl_21811,asmbl_21812,asmbl_21813,asmbl_21814 scaffold_19 + retained_intron 12492311-12492484 asmbl_21815 // Retained and Spliced Intron # retained_intron 13001384-13001875 (orient:+) max_ev_support = 2 # spliced_intron 13001384-13001875 (orient:+) max_ev_support = 2 scaffold_19 + intron 13001384-13001875 asmbl_21833 scaffold_19 + retained_intron 13001384-13001875 asmbl_21834 // Retained and Spliced Intron # retained_intron 13003307-13003408 (orient:+) max_ev_support = 2 # spliced_intron 13003307-13003408 (orient:+) max_ev_support = 3 scaffold_19 + intron 13003307-13003408 asmbl_21835,asmbl_21836,asmbl_21844 scaffold_19 + retained_intron 13003307-13003408 asmbl_21837 // Retained and Spliced Intron # retained_intron 13007510-13007842 (orient:+) max_ev_support = 2 # spliced_intron 13007510-13007842 (orient:+) max_ev_support = 3 scaffold_19 + intron 13007510-13007842 asmbl_21835,asmbl_21838,asmbl_21840,asmbl_21843 scaffold_19 + retained_intron 13007510-13007842 asmbl_21839 // Retained and Spliced Intron # retained_intron 13007510-13007898 (orient:+) max_ev_support = 2 # spliced_intron 13007510-13007898 (orient:+) max_ev_support = 3 scaffold_19 + intron 13007510-13007898 asmbl_21836,asmbl_21837,asmbl_21841 scaffold_19 + retained_intron 13007510-13007898 asmbl_21839 // Retained and Spliced Intron # retained_intron 13140882-13141025 (orient:+) max_ev_support = 2 # spliced_intron 13140882-13141025 (orient:+) max_ev_support = 1 scaffold_19 + intron 13140882-13141025 asmbl_21854 scaffold_19 + retained_intron 13140882-13141025 asmbl_21852 // Exon Skipping and Retention # skipped_exon 13157579-13158046 (orient:+) max_ev_support = 1 # retained_exon 13157726-13157873 (orient:+) max_ev_support = 3 scaffold_19 + retained_exons 13157726-13157873 asmbl_21858 scaffold_19 + intron_skips_exon 13157579-13158046 asmbl_21859 // Retained and Spliced Intron # retained_intron 13161925-13162003 (orient:+) max_ev_support = 1 # spliced_intron 13161925-13162003 (orient:+) max_ev_support = 1 scaffold_19 + intron 13161925-13162003 asmbl_21858,asmbl_21859,asmbl_21861 scaffold_19 + retained_intron 13161925-13162003 asmbl_21860 // Exon Skipping and Retention # skipped_exon 13173372-13173750 (orient:+) max_ev_support = 2 # retained_exon 13173553-13173662 (orient:+) max_ev_support = 2 scaffold_19 + retained_exons 13173553-13173662 asmbl_21865,asmbl_21868 scaffold_19 + intron_skips_exon 13173372-13173750 asmbl_21866 // Retained and Spliced Intron # retained_intron 13173213-13173287 (orient:+) max_ev_support = 1 # spliced_intron 13173213-13173287 (orient:+) max_ev_support = 2 scaffold_19 + intron 13173213-13173287 asmbl_21865 scaffold_19 + retained_intron 13173213-13173287 asmbl_21867,asmbl_21868 // Exon Skipping and Retention # skipped_exon 13748885-13749296 (orient:+) max_ev_support = 1 # retained_exon 13748995-13749215 (orient:+) max_ev_support = 2 scaffold_19 + retained_exons 13748995-13749034,13749125-13749215 asmbl_21885,asmbl_21887 scaffold_19 + intron_skips_exon 13748885-13749296 asmbl_21886 // Exon Skipping and Retention # skipped_exon 13749402-13752259 (orient:+) max_ev_support = 2 # retained_exon 13749588-13749644 (orient:+) max_ev_support = 1 scaffold_19 + retained_exons 13749588-13749644 asmbl_21886,asmbl_21887 scaffold_19 + intron_skips_exon 13749402-13752259 asmbl_21885 // Retained and Spliced Intron # retained_intron 96182-96339 (orient:-) max_ev_support = 2 # spliced_intron 96182-96339 (orient:-) max_ev_support = 3 scaffold_19 - intron 96182-96339 asmbl_21980 scaffold_19 - retained_intron 96182-96339 asmbl_21982 // Retained and Spliced Intron # retained_intron 96182-96601 (orient:-) max_ev_support = 2 # spliced_intron 96182-96601 (orient:-) max_ev_support = 3 scaffold_19 - intron 96182-96601 asmbl_21981 scaffold_19 - retained_intron 96182-96601 asmbl_21982 // Retained and Spliced Intron # retained_intron 628249-628359 (orient:-) max_ev_support = 3 # spliced_intron 628249-628359 (orient:-) max_ev_support = 2 scaffold_19 - intron 628249-628359 asmbl_21990 scaffold_19 - retained_intron 628249-628359 asmbl_21987,asmbl_21988,asmbl_21989 // Retained and Spliced Intron # retained_intron 1039595-1040154 (orient:-) max_ev_support = 1 # spliced_intron 1039595-1040154 (orient:-) max_ev_support = 1 scaffold_19 - intron 1039595-1040154 asmbl_22014 scaffold_19 - retained_intron 1039595-1040154 asmbl_22013 // Retained and Spliced Intron # retained_intron 1106060-1106189 (orient:-) max_ev_support = 2 # spliced_intron 1106060-1106189 (orient:-) max_ev_support = 3 scaffold_19 - intron 1106060-1106189 asmbl_22024,asmbl_22026,asmbl_22027 scaffold_19 - retained_intron 1106060-1106189 asmbl_22028,asmbl_22032 // Exon Skipping and Retention # skipped_exon 1667685-1668166 (orient:-) max_ev_support = 2 # retained_exon 1667862-1667885 (orient:-) max_ev_support = 1 scaffold_19 - retained_exons 1667862-1667885 asmbl_22040 scaffold_19 - intron_skips_exon 1667685-1668166 asmbl_22038,asmbl_22041 // Retained and Spliced Intron # retained_intron 2785763-2785796 (orient:-) max_ev_support = 2 # spliced_intron 2785763-2785796 (orient:-) max_ev_support = 1 scaffold_19 - intron 2785763-2785796 asmbl_22067 scaffold_19 - retained_intron 2785763-2785796 asmbl_22066 // Retained and Spliced Intron # retained_intron 3309537-3309592 (orient:-) max_ev_support = 3 # spliced_intron 3309537-3309592 (orient:-) max_ev_support = 1 scaffold_19 - intron 3309537-3309592 asmbl_22100 scaffold_19 - retained_intron 3309537-3309592 asmbl_22099 // Exon Skipping and Retention # skipped_exon 3547741-3548310 (orient:-) max_ev_support = 1 # retained_exon 3548064-3548176 (orient:-) max_ev_support = 2 scaffold_19 - retained_exons 3548064-3548176 asmbl_22113 scaffold_19 - intron_skips_exon 3547741-3548310 asmbl_22114 // Exon Skipping and Retention # skipped_exon 3669778-3671440 (orient:-) max_ev_support = 3 # retained_exon 3670631-3671048 (orient:-) max_ev_support = 2 scaffold_19 - retained_exons 3670631-3671048 asmbl_22118 scaffold_19 - intron_skips_exon 3669778-3671440 asmbl_22116,asmbl_22122 // Retained and Spliced Intron # retained_intron 3669778-3669984 (orient:-) max_ev_support = 2 # spliced_intron 3669778-3669984 (orient:-) max_ev_support = 3 scaffold_19 - intron 3669778-3669984 asmbl_22117 scaffold_19 - retained_intron 3669778-3669984 asmbl_22119 // Retained and Spliced Intron # retained_intron 3668736-3668829 (orient:-) max_ev_support = 2 # spliced_intron 3668736-3668829 (orient:-) max_ev_support = 3 scaffold_19 - intron 3668736-3668829 asmbl_22116,asmbl_22117,asmbl_22118,asmbl_22119 scaffold_19 - retained_intron 3668736-3668829 asmbl_22120,asmbl_22122 // Exon Skipping and Retention # skipped_exon 4792260-4793390 (orient:-) max_ev_support = 2 # retained_exon 4792848-4792986 (orient:-) max_ev_support = 2 scaffold_19 - retained_exons 4792848-4792986 asmbl_22128 scaffold_19 - intron_skips_exon 4792260-4793390 asmbl_22129 // Retained and Spliced Intron # retained_intron 4808048-4808289 (orient:-) max_ev_support = 1 # spliced_intron 4808048-4808289 (orient:-) max_ev_support = 2 scaffold_19 - intron 4808048-4808289 asmbl_22133 scaffold_19 - retained_intron 4808048-4808289 asmbl_22134 // Exon Skipping and Retention # skipped_exon 5643838-5644201 (orient:-) max_ev_support = 1 # retained_exon 5643934-5644042 (orient:-) max_ev_support = 1 scaffold_19 - retained_exons 5643934-5644042 asmbl_22183 scaffold_19 - intron_skips_exon 5643838-5644201 asmbl_22182 // Retained and Spliced Intron # retained_intron 5648006-5648276 (orient:-) max_ev_support = 1 # spliced_intron 5648006-5648276 (orient:-) max_ev_support = 2 scaffold_19 - intron 5648006-5648276 asmbl_22184 scaffold_19 - retained_intron 5648006-5648276 asmbl_22185 // Exon Skipping and Retention # skipped_exon 6407454-6408818 (orient:-) max_ev_support = 1 # retained_exon 6407888-6407947 (orient:-) max_ev_support = 2 scaffold_19 - retained_exons 6407888-6407947 asmbl_22215 scaffold_19 - intron_skips_exon 6407454-6408818 asmbl_22216 // Exon Skipping and Retention # skipped_exon 6407454-6409048 (orient:-) max_ev_support = 2 # retained_exon 6407888-6408830 (orient:-) max_ev_support = 2 scaffold_19 - retained_exons 6407888-6407947,6408819-6408830 asmbl_22215 scaffold_19 - intron_skips_exon 6407454-6409048 asmbl_22213 // Retained and Spliced Intron # retained_intron 7366595-7366687 (orient:-) max_ev_support = 2 # spliced_intron 7366595-7366687 (orient:-) max_ev_support = 2 scaffold_19 - intron 7366595-7366687 asmbl_22241 scaffold_19 - retained_intron 7366595-7366687 asmbl_22240 // Retained and Spliced Intron # retained_intron 7368522-7368604 (orient:-) max_ev_support = 2 # spliced_intron 7368522-7368604 (orient:-) max_ev_support = 2 scaffold_19 - intron 7368522-7368604 asmbl_22241 scaffold_19 - retained_intron 7368522-7368604 asmbl_22242 // Retained and Spliced Intron # retained_intron 7586777-7586903 (orient:-) max_ev_support = 1 # spliced_intron 7586777-7586903 (orient:-) max_ev_support = 1 scaffold_19 - intron 7586777-7586903 asmbl_22247 scaffold_19 - retained_intron 7586777-7586903 asmbl_22245 // Retained and Spliced Intron # retained_intron 7586777-7587075 (orient:-) max_ev_support = 1 # spliced_intron 7586777-7587075 (orient:-) max_ev_support = 1 scaffold_19 - intron 7586777-7587075 asmbl_22246 scaffold_19 - retained_intron 7586777-7587075 asmbl_22245 // Retained and Spliced Intron # retained_intron 7669634-7671322 (orient:-) max_ev_support = 2 # spliced_intron 7669634-7671322 (orient:-) max_ev_support = 1 scaffold_19 - intron 7669634-7671322 asmbl_22251 scaffold_19 - retained_intron 7669634-7671322 asmbl_22250 // Retained and Spliced Intron # retained_intron 8124919-8125012 (orient:-) max_ev_support = 1 # spliced_intron 8124919-8125012 (orient:-) max_ev_support = 2 scaffold_19 - intron 8124919-8125012 asmbl_22276 scaffold_19 - retained_intron 8124919-8125012 asmbl_22277 // Exon Skipping and Retention # skipped_exon 8217962-8218493 (orient:-) max_ev_support = 1 # retained_exon 8218169-8218290 (orient:-) max_ev_support = 2 scaffold_19 - retained_exons 8218169-8218290 asmbl_22283,asmbl_22284,asmbl_22286 scaffold_19 - intron_skips_exon 8217962-8218493 asmbl_22285 // Retained and Spliced Intron # retained_intron 8219321-8219439 (orient:-) max_ev_support = 2 # spliced_intron 8219321-8219439 (orient:-) max_ev_support = 1 scaffold_19 - intron 8219321-8219439 asmbl_22286 scaffold_19 - retained_intron 8219321-8219439 asmbl_22283 // Retained and Spliced Intron # retained_intron 8219321-8219725 (orient:-) max_ev_support = 2 # spliced_intron 8219321-8219725 (orient:-) max_ev_support = 2 scaffold_19 - intron 8219321-8219725 asmbl_22284,asmbl_22285 scaffold_19 - retained_intron 8219321-8219725 asmbl_22283 // Retained and Spliced Intron # retained_intron 8331874-8332032 (orient:-) max_ev_support = 2 # spliced_intron 8331874-8332032 (orient:-) max_ev_support = 1 scaffold_19 - intron 8331874-8332032 asmbl_22295 scaffold_19 - retained_intron 8331874-8332032 asmbl_22294 // Exon Skipping and Retention # skipped_exon 8760674-8762277 (orient:-) max_ev_support = 2 # retained_exon 8761200-8761238 (orient:-) max_ev_support = 2 scaffold_19 - retained_exons 8761200-8761238 asmbl_22310 scaffold_19 - intron_skips_exon 8760674-8762277 asmbl_22311 // Retained and Spliced Intron # retained_intron 8870718-8870824 (orient:-) max_ev_support = 1 # spliced_intron 8870718-8870824 (orient:-) max_ev_support = 2 scaffold_19 - intron 8870718-8870824 asmbl_22315 scaffold_19 - retained_intron 8870718-8870824 asmbl_22316 // Retained and Spliced Intron # retained_intron 8872484-8872914 (orient:-) max_ev_support = 1 # spliced_intron 8872484-8872914 (orient:-) max_ev_support = 2 scaffold_19 - intron 8872484-8872914 asmbl_22315 scaffold_19 - retained_intron 8872484-8872914 asmbl_22317 // Exon Skipping and Retention # skipped_exon 9376163-9378679 (orient:-) max_ev_support = 2 # retained_exon 9376376-9376478 (orient:-) max_ev_support = 1 scaffold_19 - retained_exons 9376376-9376478 asmbl_22330 scaffold_19 - intron_skips_exon 9376163-9378679 asmbl_22329 // Retained and Spliced Intron # retained_intron 9488173-9488268 (orient:-) max_ev_support = 1 # spliced_intron 9488173-9488268 (orient:-) max_ev_support = 2 scaffold_19 - intron 9488173-9488268 asmbl_22332 scaffold_19 - retained_intron 9488173-9488268 asmbl_22335 // Exon Skipping and Retention # skipped_exon 10850753-10852820 (orient:-) max_ev_support = 3 # retained_exon 10851587-10851622 (orient:-) max_ev_support = 1 scaffold_19 - retained_exons 10851587-10851622 asmbl_22364 scaffold_19 - intron_skips_exon 10850753-10852820 asmbl_22359 // Retained and Spliced Intron # retained_intron 11458491-11458642 (orient:-) max_ev_support = 2 # spliced_intron 11458491-11458642 (orient:-) max_ev_support = 2 scaffold_19 - intron 11458491-11458642 asmbl_22387,asmbl_22388,asmbl_22389,asmbl_22390 scaffold_19 - retained_intron 11458491-11458642 asmbl_22386 // Retained and Spliced Intron # retained_intron 11460464-11460646 (orient:-) max_ev_support = 1 # spliced_intron 11460464-11460646 (orient:-) max_ev_support = 2 scaffold_19 - intron 11460464-11460646 asmbl_22387,asmbl_22389 scaffold_19 - retained_intron 11460464-11460646 asmbl_22388,asmbl_22390 // Retained and Spliced Intron # retained_intron 11457726-11458092 (orient:-) max_ev_support = 1 # spliced_intron 11457726-11458092 (orient:-) max_ev_support = 2 scaffold_19 - intron 11457726-11458092 asmbl_22386,asmbl_22387,asmbl_22388,asmbl_22390 scaffold_19 - retained_intron 11457726-11458092 asmbl_22389 // Retained and Spliced Intron # retained_intron 11468745-11468906 (orient:-) max_ev_support = 1 # spliced_intron 11468745-11468906 (orient:-) max_ev_support = 2 scaffold_19 - intron 11468745-11468906 asmbl_22393 scaffold_19 - retained_intron 11468745-11468906 asmbl_22394 // Retained and Spliced Intron # retained_intron 11470827-11471462 (orient:-) max_ev_support = 2 # spliced_intron 11470827-11471462 (orient:-) max_ev_support = 2 scaffold_19 - intron 11470827-11471462 asmbl_22395 scaffold_19 - retained_intron 11470827-11471462 asmbl_22396,asmbl_22397 // Retained and Spliced Intron # retained_intron 11475869-11475988 (orient:-) max_ev_support = 1 # spliced_intron 11475869-11475988 (orient:-) max_ev_support = 1 scaffold_19 - intron 11475869-11475988 asmbl_22399 scaffold_19 - retained_intron 11475869-11475988 asmbl_22398,asmbl_22400 // Retained and Spliced Intron # retained_intron 11483212-11483436 (orient:-) max_ev_support = 2 # spliced_intron 11483212-11483436 (orient:-) max_ev_support = 2 scaffold_19 - intron 11483212-11483436 asmbl_22409 scaffold_19 - retained_intron 11483212-11483436 asmbl_22404,asmbl_22406,asmbl_22410 // Retained and Spliced Intron # retained_intron 11483212-11483614 (orient:-) max_ev_support = 2 # spliced_intron 11483212-11483614 (orient:-) max_ev_support = 1 scaffold_19 - intron 11483212-11483614 asmbl_22414 scaffold_19 - retained_intron 11483212-11483614 asmbl_22404 // Retained and Spliced Intron # retained_intron 11483479-11483614 (orient:-) max_ev_support = 2 # spliced_intron 11483479-11483614 (orient:-) max_ev_support = 2 scaffold_19 - intron 11483479-11483614 asmbl_22409 scaffold_19 - retained_intron 11483479-11483614 asmbl_22404 // Retained and Spliced Intron # retained_intron 11481673-11481887 (orient:-) max_ev_support = 2 # spliced_intron 11481673-11481887 (orient:-) max_ev_support = 2 scaffold_19 - intron 11481673-11481887 asmbl_22403,asmbl_22404,asmbl_22409,asmbl_22414 scaffold_19 - retained_intron 11481673-11481887 asmbl_22405 // Retained and Spliced Intron # retained_intron 11481997-11482175 (orient:-) max_ev_support = 2 # spliced_intron 11481997-11482175 (orient:-) max_ev_support = 2 scaffold_19 - intron 11481997-11482175 asmbl_22403,asmbl_22404,asmbl_22409,asmbl_22414 scaffold_19 - retained_intron 11481997-11482175 asmbl_22405 // Retained and Spliced Intron # retained_intron 11482922-11483072 (orient:-) max_ev_support = 2 # spliced_intron 11482922-11483072 (orient:-) max_ev_support = 2 scaffold_19 - intron 11482922-11483072 asmbl_22404,asmbl_22409,asmbl_22410,asmbl_22414 scaffold_19 - retained_intron 11482922-11483072 asmbl_22406 // Retained and Spliced Intron # retained_intron 11484684-11484870 (orient:-) max_ev_support = 2 # spliced_intron 11484684-11484870 (orient:-) max_ev_support = 2 scaffold_19 - intron 11484684-11484870 asmbl_22404,asmbl_22408,asmbl_22409,asmbl_22412,asmbl_22414 scaffold_19 - retained_intron 11484684-11484870 asmbl_22407,asmbl_22413 // Exon Skipping and Retention # skipped_exon 11483212-11483614 (orient:-) max_ev_support = 1 # retained_exon 11483437-11483478 (orient:-) max_ev_support = 2 scaffold_19 - retained_exons 11483437-11483478 asmbl_22409 scaffold_19 - intron_skips_exon 11483212-11483614 asmbl_22414 // Retained and Spliced Intron # retained_intron 11485415-11485915 (orient:-) max_ev_support = 1 # spliced_intron 11485415-11485915 (orient:-) max_ev_support = 2 scaffold_19 - intron 11485415-11485915 asmbl_22404,asmbl_22409,asmbl_22412,asmbl_22413,asmbl_22414 scaffold_19 - retained_intron 11485415-11485915 asmbl_22411 // Retained and Spliced Intron # retained_intron 11483966-11484174 (orient:-) max_ev_support = 1 # spliced_intron 11483966-11484174 (orient:-) max_ev_support = 2 scaffold_19 - intron 11483966-11484174 asmbl_22404,asmbl_22407,asmbl_22408,asmbl_22409,asmbl_22413,asmbl_22414 scaffold_19 - retained_intron 11483966-11484174 asmbl_22412 // Retained and Spliced Intron # retained_intron 11578071-11578294 (orient:-) max_ev_support = 2 # spliced_intron 11578071-11578294 (orient:-) max_ev_support = 1 scaffold_19 - intron 11578071-11578294 asmbl_22428 scaffold_19 - retained_intron 11578071-11578294 asmbl_22427 // Exon Skipping and Retention # skipped_exon 12079113-12079560 (orient:-) max_ev_support = 1 # retained_exon 12079283-12079387 (orient:-) max_ev_support = 3 scaffold_19 - retained_exons 12079283-12079387 asmbl_22447 scaffold_19 - intron_skips_exon 12079113-12079560 asmbl_22448 // Retained and Spliced Intron # retained_intron 12102324-12102615 (orient:-) max_ev_support = 2 # spliced_intron 12102324-12102615 (orient:-) max_ev_support = 2 scaffold_19 - intron 12102324-12102615 asmbl_22452 scaffold_19 - retained_intron 12102324-12102615 asmbl_22453 // Retained and Spliced Intron # retained_intron 12107338-12107555 (orient:-) max_ev_support = 2 # spliced_intron 12107338-12107555 (orient:-) max_ev_support = 2 scaffold_19 - intron 12107338-12107555 asmbl_22457 scaffold_19 - retained_intron 12107338-12107555 asmbl_22455,asmbl_22458 // Exon Skipping and Retention # skipped_exon 12107159-12107555 (orient:-) max_ev_support = 1 # retained_exon 12107239-12107337 (orient:-) max_ev_support = 2 scaffold_19 - retained_exons 12107239-12107337 asmbl_22456,asmbl_22457 scaffold_19 - intron_skips_exon 12107159-12107555 asmbl_22461 // Exon Skipping and Retention # skipped_exon 12107338-12107894 (orient:-) max_ev_support = 2 # retained_exon 12107556-12107576 (orient:-) max_ev_support = 2 scaffold_19 - retained_exons 12107556-12107576 asmbl_22457,asmbl_22461 scaffold_19 - intron_skips_exon 12107338-12107894 asmbl_22456 // Retained and Spliced Intron # retained_intron 12107159-12107238 (orient:-) max_ev_support = 2 # spliced_intron 12107159-12107238 (orient:-) max_ev_support = 2 scaffold_19 - intron 12107159-12107238 asmbl_22455,asmbl_22456,asmbl_22457 scaffold_19 - retained_intron 12107159-12107238 asmbl_22458 // Retained and Spliced Intron # retained_intron 12107159-12107555 (orient:-) max_ev_support = 2 # spliced_intron 12107159-12107555 (orient:-) max_ev_support = 1 scaffold_19 - intron 12107159-12107555 asmbl_22461 scaffold_19 - retained_intron 12107159-12107555 asmbl_22458 // Retained and Spliced Intron # retained_intron 12246328-12246698 (orient:-) max_ev_support = 2 # spliced_intron 12246328-12246698 (orient:-) max_ev_support = 2 scaffold_19 - intron 12246328-12246698 asmbl_22468,asmbl_22470 scaffold_19 - retained_intron 12246328-12246698 asmbl_22469,asmbl_22471,asmbl_22473 // Retained and Spliced Intron # retained_intron 12246351-12246698 (orient:-) max_ev_support = 2 # spliced_intron 12246351-12246698 (orient:-) max_ev_support = 1 scaffold_19 - intron 12246351-12246698 asmbl_22472 scaffold_19 - retained_intron 12246351-12246698 asmbl_22469,asmbl_22471,asmbl_22473 // Retained and Spliced Intron # retained_intron 12247353-12247482 (orient:-) max_ev_support = 1 # spliced_intron 12247353-12247482 (orient:-) max_ev_support = 2 scaffold_19 - intron 12247353-12247482 asmbl_22468,asmbl_22469,asmbl_22470,asmbl_22473 scaffold_19 - retained_intron 12247353-12247482 asmbl_22471,asmbl_22474 // Retained and Spliced Intron # retained_intron 12247166-12247258 (orient:-) max_ev_support = 1 # spliced_intron 12247166-12247258 (orient:-) max_ev_support = 2 scaffold_19 - intron 12247166-12247258 asmbl_22468,asmbl_22469,asmbl_22470,asmbl_22471,asmbl_22473 scaffold_19 - retained_intron 12247166-12247258 asmbl_22474 // Exon Skipping and Retention # skipped_exon 12392010-12393051 (orient:-) max_ev_support = 2 # retained_exon 12392290-12392819 (orient:-) max_ev_support = 2 scaffold_19 - retained_exons 12392290-12392325,12392452-12392550,12392644-12392670,12392754-12392819 asmbl_22478,asmbl_22479,asmbl_22481,asmbl_22482 scaffold_19 - intron_skips_exon 12392010-12393051 asmbl_22480 // Exon Skipping and Retention # skipped_exon 12393089-12394928 (orient:-) max_ev_support = 1 # retained_exon 12394175-12394258 (orient:-) max_ev_support = 2 scaffold_19 - retained_exons 12394175-12394258 asmbl_22478,asmbl_22479,asmbl_22480 scaffold_19 - intron_skips_exon 12393089-12394928 asmbl_22481,asmbl_22482 // Exon Skipping and Retention # skipped_exon 12451053-12451773 (orient:-) max_ev_support = 1 # retained_exon 12451454-12451603 (orient:-) max_ev_support = 1 scaffold_19 - retained_exons 12451454-12451603 asmbl_22487 scaffold_19 - intron_skips_exon 12451053-12451773 asmbl_22488 // Retained and Spliced Intron # retained_intron 12482434-12483861 (orient:-) max_ev_support = 4 # spliced_intron 12482434-12483861 (orient:-) max_ev_support = 2 scaffold_19 - intron 12482434-12483861 asmbl_22500 scaffold_19 - retained_intron 12482434-12483861 asmbl_22499 // Retained and Spliced Intron # retained_intron 12487325-12488732 (orient:-) max_ev_support = 4 # spliced_intron 12487325-12488732 (orient:-) max_ev_support = 3 scaffold_19 - intron 12487325-12488732 asmbl_22502 scaffold_19 - retained_intron 12487325-12488732 asmbl_22501 // Retained and Spliced Intron # retained_intron 12574951-12575303 (orient:-) max_ev_support = 1 # spliced_intron 12574951-12575303 (orient:-) max_ev_support = 1 scaffold_19 - intron 12574951-12575303 asmbl_22521 scaffold_19 - retained_intron 12574951-12575303 asmbl_22519 // Retained and Spliced Intron # retained_intron 12574951-12575421 (orient:-) max_ev_support = 1 # spliced_intron 12574951-12575421 (orient:-) max_ev_support = 2 scaffold_19 - intron 12574951-12575421 asmbl_22518,asmbl_22520 scaffold_19 - retained_intron 12574951-12575421 asmbl_22519 // Retained and Spliced Intron # retained_intron 12686175-12686347 (orient:-) max_ev_support = 1 # spliced_intron 12686175-12686347 (orient:-) max_ev_support = 2 scaffold_19 - intron 12686175-12686347 asmbl_22527,asmbl_22528,asmbl_22530 scaffold_19 - retained_intron 12686175-12686347 asmbl_22529 // Retained and Spliced Intron # retained_intron 12700478-12700502 (orient:-) max_ev_support = 2 # spliced_intron 12700478-12700502 (orient:-) max_ev_support = 1 scaffold_19 - intron 12700478-12700502 asmbl_22532 scaffold_19 - retained_intron 12700478-12700502 asmbl_22531 // Retained and Spliced Intron # retained_intron 12819130-12819507 (orient:-) max_ev_support = 4 # spliced_intron 12819130-12819507 (orient:-) max_ev_support = 2 scaffold_19 - intron 12819130-12819507 asmbl_22548,asmbl_22549,asmbl_22553,asmbl_22554 scaffold_19 - retained_intron 12819130-12819507 asmbl_22545,asmbl_22546,asmbl_22547 // Retained and Spliced Intron # retained_intron 12821262-12821857 (orient:-) max_ev_support = 1 # spliced_intron 12821262-12821857 (orient:-) max_ev_support = 3 scaffold_19 - intron 12821262-12821857 asmbl_22545,asmbl_22548,asmbl_22549 scaffold_19 - retained_intron 12821262-12821857 asmbl_22546,asmbl_22547,asmbl_22553,asmbl_22554 // Retained and Spliced Intron # retained_intron 12822074-12822167 (orient:-) max_ev_support = 1 # spliced_intron 12822074-12822167 (orient:-) max_ev_support = 3 scaffold_19 - intron 12822074-12822167 asmbl_22545,asmbl_22546,asmbl_22547,asmbl_22549,asmbl_22553,asmbl_22554 scaffold_19 - retained_intron 12822074-12822167 asmbl_22548 // Retained and Spliced Intron # retained_intron 12822372-12822631 (orient:-) max_ev_support = 1 # spliced_intron 12822372-12822631 (orient:-) max_ev_support = 1 scaffold_19 - intron 12822372-12822631 asmbl_22547 scaffold_19 - retained_intron 12822372-12822631 asmbl_22553 // Retained and Spliced Intron # retained_intron 12822377-12822631 (orient:-) max_ev_support = 1 # spliced_intron 12822377-12822631 (orient:-) max_ev_support = 3 scaffold_19 - intron 12822377-12822631 asmbl_22545,asmbl_22546,asmbl_22548,asmbl_22549,asmbl_22554 scaffold_19 - retained_intron 12822377-12822631 asmbl_22553 // Exon Skipping and Retention # skipped_exon 12956159-12956739 (orient:-) max_ev_support = 2 # retained_exon 12956212-12956267 (orient:-) max_ev_support = 2 scaffold_19 - retained_exons 12956212-12956267 asmbl_22564,asmbl_22565,asmbl_22566,asmbl_22568 scaffold_19 - intron_skips_exon 12956159-12956739 asmbl_22567 // Retained and Spliced Intron # retained_intron 12958865-12958948 (orient:-) max_ev_support = 2 # spliced_intron 12958865-12958948 (orient:-) max_ev_support = 2 scaffold_19 - intron 12958865-12958948 asmbl_22564,asmbl_22568 scaffold_19 - retained_intron 12958865-12958948 asmbl_22566 // Exon Skipping and Retention # skipped_exon 12957723-12958376 (orient:-) max_ev_support = 2 # retained_exon 12958036-12958121 (orient:-) max_ev_support = 1 scaffold_19 - retained_exons 12958036-12958121 asmbl_22568 scaffold_19 - intron_skips_exon 12957723-12958376 asmbl_22564,asmbl_22566 // Retained and Spliced Intron # retained_intron 12971908-12971989 (orient:-) max_ev_support = 3 # spliced_intron 12971908-12971989 (orient:-) max_ev_support = 2 scaffold_19 - intron 12971908-12971989 asmbl_22576 scaffold_19 - retained_intron 12971908-12971989 asmbl_22573,asmbl_22574,asmbl_22575,asmbl_22578 // Exon Skipping and Retention # skipped_exon 12972587-12973050 (orient:-) max_ev_support = 2 # retained_exon 12972818-12972868 (orient:-) max_ev_support = 3 scaffold_19 - retained_exons 12972818-12972868 asmbl_22573,asmbl_22576 scaffold_19 - intron_skips_exon 12972587-12973050 asmbl_22575,asmbl_22578 // Retained and Spliced Intron # retained_intron 12972587-12972817 (orient:-) max_ev_support = 3 # spliced_intron 12972587-12972817 (orient:-) max_ev_support = 3 scaffold_19 - intron 12972587-12972817 asmbl_22573,asmbl_22576 scaffold_19 - retained_intron 12972587-12972817 asmbl_22574 // Retained and Spliced Intron # retained_intron 12972587-12973050 (orient:-) max_ev_support = 3 # spliced_intron 12972587-12973050 (orient:-) max_ev_support = 2 scaffold_19 - intron 12972587-12973050 asmbl_22575,asmbl_22578 scaffold_19 - retained_intron 12972587-12973050 asmbl_22574 // Retained and Spliced Intron # retained_intron 12972869-12973050 (orient:-) max_ev_support = 1 # spliced_intron 12972869-12973050 (orient:-) max_ev_support = 3 scaffold_19 - intron 12972869-12973050 asmbl_22573,asmbl_22576,asmbl_22577 scaffold_19 - retained_intron 12972869-12973050 asmbl_22574 // Retained and Spliced Intron # retained_intron 12973202-12973409 (orient:-) max_ev_support = 1 # spliced_intron 12973202-12973409 (orient:-) max_ev_support = 3 scaffold_19 - intron 12973202-12973409 asmbl_22573,asmbl_22576,asmbl_22578 scaffold_19 - retained_intron 12973202-12973409 asmbl_22574 // Retained and Spliced Intron # retained_intron 13010845-13011231 (orient:-) max_ev_support = 2 # spliced_intron 13010845-13011231 (orient:-) max_ev_support = 2 scaffold_19 - intron 13010845-13011231 asmbl_22581,asmbl_22583 scaffold_19 - retained_intron 13010845-13011231 asmbl_22579,asmbl_22580 // Retained and Spliced Intron # retained_intron 13011394-13011749 (orient:-) max_ev_support = 2 # spliced_intron 13011394-13011749 (orient:-) max_ev_support = 2 scaffold_19 - intron 13011394-13011749 asmbl_22581,asmbl_22583 scaffold_19 - retained_intron 13011394-13011749 asmbl_22579 // Retained and Spliced Intron # retained_intron 13010263-13010705 (orient:-) max_ev_support = 2 # spliced_intron 13010263-13010705 (orient:-) max_ev_support = 2 scaffold_19 - intron 13010263-13010705 asmbl_22579,asmbl_22581,asmbl_22583 scaffold_19 - retained_intron 13010263-13010705 asmbl_22580 // Retained and Spliced Intron # retained_intron 13029049-13029345 (orient:-) max_ev_support = 2 # spliced_intron 13029049-13029345 (orient:-) max_ev_support = 3 scaffold_19 - intron 13029049-13029345 asmbl_22585,asmbl_22586 scaffold_19 - retained_intron 13029049-13029345 asmbl_22587 // Retained and Spliced Intron # retained_intron 13102708-13103005 (orient:-) max_ev_support = 2 # spliced_intron 13102708-13103005 (orient:-) max_ev_support = 3 scaffold_19 - intron 13102708-13103005 asmbl_22595 scaffold_19 - retained_intron 13102708-13103005 asmbl_22596 // Retained and Spliced Intron # retained_intron 13155142-13155525 (orient:-) max_ev_support = 2 # spliced_intron 13155142-13155525 (orient:-) max_ev_support = 1 scaffold_19 - intron 13155142-13155525 asmbl_22608 scaffold_19 - retained_intron 13155142-13155525 asmbl_22604,asmbl_22606,asmbl_22607 // Retained and Spliced Intron # retained_intron 13154555-13154625 (orient:-) max_ev_support = 1 # spliced_intron 13154555-13154625 (orient:-) max_ev_support = 2 scaffold_19 - intron 13154555-13154625 asmbl_22604,asmbl_22605,asmbl_22607 scaffold_19 - retained_intron 13154555-13154625 asmbl_22606 // Retained and Spliced Intron # retained_intron 13154957-13155027 (orient:-) max_ev_support = 1 # spliced_intron 13154957-13155027 (orient:-) max_ev_support = 2 scaffold_19 - intron 13154957-13155027 asmbl_22604,asmbl_22606 scaffold_19 - retained_intron 13154957-13155027 asmbl_22607,asmbl_22608 // Retained and Spliced Intron # retained_intron 13155009-13155525 (orient:-) max_ev_support = 1 # spliced_intron 13155009-13155525 (orient:-) max_ev_support = 2 scaffold_19 - intron 13155009-13155525 asmbl_22605 scaffold_19 - retained_intron 13155009-13155525 asmbl_22607 // Retained and Spliced Intron # retained_intron 13215875-13216174 (orient:-) max_ev_support = 3 # spliced_intron 13215875-13216174 (orient:-) max_ev_support = 2 scaffold_19 - intron 13215875-13216174 asmbl_22615 scaffold_19 - retained_intron 13215875-13216174 asmbl_22609 // Exon Skipping and Retention # skipped_exon 13211934-13213021 (orient:-) max_ev_support = 1 # retained_exon 13212154-13212329 (orient:-) max_ev_support = 2 scaffold_19 - retained_exons 13212154-13212329 asmbl_22610,asmbl_22620,asmbl_22621,asmbl_22622,asmbl_22623 scaffold_19 - intron_skips_exon 13211934-13213021 asmbl_22619 // Exon Skipping and Retention # skipped_exon 13233310-13234904 (orient:-) max_ev_support = 2 # retained_exon 13233721-13233855 (orient:-) max_ev_support = 2 scaffold_19 - retained_exons 13233721-13233855 asmbl_22610 scaffold_19 - intron_skips_exon 13233310-13234904 asmbl_22609 // Retained and Spliced Intron # retained_intron 13236971-13237060 (orient:-) max_ev_support = 2 # spliced_intron 13236971-13237060 (orient:-) max_ev_support = 2 scaffold_19 - intron 13236971-13237060 asmbl_22609,asmbl_22610,asmbl_22613 scaffold_19 - retained_intron 13236971-13237060 asmbl_22614 // Exon Skipping and Retention # skipped_exon 13195164-13195671 (orient:-) max_ev_support = 2 # retained_exon 13195378-13195451 (orient:-) max_ev_support = 2 scaffold_19 - retained_exons 13195378-13195451 asmbl_22617 scaffold_19 - intron_skips_exon 13195164-13195671 asmbl_22610,asmbl_22619,asmbl_22620,asmbl_22621,asmbl_22622,asmbl_22623 // Retained and Spliced Intron # retained_intron 13192750-13192828 (orient:-) max_ev_support = 2 # spliced_intron 13192750-13192828 (orient:-) max_ev_support = 1 scaffold_19 - intron 13192750-13192828 asmbl_22622 scaffold_19 - retained_intron 13192750-13192828 asmbl_22618 // Retained and Spliced Intron # retained_intron 13192750-13192898 (orient:-) max_ev_support = 2 # spliced_intron 13192750-13192898 (orient:-) max_ev_support = 2 scaffold_19 - intron 13192750-13192898 asmbl_22610,asmbl_22617,asmbl_22619,asmbl_22620,asmbl_22621,asmbl_22623 scaffold_19 - retained_intron 13192750-13192898 asmbl_22618 // Retained and Spliced Intron # retained_intron 13220754-13221798 (orient:-) max_ev_support = 1 # spliced_intron 13220754-13221798 (orient:-) max_ev_support = 3 scaffold_19 - intron 13220754-13221798 asmbl_22609,asmbl_22610,asmbl_22615,asmbl_22619,asmbl_22621,asmbl_22622 scaffold_19 - retained_intron 13220754-13221798 asmbl_22620,asmbl_22623 // Retained and Spliced Intron # retained_intron 13224244-13224327 (orient:-) max_ev_support = 1 # spliced_intron 13224244-13224327 (orient:-) max_ev_support = 3 scaffold_19 - intron 13224244-13224327 asmbl_22609,asmbl_22610,asmbl_22615,asmbl_22619,asmbl_22620,asmbl_22622 scaffold_19 - retained_intron 13224244-13224327 asmbl_22621,asmbl_22623 // Retained and Spliced Intron # retained_intron 13254452-13254529 (orient:-) max_ev_support = 3 # spliced_intron 13254452-13254529 (orient:-) max_ev_support = 1 scaffold_19 - intron 13254452-13254529 asmbl_22627 scaffold_19 - retained_intron 13254452-13254529 asmbl_22626 // Exon Skipping and Retention # skipped_exon 13262428-13262871 (orient:-) max_ev_support = 1 # retained_exon 13262630-13262802 (orient:-) max_ev_support = 2 scaffold_19 - retained_exons 13262630-13262802 asmbl_22630,asmbl_22631 scaffold_19 - intron_skips_exon 13262428-13262871 asmbl_22633 // Retained and Spliced Intron # retained_intron 13266345-13266432 (orient:-) max_ev_support = 1 # spliced_intron 13266345-13266432 (orient:-) max_ev_support = 2 scaffold_19 - intron 13266345-13266432 asmbl_22634 scaffold_19 - retained_intron 13266345-13266432 asmbl_22635 // Exon Skipping and Retention # skipped_exon 13267387-13268218 (orient:-) max_ev_support = 2 # retained_exon 13268055-13268107 (orient:-) max_ev_support = 2 scaffold_19 - retained_exons 13268055-13268107 asmbl_22636 scaffold_19 - intron_skips_exon 13267387-13268218 asmbl_22637 // Retained and Spliced Intron # retained_intron 13637265-13638466 (orient:-) max_ev_support = 4 # spliced_intron 13637265-13638466 (orient:-) max_ev_support = 1 scaffold_19 - intron 13637265-13638466 asmbl_22667 scaffold_19 - retained_intron 13637265-13638466 asmbl_22666 // Retained and Spliced Intron # retained_intron 44017-44055 (orient:-) max_ev_support = 1 # spliced_intron 44017-44055 (orient:-) max_ev_support = 1 scaffold_2 - intron 44017-44055 asmbl_22785 scaffold_2 - retained_intron 44017-44055 asmbl_22786 // Retained and Spliced Intron # retained_intron 276356-276443 (orient:-) max_ev_support = 2 # spliced_intron 276356-276443 (orient:-) max_ev_support = 1 scaffold_2 - intron 276356-276443 asmbl_22795 scaffold_2 - retained_intron 276356-276443 asmbl_22794 // Exon Skipping and Retention # skipped_exon 481946-483382 (orient:-) max_ev_support = 1 # retained_exon 483027-483134 (orient:-) max_ev_support = 2 scaffold_2 - retained_exons 483027-483134 asmbl_22802,asmbl_22806 scaffold_2 - intron_skips_exon 481946-483382 asmbl_22803 // Exon Skipping and Retention # skipped_exon 486166-488771 (orient:-) max_ev_support = 1 # retained_exon 487354-487525 (orient:-) max_ev_support = 3 scaffold_2 - retained_exons 487354-487525 asmbl_22802,asmbl_22803 scaffold_2 - intron_skips_exon 486166-488771 asmbl_22806 // Retained and Spliced Intron # retained_intron 956724-956897 (orient:-) max_ev_support = 2 # spliced_intron 956724-956897 (orient:-) max_ev_support = 2 scaffold_2 - intron 956724-956897 asmbl_22826 scaffold_2 - retained_intron 956724-956897 asmbl_22825,asmbl_22827 // Retained and Spliced Intron # retained_intron 956971-957115 (orient:-) max_ev_support = 2 # spliced_intron 956971-957115 (orient:-) max_ev_support = 2 scaffold_2 - intron 956971-957115 asmbl_22826,asmbl_22827 scaffold_2 - retained_intron 956971-957115 asmbl_22825 // Exon Skipping and Retention # skipped_exon 1616740-1617196 (orient:-) max_ev_support = 1 # retained_exon 1616827-1616879 (orient:-) max_ev_support = 2 scaffold_2 - retained_exons 1616827-1616879 asmbl_22860 scaffold_2 - intron_skips_exon 1616740-1617196 asmbl_22863 // Exon Skipping and Retention # skipped_exon 2297619-2300475 (orient:-) max_ev_support = 1 # retained_exon 2297728-2297862 (orient:-) max_ev_support = 1 scaffold_2 - retained_exons 2297728-2297862 asmbl_22886 scaffold_2 - intron_skips_exon 2297619-2300475 asmbl_22885 // Retained and Spliced Intron # retained_intron 2324086-2324113 (orient:-) max_ev_support = 1 # spliced_intron 2324086-2324113 (orient:-) max_ev_support = 1 scaffold_2 - intron 2324086-2324113 asmbl_22890 scaffold_2 - retained_intron 2324086-2324113 asmbl_22889 // Exon Skipping and Retention # skipped_exon 2454814-2455483 (orient:-) max_ev_support = 2 # retained_exon 2455317-2455394 (orient:-) max_ev_support = 2 scaffold_2 - retained_exons 2455317-2455394 asmbl_22895 scaffold_2 - intron_skips_exon 2454814-2455483 asmbl_22894 // Retained and Spliced Intron # retained_intron 2542873-2542935 (orient:-) max_ev_support = 2 # spliced_intron 2542873-2542935 (orient:-) max_ev_support = 1 scaffold_2 - intron 2542873-2542935 asmbl_22901,asmbl_22902 scaffold_2 - retained_intron 2542873-2542935 asmbl_22900,asmbl_22903 // Retained and Spliced Intron # retained_intron 2544294-2544550 (orient:-) max_ev_support = 1 # spliced_intron 2544294-2544550 (orient:-) max_ev_support = 2 scaffold_2 - intron 2544294-2544550 asmbl_22900,asmbl_22902,asmbl_22904 scaffold_2 - retained_intron 2544294-2544550 asmbl_22901 // Exon Skipping and Retention # skipped_exon 2878799-2879496 (orient:-) max_ev_support = 1 # retained_exon 2879362-2879391 (orient:-) max_ev_support = 2 scaffold_2 - retained_exons 2879362-2879391 asmbl_22930,asmbl_22938,asmbl_22940,asmbl_22943 scaffold_2 - intron_skips_exon 2878799-2879496 asmbl_22931,asmbl_22933,asmbl_22935,asmbl_22939,asmbl_22941 // Exon Skipping and Retention # skipped_exon 2880763-2882183 (orient:-) max_ev_support = 1 # retained_exon 2881881-2881925 (orient:-) max_ev_support = 2 scaffold_2 - retained_exons 2881881-2881925 asmbl_22930,asmbl_22935,asmbl_22939,asmbl_22943 scaffold_2 - intron_skips_exon 2880763-2882183 asmbl_22931,asmbl_22933,asmbl_22938,asmbl_22940,asmbl_22941 // Retained and Spliced Intron # retained_intron 2872107-2872884 (orient:-) max_ev_support = 3 # spliced_intron 2872107-2872884 (orient:-) max_ev_support = 2 scaffold_2 - intron 2872107-2872884 asmbl_22933,asmbl_22944 scaffold_2 - retained_intron 2872107-2872884 asmbl_22931 // Exon Skipping and Retention # skipped_exon 2882290-2884803 (orient:-) max_ev_support = 2 # retained_exon 2883733-2883825 (orient:-) max_ev_support = 1 scaffold_2 - retained_exons 2883733-2883825 asmbl_22939 scaffold_2 - intron_skips_exon 2882290-2884803 asmbl_22930,asmbl_22931,asmbl_22933,asmbl_22935,asmbl_22936,asmbl_22937,asmbl_22938,asmbl_22940,asmbl_22941,asmbl_22943 // Retained and Spliced Intron # retained_intron 2871451-2871540 (orient:-) max_ev_support = 1 # spliced_intron 2871451-2871540 (orient:-) max_ev_support = 2 scaffold_2 - intron 2871451-2871540 asmbl_22931,asmbl_22933,asmbl_22942 scaffold_2 - retained_intron 2871451-2871540 asmbl_22944 // Retained and Spliced Intron # retained_intron 2995343-2995363 (orient:-) max_ev_support = 1 # spliced_intron 2995343-2995363 (orient:-) max_ev_support = 1 scaffold_2 - intron 2995343-2995363 asmbl_22951,asmbl_22953 scaffold_2 - retained_intron 2995343-2995363 asmbl_22950,asmbl_22952 // Retained and Spliced Intron # retained_intron 2995448-2995510 (orient:-) max_ev_support = 1 # spliced_intron 2995448-2995510 (orient:-) max_ev_support = 1 scaffold_2 - intron 2995448-2995510 asmbl_22952 scaffold_2 - retained_intron 2995448-2995510 asmbl_22951 // Retained and Spliced Intron # retained_intron 2995469-2995489 (orient:-) max_ev_support = 1 # spliced_intron 2995469-2995489 (orient:-) max_ev_support = 1 scaffold_2 - intron 2995469-2995489 asmbl_22953 scaffold_2 - retained_intron 2995469-2995489 asmbl_22951 // Retained and Spliced Intron # retained_intron 2995469-2995510 (orient:-) max_ev_support = 1 # spliced_intron 2995469-2995510 (orient:-) max_ev_support = 1 scaffold_2 - intron 2995469-2995510 asmbl_22950 scaffold_2 - retained_intron 2995469-2995510 asmbl_22951 // Exon Skipping and Retention # skipped_exon 3347885-3348812 (orient:-) max_ev_support = 1 # retained_exon 3348276-3348362 (orient:-) max_ev_support = 1 scaffold_2 - retained_exons 3348276-3348362 asmbl_22974 scaffold_2 - intron_skips_exon 3347885-3348812 asmbl_22973 // Exon Skipping and Retention # skipped_exon 3758002-3759036 (orient:-) max_ev_support = 1 # retained_exon 3758310-3758515 (orient:-) max_ev_support = 2 scaffold_2 - retained_exons 3758310-3758515 asmbl_22995 scaffold_2 - intron_skips_exon 3758002-3759036 asmbl_22997 // Retained and Spliced Intron # retained_intron 3764034-3764093 (orient:-) max_ev_support = 1 # spliced_intron 3764034-3764093 (orient:-) max_ev_support = 1 scaffold_2 - intron 3764034-3764093 asmbl_22998 scaffold_2 - retained_intron 3764034-3764093 asmbl_22995 // Exon Skipping and Retention # skipped_exon 3862130-3864995 (orient:-) max_ev_support = 1 # retained_exon 3863661-3863789 (orient:-) max_ev_support = 2 scaffold_2 - retained_exons 3863661-3863789 asmbl_23007 scaffold_2 - intron_skips_exon 3862130-3864995 asmbl_23008 // Retained and Spliced Intron # retained_intron 4018804-4018989 (orient:-) max_ev_support = 1 # spliced_intron 4018804-4018989 (orient:-) max_ev_support = 1 scaffold_2 - intron 4018804-4018989 asmbl_23038 scaffold_2 - retained_intron 4018804-4018989 asmbl_23037 // Retained and Spliced Intron # retained_intron 4070470-4071066 (orient:-) max_ev_support = 2 # spliced_intron 4070470-4071066 (orient:-) max_ev_support = 3 scaffold_2 - intron 4070470-4071066 asmbl_23047 scaffold_2 - retained_intron 4070470-4071066 asmbl_23049 // Retained and Spliced Intron # retained_intron 4124203-4124621 (orient:-) max_ev_support = 2 # spliced_intron 4124203-4124621 (orient:-) max_ev_support = 3 scaffold_2 - intron 4124203-4124621 asmbl_23050,asmbl_23051 scaffold_2 - retained_intron 4124203-4124621 asmbl_23052 // Retained and Spliced Intron # retained_intron 4687220-4687254 (orient:-) max_ev_support = 2 # spliced_intron 4687220-4687254 (orient:-) max_ev_support = 1 scaffold_2 - intron 4687220-4687254 asmbl_23086,asmbl_23088 scaffold_2 - retained_intron 4687220-4687254 asmbl_23085,asmbl_23087 // Retained and Spliced Intron # retained_intron 4687374-4687408 (orient:-) max_ev_support = 1 # spliced_intron 4687374-4687408 (orient:-) max_ev_support = 1 scaffold_2 - intron 4687374-4687408 asmbl_23087,asmbl_23088 scaffold_2 - retained_intron 4687374-4687408 asmbl_23086 // Retained and Spliced Intron # retained_intron 4838417-4838709 (orient:-) max_ev_support = 1 # spliced_intron 4838417-4838709 (orient:-) max_ev_support = 1 scaffold_2 - intron 4838417-4838709 asmbl_23102,asmbl_23103 scaffold_2 - retained_intron 4838417-4838709 asmbl_23101 // Retained and Spliced Intron # retained_intron 4838798-4839029 (orient:-) max_ev_support = 1 # spliced_intron 4838798-4839029 (orient:-) max_ev_support = 1 scaffold_2 - intron 4838798-4839029 asmbl_23103 scaffold_2 - retained_intron 4838798-4839029 asmbl_23101,asmbl_23102 // Retained and Spliced Intron # retained_intron 4839101-4839436 (orient:-) max_ev_support = 2 # spliced_intron 4839101-4839436 (orient:-) max_ev_support = 1 scaffold_2 - intron 4839101-4839436 asmbl_23103 scaffold_2 - retained_intron 4839101-4839436 asmbl_23101,asmbl_23102 // Retained and Spliced Intron # retained_intron 4836305-4836534 (orient:-) max_ev_support = 1 # spliced_intron 4836305-4836534 (orient:-) max_ev_support = 1 scaffold_2 - intron 4836305-4836534 asmbl_23101,asmbl_23102,asmbl_23103 scaffold_2 - retained_intron 4836305-4836534 asmbl_23104 // Retained and Spliced Intron # retained_intron 5183182-5183574 (orient:-) max_ev_support = 2 # spliced_intron 5183182-5183574 (orient:-) max_ev_support = 1 scaffold_2 - intron 5183182-5183574 asmbl_23133 scaffold_2 - retained_intron 5183182-5183574 asmbl_23132 // Retained and Spliced Intron # retained_intron 5183182-5183932 (orient:-) max_ev_support = 2 # spliced_intron 5183182-5183932 (orient:-) max_ev_support = 1 scaffold_2 - intron 5183182-5183932 asmbl_23134 scaffold_2 - retained_intron 5183182-5183932 asmbl_23132 // Retained and Spliced Intron # retained_intron 5196150-5196244 (orient:-) max_ev_support = 2 # spliced_intron 5196150-5196244 (orient:-) max_ev_support = 2 scaffold_2 - intron 5196150-5196244 asmbl_23142 scaffold_2 - retained_intron 5196150-5196244 asmbl_23141 // Retained and Spliced Intron # retained_intron 5375992-5376203 (orient:-) max_ev_support = 2 # spliced_intron 5375992-5376203 (orient:-) max_ev_support = 1 scaffold_2 - intron 5375992-5376203 asmbl_23146 scaffold_2 - retained_intron 5375992-5376203 asmbl_23144 // Exon Skipping and Retention # skipped_exon 5374792-5376203 (orient:-) max_ev_support = 2 # retained_exon 5375679-5375991 (orient:-) max_ev_support = 1 scaffold_2 - retained_exons 5375679-5375991 asmbl_23146 scaffold_2 - intron_skips_exon 5374792-5376203 asmbl_23145 // Retained and Spliced Intron # retained_intron 5392157-5392284 (orient:-) max_ev_support = 1 # spliced_intron 5392157-5392284 (orient:-) max_ev_support = 2 scaffold_2 - intron 5392157-5392284 asmbl_23147,asmbl_23149 scaffold_2 - retained_intron 5392157-5392284 asmbl_23148 // Retained and Spliced Intron # retained_intron 5391853-5391989 (orient:-) max_ev_support = 1 # spliced_intron 5391853-5391989 (orient:-) max_ev_support = 2 scaffold_2 - intron 5391853-5391989 asmbl_23147,asmbl_23148 scaffold_2 - retained_intron 5391853-5391989 asmbl_23149 // Exon Skipping and Retention # skipped_exon 5706732-5707568 (orient:-) max_ev_support = 2 # retained_exon 5707054-5707146 (orient:-) max_ev_support = 1 scaffold_2 - retained_exons 5707054-5707146 asmbl_23157 scaffold_2 - intron_skips_exon 5706732-5707568 asmbl_23153 // Exon Skipping and Retention # skipped_exon 5706615-5707568 (orient:-) max_ev_support = 2 # retained_exon 5707054-5707146 (orient:-) max_ev_support = 1 scaffold_2 - retained_exons 5707054-5707146 asmbl_23157 scaffold_2 - intron_skips_exon 5706615-5707568 asmbl_23154 // Retained and Spliced Intron # retained_intron 6083683-6083943 (orient:-) max_ev_support = 2 # spliced_intron 6083683-6083943 (orient:-) max_ev_support = 3 scaffold_2 - intron 6083683-6083943 asmbl_23174 scaffold_2 - retained_intron 6083683-6083943 asmbl_23178 // Retained and Spliced Intron # retained_intron 6301801-6302073 (orient:-) max_ev_support = 4 # spliced_intron 6301801-6302073 (orient:-) max_ev_support = 3 scaffold_2 - intron 6301801-6302073 asmbl_23190 scaffold_2 - retained_intron 6301801-6302073 asmbl_23189 // Retained and Spliced Intron # retained_intron 6350944-6351030 (orient:-) max_ev_support = 2 # spliced_intron 6350944-6351030 (orient:-) max_ev_support = 3 scaffold_2 - intron 6350944-6351030 asmbl_23193 scaffold_2 - retained_intron 6350944-6351030 asmbl_23194 // Retained and Spliced Intron # retained_intron 6350944-6351046 (orient:-) max_ev_support = 2 # spliced_intron 6350944-6351046 (orient:-) max_ev_support = 1 scaffold_2 - intron 6350944-6351046 asmbl_23196 scaffold_2 - retained_intron 6350944-6351046 asmbl_23194 // Exon Skipping and Retention # skipped_exon 6510601-6512748 (orient:-) max_ev_support = 2 # retained_exon 6512443-6512496 (orient:-) max_ev_support = 1 scaffold_2 - retained_exons 6512443-6512496 asmbl_23211 scaffold_2 - intron_skips_exon 6510601-6512748 asmbl_23206 // Exon Skipping and Retention # skipped_exon 6510561-6512748 (orient:-) max_ev_support = 1 # retained_exon 6512443-6512496 (orient:-) max_ev_support = 1 scaffold_2 - retained_exons 6512443-6512496 asmbl_23211 scaffold_2 - intron_skips_exon 6510561-6512748 asmbl_23209,asmbl_23210 // Exon Skipping and Retention # skipped_exon 6639380-6640322 (orient:-) max_ev_support = 1 # retained_exon 6639916-6640008 (orient:-) max_ev_support = 2 scaffold_2 - retained_exons 6639916-6640008 asmbl_23212,asmbl_23214,asmbl_23216,asmbl_23218 scaffold_2 - intron_skips_exon 6639380-6640322 asmbl_23213,asmbl_23217 // Retained and Spliced Intron # retained_intron 6640625-6640693 (orient:-) max_ev_support = 1 # spliced_intron 6640625-6640693 (orient:-) max_ev_support = 2 scaffold_2 - intron 6640625-6640693 asmbl_23212,asmbl_23213,asmbl_23214,asmbl_23217,asmbl_23218 scaffold_2 - retained_intron 6640625-6640693 asmbl_23216 // Retained and Spliced Intron # retained_intron 6679470-6679625 (orient:-) max_ev_support = 3 # spliced_intron 6679470-6679625 (orient:-) max_ev_support = 3 scaffold_2 - intron 6679470-6679625 asmbl_23220 scaffold_2 - retained_intron 6679470-6679625 asmbl_23221 // Exon Skipping and Retention # skipped_exon 6760394-6761638 (orient:-) max_ev_support = 1 # retained_exon 6761484-6761550 (orient:-) max_ev_support = 2 scaffold_2 - retained_exons 6761484-6761550 asmbl_23230,asmbl_23231,asmbl_23232 scaffold_2 - intron_skips_exon 6760394-6761638 asmbl_23233 // Exon Skipping and Retention # skipped_exon 6761551-6762100 (orient:-) max_ev_support = 2 # retained_exon 6761639-6761771 (orient:-) max_ev_support = 2 scaffold_2 - retained_exons 6761639-6761771 asmbl_23231,asmbl_23233 scaffold_2 - intron_skips_exon 6761551-6762100 asmbl_23230 // Exon Skipping and Retention # skipped_exon 7403251-7404746 (orient:-) max_ev_support = 2 # retained_exon 7404267-7404302 (orient:-) max_ev_support = 3 scaffold_2 - retained_exons 7404267-7404302 asmbl_23250,asmbl_23251,asmbl_23252,asmbl_23253,asmbl_23255 scaffold_2 - intron_skips_exon 7403251-7404746 asmbl_23254,asmbl_23256 // Retained and Spliced Intron # retained_intron 7408928-7409546 (orient:-) max_ev_support = 3 # spliced_intron 7408928-7409546 (orient:-) max_ev_support = 2 scaffold_2 - intron 7408928-7409546 asmbl_23253,asmbl_23255 scaffold_2 - retained_intron 7408928-7409546 asmbl_23252,asmbl_23254,asmbl_23256,asmbl_23259 // Exon Skipping and Retention # skipped_exon 7407518-7409546 (orient:-) max_ev_support = 3 # retained_exon 7408529-7408927 (orient:-) max_ev_support = 2 scaffold_2 - retained_exons 7408529-7408927 asmbl_23253,asmbl_23255 scaffold_2 - intron_skips_exon 7407518-7409546 asmbl_23251,asmbl_23258 // Retained and Spliced Intron # retained_intron 7466796-7467432 (orient:-) max_ev_support = 3 # spliced_intron 7466796-7467432 (orient:-) max_ev_support = 1 scaffold_2 - intron 7466796-7467432 asmbl_23261 scaffold_2 - retained_intron 7466796-7467432 asmbl_23260,asmbl_23264 // Exon Skipping and Retention # skipped_exon 7469617-7471000 (orient:-) max_ev_support = 2 # retained_exon 7469728-7469821 (orient:-) max_ev_support = 3 scaffold_2 - retained_exons 7469728-7469821 asmbl_23260 scaffold_2 - intron_skips_exon 7469617-7471000 asmbl_23263 // Exon Skipping and Retention # skipped_exon 7469822-7471000 (orient:-) max_ev_support = 3 # retained_exon 7470022-7470198 (orient:-) max_ev_support = 1 scaffold_2 - retained_exons 7470022-7470198 asmbl_23261,asmbl_23266 scaffold_2 - intron_skips_exon 7469822-7471000 asmbl_23260 // Retained and Spliced Intron # retained_intron 7468981-7469051 (orient:-) max_ev_support = 1 # spliced_intron 7468981-7469051 (orient:-) max_ev_support = 3 scaffold_2 - intron 7468981-7469051 asmbl_23260,asmbl_23261,asmbl_23263,asmbl_23265 scaffold_2 - retained_intron 7468981-7469051 asmbl_23264,asmbl_23266 // Retained and Spliced Intron # retained_intron 7469156-7469515 (orient:-) max_ev_support = 1 # spliced_intron 7469156-7469515 (orient:-) max_ev_support = 2 scaffold_2 - intron 7469156-7469515 asmbl_23263 scaffold_2 - retained_intron 7469156-7469515 asmbl_23264,asmbl_23266 // Retained and Spliced Intron # retained_intron 7469205-7469515 (orient:-) max_ev_support = 1 # spliced_intron 7469205-7469515 (orient:-) max_ev_support = 3 scaffold_2 - intron 7469205-7469515 asmbl_23260,asmbl_23261,asmbl_23265 scaffold_2 - retained_intron 7469205-7469515 asmbl_23264,asmbl_23266 // Retained and Spliced Intron # retained_intron 7469630-7469727 (orient:-) max_ev_support = 1 # spliced_intron 7469630-7469727 (orient:-) max_ev_support = 3 scaffold_2 - intron 7469630-7469727 asmbl_23260,asmbl_23261,asmbl_23265,asmbl_23266 scaffold_2 - retained_intron 7469630-7469727 asmbl_23264 // Retained and Spliced Intron # retained_intron 7469822-7470021 (orient:-) max_ev_support = 1 # spliced_intron 7469822-7470021 (orient:-) max_ev_support = 1 scaffold_2 - intron 7469822-7470021 asmbl_23261,asmbl_23266 scaffold_2 - retained_intron 7469822-7470021 asmbl_23264,asmbl_23265 // Retained and Spliced Intron # retained_intron 7774792-7775188 (orient:-) max_ev_support = 6 # spliced_intron 7774792-7775188 (orient:-) max_ev_support = 2 scaffold_2 - intron 7774792-7775188 asmbl_23275,asmbl_23276 scaffold_2 - retained_intron 7774792-7775188 asmbl_23274 // Retained and Spliced Intron # retained_intron 7775380-7775866 (orient:-) max_ev_support = 2 # spliced_intron 7775380-7775866 (orient:-) max_ev_support = 2 scaffold_2 - intron 7775380-7775866 asmbl_23274,asmbl_23276 scaffold_2 - retained_intron 7775380-7775866 asmbl_23275 // Retained and Spliced Intron # retained_intron 7816023-7816120 (orient:-) max_ev_support = 2 # spliced_intron 7816023-7816120 (orient:-) max_ev_support = 3 scaffold_2 - intron 7816023-7816120 asmbl_23277 scaffold_2 - retained_intron 7816023-7816120 asmbl_23279 // Retained and Spliced Intron # retained_intron 7827117-7827319 (orient:-) max_ev_support = 3 # spliced_intron 7827117-7827319 (orient:-) max_ev_support = 3 scaffold_2 - intron 7827117-7827319 asmbl_23281,asmbl_23284 scaffold_2 - retained_intron 7827117-7827319 asmbl_23282 // Retained and Spliced Intron # retained_intron 7827162-7827319 (orient:-) max_ev_support = 3 # spliced_intron 7827162-7827319 (orient:-) max_ev_support = 2 scaffold_2 - intron 7827162-7827319 asmbl_23283,asmbl_23285 scaffold_2 - retained_intron 7827162-7827319 asmbl_23282 // Exon Skipping and Retention # skipped_exon 7863293-7865249 (orient:-) max_ev_support = 2 # retained_exon 7864425-7864751 (orient:-) max_ev_support = 2 scaffold_2 - retained_exons 7864425-7864751 asmbl_23287 scaffold_2 - intron_skips_exon 7863293-7865249 asmbl_23288 // Retained and Spliced Intron # retained_intron 7884473-7884576 (orient:-) max_ev_support = 2 # spliced_intron 7884473-7884576 (orient:-) max_ev_support = 3 scaffold_2 - intron 7884473-7884576 asmbl_23291 scaffold_2 - retained_intron 7884473-7884576 asmbl_23292 // Retained and Spliced Intron # retained_intron 7925080-7925321 (orient:-) max_ev_support = 1 # spliced_intron 7925080-7925321 (orient:-) max_ev_support = 2 scaffold_2 - intron 7925080-7925321 asmbl_23295,asmbl_23298 scaffold_2 - retained_intron 7925080-7925321 asmbl_23296 // Retained and Spliced Intron # retained_intron 7923087-7923870 (orient:-) max_ev_support = 1 # spliced_intron 7923087-7923870 (orient:-) max_ev_support = 2 scaffold_2 - intron 7923087-7923870 asmbl_23295,asmbl_23296,asmbl_23298,asmbl_23299 scaffold_2 - retained_intron 7923087-7923870 asmbl_23297 // Retained and Spliced Intron # retained_intron 7924289-7924370 (orient:-) max_ev_support = 1 # spliced_intron 7924289-7924370 (orient:-) max_ev_support = 2 scaffold_2 - intron 7924289-7924370 asmbl_23295,asmbl_23296 scaffold_2 - retained_intron 7924289-7924370 asmbl_23298,asmbl_23299 // Retained and Spliced Intron # retained_intron 7924499-7924931 (orient:-) max_ev_support = 1 # spliced_intron 7924499-7924931 (orient:-) max_ev_support = 2 scaffold_2 - intron 7924499-7924931 asmbl_23295,asmbl_23296,asmbl_23298 scaffold_2 - retained_intron 7924499-7924931 asmbl_23299 // Retained and Spliced Intron # retained_intron 8055440-8055585 (orient:-) max_ev_support = 2 # spliced_intron 8055440-8055585 (orient:-) max_ev_support = 2 scaffold_2 - intron 8055440-8055585 asmbl_23303 scaffold_2 - retained_intron 8055440-8055585 asmbl_23305 // Retained and Spliced Intron # retained_intron 8055440-8055626 (orient:-) max_ev_support = 2 # spliced_intron 8055440-8055626 (orient:-) max_ev_support = 2 scaffold_2 - intron 8055440-8055626 asmbl_23304 scaffold_2 - retained_intron 8055440-8055626 asmbl_23305 // Retained and Spliced Intron # retained_intron 8055440-8055709 (orient:-) max_ev_support = 2 # spliced_intron 8055440-8055709 (orient:-) max_ev_support = 1 scaffold_2 - intron 8055440-8055709 asmbl_23306 scaffold_2 - retained_intron 8055440-8055709 asmbl_23305 // Retained and Spliced Intron # retained_intron 8055011-8055080 (orient:-) max_ev_support = 1 # spliced_intron 8055011-8055080 (orient:-) max_ev_support = 2 scaffold_2 - intron 8055011-8055080 asmbl_23302,asmbl_23303,asmbl_23304,asmbl_23305,asmbl_23306 scaffold_2 - retained_intron 8055011-8055080 asmbl_23307 // Retained and Spliced Intron # retained_intron 8055222-8055347 (orient:-) max_ev_support = 1 # spliced_intron 8055222-8055347 (orient:-) max_ev_support = 2 scaffold_2 - intron 8055222-8055347 asmbl_23302,asmbl_23303,asmbl_23304,asmbl_23305,asmbl_23306 scaffold_2 - retained_intron 8055222-8055347 asmbl_23307 // Retained and Spliced Intron # retained_intron 8059380-8059478 (orient:-) max_ev_support = 3 # spliced_intron 8059380-8059478 (orient:-) max_ev_support = 1 scaffold_2 - intron 8059380-8059478 asmbl_23310 scaffold_2 - retained_intron 8059380-8059478 asmbl_23308 // Retained and Spliced Intron # retained_intron 8059384-8059478 (orient:-) max_ev_support = 3 # spliced_intron 8059384-8059478 (orient:-) max_ev_support = 2 scaffold_2 - intron 8059384-8059478 asmbl_23309 scaffold_2 - retained_intron 8059384-8059478 asmbl_23308 // Retained and Spliced Intron # retained_intron 8148213-8148395 (orient:-) max_ev_support = 2 # spliced_intron 8148213-8148395 (orient:-) max_ev_support = 2 scaffold_2 - intron 8148213-8148395 asmbl_23317 scaffold_2 - retained_intron 8148213-8148395 asmbl_23316 // Retained and Spliced Intron # retained_intron 8148213-8148438 (orient:-) max_ev_support = 2 # spliced_intron 8148213-8148438 (orient:-) max_ev_support = 1 scaffold_2 - intron 8148213-8148438 asmbl_23318 scaffold_2 - retained_intron 8148213-8148438 asmbl_23316 // Retained and Spliced Intron # retained_intron 8787993-8788059 (orient:-) max_ev_support = 4 # spliced_intron 8787993-8788059 (orient:-) max_ev_support = 2 scaffold_2 - intron 8787993-8788059 asmbl_23335 scaffold_2 - retained_intron 8787993-8788059 asmbl_23334 // Exon Skipping and Retention # skipped_exon 9140005-9140289 (orient:-) max_ev_support = 1 # retained_exon 9140183-9140186 (orient:-) max_ev_support = 1 scaffold_2 - retained_exons 9140183-9140186 asmbl_23352,asmbl_23353 scaffold_2 - intron_skips_exon 9140005-9140289 asmbl_23354,asmbl_23355 // Exon Skipping and Retention # skipped_exon 9189964-9190602 (orient:-) max_ev_support = 2 # retained_exon 9190285-9190308 (orient:-) max_ev_support = 2 scaffold_2 - retained_exons 9190285-9190308 asmbl_23359,asmbl_23363,asmbl_23364 scaffold_2 - intron_skips_exon 9189964-9190602 asmbl_23360,asmbl_23362,asmbl_23365 // Exon Skipping and Retention # skipped_exon 9195241-9195673 (orient:-) max_ev_support = 2 # retained_exon 9195437-9195535 (orient:-) max_ev_support = 2 scaffold_2 - retained_exons 9195437-9195535 asmbl_23359,asmbl_23362,asmbl_23366 scaffold_2 - intron_skips_exon 9195241-9195673 asmbl_23360,asmbl_23363 // Retained and Spliced Intron # retained_intron 9191502-9191609 (orient:-) max_ev_support = 1 # spliced_intron 9191502-9191609 (orient:-) max_ev_support = 2 scaffold_2 - intron 9191502-9191609 asmbl_23359,asmbl_23360,asmbl_23362,asmbl_23363,asmbl_23366 scaffold_2 - retained_intron 9191502-9191609 asmbl_23364,asmbl_23365 // Retained and Spliced Intron # retained_intron 9191729-9191859 (orient:-) max_ev_support = 1 # spliced_intron 9191729-9191859 (orient:-) max_ev_support = 2 scaffold_2 - intron 9191729-9191859 asmbl_23359,asmbl_23360,asmbl_23362,asmbl_23363,asmbl_23366 scaffold_2 - retained_intron 9191729-9191859 asmbl_23364,asmbl_23365 // Retained and Spliced Intron # retained_intron 9262531-9262914 (orient:-) max_ev_support = 2 # spliced_intron 9262531-9262914 (orient:-) max_ev_support = 2 scaffold_2 - intron 9262531-9262914 asmbl_23372 scaffold_2 - retained_intron 9262531-9262914 asmbl_23371,asmbl_23373 // Retained and Spliced Intron # retained_intron 9322220-9323761 (orient:-) max_ev_support = 3 # spliced_intron 9322220-9323761 (orient:-) max_ev_support = 1 scaffold_2 - intron 9322220-9323761 asmbl_23386 scaffold_2 - retained_intron 9322220-9323761 asmbl_23384 // Retained and Spliced Intron # retained_intron 9322557-9323761 (orient:-) max_ev_support = 1 # spliced_intron 9322557-9323761 (orient:-) max_ev_support = 1 scaffold_2 - intron 9322557-9323761 asmbl_23385 scaffold_2 - retained_intron 9322557-9323761 asmbl_23384 // Retained and Spliced Intron # retained_intron 9322568-9323761 (orient:-) max_ev_support = 1 # spliced_intron 9322568-9323761 (orient:-) max_ev_support = 2 scaffold_2 - intron 9322568-9323761 asmbl_23383 scaffold_2 - retained_intron 9322568-9323761 asmbl_23384 // Exon Skipping and Retention # skipped_exon 9816705-9818285 (orient:-) max_ev_support = 2 # retained_exon 9817364-9817425 (orient:-) max_ev_support = 2 scaffold_2 - retained_exons 9817364-9817425 asmbl_23391 scaffold_2 - intron_skips_exon 9816705-9818285 asmbl_23390 // Exon Skipping and Retention # skipped_exon 9860700-9863107 (orient:-) max_ev_support = 1 # retained_exon 9862236-9862343 (orient:-) max_ev_support = 2 scaffold_2 - retained_exons 9862236-9862343 asmbl_23395 scaffold_2 - intron_skips_exon 9860700-9863107 asmbl_23397 // Retained and Spliced Intron # retained_intron 9886597-9886832 (orient:-) max_ev_support = 2 # spliced_intron 9886597-9886832 (orient:-) max_ev_support = 1 scaffold_2 - intron 9886597-9886832 asmbl_23402 scaffold_2 - retained_intron 9886597-9886832 asmbl_23400,asmbl_23401 // Retained and Spliced Intron # retained_intron 10373407-10373567 (orient:-) max_ev_support = 2 # spliced_intron 10373407-10373567 (orient:-) max_ev_support = 1 scaffold_2 - intron 10373407-10373567 asmbl_23417 scaffold_2 - retained_intron 10373407-10373567 asmbl_23415,asmbl_23416,asmbl_23418 // Exon Skipping and Retention # skipped_exon 10637962-10638369 (orient:-) max_ev_support = 1 # retained_exon 10638080-10638130 (orient:-) max_ev_support = 2 scaffold_2 - retained_exons 10638080-10638130 asmbl_23426,asmbl_23427,asmbl_23430 scaffold_2 - intron_skips_exon 10637962-10638369 asmbl_23428,asmbl_23429 // Retained and Spliced Intron # retained_intron 10640331-10640648 (orient:-) max_ev_support = 2 # spliced_intron 10640331-10640648 (orient:-) max_ev_support = 1 scaffold_2 - intron 10640331-10640648 asmbl_23428,asmbl_23430 scaffold_2 - retained_intron 10640331-10640648 asmbl_23426,asmbl_23427,asmbl_23429 // Retained and Spliced Intron # retained_intron 10635940-10636060 (orient:-) max_ev_support = 2 # spliced_intron 10635940-10636060 (orient:-) max_ev_support = 2 scaffold_2 - intron 10635940-10636060 asmbl_23426,asmbl_23428,asmbl_23429,asmbl_23430 scaffold_2 - retained_intron 10635940-10636060 asmbl_23427 // Retained and Spliced Intron # retained_intron 10658018-10658230 (orient:-) max_ev_support = 1 # spliced_intron 10658018-10658230 (orient:-) max_ev_support = 2 scaffold_2 - intron 10658018-10658230 asmbl_23436 scaffold_2 - retained_intron 10658018-10658230 asmbl_23438 // Retained and Spliced Intron # retained_intron 11199609-11200469 (orient:-) max_ev_support = 2 # spliced_intron 11199609-11200469 (orient:-) max_ev_support = 2 scaffold_2 - intron 11199609-11200469 asmbl_23446 scaffold_2 - retained_intron 11199609-11200469 asmbl_23447 // Retained and Spliced Intron # retained_intron 11448324-11448569 (orient:-) max_ev_support = 3 # spliced_intron 11448324-11448569 (orient:-) max_ev_support = 2 scaffold_2 - intron 11448324-11448569 asmbl_23449 scaffold_2 - retained_intron 11448324-11448569 asmbl_23448 // Retained and Spliced Intron # retained_intron 12645103-12645138 (orient:-) max_ev_support = 1 # spliced_intron 12645103-12645138 (orient:-) max_ev_support = 1 scaffold_2 - intron 12645103-12645138 asmbl_23468 scaffold_2 - retained_intron 12645103-12645138 asmbl_23469 // Exon Skipping and Retention # skipped_exon 12653089-12653786 (orient:-) max_ev_support = 3 # retained_exon 12653219-12653271 (orient:-) max_ev_support = 3 scaffold_2 - retained_exons 12653219-12653271 asmbl_23474 scaffold_2 - intron_skips_exon 12653089-12653786 asmbl_23473 // Retained and Spliced Intron # retained_intron 12727849-12728348 (orient:-) max_ev_support = 1 # spliced_intron 12727849-12728348 (orient:-) max_ev_support = 2 scaffold_2 - intron 12727849-12728348 asmbl_23478 scaffold_2 - retained_intron 12727849-12728348 asmbl_23479 // Retained and Spliced Intron # retained_intron 13071028-13071351 (orient:-) max_ev_support = 1 # spliced_intron 13071028-13071351 (orient:-) max_ev_support = 2 scaffold_2 - intron 13071028-13071351 asmbl_23488,asmbl_23489,asmbl_23492 scaffold_2 - retained_intron 13071028-13071351 asmbl_23490,asmbl_23491,asmbl_23493 // Exon Skipping and Retention # skipped_exon 13393860-13394379 (orient:-) max_ev_support = 1 # retained_exon 13394140-13394233 (orient:-) max_ev_support = 3 scaffold_2 - retained_exons 13394140-13394233 asmbl_23511 scaffold_2 - intron_skips_exon 13393860-13394379 asmbl_23512 // Retained and Spliced Intron # retained_intron 13403876-13404166 (orient:-) max_ev_support = 3 # spliced_intron 13403876-13404166 (orient:-) max_ev_support = 2 scaffold_2 - intron 13403876-13404166 asmbl_23515 scaffold_2 - retained_intron 13403876-13404166 asmbl_23514 // Exon Skipping and Retention # skipped_exon 13445747-13448231 (orient:-) max_ev_support = 1 # retained_exon 13445854-13446506 (orient:-) max_ev_support = 2 scaffold_2 - retained_exons 13445854-13445948,13446064-13446191,13446392-13446506 asmbl_23516,asmbl_23517 scaffold_2 - intron_skips_exon 13445747-13448231 asmbl_23519 // Retained and Spliced Intron # retained_intron 13445747-13445853 (orient:-) max_ev_support = 1 # spliced_intron 13445747-13445853 (orient:-) max_ev_support = 2 scaffold_2 - intron 13445747-13445853 asmbl_23516,asmbl_23517 scaffold_2 - retained_intron 13445747-13445853 asmbl_23518 // Retained and Spliced Intron # retained_intron 13754062-13754214 (orient:-) max_ev_support = 1 # spliced_intron 13754062-13754214 (orient:-) max_ev_support = 2 scaffold_2 - intron 13754062-13754214 asmbl_23524,asmbl_23526 scaffold_2 - retained_intron 13754062-13754214 asmbl_23525 // Retained and Spliced Intron # retained_intron 13754726-13754863 (orient:-) max_ev_support = 1 # spliced_intron 13754726-13754863 (orient:-) max_ev_support = 2 scaffold_2 - intron 13754726-13754863 asmbl_23524,asmbl_23525 scaffold_2 - retained_intron 13754726-13754863 asmbl_23526 // Exon Skipping and Retention # skipped_exon 13896835-13897401 (orient:-) max_ev_support = 2 # retained_exon 13897141-13897181 (orient:-) max_ev_support = 1 scaffold_2 - retained_exons 13897141-13897181 asmbl_23539,asmbl_23541 scaffold_2 - intron_skips_exon 13896835-13897401 asmbl_23537 // Retained and Spliced Intron # retained_intron 13961990-13962517 (orient:-) max_ev_support = 2 # spliced_intron 13961990-13962517 (orient:-) max_ev_support = 2 scaffold_2 - intron 13961990-13962517 asmbl_23550 scaffold_2 - retained_intron 13961990-13962517 asmbl_23549 // Exon Skipping and Retention # skipped_exon 14014078-14014694 (orient:-) max_ev_support = 3 # retained_exon 14014162-14014256 (orient:-) max_ev_support = 3 scaffold_2 - retained_exons 14014162-14014256 asmbl_23556 scaffold_2 - intron_skips_exon 14014078-14014694 asmbl_23555 // Exon Skipping and Retention # skipped_exon 14136270-14137059 (orient:-) max_ev_support = 1 # retained_exon 14136505-14136572 (orient:-) max_ev_support = 2 scaffold_2 - retained_exons 14136505-14136572 asmbl_23558,asmbl_23559,asmbl_23562 scaffold_2 - intron_skips_exon 14136270-14137059 asmbl_23560 // Retained and Spliced Intron # retained_intron 14132199-14132279 (orient:-) max_ev_support = 1 # spliced_intron 14132199-14132279 (orient:-) max_ev_support = 2 scaffold_2 - intron 14132199-14132279 asmbl_23558,asmbl_23560 scaffold_2 - retained_intron 14132199-14132279 asmbl_23559 // Retained and Spliced Intron # retained_intron 14191448-14192045 (orient:-) max_ev_support = 2 # spliced_intron 14191448-14192045 (orient:-) max_ev_support = 1 scaffold_2 - intron 14191448-14192045 asmbl_23566,asmbl_23567,asmbl_23568,asmbl_23569,asmbl_23570 scaffold_2 - retained_intron 14191448-14192045 asmbl_23564,asmbl_23565,asmbl_23571 // Retained and Spliced Intron # retained_intron 14192137-14192314 (orient:-) max_ev_support = 2 # spliced_intron 14192137-14192314 (orient:-) max_ev_support = 1 scaffold_2 - intron 14192137-14192314 asmbl_23566,asmbl_23567,asmbl_23568,asmbl_23569,asmbl_23570,asmbl_23571 scaffold_2 - retained_intron 14192137-14192314 asmbl_23564,asmbl_23565 // Retained and Spliced Intron # retained_intron 14190516-14191409 (orient:-) max_ev_support = 2 # spliced_intron 14190516-14191409 (orient:-) max_ev_support = 2 scaffold_2 - intron 14190516-14191409 asmbl_23564,asmbl_23566,asmbl_23567,asmbl_23568,asmbl_23569,asmbl_23570 scaffold_2 - retained_intron 14190516-14191409 asmbl_23565,asmbl_23571 // Retained and Spliced Intron # retained_intron 14193481-14193569 (orient:-) max_ev_support = 1 # spliced_intron 14193481-14193569 (orient:-) max_ev_support = 1 scaffold_2 - intron 14193481-14193569 asmbl_23570 scaffold_2 - retained_intron 14193481-14193569 asmbl_23566,asmbl_23567,asmbl_23568,asmbl_23569,asmbl_23571 // Retained and Spliced Intron # retained_intron 14193588-14193682 (orient:-) max_ev_support = 1 # spliced_intron 14193588-14193682 (orient:-) max_ev_support = 1 scaffold_2 - intron 14193588-14193682 asmbl_23567,asmbl_23569,asmbl_23570,asmbl_23571 scaffold_2 - retained_intron 14193588-14193682 asmbl_23566 // Retained and Spliced Intron # retained_intron 14193588-14193798 (orient:-) max_ev_support = 1 # spliced_intron 14193588-14193798 (orient:-) max_ev_support = 1 scaffold_2 - intron 14193588-14193798 asmbl_23568 scaffold_2 - retained_intron 14193588-14193798 asmbl_23566 // Retained and Spliced Intron # retained_intron 14193694-14193809 (orient:-) max_ev_support = 1 # spliced_intron 14193694-14193809 (orient:-) max_ev_support = 1 scaffold_2 - intron 14193694-14193809 asmbl_23569,asmbl_23570 scaffold_2 - retained_intron 14193694-14193809 asmbl_23566,asmbl_23567,asmbl_23571 // Retained and Spliced Intron # retained_intron 14193353-14193458 (orient:-) max_ev_support = 1 # spliced_intron 14193353-14193458 (orient:-) max_ev_support = 1 scaffold_2 - intron 14193353-14193458 asmbl_23566,asmbl_23567,asmbl_23568,asmbl_23570,asmbl_23571 scaffold_2 - retained_intron 14193353-14193458 asmbl_23569 // Exon Skipping and Retention # skipped_exon 14193588-14193798 (orient:-) max_ev_support = 1 # retained_exon 14193683-14193693 (orient:-) max_ev_support = 1 scaffold_2 - retained_exons 14193683-14193693 asmbl_23569,asmbl_23570 scaffold_2 - intron_skips_exon 14193588-14193798 asmbl_23568 // Retained and Spliced Intron # retained_intron 14203673-14203696 (orient:-) max_ev_support = 1 # spliced_intron 14203673-14203696 (orient:-) max_ev_support = 1 scaffold_2 - intron 14203673-14203696 asmbl_23577 scaffold_2 - retained_intron 14203673-14203696 asmbl_23576,asmbl_23578 // Retained and Spliced Intron # retained_intron 14221018-14221150 (orient:-) max_ev_support = 2 # spliced_intron 14221018-14221150 (orient:-) max_ev_support = 1 scaffold_2 - intron 14221018-14221150 asmbl_23583,asmbl_23584 scaffold_2 - retained_intron 14221018-14221150 asmbl_23580,asmbl_23582 // Retained and Spliced Intron # retained_intron 14220662-14220786 (orient:-) max_ev_support = 1 # spliced_intron 14220662-14220786 (orient:-) max_ev_support = 2 scaffold_2 - intron 14220662-14220786 asmbl_23580,asmbl_23583,asmbl_23584 scaffold_2 - retained_intron 14220662-14220786 asmbl_23582,asmbl_23585 // Retained and Spliced Intron # retained_intron 14220832-14221010 (orient:-) max_ev_support = 1 # spliced_intron 14220832-14221010 (orient:-) max_ev_support = 2 scaffold_2 - intron 14220832-14221010 asmbl_23580,asmbl_23583,asmbl_23584,asmbl_23585 scaffold_2 - retained_intron 14220832-14221010 asmbl_23582 // Retained and Spliced Intron # retained_intron 14219858-14219944 (orient:-) max_ev_support = 1 # spliced_intron 14219858-14219944 (orient:-) max_ev_support = 2 scaffold_2 - intron 14219858-14219944 asmbl_23580,asmbl_23582,asmbl_23583 scaffold_2 - retained_intron 14219858-14219944 asmbl_23584 // Exon Skipping and Retention # skipped_exon 14228244-14228598 (orient:-) max_ev_support = 1 # retained_exon 14228449-14228452 (orient:-) max_ev_support = 1 scaffold_2 - retained_exons 14228449-14228452 asmbl_23586 scaffold_2 - intron_skips_exon 14228244-14228598 asmbl_23587 // Exon Skipping and Retention # skipped_exon 14231852-14232094 (orient:-) max_ev_support = 1 # retained_exon 14231966-14231969 (orient:-) max_ev_support = 1 scaffold_2 - retained_exons 14231966-14231969 asmbl_23588 scaffold_2 - intron_skips_exon 14231852-14232094 asmbl_23590 // Exon Skipping and Retention # skipped_exon 14342781-14343126 (orient:-) max_ev_support = 1 # retained_exon 14342901-14343035 (orient:-) max_ev_support = 2 scaffold_2 - retained_exons 14342901-14343035 asmbl_23595 scaffold_2 - intron_skips_exon 14342781-14343126 asmbl_23597 // Retained and Spliced Intron # retained_intron 14363482-14363566 (orient:-) max_ev_support = 1 # spliced_intron 14363482-14363566 (orient:-) max_ev_support = 2 scaffold_2 - intron 14363482-14363566 asmbl_23598 scaffold_2 - retained_intron 14363482-14363566 asmbl_23599 // Retained and Spliced Intron # retained_intron 14462273-14462391 (orient:-) max_ev_support = 1 # spliced_intron 14462273-14462391 (orient:-) max_ev_support = 2 scaffold_2 - intron 14462273-14462391 asmbl_23603 scaffold_2 - retained_intron 14462273-14462391 asmbl_23604 // Exon Skipping and Retention # skipped_exon 15507893-15509287 (orient:-) max_ev_support = 1 # retained_exon 15508154-15508400 (orient:-) max_ev_support = 1 scaffold_2 - retained_exons 15508154-15508400 asmbl_23640 scaffold_2 - intron_skips_exon 15507893-15509287 asmbl_23638 // Retained and Spliced Intron # retained_intron 15805763-15805856 (orient:-) max_ev_support = 2 # spliced_intron 15805763-15805856 (orient:-) max_ev_support = 1 scaffold_2 - intron 15805763-15805856 asmbl_23660 scaffold_2 - retained_intron 15805763-15805856 asmbl_23659 // Retained and Spliced Intron # retained_intron 16087681-16088030 (orient:-) max_ev_support = 2 # spliced_intron 16087681-16088030 (orient:-) max_ev_support = 2 scaffold_2 - intron 16087681-16088030 asmbl_23665,asmbl_23668,asmbl_23669,asmbl_23670,asmbl_23671 scaffold_2 - retained_intron 16087681-16088030 asmbl_23666 // Retained and Spliced Intron # retained_intron 16084074-16084172 (orient:-) max_ev_support = 1 # spliced_intron 16084074-16084172 (orient:-) max_ev_support = 2 scaffold_2 - intron 16084074-16084172 asmbl_23665,asmbl_23668,asmbl_23670,asmbl_23671 scaffold_2 - retained_intron 16084074-16084172 asmbl_23669 // Retained and Spliced Intron # retained_intron 16085317-16085688 (orient:-) max_ev_support = 1 # spliced_intron 16085317-16085688 (orient:-) max_ev_support = 2 scaffold_2 - intron 16085317-16085688 asmbl_23665,asmbl_23668,asmbl_23670 scaffold_2 - retained_intron 16085317-16085688 asmbl_23669,asmbl_23671 // Retained and Spliced Intron # retained_intron 16101801-16102006 (orient:-) max_ev_support = 2 # spliced_intron 16101801-16102006 (orient:-) max_ev_support = 2 scaffold_2 - intron 16101801-16102006 asmbl_23676 scaffold_2 - retained_intron 16101801-16102006 asmbl_23675 // Retained and Spliced Intron # retained_intron 16342563-16343039 (orient:-) max_ev_support = 1 # spliced_intron 16342563-16343039 (orient:-) max_ev_support = 2 scaffold_2 - intron 16342563-16343039 asmbl_23683,asmbl_23685 scaffold_2 - retained_intron 16342563-16343039 asmbl_23684 // Retained and Spliced Intron # retained_intron 16414057-16414370 (orient:-) max_ev_support = 1 # spliced_intron 16414057-16414370 (orient:-) max_ev_support = 2 scaffold_2 - intron 16414057-16414370 asmbl_23688,asmbl_23690,asmbl_23691,asmbl_23693 scaffold_2 - retained_intron 16414057-16414370 asmbl_23689,asmbl_23694 // Retained and Spliced Intron # retained_intron 16414060-16414370 (orient:-) max_ev_support = 1 # spliced_intron 16414060-16414370 (orient:-) max_ev_support = 1 scaffold_2 - intron 16414060-16414370 asmbl_23692 scaffold_2 - retained_intron 16414060-16414370 asmbl_23689,asmbl_23694 // Retained and Spliced Intron # retained_intron 16414525-16414765 (orient:-) max_ev_support = 1 # spliced_intron 16414525-16414765 (orient:-) max_ev_support = 2 scaffold_2 - intron 16414525-16414765 asmbl_23688,asmbl_23690,asmbl_23691,asmbl_23692,asmbl_23694 scaffold_2 - retained_intron 16414525-16414765 asmbl_23689 // Retained and Spliced Intron # retained_intron 16413485-16413596 (orient:-) max_ev_support = 1 # spliced_intron 16413485-16413596 (orient:-) max_ev_support = 2 scaffold_2 - intron 16413485-16413596 asmbl_23688,asmbl_23689,asmbl_23691,asmbl_23692 scaffold_2 - retained_intron 16413485-16413596 asmbl_23690 // Retained and Spliced Intron # retained_intron 17014420-17014564 (orient:-) max_ev_support = 3 # spliced_intron 17014420-17014564 (orient:-) max_ev_support = 2 scaffold_2 - intron 17014420-17014564 asmbl_23708 scaffold_2 - retained_intron 17014420-17014564 asmbl_23707 // Retained and Spliced Intron # retained_intron 17234631-17234740 (orient:-) max_ev_support = 3 # spliced_intron 17234631-17234740 (orient:-) max_ev_support = 1 scaffold_2 - intron 17234631-17234740 asmbl_23718 scaffold_2 - retained_intron 17234631-17234740 asmbl_23717 // Retained and Spliced Intron # retained_intron 17237710-17237871 (orient:-) max_ev_support = 2 # spliced_intron 17237710-17237871 (orient:-) max_ev_support = 2 scaffold_2 - intron 17237710-17237871 asmbl_23719 scaffold_2 - retained_intron 17237710-17237871 asmbl_23720 // Retained and Spliced Intron # retained_intron 17445635-17445797 (orient:-) max_ev_support = 2 # spliced_intron 17445635-17445797 (orient:-) max_ev_support = 1 scaffold_2 - intron 17445635-17445797 asmbl_23725 scaffold_2 - retained_intron 17445635-17445797 asmbl_23724 // Retained and Spliced Intron # retained_intron 17708369-17708455 (orient:-) max_ev_support = 1 # spliced_intron 17708369-17708455 (orient:-) max_ev_support = 2 scaffold_2 - intron 17708369-17708455 asmbl_23738,asmbl_23741 scaffold_2 - retained_intron 17708369-17708455 asmbl_23739,asmbl_23740 // Retained and Spliced Intron # retained_intron 17838616-17838702 (orient:-) max_ev_support = 1 # spliced_intron 17838616-17838702 (orient:-) max_ev_support = 2 scaffold_2 - intron 17838616-17838702 asmbl_23754 scaffold_2 - retained_intron 17838616-17838702 asmbl_23757 // Retained and Spliced Intron # retained_intron 17932892-17932980 (orient:-) max_ev_support = 2 # spliced_intron 17932892-17932980 (orient:-) max_ev_support = 1 scaffold_2 - intron 17932892-17932980 asmbl_23761 scaffold_2 - retained_intron 17932892-17932980 asmbl_23760 // Retained and Spliced Intron # retained_intron 18591305-18591383 (orient:-) max_ev_support = 2 # spliced_intron 18591305-18591383 (orient:-) max_ev_support = 2 scaffold_2 - intron 18591305-18591383 asmbl_23798 scaffold_2 - retained_intron 18591305-18591383 asmbl_23799 // Retained and Spliced Intron # retained_intron 18610276-18610515 (orient:-) max_ev_support = 3 # spliced_intron 18610276-18610515 (orient:-) max_ev_support = 3 scaffold_2 - intron 18610276-18610515 asmbl_23801 scaffold_2 - retained_intron 18610276-18610515 asmbl_23800 // Retained and Spliced Intron # retained_intron 18610276-18610519 (orient:-) max_ev_support = 3 # spliced_intron 18610276-18610519 (orient:-) max_ev_support = 1 scaffold_2 - intron 18610276-18610519 asmbl_23802 scaffold_2 - retained_intron 18610276-18610519 asmbl_23800 // Retained and Spliced Intron # retained_intron 18614248-18614705 (orient:-) max_ev_support = 1 # spliced_intron 18614248-18614705 (orient:-) max_ev_support = 2 scaffold_2 - intron 18614248-18614705 asmbl_23804 scaffold_2 - retained_intron 18614248-18614705 asmbl_23808 // Retained and Spliced Intron # retained_intron 18614288-18614705 (orient:-) max_ev_support = 1 # spliced_intron 18614288-18614705 (orient:-) max_ev_support = 1 scaffold_2 - intron 18614288-18614705 asmbl_23807 scaffold_2 - retained_intron 18614288-18614705 asmbl_23808 // Retained and Spliced Intron # retained_intron 18730231-18730319 (orient:-) max_ev_support = 1 # spliced_intron 18730231-18730319 (orient:-) max_ev_support = 2 scaffold_2 - intron 18730231-18730319 asmbl_23817 scaffold_2 - retained_intron 18730231-18730319 asmbl_23818 // Exon Skipping and Retention # skipped_exon 19025086-19025969 (orient:-) max_ev_support = 1 # retained_exon 19025541-19025614 (orient:-) max_ev_support = 1 scaffold_2 - retained_exons 19025541-19025614 asmbl_23846 scaffold_2 - intron_skips_exon 19025086-19025969 asmbl_23847 // Retained and Spliced Intron # retained_intron 19299385-19299486 (orient:-) max_ev_support = 3 # spliced_intron 19299385-19299486 (orient:-) max_ev_support = 2 scaffold_2 - intron 19299385-19299486 asmbl_23861 scaffold_2 - retained_intron 19299385-19299486 asmbl_23859,asmbl_23863 // Retained and Spliced Intron # retained_intron 19521884-19522271 (orient:-) max_ev_support = 5 # spliced_intron 19521884-19522271 (orient:-) max_ev_support = 1 scaffold_2 - intron 19521884-19522271 asmbl_23871 scaffold_2 - retained_intron 19521884-19522271 asmbl_23870 // Retained and Spliced Intron # retained_intron 19884108-19884202 (orient:-) max_ev_support = 1 # spliced_intron 19884108-19884202 (orient:-) max_ev_support = 2 scaffold_2 - intron 19884108-19884202 asmbl_23874 scaffold_2 - retained_intron 19884108-19884202 asmbl_23876 // Retained and Spliced Intron # retained_intron 19892061-19892133 (orient:-) max_ev_support = 1 # spliced_intron 19892061-19892133 (orient:-) max_ev_support = 1 scaffold_2 - intron 19892061-19892133 asmbl_23878 scaffold_2 - retained_intron 19892061-19892133 asmbl_23877 // Retained and Spliced Intron # retained_intron 20429623-20429784 (orient:-) max_ev_support = 1 # spliced_intron 20429623-20429784 (orient:-) max_ev_support = 2 scaffold_2 - intron 20429623-20429784 asmbl_23903 scaffold_2 - retained_intron 20429623-20429784 asmbl_23904 // Exon Skipping and Retention # skipped_exon 30795-32149 (orient:+) max_ev_support = 2 # retained_exon 30939-31692 (orient:+) max_ev_support = 2 scaffold_2 + retained_exons 30939-31080,31533-31692 asmbl_24060,asmbl_24062,asmbl_24063,asmbl_24064,asmbl_24065 scaffold_2 + intron_skips_exon 30795-32149 asmbl_24061 // Retained and Spliced Intron # retained_intron 166805-166882 (orient:+) max_ev_support = 1 # spliced_intron 166805-166882 (orient:+) max_ev_support = 2 scaffold_2 + intron 166805-166882 asmbl_24079,asmbl_24080,asmbl_24082 scaffold_2 + retained_intron 166805-166882 asmbl_24081 // Exon Skipping and Retention # skipped_exon 801491-802473 (orient:+) max_ev_support = 1 # retained_exon 801890-801955 (orient:+) max_ev_support = 3 scaffold_2 + retained_exons 801890-801955 asmbl_24107 scaffold_2 + intron_skips_exon 801491-802473 asmbl_24108 // Retained and Spliced Intron # retained_intron 861757-861958 (orient:+) max_ev_support = 1 # spliced_intron 861757-861958 (orient:+) max_ev_support = 2 scaffold_2 + intron 861757-861958 asmbl_24113,asmbl_24114,asmbl_24116 scaffold_2 + retained_intron 861757-861958 asmbl_24115 // Retained and Spliced Intron # retained_intron 884927-885046 (orient:+) max_ev_support = 1 # spliced_intron 884927-885046 (orient:+) max_ev_support = 1 scaffold_2 + intron 884927-885046 asmbl_24124,asmbl_24125,asmbl_24126 scaffold_2 + retained_intron 884927-885046 asmbl_24123 // Retained and Spliced Intron # retained_intron 885176-885305 (orient:+) max_ev_support = 1 # spliced_intron 885176-885305 (orient:+) max_ev_support = 1 scaffold_2 + intron 885176-885305 asmbl_24124,asmbl_24125,asmbl_24126 scaffold_2 + retained_intron 885176-885305 asmbl_24123 // Retained and Spliced Intron # retained_intron 885396-885480 (orient:+) max_ev_support = 1 # spliced_intron 885396-885480 (orient:+) max_ev_support = 1 scaffold_2 + intron 885396-885480 asmbl_24124,asmbl_24125,asmbl_24126 scaffold_2 + retained_intron 885396-885480 asmbl_24123 // Retained and Spliced Intron # retained_intron 883173-884738 (orient:+) max_ev_support = 1 # spliced_intron 883173-884738 (orient:+) max_ev_support = 1 scaffold_2 + intron 883173-884738 asmbl_24123,asmbl_24124 scaffold_2 + retained_intron 883173-884738 asmbl_24125 // Retained and Spliced Intron # retained_intron 883173-884775 (orient:+) max_ev_support = 1 # spliced_intron 883173-884775 (orient:+) max_ev_support = 1 scaffold_2 + intron 883173-884775 asmbl_24126 scaffold_2 + retained_intron 883173-884775 asmbl_24125 // Retained and Spliced Intron # retained_intron 888327-888347 (orient:+) max_ev_support = 3 # spliced_intron 888327-888347 (orient:+) max_ev_support = 1 scaffold_2 + intron 888327-888347 asmbl_24135 scaffold_2 + retained_intron 888327-888347 asmbl_24127,asmbl_24128,asmbl_24129,asmbl_24130,asmbl_24131,asmbl_24132,asmbl_24133,asmbl_24134 // Retained and Spliced Intron # retained_intron 888423-888576 (orient:+) max_ev_support = 3 # spliced_intron 888423-888576 (orient:+) max_ev_support = 1 scaffold_2 + intron 888423-888576 asmbl_24128,asmbl_24134 scaffold_2 + retained_intron 888423-888576 asmbl_24127,asmbl_24129,asmbl_24130,asmbl_24131 // Retained and Spliced Intron # retained_intron 888427-888576 (orient:+) max_ev_support = 2 # spliced_intron 888427-888576 (orient:+) max_ev_support = 1 scaffold_2 + intron 888427-888576 asmbl_24132,asmbl_24133,asmbl_24135 scaffold_2 + retained_intron 888427-888576 asmbl_24127,asmbl_24129,asmbl_24130,asmbl_24131 // Retained and Spliced Intron # retained_intron 888918-889046 (orient:+) max_ev_support = 3 # spliced_intron 888918-889046 (orient:+) max_ev_support = 1 scaffold_2 + intron 888918-889046 asmbl_24131,asmbl_24134 scaffold_2 + retained_intron 888918-889046 asmbl_24128,asmbl_24132,asmbl_24133,asmbl_24135 // Exon Skipping and Retention # skipped_exon 888658-889898 (orient:+) max_ev_support = 1 # retained_exon 888816-888917 (orient:+) max_ev_support = 1 scaffold_2 + retained_exons 888816-888917 asmbl_24130 scaffold_2 + intron_skips_exon 888658-889898 asmbl_24129 // Retained and Spliced Intron # retained_intron 888658-888815 (orient:+) max_ev_support = 3 # spliced_intron 888658-888815 (orient:+) max_ev_support = 1 scaffold_2 + intron 888658-888815 asmbl_24128,asmbl_24130,asmbl_24133,asmbl_24135 scaffold_2 + retained_intron 888658-888815 asmbl_24132 // Retained and Spliced Intron # retained_intron 888658-888818 (orient:+) max_ev_support = 3 # spliced_intron 888658-888818 (orient:+) max_ev_support = 1 scaffold_2 + intron 888658-888818 asmbl_24131,asmbl_24134 scaffold_2 + retained_intron 888658-888818 asmbl_24132 // Retained and Spliced Intron # retained_intron 891608-892306 (orient:+) max_ev_support = 6 # spliced_intron 891608-892306 (orient:+) max_ev_support = 2 scaffold_2 + intron 891608-892306 asmbl_24138,asmbl_24139,asmbl_24144,asmbl_24145 scaffold_2 + retained_intron 891608-892306 asmbl_24136,asmbl_24137 // Retained and Spliced Intron # retained_intron 892404-892512 (orient:+) max_ev_support = 2 # spliced_intron 892404-892512 (orient:+) max_ev_support = 2 scaffold_2 + intron 892404-892512 asmbl_24138,asmbl_24139,asmbl_24144,asmbl_24145 scaffold_2 + retained_intron 892404-892512 asmbl_24136,asmbl_24137,asmbl_24143 // Retained and Spliced Intron # retained_intron 892931-893048 (orient:+) max_ev_support = 3 # spliced_intron 892931-893048 (orient:+) max_ev_support = 1 scaffold_2 + intron 892931-893048 asmbl_24143,asmbl_24144 scaffold_2 + retained_intron 892931-893048 asmbl_24136,asmbl_24137,asmbl_24138,asmbl_24139,asmbl_24145 // Exon Skipping and Retention # skipped_exon 893116-894302 (orient:+) max_ev_support = 2 # retained_exon 893276-893361 (orient:+) max_ev_support = 3 scaffold_2 + retained_exons 893276-893361 asmbl_24138 scaffold_2 + intron_skips_exon 893116-894302 asmbl_24136,asmbl_24143,asmbl_24145 // Exon Skipping and Retention # skipped_exon 893116-894265 (orient:+) max_ev_support = 2 # retained_exon 893276-893361 (orient:+) max_ev_support = 3 scaffold_2 + retained_exons 893276-893361 asmbl_24138 scaffold_2 + intron_skips_exon 893116-894265 asmbl_24137,asmbl_24139,asmbl_24144 // Exon Skipping and Retention # skipped_exon 893112-894265 (orient:+) max_ev_support = 2 # retained_exon 893276-893361 (orient:+) max_ev_support = 3 scaffold_2 + retained_exons 893276-893361 asmbl_24138 scaffold_2 + intron_skips_exon 893112-894265 asmbl_24142 // Retained and Spliced Intron # retained_intron 897724-898862 (orient:+) max_ev_support = 3 # spliced_intron 897724-898862 (orient:+) max_ev_support = 3 scaffold_2 + intron 897724-898862 asmbl_24147,asmbl_24149,asmbl_24151 scaffold_2 + retained_intron 897724-898862 asmbl_24148,asmbl_24150 // Retained and Spliced Intron # retained_intron 898896-899000 (orient:+) max_ev_support = 3 # spliced_intron 898896-899000 (orient:+) max_ev_support = 3 scaffold_2 + intron 898896-899000 asmbl_24147,asmbl_24149,asmbl_24150 scaffold_2 + retained_intron 898896-899000 asmbl_24148,asmbl_24151 // Retained and Spliced Intron # retained_intron 899038-899115 (orient:+) max_ev_support = 3 # spliced_intron 899038-899115 (orient:+) max_ev_support = 3 scaffold_2 + intron 899038-899115 asmbl_24147,asmbl_24149,asmbl_24150 scaffold_2 + retained_intron 899038-899115 asmbl_24148,asmbl_24151 // Retained and Spliced Intron # retained_intron 899248-899414 (orient:+) max_ev_support = 2 # spliced_intron 899248-899414 (orient:+) max_ev_support = 3 scaffold_2 + intron 899248-899414 asmbl_24147,asmbl_24149,asmbl_24150 scaffold_2 + retained_intron 899248-899414 asmbl_24148,asmbl_24151 // Retained and Spliced Intron # retained_intron 899505-899602 (orient:+) max_ev_support = 1 # spliced_intron 899505-899602 (orient:+) max_ev_support = 2 scaffold_2 + intron 899505-899602 asmbl_24147,asmbl_24149,asmbl_24150 scaffold_2 + retained_intron 899505-899602 asmbl_24148,asmbl_24151 // Retained and Spliced Intron # retained_intron 899777-899876 (orient:+) max_ev_support = 2 # spliced_intron 899777-899876 (orient:+) max_ev_support = 2 scaffold_2 + intron 899777-899876 asmbl_24147,asmbl_24148 scaffold_2 + retained_intron 899777-899876 asmbl_24149,asmbl_24150 // Exon Skipping and Retention # skipped_exon 923893-926762 (orient:+) max_ev_support = 2 # retained_exon 924482-924504 (orient:+) max_ev_support = 2 scaffold_2 + retained_exons 924482-924504 asmbl_24153,asmbl_24154 scaffold_2 + intron_skips_exon 923893-926762 asmbl_24155,asmbl_24156 // Retained and Spliced Intron # retained_intron 943318-943692 (orient:+) max_ev_support = 2 # spliced_intron 943318-943692 (orient:+) max_ev_support = 2 scaffold_2 + intron 943318-943692 asmbl_24165 scaffold_2 + retained_intron 943318-943692 asmbl_24164 // Retained and Spliced Intron # retained_intron 950492-950626 (orient:+) max_ev_support = 1 # spliced_intron 950492-950626 (orient:+) max_ev_support = 1 scaffold_2 + intron 950492-950626 asmbl_24166 scaffold_2 + retained_intron 950492-950626 asmbl_24169 // Retained and Spliced Intron # retained_intron 950718-951959 (orient:+) max_ev_support = 1 # spliced_intron 950718-951959 (orient:+) max_ev_support = 1 scaffold_2 + intron 950718-951959 asmbl_24166 scaffold_2 + retained_intron 950718-951959 asmbl_24169 // Exon Skipping and Retention # skipped_exon 1301947-1302291 (orient:+) max_ev_support = 3 # retained_exon 1302081-1302135 (orient:+) max_ev_support = 3 scaffold_2 + retained_exons 1302081-1302135 asmbl_24177 scaffold_2 + intron_skips_exon 1301947-1302291 asmbl_24176 // Retained and Spliced Intron # retained_intron 1301947-1302080 (orient:+) max_ev_support = 3 # spliced_intron 1301947-1302080 (orient:+) max_ev_support = 3 scaffold_2 + intron 1301947-1302080 asmbl_24177 scaffold_2 + retained_intron 1301947-1302080 asmbl_24178 // Retained and Spliced Intron # retained_intron 1301947-1302291 (orient:+) max_ev_support = 3 # spliced_intron 1301947-1302291 (orient:+) max_ev_support = 3 scaffold_2 + intron 1301947-1302291 asmbl_24176 scaffold_2 + retained_intron 1301947-1302291 asmbl_24178 // Retained and Spliced Intron # retained_intron 1302136-1302291 (orient:+) max_ev_support = 3 # spliced_intron 1302136-1302291 (orient:+) max_ev_support = 3 scaffold_2 + intron 1302136-1302291 asmbl_24177 scaffold_2 + retained_intron 1302136-1302291 asmbl_24178 // Retained and Spliced Intron # retained_intron 1322435-1322697 (orient:+) max_ev_support = 2 # spliced_intron 1322435-1322697 (orient:+) max_ev_support = 1 scaffold_2 + intron 1322435-1322697 asmbl_24186 scaffold_2 + retained_intron 1322435-1322697 asmbl_24185,asmbl_24187 // Exon Skipping and Retention # skipped_exon 1595420-1595710 (orient:+) max_ev_support = 1 # retained_exon 1595546-1595634 (orient:+) max_ev_support = 2 scaffold_2 + retained_exons 1595546-1595634 asmbl_24211,asmbl_24213,asmbl_24214 scaffold_2 + intron_skips_exon 1595420-1595710 asmbl_24212 // Retained and Spliced Intron # retained_intron 1598188-1598295 (orient:+) max_ev_support = 1 # spliced_intron 1598188-1598295 (orient:+) max_ev_support = 2 scaffold_2 + intron 1598188-1598295 asmbl_24211,asmbl_24215 scaffold_2 + retained_intron 1598188-1598295 asmbl_24212,asmbl_24213,asmbl_24214 // Retained and Spliced Intron # retained_intron 2076731-2076946 (orient:+) max_ev_support = 3 # spliced_intron 2076731-2076946 (orient:+) max_ev_support = 1 scaffold_2 + intron 2076731-2076946 asmbl_24236 scaffold_2 + retained_intron 2076731-2076946 asmbl_24233,asmbl_24234,asmbl_24235 // Retained and Spliced Intron # retained_intron 2958099-2958664 (orient:+) max_ev_support = 4 # spliced_intron 2958099-2958664 (orient:+) max_ev_support = 1 scaffold_2 + intron 2958099-2958664 asmbl_24258 scaffold_2 + retained_intron 2958099-2958664 asmbl_24257 // Retained and Spliced Intron # retained_intron 2960170-2960333 (orient:+) max_ev_support = 2 # spliced_intron 2960170-2960333 (orient:+) max_ev_support = 2 scaffold_2 + intron 2960170-2960333 asmbl_24260 scaffold_2 + retained_intron 2960170-2960333 asmbl_24259 // Exon Skipping and Retention # skipped_exon 2986713-2987932 (orient:+) max_ev_support = 3 # retained_exon 2987706-2987819 (orient:+) max_ev_support = 3 scaffold_2 + retained_exons 2987706-2987819 asmbl_24264 scaffold_2 + intron_skips_exon 2986713-2987932 asmbl_24265 // Retained and Spliced Intron # retained_intron 3079174-3079230 (orient:+) max_ev_support = 2 # spliced_intron 3079174-3079230 (orient:+) max_ev_support = 1 scaffold_2 + intron 3079174-3079230 asmbl_24270 scaffold_2 + retained_intron 3079174-3079230 asmbl_24269 // Exon Skipping and Retention # skipped_exon 3632150-3633040 (orient:+) max_ev_support = 1 # retained_exon 3632499-3632648 (orient:+) max_ev_support = 1 scaffold_2 + retained_exons 3632499-3632648 asmbl_24291,asmbl_24294 scaffold_2 + intron_skips_exon 3632150-3633040 asmbl_24292 // Retained and Spliced Intron # retained_intron 3631902-3632007 (orient:+) max_ev_support = 1 # spliced_intron 3631902-3632007 (orient:+) max_ev_support = 1 scaffold_2 + intron 3631902-3632007 asmbl_24290,asmbl_24291,asmbl_24292,asmbl_24294 scaffold_2 + retained_intron 3631902-3632007 asmbl_24293 // Exon Skipping and Retention # skipped_exon 3898325-3899361 (orient:+) max_ev_support = 2 # retained_exon 3898797-3898886 (orient:+) max_ev_support = 2 scaffold_2 + retained_exons 3898797-3898886 asmbl_24316 scaffold_2 + intron_skips_exon 3898325-3899361 asmbl_24317,asmbl_24320 // Exon Skipping and Retention # skipped_exon 3898325-3899364 (orient:+) max_ev_support = 1 # retained_exon 3898797-3898886 (orient:+) max_ev_support = 2 scaffold_2 + retained_exons 3898797-3898886 asmbl_24316 scaffold_2 + intron_skips_exon 3898325-3899364 asmbl_24321 // Retained and Spliced Intron # retained_intron 3899965-3900066 (orient:+) max_ev_support = 1 # spliced_intron 3899965-3900066 (orient:+) max_ev_support = 2 scaffold_2 + intron 3899965-3900066 asmbl_24316,asmbl_24317,asmbl_24319 scaffold_2 + retained_intron 3899965-3900066 asmbl_24320,asmbl_24322 // Retained and Spliced Intron # retained_intron 4178724-4178813 (orient:+) max_ev_support = 1 # spliced_intron 4178724-4178813 (orient:+) max_ev_support = 2 scaffold_2 + intron 4178724-4178813 asmbl_24342 scaffold_2 + retained_intron 4178724-4178813 asmbl_24343 // Retained and Spliced Intron # retained_intron 4578060-4578717 (orient:+) max_ev_support = 3 # spliced_intron 4578060-4578717 (orient:+) max_ev_support = 2 scaffold_2 + intron 4578060-4578717 asmbl_24359,asmbl_24360,asmbl_24365 scaffold_2 + retained_intron 4578060-4578717 asmbl_24358 // Retained and Spliced Intron # retained_intron 4578467-4578717 (orient:+) max_ev_support = 3 # spliced_intron 4578467-4578717 (orient:+) max_ev_support = 1 scaffold_2 + intron 4578467-4578717 asmbl_24366 scaffold_2 + retained_intron 4578467-4578717 asmbl_24358 // Retained and Spliced Intron # retained_intron 4579215-4579828 (orient:+) max_ev_support = 2 # spliced_intron 4579215-4579828 (orient:+) max_ev_support = 2 scaffold_2 + intron 4579215-4579828 asmbl_24358,asmbl_24365,asmbl_24366 scaffold_2 + retained_intron 4579215-4579828 asmbl_24359,asmbl_24360 // Retained and Spliced Intron # retained_intron 4599512-4599633 (orient:+) max_ev_support = 1 # spliced_intron 4599512-4599633 (orient:+) max_ev_support = 2 scaffold_2 + intron 4599512-4599633 asmbl_24369 scaffold_2 + retained_intron 4599512-4599633 asmbl_24371 // Exon Skipping and Retention # skipped_exon 4624737-4626065 (orient:+) max_ev_support = 1 # retained_exon 4625159-4625170 (orient:+) max_ev_support = 1 scaffold_2 + retained_exons 4625159-4625170 asmbl_24373 scaffold_2 + intron_skips_exon 4624737-4626065 asmbl_24374 // Retained and Spliced Intron # retained_intron 4788146-4788491 (orient:+) max_ev_support = 2 # spliced_intron 4788146-4788491 (orient:+) max_ev_support = 2 scaffold_2 + intron 4788146-4788491 asmbl_24382 scaffold_2 + retained_intron 4788146-4788491 asmbl_24381,asmbl_24383 // Retained and Spliced Intron # retained_intron 5200440-5200571 (orient:+) max_ev_support = 2 # spliced_intron 5200440-5200571 (orient:+) max_ev_support = 1 scaffold_2 + intron 5200440-5200571 asmbl_24402 scaffold_2 + retained_intron 5200440-5200571 asmbl_24397,asmbl_24401 // Retained and Spliced Intron # retained_intron 5202056-5202363 (orient:+) max_ev_support = 2 # spliced_intron 5202056-5202363 (orient:+) max_ev_support = 3 scaffold_2 + intron 5202056-5202363 asmbl_24396,asmbl_24398,asmbl_24401,asmbl_24402 scaffold_2 + retained_intron 5202056-5202363 asmbl_24399 // Exon Skipping and Retention # skipped_exon 5200440-5201235 (orient:+) max_ev_support = 3 # retained_exon 5200572-5200622 (orient:+) max_ev_support = 1 scaffold_2 + retained_exons 5200572-5200622 asmbl_24402 scaffold_2 + intron_skips_exon 5200440-5201235 asmbl_24396 // Retained and Spliced Intron # retained_intron 5360023-5360118 (orient:+) max_ev_support = 2 # spliced_intron 5360023-5360118 (orient:+) max_ev_support = 2 scaffold_2 + intron 5360023-5360118 asmbl_24415 scaffold_2 + retained_intron 5360023-5360118 asmbl_24414 // Retained and Spliced Intron # retained_intron 5440602-5440687 (orient:+) max_ev_support = 2 # spliced_intron 5440602-5440687 (orient:+) max_ev_support = 2 scaffold_2 + intron 5440602-5440687 asmbl_24419 scaffold_2 + retained_intron 5440602-5440687 asmbl_24420 // Retained and Spliced Intron # retained_intron 5440602-5440711 (orient:+) max_ev_support = 2 # spliced_intron 5440602-5440711 (orient:+) max_ev_support = 1 scaffold_2 + intron 5440602-5440711 asmbl_24423 scaffold_2 + retained_intron 5440602-5440711 asmbl_24420 // Retained and Spliced Intron # retained_intron 5716839-5716996 (orient:+) max_ev_support = 3 # spliced_intron 5716839-5716996 (orient:+) max_ev_support = 2 scaffold_2 + intron 5716839-5716996 asmbl_24434,asmbl_24436 scaffold_2 + retained_intron 5716839-5716996 asmbl_24433 // Retained and Spliced Intron # retained_intron 6520144-6520227 (orient:+) max_ev_support = 2 # spliced_intron 6520144-6520227 (orient:+) max_ev_support = 3 scaffold_2 + intron 6520144-6520227 asmbl_24472,asmbl_24473,asmbl_24474,asmbl_24475,asmbl_24477 scaffold_2 + retained_intron 6520144-6520227 asmbl_24476 // Retained and Spliced Intron # retained_intron 6763081-6764405 (orient:+) max_ev_support = 2 # spliced_intron 6763081-6764405 (orient:+) max_ev_support = 3 scaffold_2 + intron 6763081-6764405 asmbl_24490,asmbl_24495,asmbl_24497 scaffold_2 + retained_intron 6763081-6764405 asmbl_24491,asmbl_24494,asmbl_24496,asmbl_24498 // Retained and Spliced Intron # retained_intron 6766622-6768034 (orient:+) max_ev_support = 2 # spliced_intron 6766622-6768034 (orient:+) max_ev_support = 3 scaffold_2 + intron 6766622-6768034 asmbl_24490,asmbl_24494 scaffold_2 + retained_intron 6766622-6768034 asmbl_24491,asmbl_24492,asmbl_24495 // Retained and Spliced Intron # retained_intron 6768217-6768941 (orient:+) max_ev_support = 2 # spliced_intron 6768217-6768941 (orient:+) max_ev_support = 3 scaffold_2 + intron 6768217-6768941 asmbl_24490,asmbl_24494 scaffold_2 + retained_intron 6768217-6768941 asmbl_24491,asmbl_24492,asmbl_24495 // Retained and Spliced Intron # retained_intron 6766206-6766429 (orient:+) max_ev_support = 2 # spliced_intron 6766206-6766429 (orient:+) max_ev_support = 3 scaffold_2 + intron 6766206-6766429 asmbl_24490,asmbl_24491,asmbl_24494,asmbl_24495 scaffold_2 + retained_intron 6766206-6766429 asmbl_24492 // Retained and Spliced Intron # retained_intron 6765125-6765361 (orient:+) max_ev_support = 2 # spliced_intron 6765125-6765361 (orient:+) max_ev_support = 3 scaffold_2 + intron 6765125-6765361 asmbl_24490,asmbl_24491,asmbl_24494,asmbl_24495 scaffold_2 + retained_intron 6765125-6765361 asmbl_24496,asmbl_24497,asmbl_24498 // Retained and Spliced Intron # retained_intron 6765473-6765659 (orient:+) max_ev_support = 2 # spliced_intron 6765473-6765659 (orient:+) max_ev_support = 3 scaffold_2 + intron 6765473-6765659 asmbl_24490,asmbl_24491,asmbl_24494,asmbl_24495 scaffold_2 + retained_intron 6765473-6765659 asmbl_24496,asmbl_24497,asmbl_24498 // Exon Skipping and Retention # skipped_exon 6900364-6901550 (orient:+) max_ev_support = 2 # retained_exon 6900682-6900759 (orient:+) max_ev_support = 2 scaffold_2 + retained_exons 6900682-6900759 asmbl_24510,asmbl_24511,asmbl_24513,asmbl_24514,asmbl_24516 scaffold_2 + intron_skips_exon 6900364-6901550 asmbl_24508,asmbl_24512,asmbl_24515 // Exon Skipping and Retention # skipped_exon 6899167-6900291 (orient:+) max_ev_support = 2 # retained_exon 6899410-6899421 (orient:+) max_ev_support = 1 scaffold_2 + retained_exons 6899410-6899421 asmbl_24511,asmbl_24512 scaffold_2 + intron_skips_exon 6899167-6900291 asmbl_24510,asmbl_24513,asmbl_24514,asmbl_24515,asmbl_24516 // Exon Skipping and Retention # skipped_exon 7042421-7042836 (orient:+) max_ev_support = 2 # retained_exon 7042599-7042724 (orient:+) max_ev_support = 2 scaffold_2 + retained_exons 7042599-7042724 asmbl_24522,asmbl_24523,asmbl_24524 scaffold_2 + intron_skips_exon 7042421-7042836 asmbl_24520,asmbl_24521 // Retained and Spliced Intron # retained_intron 7134503-7134669 (orient:+) max_ev_support = 2 # spliced_intron 7134503-7134669 (orient:+) max_ev_support = 2 scaffold_2 + intron 7134503-7134669 asmbl_24530 scaffold_2 + retained_intron 7134503-7134669 asmbl_24531 // Retained and Spliced Intron # retained_intron 7220195-7220310 (orient:+) max_ev_support = 3 # spliced_intron 7220195-7220310 (orient:+) max_ev_support = 2 scaffold_2 + intron 7220195-7220310 asmbl_24544,asmbl_24550 scaffold_2 + retained_intron 7220195-7220310 asmbl_24539,asmbl_24540,asmbl_24549,asmbl_24551 // Retained and Spliced Intron # retained_intron 7218817-7218918 (orient:+) max_ev_support = 3 # spliced_intron 7218817-7218918 (orient:+) max_ev_support = 3 scaffold_2 + intron 7218817-7218918 asmbl_24539,asmbl_24544,asmbl_24549,asmbl_24550,asmbl_24551 scaffold_2 + retained_intron 7218817-7218918 asmbl_24540 // Retained and Spliced Intron # retained_intron 7214953-7215092 (orient:+) max_ev_support = 3 # spliced_intron 7214953-7215092 (orient:+) max_ev_support = 3 scaffold_2 + intron 7214953-7215092 asmbl_24543,asmbl_24548,asmbl_24550 scaffold_2 + retained_intron 7214953-7215092 asmbl_24542 // Exon Skipping and Retention # skipped_exon 7214724-7216790 (orient:+) max_ev_support = 3 # retained_exon 7214806-7215153 (orient:+) max_ev_support = 3 scaffold_2 + retained_exons 7214806-7214952,7215093-7215153 asmbl_24543,asmbl_24550 scaffold_2 + intron_skips_exon 7214724-7216790 asmbl_24541 // Retained and Spliced Intron # retained_intron 7240923-7241276 (orient:+) max_ev_support = 1 # spliced_intron 7240923-7241276 (orient:+) max_ev_support = 2 scaffold_2 + intron 7240923-7241276 asmbl_24552,asmbl_24554,asmbl_24555,asmbl_24556,asmbl_24557 scaffold_2 + retained_intron 7240923-7241276 asmbl_24553 // Retained and Spliced Intron # retained_intron 7240470-7240767 (orient:+) max_ev_support = 1 # spliced_intron 7240470-7240767 (orient:+) max_ev_support = 2 scaffold_2 + intron 7240470-7240767 asmbl_24552,asmbl_24553,asmbl_24555,asmbl_24556,asmbl_24557 scaffold_2 + retained_intron 7240470-7240767 asmbl_24554 // Retained and Spliced Intron # retained_intron 7241982-7242169 (orient:+) max_ev_support = 1 # spliced_intron 7241982-7242169 (orient:+) max_ev_support = 2 scaffold_2 + intron 7241982-7242169 asmbl_24552,asmbl_24554,asmbl_24557 scaffold_2 + retained_intron 7241982-7242169 asmbl_24555,asmbl_24556 // Retained and Spliced Intron # retained_intron 7242608-7242683 (orient:+) max_ev_support = 1 # spliced_intron 7242608-7242683 (orient:+) max_ev_support = 2 scaffold_2 + intron 7242608-7242683 asmbl_24552,asmbl_24554,asmbl_24556,asmbl_24557 scaffold_2 + retained_intron 7242608-7242683 asmbl_24555 // Retained and Spliced Intron # retained_intron 7241458-7241554 (orient:+) max_ev_support = 1 # spliced_intron 7241458-7241554 (orient:+) max_ev_support = 2 scaffold_2 + intron 7241458-7241554 asmbl_24552,asmbl_24554,asmbl_24555,asmbl_24556 scaffold_2 + retained_intron 7241458-7241554 asmbl_24557 // Retained and Spliced Intron # retained_intron 7323594-7324003 (orient:+) max_ev_support = 3 # spliced_intron 7323594-7324003 (orient:+) max_ev_support = 1 scaffold_2 + intron 7323594-7324003 asmbl_24564 scaffold_2 + retained_intron 7323594-7324003 asmbl_24562 // Retained and Spliced Intron # retained_intron 7324282-7325889 (orient:+) max_ev_support = 5 # spliced_intron 7324282-7325889 (orient:+) max_ev_support = 1 scaffold_2 + intron 7324282-7325889 asmbl_24564 scaffold_2 + retained_intron 7324282-7325889 asmbl_24562 // Retained and Spliced Intron # retained_intron 7324810-7325889 (orient:+) max_ev_support = 3 # spliced_intron 7324810-7325889 (orient:+) max_ev_support = 3 scaffold_2 + intron 7324810-7325889 asmbl_24563 scaffold_2 + retained_intron 7324810-7325889 asmbl_24562 // Retained and Spliced Intron # retained_intron 7776424-7777128 (orient:+) max_ev_support = 2 # spliced_intron 7776424-7777128 (orient:+) max_ev_support = 2 scaffold_2 + intron 7776424-7777128 asmbl_24568 scaffold_2 + retained_intron 7776424-7777128 asmbl_24567 // Exon Skipping and Retention # skipped_exon 7781621-7782467 (orient:+) max_ev_support = 1 # retained_exon 7782119-7782194 (orient:+) max_ev_support = 3 scaffold_2 + retained_exons 7782119-7782194 asmbl_24570,asmbl_24571,asmbl_24572,asmbl_24573 scaffold_2 + intron_skips_exon 7781621-7782467 asmbl_24575 // Retained and Spliced Intron # retained_intron 7782690-7783100 (orient:+) max_ev_support = 4 # spliced_intron 7782690-7783100 (orient:+) max_ev_support = 2 scaffold_2 + intron 7782690-7783100 asmbl_24571,asmbl_24573,asmbl_24575 scaffold_2 + retained_intron 7782690-7783100 asmbl_24570 // Retained and Spliced Intron # retained_intron 7783180-7784364 (orient:+) max_ev_support = 5 # spliced_intron 7783180-7784364 (orient:+) max_ev_support = 2 scaffold_2 + intron 7783180-7784364 asmbl_24573,asmbl_24575 scaffold_2 + retained_intron 7783180-7784364 asmbl_24570,asmbl_24571 // Exon Skipping and Retention # skipped_exon 7781346-7782118 (orient:+) max_ev_support = 3 # retained_exon 7781545-7781620 (orient:+) max_ev_support = 1 scaffold_2 + retained_exons 7781545-7781620 asmbl_24575 scaffold_2 + intron_skips_exon 7781346-7782118 asmbl_24570,asmbl_24571,asmbl_24572,asmbl_24573,asmbl_24576 // Retained and Spliced Intron # retained_intron 7782195-7782467 (orient:+) max_ev_support = 1 # spliced_intron 7782195-7782467 (orient:+) max_ev_support = 3 scaffold_2 + intron 7782195-7782467 asmbl_24570,asmbl_24571,asmbl_24572,asmbl_24573 scaffold_2 + retained_intron 7782195-7782467 asmbl_24576 // Retained and Spliced Intron # retained_intron 7781346-7781544 (orient:+) max_ev_support = 1 # spliced_intron 7781346-7781544 (orient:+) max_ev_support = 1 scaffold_2 + intron 7781346-7781544 asmbl_24575 scaffold_2 + retained_intron 7781346-7781544 asmbl_24578 // Exon Skipping and Retention # skipped_exon 7880738-7881679 (orient:+) max_ev_support = 2 # retained_exon 7881107-7881454 (orient:+) max_ev_support = 3 scaffold_2 + retained_exons 7881107-7881203,7881367-7881454 asmbl_24581,asmbl_24586 scaffold_2 + intron_skips_exon 7880738-7881679 asmbl_24588 // Retained and Spliced Intron # retained_intron 7876589-7876880 (orient:+) max_ev_support = 2 # spliced_intron 7876589-7876880 (orient:+) max_ev_support = 3 scaffold_2 + intron 7876589-7876880 asmbl_24582,asmbl_24585,asmbl_24586,asmbl_24587,asmbl_24588 scaffold_2 + retained_intron 7876589-7876880 asmbl_24584 // Retained and Spliced Intron # retained_intron 7876359-7876445 (orient:+) max_ev_support = 2 # spliced_intron 7876359-7876445 (orient:+) max_ev_support = 3 scaffold_2 + intron 7876359-7876445 asmbl_24582,asmbl_24586,asmbl_24587,asmbl_24588 scaffold_2 + retained_intron 7876359-7876445 asmbl_24585 // Retained and Spliced Intron # retained_intron 7894830-7894910 (orient:+) max_ev_support = 3 # spliced_intron 7894830-7894910 (orient:+) max_ev_support = 3 scaffold_2 + intron 7894830-7894910 asmbl_24589,asmbl_24591,asmbl_24597 scaffold_2 + retained_intron 7894830-7894910 asmbl_24590,asmbl_24592,asmbl_24593,asmbl_24596 // Retained and Spliced Intron # retained_intron 7895023-7895182 (orient:+) max_ev_support = 2 # spliced_intron 7895023-7895182 (orient:+) max_ev_support = 3 scaffold_2 + intron 7895023-7895182 asmbl_24589,asmbl_24590,asmbl_24591,asmbl_24592,asmbl_24596,asmbl_24597 scaffold_2 + retained_intron 7895023-7895182 asmbl_24593 // Retained and Spliced Intron # retained_intron 7892477-7892601 (orient:+) max_ev_support = 2 # spliced_intron 7892477-7892601 (orient:+) max_ev_support = 2 scaffold_2 + intron 7892477-7892601 asmbl_24589,asmbl_24590,asmbl_24591,asmbl_24592,asmbl_24596,asmbl_24597 scaffold_2 + retained_intron 7892477-7892601 asmbl_24595 // Retained and Spliced Intron # retained_intron 7938372-7939699 (orient:+) max_ev_support = 4 # spliced_intron 7938372-7939699 (orient:+) max_ev_support = 3 scaffold_2 + intron 7938372-7939699 asmbl_24599,asmbl_24601,asmbl_24602,asmbl_24603 scaffold_2 + retained_intron 7938372-7939699 asmbl_24598 // Retained and Spliced Intron # retained_intron 7942373-7942526 (orient:+) max_ev_support = 2 # spliced_intron 7942373-7942526 (orient:+) max_ev_support = 3 scaffold_2 + intron 7942373-7942526 asmbl_24598,asmbl_24599,asmbl_24601,asmbl_24602 scaffold_2 + retained_intron 7942373-7942526 asmbl_24603 // Retained and Spliced Intron # retained_intron 7936735-7936885 (orient:+) max_ev_support = 2 # spliced_intron 7936735-7936885 (orient:+) max_ev_support = 3 scaffold_2 + intron 7936735-7936885 asmbl_24598,asmbl_24599,asmbl_24600,asmbl_24602,asmbl_24603 scaffold_2 + retained_intron 7936735-7936885 asmbl_24604 // Retained and Spliced Intron # retained_intron 7988750-7988928 (orient:+) max_ev_support = 3 # spliced_intron 7988750-7988928 (orient:+) max_ev_support = 3 scaffold_2 + intron 7988750-7988928 asmbl_24605 scaffold_2 + retained_intron 7988750-7988928 asmbl_24606 // Retained and Spliced Intron # retained_intron 8062385-8062907 (orient:+) max_ev_support = 2 # spliced_intron 8062385-8062907 (orient:+) max_ev_support = 2 scaffold_2 + intron 8062385-8062907 asmbl_24609 scaffold_2 + retained_intron 8062385-8062907 asmbl_24610 // Retained and Spliced Intron # retained_intron 8063944-8064058 (orient:+) max_ev_support = 2 # spliced_intron 8063944-8064058 (orient:+) max_ev_support = 2 scaffold_2 + intron 8063944-8064058 asmbl_24609 scaffold_2 + retained_intron 8063944-8064058 asmbl_24611 // Retained and Spliced Intron # retained_intron 8064152-8064334 (orient:+) max_ev_support = 2 # spliced_intron 8064152-8064334 (orient:+) max_ev_support = 2 scaffold_2 + intron 8064152-8064334 asmbl_24609 scaffold_2 + retained_intron 8064152-8064334 asmbl_24611 // Exon Skipping and Retention # skipped_exon 8191219-8193191 (orient:+) max_ev_support = 2 # retained_exon 8192753-8192867 (orient:+) max_ev_support = 2 scaffold_2 + retained_exons 8192753-8192867 asmbl_24616 scaffold_2 + intron_skips_exon 8191219-8193191 asmbl_24617 // Retained and Spliced Intron # retained_intron 8299359-8300642 (orient:+) max_ev_support = 1 # spliced_intron 8299359-8300642 (orient:+) max_ev_support = 2 scaffold_2 + intron 8299359-8300642 asmbl_24626,asmbl_24627,asmbl_24630 scaffold_2 + retained_intron 8299359-8300642 asmbl_24625,asmbl_24629 // Retained and Spliced Intron # retained_intron 8302850-8304172 (orient:+) max_ev_support = 3 # spliced_intron 8302850-8304172 (orient:+) max_ev_support = 2 scaffold_2 + intron 8302850-8304172 asmbl_24627,asmbl_24628 scaffold_2 + retained_intron 8302850-8304172 asmbl_24625 // Retained and Spliced Intron # retained_intron 8300696-8300832 (orient:+) max_ev_support = 1 # spliced_intron 8300696-8300832 (orient:+) max_ev_support = 2 scaffold_2 + intron 8300696-8300832 asmbl_24625,asmbl_24626,asmbl_24627,asmbl_24629 scaffold_2 + retained_intron 8300696-8300832 asmbl_24630 // Retained and Spliced Intron # retained_intron 8322079-8322426 (orient:+) max_ev_support = 2 # spliced_intron 8322079-8322426 (orient:+) max_ev_support = 2 scaffold_2 + intron 8322079-8322426 asmbl_24636,asmbl_24637 scaffold_2 + retained_intron 8322079-8322426 asmbl_24639 // Retained and Spliced Intron # retained_intron 8857714-8857736 (orient:+) max_ev_support = 1 # spliced_intron 8857714-8857736 (orient:+) max_ev_support = 1 scaffold_2 + intron 8857714-8857736 asmbl_24649 scaffold_2 + retained_intron 8857714-8857736 asmbl_24648 // Retained and Spliced Intron # retained_intron 8875113-8876256 (orient:+) max_ev_support = 2 # spliced_intron 8875113-8876256 (orient:+) max_ev_support = 1 scaffold_2 + intron 8875113-8876256 asmbl_24656,asmbl_24657 scaffold_2 + retained_intron 8875113-8876256 asmbl_24653,asmbl_24654,asmbl_24655 // Retained and Spliced Intron # retained_intron 8874291-8874368 (orient:+) max_ev_support = 2 # spliced_intron 8874291-8874368 (orient:+) max_ev_support = 1 scaffold_2 + intron 8874291-8874368 asmbl_24657 scaffold_2 + retained_intron 8874291-8874368 asmbl_24655,asmbl_24656 // Retained and Spliced Intron # retained_intron 8874291-8874378 (orient:+) max_ev_support = 2 # spliced_intron 8874291-8874378 (orient:+) max_ev_support = 2 scaffold_2 + intron 8874291-8874378 asmbl_24653,asmbl_24654 scaffold_2 + retained_intron 8874291-8874378 asmbl_24655,asmbl_24656 // Retained and Spliced Intron # retained_intron 9120966-9121051 (orient:+) max_ev_support = 2 # spliced_intron 9120966-9121051 (orient:+) max_ev_support = 3 scaffold_2 + intron 9120966-9121051 asmbl_24664,asmbl_24666 scaffold_2 + retained_intron 9120966-9121051 asmbl_24665 // Exon Skipping and Retention # skipped_exon 9159684-9161313 (orient:+) max_ev_support = 3 # retained_exon 9160014-9160085 (orient:+) max_ev_support = 1 scaffold_2 + retained_exons 9160014-9160085 asmbl_24672 scaffold_2 + intron_skips_exon 9159684-9161313 asmbl_24671,asmbl_24673 // Retained and Spliced Intron # retained_intron 9295733-9295827 (orient:+) max_ev_support = 1 # spliced_intron 9295733-9295827 (orient:+) max_ev_support = 2 scaffold_2 + intron 9295733-9295827 asmbl_24678 scaffold_2 + retained_intron 9295733-9295827 asmbl_24679 // Retained and Spliced Intron # retained_intron 9790090-9790374 (orient:+) max_ev_support = 2 # spliced_intron 9790090-9790374 (orient:+) max_ev_support = 2 scaffold_2 + intron 9790090-9790374 asmbl_24685,asmbl_24689,asmbl_24690 scaffold_2 + retained_intron 9790090-9790374 asmbl_24686 // Retained and Spliced Intron # retained_intron 9790539-9790880 (orient:+) max_ev_support = 2 # spliced_intron 9790539-9790880 (orient:+) max_ev_support = 2 scaffold_2 + intron 9790539-9790880 asmbl_24685,asmbl_24686,asmbl_24689,asmbl_24690 scaffold_2 + retained_intron 9790539-9790880 asmbl_24687 // Retained and Spliced Intron # retained_intron 9791002-9791168 (orient:+) max_ev_support = 2 # spliced_intron 9791002-9791168 (orient:+) max_ev_support = 2 scaffold_2 + intron 9791002-9791168 asmbl_24685,asmbl_24686,asmbl_24687,asmbl_24689,asmbl_24690 scaffold_2 + retained_intron 9791002-9791168 asmbl_24688 // Retained and Spliced Intron # retained_intron 9791343-9791807 (orient:+) max_ev_support = 2 # spliced_intron 9791343-9791807 (orient:+) max_ev_support = 2 scaffold_2 + intron 9791343-9791807 asmbl_24685,asmbl_24686,asmbl_24687,asmbl_24689,asmbl_24690 scaffold_2 + retained_intron 9791343-9791807 asmbl_24688 // Retained and Spliced Intron # retained_intron 9791919-9792309 (orient:+) max_ev_support = 2 # spliced_intron 9791919-9792309 (orient:+) max_ev_support = 2 scaffold_2 + intron 9791919-9792309 asmbl_24685,asmbl_24686,asmbl_24687,asmbl_24690 scaffold_2 + retained_intron 9791919-9792309 asmbl_24688,asmbl_24689 // Exon Skipping and Retention # skipped_exon 10135861-10137642 (orient:+) max_ev_support = 2 # retained_exon 10136911-10137082 (orient:+) max_ev_support = 2 scaffold_2 + retained_exons 10136911-10137082 asmbl_24697,asmbl_24698 scaffold_2 + intron_skips_exon 10135861-10137642 asmbl_24699 // Exon Skipping and Retention # skipped_exon 10137083-10139477 (orient:+) max_ev_support = 2 # retained_exon 10137643-10137814 (orient:+) max_ev_support = 2 scaffold_2 + retained_exons 10137643-10137814 asmbl_24698,asmbl_24699 scaffold_2 + intron_skips_exon 10137083-10139477 asmbl_24697 // Exon Skipping and Retention # skipped_exon 10393641-10394971 (orient:+) max_ev_support = 1 # retained_exon 10394585-10394676 (orient:+) max_ev_support = 1 scaffold_2 + retained_exons 10394585-10394676 asmbl_24702 scaffold_2 + intron_skips_exon 10393641-10394971 asmbl_24703 // Retained and Spliced Intron # retained_intron 10655085-10655168 (orient:+) max_ev_support = 1 # spliced_intron 10655085-10655168 (orient:+) max_ev_support = 2 scaffold_2 + intron 10655085-10655168 asmbl_24712,asmbl_24713 scaffold_2 + retained_intron 10655085-10655168 asmbl_24714 // Retained and Spliced Intron # retained_intron 10719654-10719730 (orient:+) max_ev_support = 2 # spliced_intron 10719654-10719730 (orient:+) max_ev_support = 3 scaffold_2 + intron 10719654-10719730 asmbl_24724 scaffold_2 + retained_intron 10719654-10719730 asmbl_24725,asmbl_24726 // Retained and Spliced Intron # retained_intron 10725827-10726142 (orient:+) max_ev_support = 1 # spliced_intron 10725827-10726142 (orient:+) max_ev_support = 2 scaffold_2 + intron 10725827-10726142 asmbl_24728 scaffold_2 + retained_intron 10725827-10726142 asmbl_24729,asmbl_24730 // Exon Skipping and Retention # skipped_exon 10878302-10880126 (orient:+) max_ev_support = 2 # retained_exon 10878680-10878697 (orient:+) max_ev_support = 2 scaffold_2 + retained_exons 10878680-10878697 asmbl_24736,asmbl_24741 scaffold_2 + intron_skips_exon 10878302-10880126 asmbl_24735 // Exon Skipping and Retention # skipped_exon 11256046-11256587 (orient:+) max_ev_support = 2 # retained_exon 11256406-11256473 (orient:+) max_ev_support = 2 scaffold_2 + retained_exons 11256406-11256473 asmbl_24745,asmbl_24748 scaffold_2 + intron_skips_exon 11256046-11256587 asmbl_24746,asmbl_24747 // Exon Skipping and Retention # skipped_exon 11258679-11259299 (orient:+) max_ev_support = 1 # retained_exon 11258793-11258873 (orient:+) max_ev_support = 2 scaffold_2 + retained_exons 11258793-11258873 asmbl_24745,asmbl_24746 scaffold_2 + intron_skips_exon 11258679-11259299 asmbl_24747,asmbl_24748 // Retained and Spliced Intron # retained_intron 11610034-11610204 (orient:+) max_ev_support = 3 # spliced_intron 11610034-11610204 (orient:+) max_ev_support = 1 scaffold_2 + intron 11610034-11610204 asmbl_24762,asmbl_24763,asmbl_24764 scaffold_2 + retained_intron 11610034-11610204 asmbl_24758,asmbl_24759 // Retained and Spliced Intron # retained_intron 11610034-11611257 (orient:+) max_ev_support = 3 # spliced_intron 11610034-11611257 (orient:+) max_ev_support = 1 scaffold_2 + intron 11610034-11611257 asmbl_24761,asmbl_24765 scaffold_2 + retained_intron 11610034-11611257 asmbl_24758,asmbl_24759 // Exon Skipping and Retention # skipped_exon 11603158-11605993 (orient:+) max_ev_support = 3 # retained_exon 11603471-11603482 (orient:+) max_ev_support = 2 scaffold_2 + retained_exons 11603471-11603482 asmbl_24759,asmbl_24763 scaffold_2 + intron_skips_exon 11603158-11605993 asmbl_24758,asmbl_24761,asmbl_24762,asmbl_24764,asmbl_24765 // Retained and Spliced Intron # retained_intron 11668002-11668168 (orient:+) max_ev_support = 1 # spliced_intron 11668002-11668168 (orient:+) max_ev_support = 2 scaffold_2 + intron 11668002-11668168 asmbl_24766 scaffold_2 + retained_intron 11668002-11668168 asmbl_24768 // Retained and Spliced Intron # retained_intron 13052907-13053021 (orient:+) max_ev_support = 2 # spliced_intron 13052907-13053021 (orient:+) max_ev_support = 2 scaffold_2 + intron 13052907-13053021 asmbl_24809 scaffold_2 + retained_intron 13052907-13053021 asmbl_24807,asmbl_24810 // Exon Skipping and Retention # skipped_exon 13051298-13053021 (orient:+) max_ev_support = 2 # retained_exon 13052791-13052906 (orient:+) max_ev_support = 2 scaffold_2 + retained_exons 13052791-13052906 asmbl_24809 scaffold_2 + intron_skips_exon 13051298-13053021 asmbl_24808 // Retained and Spliced Intron # retained_intron 13064806-13065021 (orient:+) max_ev_support = 3 # spliced_intron 13064806-13065021 (orient:+) max_ev_support = 2 scaffold_2 + intron 13064806-13065021 asmbl_24813,asmbl_24814 scaffold_2 + retained_intron 13064806-13065021 asmbl_24811,asmbl_24812 // Retained and Spliced Intron # retained_intron 13063387-13063523 (orient:+) max_ev_support = 2 # spliced_intron 13063387-13063523 (orient:+) max_ev_support = 3 scaffold_2 + intron 13063387-13063523 asmbl_24811,asmbl_24813,asmbl_24815 scaffold_2 + retained_intron 13063387-13063523 asmbl_24812,asmbl_24814 // Retained and Spliced Intron # retained_intron 13064373-13064567 (orient:+) max_ev_support = 1 # spliced_intron 13064373-13064567 (orient:+) max_ev_support = 3 scaffold_2 + intron 13064373-13064567 asmbl_24811,asmbl_24812,asmbl_24813,asmbl_24814 scaffold_2 + retained_intron 13064373-13064567 asmbl_24816 // Retained and Spliced Intron # retained_intron 13330421-13330492 (orient:+) max_ev_support = 2 # spliced_intron 13330421-13330492 (orient:+) max_ev_support = 2 scaffold_2 + intron 13330421-13330492 asmbl_24831,asmbl_24834 scaffold_2 + retained_intron 13330421-13330492 asmbl_24832,asmbl_24833 // Retained and Spliced Intron # retained_intron 13330650-13331324 (orient:+) max_ev_support = 2 # spliced_intron 13330650-13331324 (orient:+) max_ev_support = 2 scaffold_2 + intron 13330650-13331324 asmbl_24831,asmbl_24832 scaffold_2 + retained_intron 13330650-13331324 asmbl_24833,asmbl_24834 // Retained and Spliced Intron # retained_intron 13397328-13397546 (orient:+) max_ev_support = 3 # spliced_intron 13397328-13397546 (orient:+) max_ev_support = 2 scaffold_2 + intron 13397328-13397546 asmbl_24842,asmbl_24843,asmbl_24845 scaffold_2 + retained_intron 13397328-13397546 asmbl_24841,asmbl_24844,asmbl_24846 // Retained and Spliced Intron # retained_intron 13397950-13398180 (orient:+) max_ev_support = 3 # spliced_intron 13397950-13398180 (orient:+) max_ev_support = 2 scaffold_2 + intron 13397950-13398180 asmbl_24843,asmbl_24846 scaffold_2 + retained_intron 13397950-13398180 asmbl_24841,asmbl_24845 // Retained and Spliced Intron # retained_intron 13401811-13401905 (orient:+) max_ev_support = 3 # spliced_intron 13401811-13401905 (orient:+) max_ev_support = 2 scaffold_2 + intron 13401811-13401905 asmbl_24849 scaffold_2 + retained_intron 13401811-13401905 asmbl_24848 // Retained and Spliced Intron # retained_intron 13403024-13403216 (orient:+) max_ev_support = 3 # spliced_intron 13403024-13403216 (orient:+) max_ev_support = 2 scaffold_2 + intron 13403024-13403216 asmbl_24851 scaffold_2 + retained_intron 13403024-13403216 asmbl_24850 // Retained and Spliced Intron # retained_intron 13894429-13894871 (orient:+) max_ev_support = 2 # spliced_intron 13894429-13894871 (orient:+) max_ev_support = 3 scaffold_2 + intron 13894429-13894871 asmbl_24860 scaffold_2 + retained_intron 13894429-13894871 asmbl_24861 // Retained and Spliced Intron # retained_intron 14021377-14021829 (orient:+) max_ev_support = 3 # spliced_intron 14021377-14021829 (orient:+) max_ev_support = 3 scaffold_2 + intron 14021377-14021829 asmbl_24868,asmbl_24870 scaffold_2 + retained_intron 14021377-14021829 asmbl_24869 // Retained and Spliced Intron # retained_intron 14021578-14021829 (orient:+) max_ev_support = 1 # spliced_intron 14021578-14021829 (orient:+) max_ev_support = 1 scaffold_2 + intron 14021578-14021829 asmbl_24871 scaffold_2 + retained_intron 14021578-14021829 asmbl_24869 // Retained and Spliced Intron # retained_intron 14080181-14080211 (orient:+) max_ev_support = 1 # spliced_intron 14080181-14080211 (orient:+) max_ev_support = 1 scaffold_2 + intron 14080181-14080211 asmbl_24873,asmbl_24874 scaffold_2 + retained_intron 14080181-14080211 asmbl_24875 // Exon Skipping and Retention # skipped_exon 14276152-14276549 (orient:+) max_ev_support = 1 # retained_exon 14276258-14276384 (orient:+) max_ev_support = 2 scaffold_2 + retained_exons 14276258-14276384 asmbl_24897,asmbl_24903 scaffold_2 + intron_skips_exon 14276152-14276549 asmbl_24899 // Retained and Spliced Intron # retained_intron 14276152-14276257 (orient:+) max_ev_support = 1 # spliced_intron 14276152-14276257 (orient:+) max_ev_support = 2 scaffold_2 + intron 14276152-14276257 asmbl_24897,asmbl_24903 scaffold_2 + retained_intron 14276152-14276257 asmbl_24898,asmbl_24900,asmbl_24904,asmbl_24905 // Retained and Spliced Intron # retained_intron 14279595-14279835 (orient:+) max_ev_support = 1 # spliced_intron 14279595-14279835 (orient:+) max_ev_support = 1 scaffold_2 + intron 14279595-14279835 asmbl_24897,asmbl_24899,asmbl_24900,asmbl_24902 scaffold_2 + retained_intron 14279595-14279835 asmbl_24898,asmbl_24901 // Exon Skipping and Retention # skipped_exon 14271302-14274032 (orient:+) max_ev_support = 2 # retained_exon 14273093-14273221 (orient:+) max_ev_support = 1 scaffold_2 + retained_exons 14273093-14273221 asmbl_24899,asmbl_24903 scaffold_2 + intron_skips_exon 14271302-14274032 asmbl_24897,asmbl_24898,asmbl_24904 // Retained and Spliced Intron # retained_intron 14278868-14278991 (orient:+) max_ev_support = 1 # spliced_intron 14278868-14278991 (orient:+) max_ev_support = 1 scaffold_2 + intron 14278868-14278991 asmbl_24905 scaffold_2 + retained_intron 14278868-14278991 asmbl_24904,asmbl_24906 // Retained and Spliced Intron # retained_intron 14277290-14277855 (orient:+) max_ev_support = 1 # spliced_intron 14277290-14277855 (orient:+) max_ev_support = 1 scaffold_2 + intron 14277290-14277855 asmbl_24897,asmbl_24898,asmbl_24899,asmbl_24900,asmbl_24901,asmbl_24904,asmbl_24905 scaffold_2 + retained_intron 14277290-14277855 asmbl_24906 // Retained and Spliced Intron # retained_intron 14361444-14361522 (orient:+) max_ev_support = 2 # spliced_intron 14361444-14361522 (orient:+) max_ev_support = 2 scaffold_2 + intron 14361444-14361522 asmbl_24920,asmbl_24923 scaffold_2 + retained_intron 14361444-14361522 asmbl_24921 // Retained and Spliced Intron # retained_intron 14360465-14360586 (orient:+) max_ev_support = 1 # spliced_intron 14360465-14360586 (orient:+) max_ev_support = 2 scaffold_2 + intron 14360465-14360586 asmbl_24920,asmbl_24921 scaffold_2 + retained_intron 14360465-14360586 asmbl_24923 // Exon Skipping and Retention # skipped_exon 14391396-14392464 (orient:+) max_ev_support = 2 # retained_exon 14391844-14391978 (orient:+) max_ev_support = 3 scaffold_2 + retained_exons 14391844-14391978 asmbl_24927,asmbl_24929 scaffold_2 + intron_skips_exon 14391396-14392464 asmbl_24928 // Retained and Spliced Intron # retained_intron 14503777-14503884 (orient:+) max_ev_support = 1 # spliced_intron 14503777-14503884 (orient:+) max_ev_support = 2 scaffold_2 + intron 14503777-14503884 asmbl_24939 scaffold_2 + retained_intron 14503777-14503884 asmbl_24940 // Retained and Spliced Intron # retained_intron 14562874-14562960 (orient:+) max_ev_support = 3 # spliced_intron 14562874-14562960 (orient:+) max_ev_support = 2 scaffold_2 + intron 14562874-14562960 asmbl_24954,asmbl_24957,asmbl_24958,asmbl_24959,asmbl_24961 scaffold_2 + retained_intron 14562874-14562960 asmbl_24948 // Retained and Spliced Intron # retained_intron 14559023-14559185 (orient:+) max_ev_support = 1 # spliced_intron 14559023-14559185 (orient:+) max_ev_support = 2 scaffold_2 + intron 14559023-14559185 asmbl_24948,asmbl_24954,asmbl_24956,asmbl_24957,asmbl_24958,asmbl_24959,asmbl_24960,asmbl_24961 scaffold_2 + retained_intron 14559023-14559185 asmbl_24949 // Retained and Spliced Intron # retained_intron 14560511-14560637 (orient:+) max_ev_support = 2 # spliced_intron 14560511-14560637 (orient:+) max_ev_support = 1 scaffold_2 + intron 14560511-14560637 asmbl_24962 scaffold_2 + retained_intron 14560511-14560637 asmbl_24949 // Retained and Spliced Intron # retained_intron 14560511-14560687 (orient:+) max_ev_support = 2 # spliced_intron 14560511-14560687 (orient:+) max_ev_support = 2 scaffold_2 + intron 14560511-14560687 asmbl_24948,asmbl_24954,asmbl_24956,asmbl_24957,asmbl_24958,asmbl_24959,asmbl_24960,asmbl_24961 scaffold_2 + retained_intron 14560511-14560687 asmbl_24949 // Retained and Spliced Intron # retained_intron 14560804-14561388 (orient:+) max_ev_support = 2 # spliced_intron 14560804-14561388 (orient:+) max_ev_support = 2 scaffold_2 + intron 14560804-14561388 asmbl_24948,asmbl_24954,asmbl_24956,asmbl_24957,asmbl_24958,asmbl_24959,asmbl_24960,asmbl_24961 scaffold_2 + retained_intron 14560804-14561388 asmbl_24949,asmbl_24962 // Retained and Spliced Intron # retained_intron 14561522-14561619 (orient:+) max_ev_support = 2 # spliced_intron 14561522-14561619 (orient:+) max_ev_support = 2 scaffold_2 + intron 14561522-14561619 asmbl_24948,asmbl_24954,asmbl_24956,asmbl_24957,asmbl_24958,asmbl_24959,asmbl_24960,asmbl_24961 scaffold_2 + retained_intron 14561522-14561619 asmbl_24949,asmbl_24962 // Exon Skipping and Retention # skipped_exon 14548735-14549730 (orient:+) max_ev_support = 2 # retained_exon 14548889-14549008 (orient:+) max_ev_support = 2 scaffold_2 + retained_exons 14548889-14549008 asmbl_24954,asmbl_24960 scaffold_2 + intron_skips_exon 14548735-14549730 asmbl_24956,asmbl_24957,asmbl_24958,asmbl_24959,asmbl_24961 // Retained and Spliced Intron # retained_intron 14561797-14561960 (orient:+) max_ev_support = 1 # spliced_intron 14561797-14561960 (orient:+) max_ev_support = 2 scaffold_2 + intron 14561797-14561960 asmbl_24948,asmbl_24954,asmbl_24956,asmbl_24957,asmbl_24959,asmbl_24960,asmbl_24961 scaffold_2 + retained_intron 14561797-14561960 asmbl_24958 // Retained and Spliced Intron # retained_intron 14557091-14557286 (orient:+) max_ev_support = 1 # spliced_intron 14557091-14557286 (orient:+) max_ev_support = 2 scaffold_2 + intron 14557091-14557286 asmbl_24948,asmbl_24949,asmbl_24954,asmbl_24956,asmbl_24957,asmbl_24958,asmbl_24960,asmbl_24961 scaffold_2 + retained_intron 14557091-14557286 asmbl_24959 // Retained and Spliced Intron # retained_intron 14556531-14556641 (orient:+) max_ev_support = 1 # spliced_intron 14556531-14556641 (orient:+) max_ev_support = 2 scaffold_2 + intron 14556531-14556641 asmbl_24948,asmbl_24949,asmbl_24954,asmbl_24956,asmbl_24957,asmbl_24958,asmbl_24959,asmbl_24960 scaffold_2 + retained_intron 14556531-14556641 asmbl_24961 // Retained and Spliced Intron # retained_intron 14560203-14560372 (orient:+) max_ev_support = 1 # spliced_intron 14560203-14560372 (orient:+) max_ev_support = 2 scaffold_2 + intron 14560203-14560372 asmbl_24948,asmbl_24949,asmbl_24954,asmbl_24956,asmbl_24957,asmbl_24958,asmbl_24959,asmbl_24960,asmbl_24961 scaffold_2 + retained_intron 14560203-14560372 asmbl_24962 // Retained and Spliced Intron # retained_intron 14623015-14623109 (orient:+) max_ev_support = 1 # spliced_intron 14623015-14623109 (orient:+) max_ev_support = 2 scaffold_2 + intron 14623015-14623109 asmbl_24963 scaffold_2 + retained_intron 14623015-14623109 asmbl_24964 // Retained and Spliced Intron # retained_intron 14623203-14623311 (orient:+) max_ev_support = 1 # spliced_intron 14623203-14623311 (orient:+) max_ev_support = 2 scaffold_2 + intron 14623203-14623311 asmbl_24963 scaffold_2 + retained_intron 14623203-14623311 asmbl_24964 // Exon Skipping and Retention # skipped_exon 14734113-14735586 (orient:+) max_ev_support = 2 # retained_exon 14734586-14734648 (orient:+) max_ev_support = 2 scaffold_2 + retained_exons 14734586-14734648 asmbl_24973,asmbl_24980 scaffold_2 + intron_skips_exon 14734113-14735586 asmbl_24974,asmbl_24981 // Exon Skipping and Retention # skipped_exon 14738582-14741472 (orient:+) max_ev_support = 2 # retained_exon 14740443-14740493 (orient:+) max_ev_support = 2 scaffold_2 + retained_exons 14740443-14740493 asmbl_24973,asmbl_24981 scaffold_2 + intron_skips_exon 14738582-14741472 asmbl_24974,asmbl_24980 // Exon Skipping and Retention # skipped_exon 14751245-14752836 (orient:+) max_ev_support = 2 # retained_exon 14751910-14752164 (orient:+) max_ev_support = 2 scaffold_2 + retained_exons 14751910-14751987,14752083-14752164 asmbl_24982 scaffold_2 + intron_skips_exon 14751245-14752836 asmbl_24983 // Retained and Spliced Intron # retained_intron 15263572-15263652 (orient:+) max_ev_support = 1 # spliced_intron 15263572-15263652 (orient:+) max_ev_support = 2 scaffold_2 + intron 15263572-15263652 asmbl_24993 scaffold_2 + retained_intron 15263572-15263652 asmbl_24994 // Retained and Spliced Intron # retained_intron 15266613-15266717 (orient:+) max_ev_support = 2 # spliced_intron 15266613-15266717 (orient:+) max_ev_support = 1 scaffold_2 + intron 15266613-15266717 asmbl_25002,asmbl_25006 scaffold_2 + retained_intron 15266613-15266717 asmbl_24996,asmbl_24997,asmbl_24999,asmbl_25000,asmbl_25001,asmbl_25003,asmbl_25004 // Retained and Spliced Intron # retained_intron 15265851-15265947 (orient:+) max_ev_support = 2 # spliced_intron 15265851-15265947 (orient:+) max_ev_support = 2 scaffold_2 + intron 15265851-15265947 asmbl_24996,asmbl_24999,asmbl_25000,asmbl_25001,asmbl_25003,asmbl_25006 scaffold_2 + retained_intron 15265851-15265947 asmbl_24997,asmbl_25002,asmbl_25004,asmbl_25005 // Retained and Spliced Intron # retained_intron 15266137-15266197 (orient:+) max_ev_support = 2 # spliced_intron 15266137-15266197 (orient:+) max_ev_support = 2 scaffold_2 + intron 15266137-15266197 asmbl_24996,asmbl_24999,asmbl_25000,asmbl_25001,asmbl_25003 scaffold_2 + retained_intron 15266137-15266197 asmbl_24997,asmbl_25002,asmbl_25004,asmbl_25005,asmbl_25006 // Retained and Spliced Intron # retained_intron 15267438-15267758 (orient:+) max_ev_support = 2 # spliced_intron 15267438-15267758 (orient:+) max_ev_support = 1 scaffold_2 + intron 15267438-15267758 asmbl_24999,asmbl_25000 scaffold_2 + retained_intron 15267438-15267758 asmbl_24998 // Retained and Spliced Intron # retained_intron 15267111-15267282 (orient:+) max_ev_support = 1 # spliced_intron 15267111-15267282 (orient:+) max_ev_support = 2 scaffold_2 + intron 15267111-15267282 asmbl_24996,asmbl_24997,asmbl_25000,asmbl_25001,asmbl_25003,asmbl_25004,asmbl_25005,asmbl_25006 scaffold_2 + retained_intron 15267111-15267282 asmbl_24999,asmbl_25002 // Retained and Spliced Intron # retained_intron 15267793-15267920 (orient:+) max_ev_support = 1 # spliced_intron 15267793-15267920 (orient:+) max_ev_support = 1 scaffold_2 + intron 15267793-15267920 asmbl_25000 scaffold_2 + retained_intron 15267793-15267920 asmbl_24999 // Exon Skipping and Retention # skipped_exon 15267438-15267920 (orient:+) max_ev_support = 2 # retained_exon 15267759-15267792 (orient:+) max_ev_support = 1 scaffold_2 + retained_exons 15267759-15267792 asmbl_25000 scaffold_2 + intron_skips_exon 15267438-15267920 asmbl_24996,asmbl_24997,asmbl_25002,asmbl_25003,asmbl_25004,asmbl_25005 // Exon Skipping and Retention # skipped_exon 15267438-15267954 (orient:+) max_ev_support = 1 # retained_exon 15267759-15267792 (orient:+) max_ev_support = 1 scaffold_2 + retained_exons 15267759-15267792 asmbl_25000 scaffold_2 + intron_skips_exon 15267438-15267954 asmbl_25001,asmbl_25006 // Exon Skipping and Retention # skipped_exon 15266383-15266717 (orient:+) max_ev_support = 1 # retained_exon 15266470-15266612 (orient:+) max_ev_support = 1 scaffold_2 + retained_exons 15266470-15266612 asmbl_25002,asmbl_25006 scaffold_2 + intron_skips_exon 15266383-15266717 asmbl_25005 // Retained and Spliced Intron # retained_intron 15266383-15266469 (orient:+) max_ev_support = 1 # spliced_intron 15266383-15266469 (orient:+) max_ev_support = 2 scaffold_2 + intron 15266383-15266469 asmbl_24996,asmbl_24997,asmbl_24999,asmbl_25000,asmbl_25001,asmbl_25002,asmbl_25006 scaffold_2 + retained_intron 15266383-15266469 asmbl_25003,asmbl_25004 // Retained and Spliced Intron # retained_intron 15266383-15266717 (orient:+) max_ev_support = 1 # spliced_intron 15266383-15266717 (orient:+) max_ev_support = 1 scaffold_2 + intron 15266383-15266717 asmbl_25005 scaffold_2 + retained_intron 15266383-15266717 asmbl_25003,asmbl_25004 // Retained and Spliced Intron # retained_intron 15274237-15274329 (orient:+) max_ev_support = 2 # spliced_intron 15274237-15274329 (orient:+) max_ev_support = 2 scaffold_2 + intron 15274237-15274329 asmbl_25010,asmbl_25011,asmbl_25013,asmbl_25017,asmbl_25018,asmbl_25020 scaffold_2 + retained_intron 15274237-15274329 asmbl_25009,asmbl_25012 // Retained and Spliced Intron # retained_intron 15274444-15274538 (orient:+) max_ev_support = 2 # spliced_intron 15274444-15274538 (orient:+) max_ev_support = 2 scaffold_2 + intron 15274444-15274538 asmbl_25010,asmbl_25011,asmbl_25012,asmbl_25017,asmbl_25018,asmbl_25020 scaffold_2 + retained_intron 15274444-15274538 asmbl_25009 // Retained and Spliced Intron # retained_intron 15274632-15274740 (orient:+) max_ev_support = 2 # spliced_intron 15274632-15274740 (orient:+) max_ev_support = 2 scaffold_2 + intron 15274632-15274740 asmbl_25010,asmbl_25011,asmbl_25017,asmbl_25018,asmbl_25020 scaffold_2 + retained_intron 15274632-15274740 asmbl_25009 // Retained and Spliced Intron # retained_intron 15270688-15270822 (orient:+) max_ev_support = 1 # spliced_intron 15270688-15270822 (orient:+) max_ev_support = 2 scaffold_2 + intron 15270688-15270822 asmbl_25010,asmbl_25017,asmbl_25018,asmbl_25020 scaffold_2 + retained_intron 15270688-15270822 asmbl_25011,asmbl_25019 // Retained and Spliced Intron # retained_intron 15271745-15272034 (orient:+) max_ev_support = 1 # spliced_intron 15271745-15272034 (orient:+) max_ev_support = 2 scaffold_2 + intron 15271745-15272034 asmbl_25010,asmbl_25011,asmbl_25015,asmbl_25016,asmbl_25017,asmbl_25018,asmbl_25019,asmbl_25020 scaffold_2 + retained_intron 15271745-15272034 asmbl_25014 // Retained and Spliced Intron # retained_intron 15272586-15272673 (orient:+) max_ev_support = 1 # spliced_intron 15272586-15272673 (orient:+) max_ev_support = 2 scaffold_2 + intron 15272586-15272673 asmbl_25010,asmbl_25011,asmbl_25016,asmbl_25017,asmbl_25018,asmbl_25019 scaffold_2 + retained_intron 15272586-15272673 asmbl_25014,asmbl_25015,asmbl_25020 // Retained and Spliced Intron # retained_intron 15272780-15272879 (orient:+) max_ev_support = 1 # spliced_intron 15272780-15272879 (orient:+) max_ev_support = 2 scaffold_2 + intron 15272780-15272879 asmbl_25010,asmbl_25011,asmbl_25016,asmbl_25017,asmbl_25018,asmbl_25019,asmbl_25020 scaffold_2 + retained_intron 15272780-15272879 asmbl_25014,asmbl_25015 // Retained and Spliced Intron # retained_intron 15271155-15271232 (orient:+) max_ev_support = 1 # spliced_intron 15271155-15271232 (orient:+) max_ev_support = 2 scaffold_2 + intron 15271155-15271232 asmbl_25010,asmbl_25011,asmbl_25016,asmbl_25017,asmbl_25018,asmbl_25019,asmbl_25020 scaffold_2 + retained_intron 15271155-15271232 asmbl_25015 // Retained and Spliced Intron # retained_intron 15271311-15271411 (orient:+) max_ev_support = 1 # spliced_intron 15271311-15271411 (orient:+) max_ev_support = 2 scaffold_2 + intron 15271311-15271411 asmbl_25010,asmbl_25011,asmbl_25016,asmbl_25017,asmbl_25018,asmbl_25019,asmbl_25020 scaffold_2 + retained_intron 15271311-15271411 asmbl_25015 // Retained and Spliced Intron # retained_intron 15271520-15271659 (orient:+) max_ev_support = 1 # spliced_intron 15271520-15271659 (orient:+) max_ev_support = 2 scaffold_2 + intron 15271520-15271659 asmbl_25010,asmbl_25011,asmbl_25016,asmbl_25018,asmbl_25019,asmbl_25020 scaffold_2 + retained_intron 15271520-15271659 asmbl_25015,asmbl_25017 // Retained and Spliced Intron # retained_intron 15273247-15273404 (orient:+) max_ev_support = 1 # spliced_intron 15273247-15273404 (orient:+) max_ev_support = 2 scaffold_2 + intron 15273247-15273404 asmbl_25010,asmbl_25011,asmbl_25017,asmbl_25020 scaffold_2 + retained_intron 15273247-15273404 asmbl_25018 // Retained and Spliced Intron # retained_intron 15270016-15270269 (orient:+) max_ev_support = 1 # spliced_intron 15270016-15270269 (orient:+) max_ev_support = 2 scaffold_2 + intron 15270016-15270269 asmbl_25010,asmbl_25011,asmbl_25017,asmbl_25018,asmbl_25020 scaffold_2 + retained_intron 15270016-15270269 asmbl_25019 // Retained and Spliced Intron # retained_intron 15270410-15270515 (orient:+) max_ev_support = 1 # spliced_intron 15270410-15270515 (orient:+) max_ev_support = 2 scaffold_2 + intron 15270410-15270515 asmbl_25010,asmbl_25011,asmbl_25017,asmbl_25018,asmbl_25020 scaffold_2 + retained_intron 15270410-15270515 asmbl_25019 // Retained and Spliced Intron # retained_intron 15272997-15273081 (orient:+) max_ev_support = 1 # spliced_intron 15272997-15273081 (orient:+) max_ev_support = 2 scaffold_2 + intron 15272997-15273081 asmbl_25010,asmbl_25011,asmbl_25017,asmbl_25018,asmbl_25020 scaffold_2 + retained_intron 15272997-15273081 asmbl_25019 // Retained and Spliced Intron # retained_intron 15333838-15333989 (orient:+) max_ev_support = 2 # spliced_intron 15333838-15333989 (orient:+) max_ev_support = 2 scaffold_2 + intron 15333838-15333989 asmbl_25031 scaffold_2 + retained_intron 15333838-15333989 asmbl_25030 // Retained and Spliced Intron # retained_intron 15333838-15334058 (orient:+) max_ev_support = 2 # spliced_intron 15333838-15334058 (orient:+) max_ev_support = 2 scaffold_2 + intron 15333838-15334058 asmbl_25029 scaffold_2 + retained_intron 15333838-15334058 asmbl_25030 // Retained and Spliced Intron # retained_intron 15455859-15455931 (orient:+) max_ev_support = 2 # spliced_intron 15455859-15455931 (orient:+) max_ev_support = 2 scaffold_2 + intron 15455859-15455931 asmbl_25037,asmbl_25039,asmbl_25042,asmbl_25043 scaffold_2 + retained_intron 15455859-15455931 asmbl_25038,asmbl_25040,asmbl_25041 // Retained and Spliced Intron # retained_intron 15453799-15453902 (orient:+) max_ev_support = 1 # spliced_intron 15453799-15453902 (orient:+) max_ev_support = 2 scaffold_2 + intron 15453799-15453902 asmbl_25037,asmbl_25038,asmbl_25039,asmbl_25040,asmbl_25042,asmbl_25043,asmbl_25044 scaffold_2 + retained_intron 15453799-15453902 asmbl_25041,asmbl_25045 // Retained and Spliced Intron # retained_intron 15451380-15451457 (orient:+) max_ev_support = 1 # spliced_intron 15451380-15451457 (orient:+) max_ev_support = 2 scaffold_2 + intron 15451380-15451457 asmbl_25037,asmbl_25038,asmbl_25039,asmbl_25040,asmbl_25041,asmbl_25042,asmbl_25044 scaffold_2 + retained_intron 15451380-15451457 asmbl_25043 // Retained and Spliced Intron # retained_intron 15451748-15451824 (orient:+) max_ev_support = 1 # spliced_intron 15451748-15451824 (orient:+) max_ev_support = 2 scaffold_2 + intron 15451748-15451824 asmbl_25037,asmbl_25038,asmbl_25039,asmbl_25040,asmbl_25041,asmbl_25042,asmbl_25043 scaffold_2 + retained_intron 15451748-15451824 asmbl_25044 // Retained and Spliced Intron # retained_intron 15455311-15455409 (orient:+) max_ev_support = 1 # spliced_intron 15455311-15455409 (orient:+) max_ev_support = 2 scaffold_2 + intron 15455311-15455409 asmbl_25037,asmbl_25038,asmbl_25039,asmbl_25040,asmbl_25041,asmbl_25042,asmbl_25043 scaffold_2 + retained_intron 15455311-15455409 asmbl_25044,asmbl_25045 // Exon Skipping and Retention # skipped_exon 15686520-15687128 (orient:+) max_ev_support = 2 # retained_exon 15686608-15686682 (orient:+) max_ev_support = 3 scaffold_2 + retained_exons 15686608-15686682 asmbl_25067,asmbl_25068 scaffold_2 + intron_skips_exon 15686520-15687128 asmbl_25070 // Retained and Spliced Intron # retained_intron 15686210-15686390 (orient:+) max_ev_support = 2 # spliced_intron 15686210-15686390 (orient:+) max_ev_support = 3 scaffold_2 + intron 15686210-15686390 asmbl_25067 scaffold_2 + retained_intron 15686210-15686390 asmbl_25069 // Retained and Spliced Intron # retained_intron 15686309-15686390 (orient:+) max_ev_support = 2 # spliced_intron 15686309-15686390 (orient:+) max_ev_support = 3 scaffold_2 + intron 15686309-15686390 asmbl_25068,asmbl_25070 scaffold_2 + retained_intron 15686309-15686390 asmbl_25069 // Retained and Spliced Intron # retained_intron 15700571-15700762 (orient:+) max_ev_support = 2 # spliced_intron 15700571-15700762 (orient:+) max_ev_support = 2 scaffold_2 + intron 15700571-15700762 asmbl_25072,asmbl_25073,asmbl_25074 scaffold_2 + retained_intron 15700571-15700762 asmbl_25071 // Retained and Spliced Intron # retained_intron 15894798-15894963 (orient:+) max_ev_support = 3 # spliced_intron 15894798-15894963 (orient:+) max_ev_support = 1 scaffold_2 + intron 15894798-15894963 asmbl_25084 scaffold_2 + retained_intron 15894798-15894963 asmbl_25083 // Retained and Spliced Intron # retained_intron 16280381-16280649 (orient:+) max_ev_support = 1 # spliced_intron 16280381-16280649 (orient:+) max_ev_support = 2 scaffold_2 + intron 16280381-16280649 asmbl_25105,asmbl_25107 scaffold_2 + retained_intron 16280381-16280649 asmbl_25106 // Retained and Spliced Intron # retained_intron 16288921-16289287 (orient:+) max_ev_support = 1 # spliced_intron 16288921-16289287 (orient:+) max_ev_support = 1 scaffold_2 + intron 16288921-16289287 asmbl_25108,asmbl_25109,asmbl_25114 scaffold_2 + retained_intron 16288921-16289287 asmbl_25111,asmbl_25112,asmbl_25113 // Retained and Spliced Intron # retained_intron 16286701-16286808 (orient:+) max_ev_support = 1 # spliced_intron 16286701-16286808 (orient:+) max_ev_support = 1 scaffold_2 + intron 16286701-16286808 asmbl_25108,asmbl_25109,asmbl_25111 scaffold_2 + retained_intron 16286701-16286808 asmbl_25112 // Retained and Spliced Intron # retained_intron 16288201-16288293 (orient:+) max_ev_support = 1 # spliced_intron 16288201-16288293 (orient:+) max_ev_support = 1 scaffold_2 + intron 16288201-16288293 asmbl_25108,asmbl_25109,asmbl_25112,asmbl_25114 scaffold_2 + retained_intron 16288201-16288293 asmbl_25113 // Retained and Spliced Intron # retained_intron 16288201-16288309 (orient:+) max_ev_support = 1 # spliced_intron 16288201-16288309 (orient:+) max_ev_support = 1 scaffold_2 + intron 16288201-16288309 asmbl_25111 scaffold_2 + retained_intron 16288201-16288309 asmbl_25113 // Exon Skipping and Retention # skipped_exon 16357457-16357877 (orient:+) max_ev_support = 1 # retained_exon 16357572-16357813 (orient:+) max_ev_support = 2 scaffold_2 + retained_exons 16357572-16357635,16357729-16357813 asmbl_25121 scaffold_2 + intron_skips_exon 16357457-16357877 asmbl_25122 // Exon Skipping and Retention # skipped_exon 16357457-16357947 (orient:+) max_ev_support = 1 # retained_exon 16357572-16357813 (orient:+) max_ev_support = 2 scaffold_2 + retained_exons 16357572-16357635,16357729-16357813 asmbl_25121 scaffold_2 + intron_skips_exon 16357457-16357947 asmbl_25123 // Retained and Spliced Intron # retained_intron 16362712-16362791 (orient:+) max_ev_support = 2 # spliced_intron 16362712-16362791 (orient:+) max_ev_support = 3 scaffold_2 + intron 16362712-16362791 asmbl_25125 scaffold_2 + retained_intron 16362712-16362791 asmbl_25126 // Retained and Spliced Intron # retained_intron 16401404-16401522 (orient:+) max_ev_support = 1 # spliced_intron 16401404-16401522 (orient:+) max_ev_support = 3 scaffold_2 + intron 16401404-16401522 asmbl_25132,asmbl_25133 scaffold_2 + retained_intron 16401404-16401522 asmbl_25134 // Retained and Spliced Intron # retained_intron 16404516-16404596 (orient:+) max_ev_support = 3 # spliced_intron 16404516-16404596 (orient:+) max_ev_support = 2 scaffold_2 + intron 16404516-16404596 asmbl_25137,asmbl_25138 scaffold_2 + retained_intron 16404516-16404596 asmbl_25136 // Exon Skipping and Retention # skipped_exon 16403257-16403585 (orient:+) max_ev_support = 1 # retained_exon 16403416-16403503 (orient:+) max_ev_support = 2 scaffold_2 + retained_exons 16403416-16403503 asmbl_25137 scaffold_2 + intron_skips_exon 16403257-16403585 asmbl_25139 // Retained and Spliced Intron # retained_intron 16403504-16403585 (orient:+) max_ev_support = 1 # spliced_intron 16403504-16403585 (orient:+) max_ev_support = 2 scaffold_2 + intron 16403504-16403585 asmbl_25137 scaffold_2 + retained_intron 16403504-16403585 asmbl_25138 // Exon Skipping and Retention # skipped_exon 16860835-16861593 (orient:+) max_ev_support = 2 # retained_exon 16861119-16861232 (orient:+) max_ev_support = 2 scaffold_2 + retained_exons 16861119-16861232 asmbl_25146 scaffold_2 + intron_skips_exon 16860835-16861593 asmbl_25148 // Retained and Spliced Intron # retained_intron 16860835-16861118 (orient:+) max_ev_support = 1 # spliced_intron 16860835-16861118 (orient:+) max_ev_support = 2 scaffold_2 + intron 16860835-16861118 asmbl_25146,asmbl_25147 scaffold_2 + retained_intron 16860835-16861118 asmbl_25151 // Exon Skipping and Retention # skipped_exon 17613910-17614818 (orient:+) max_ev_support = 1 # retained_exon 17614275-17614349 (orient:+) max_ev_support = 4 scaffold_2 + retained_exons 17614275-17614349 asmbl_25185 scaffold_2 + intron_skips_exon 17613910-17614818 asmbl_25186 // Exon Skipping and Retention # skipped_exon 17613187-17615255 (orient:+) max_ev_support = 1 # retained_exon 17614275-17615047 (orient:+) max_ev_support = 4 scaffold_2 + retained_exons 17614275-17614349,17614819-17615047 asmbl_25185 scaffold_2 + intron_skips_exon 17613187-17615255 asmbl_25187 // Exon Skipping and Retention # skipped_exon 17613187-17614274 (orient:+) max_ev_support = 2 # retained_exon 17613833-17613909 (orient:+) max_ev_support = 2 scaffold_2 + retained_exons 17613833-17613909 asmbl_25186 scaffold_2 + intron_skips_exon 17613187-17614274 asmbl_25185 // Exon Skipping and Retention # skipped_exon 18709372-18710245 (orient:+) max_ev_support = 2 # retained_exon 18709526-18709606 (orient:+) max_ev_support = 2 scaffold_2 + retained_exons 18709526-18709606 asmbl_25232,asmbl_25233 scaffold_2 + intron_skips_exon 18709372-18710245 asmbl_25234 // Retained and Spliced Intron # retained_intron 18711549-18711905 (orient:+) max_ev_support = 2 # spliced_intron 18711549-18711905 (orient:+) max_ev_support = 2 scaffold_2 + intron 18711549-18711905 asmbl_25233,asmbl_25234 scaffold_2 + retained_intron 18711549-18711905 asmbl_25232,asmbl_25235 // Exon Skipping and Retention # skipped_exon 18719948-18720912 (orient:+) max_ev_support = 1 # retained_exon 18720575-18720635 (orient:+) max_ev_support = 1 scaffold_2 + retained_exons 18720575-18720635 asmbl_25238 scaffold_2 + intron_skips_exon 18719948-18720912 asmbl_25237 // Retained and Spliced Intron # retained_intron 18771819-18771850 (orient:+) max_ev_support = 1 # spliced_intron 18771819-18771850 (orient:+) max_ev_support = 1 scaffold_2 + intron 18771819-18771850 asmbl_25249 scaffold_2 + retained_intron 18771819-18771850 asmbl_25248 // Retained and Spliced Intron # retained_intron 18771893-18771973 (orient:+) max_ev_support = 1 # spliced_intron 18771893-18771973 (orient:+) max_ev_support = 1 scaffold_2 + intron 18771893-18771973 asmbl_25249 scaffold_2 + retained_intron 18771893-18771973 asmbl_25248 // Exon Skipping and Retention # skipped_exon 18950712-18952345 (orient:+) max_ev_support = 2 # retained_exon 18951171-18951207 (orient:+) max_ev_support = 2 scaffold_2 + retained_exons 18951171-18951207 asmbl_25252,asmbl_25254 scaffold_2 + intron_skips_exon 18950712-18952345 asmbl_25253 // Retained and Spliced Intron # retained_intron 18964556-18964833 (orient:+) max_ev_support = 2 # spliced_intron 18964556-18964833 (orient:+) max_ev_support = 2 scaffold_2 + intron 18964556-18964833 asmbl_25258 scaffold_2 + retained_intron 18964556-18964833 asmbl_25257 // Retained and Spliced Intron # retained_intron 19127889-19127928 (orient:+) max_ev_support = 1 # spliced_intron 19127889-19127928 (orient:+) max_ev_support = 1 scaffold_2 + intron 19127889-19127928 asmbl_25265 scaffold_2 + retained_intron 19127889-19127928 asmbl_25263 // Retained and Spliced Intron # retained_intron 19127909-19127928 (orient:+) max_ev_support = 1 # spliced_intron 19127909-19127928 (orient:+) max_ev_support = 1 scaffold_2 + intron 19127909-19127928 asmbl_25264 scaffold_2 + retained_intron 19127909-19127928 asmbl_25263 // Retained and Spliced Intron # retained_intron 19140192-19140304 (orient:+) max_ev_support = 3 # spliced_intron 19140192-19140304 (orient:+) max_ev_support = 2 scaffold_2 + intron 19140192-19140304 asmbl_25267 scaffold_2 + retained_intron 19140192-19140304 asmbl_25266 // Retained and Spliced Intron # retained_intron 19881129-19881471 (orient:+) max_ev_support = 3 # spliced_intron 19881129-19881471 (orient:+) max_ev_support = 3 scaffold_2 + intron 19881129-19881471 asmbl_25297 scaffold_2 + retained_intron 19881129-19881471 asmbl_25298 // Retained and Spliced Intron # retained_intron 20441919-20442053 (orient:+) max_ev_support = 2 # spliced_intron 20441919-20442053 (orient:+) max_ev_support = 3 scaffold_2 + intron 20441919-20442053 asmbl_25330,asmbl_25332 scaffold_2 + retained_intron 20441919-20442053 asmbl_25331 // Retained and Spliced Intron # retained_intron 240026-240046 (orient:-) max_ev_support = 1 # spliced_intron 240026-240046 (orient:-) max_ev_support = 1 scaffold_20 - intron 240026-240046 asmbl_25471 scaffold_20 - retained_intron 240026-240046 asmbl_25472 // Retained and Spliced Intron # retained_intron 253640-253910 (orient:-) max_ev_support = 1 # spliced_intron 253640-253910 (orient:-) max_ev_support = 1 scaffold_20 - intron 253640-253910 asmbl_25476 scaffold_20 - retained_intron 253640-253910 asmbl_25479 // Retained and Spliced Intron # retained_intron 253640-253915 (orient:-) max_ev_support = 1 # spliced_intron 253640-253915 (orient:-) max_ev_support = 1 scaffold_20 - intron 253640-253915 asmbl_25478 scaffold_20 - retained_intron 253640-253915 asmbl_25479 // Retained and Spliced Intron # retained_intron 253640-254205 (orient:-) max_ev_support = 1 # spliced_intron 253640-254205 (orient:-) max_ev_support = 1 scaffold_20 - intron 253640-254205 asmbl_25477 scaffold_20 - retained_intron 253640-254205 asmbl_25479 // Exon Skipping and Retention # skipped_exon 628851-631334 (orient:-) max_ev_support = 2 # retained_exon 631162-631242 (orient:-) max_ev_support = 2 scaffold_20 - retained_exons 631162-631242 asmbl_25501 scaffold_20 - intron_skips_exon 628851-631334 asmbl_25502 // Retained and Spliced Intron # retained_intron 631183-631334 (orient:-) max_ev_support = 1 # spliced_intron 631183-631334 (orient:-) max_ev_support = 2 scaffold_20 - intron 631183-631334 asmbl_25503 scaffold_20 - retained_intron 631183-631334 asmbl_25504 // Retained and Spliced Intron # retained_intron 631243-631334 (orient:-) max_ev_support = 1 # spliced_intron 631243-631334 (orient:-) max_ev_support = 2 scaffold_20 - intron 631243-631334 asmbl_25501 scaffold_20 - retained_intron 631243-631334 asmbl_25504 // Exon Skipping and Retention # skipped_exon 650710-652095 (orient:-) max_ev_support = 1 # retained_exon 651139-651339 (orient:-) max_ev_support = 2 scaffold_20 - retained_exons 651139-651339 asmbl_25506 scaffold_20 - intron_skips_exon 650710-652095 asmbl_25507 // Exon Skipping and Retention # skipped_exon 651340-653728 (orient:-) max_ev_support = 2 # retained_exon 652096-652296 (orient:-) max_ev_support = 1 scaffold_20 - retained_exons 652096-652296 asmbl_25507 scaffold_20 - intron_skips_exon 651340-653728 asmbl_25506 // Retained and Spliced Intron # retained_intron 1080419-1081286 (orient:-) max_ev_support = 5 # spliced_intron 1080419-1081286 (orient:-) max_ev_support = 2 scaffold_20 - intron 1080419-1081286 asmbl_25528 scaffold_20 - retained_intron 1080419-1081286 asmbl_25527 // Retained and Spliced Intron # retained_intron 1107445-1107556 (orient:-) max_ev_support = 1 # spliced_intron 1107445-1107556 (orient:-) max_ev_support = 1 scaffold_20 - intron 1107445-1107556 asmbl_25535 scaffold_20 - retained_intron 1107445-1107556 asmbl_25537 // Retained and Spliced Intron # retained_intron 1126444-1126470 (orient:-) max_ev_support = 1 # spliced_intron 1126444-1126470 (orient:-) max_ev_support = 1 scaffold_20 - intron 1126444-1126470 asmbl_25543 scaffold_20 - retained_intron 1126444-1126470 asmbl_25544 // Retained and Spliced Intron # retained_intron 1468562-1468884 (orient:-) max_ev_support = 3 # spliced_intron 1468562-1468884 (orient:-) max_ev_support = 2 scaffold_20 - intron 1468562-1468884 asmbl_25573,asmbl_25574 scaffold_20 - retained_intron 1468562-1468884 asmbl_25571,asmbl_25572 // Retained and Spliced Intron # retained_intron 1469067-1469176 (orient:-) max_ev_support = 3 # spliced_intron 1469067-1469176 (orient:-) max_ev_support = 2 scaffold_20 - intron 1469067-1469176 asmbl_25572,asmbl_25573,asmbl_25574 scaffold_20 - retained_intron 1469067-1469176 asmbl_25571 // Retained and Spliced Intron # retained_intron 1469616-1469860 (orient:-) max_ev_support = 2 # spliced_intron 1469616-1469860 (orient:-) max_ev_support = 1 scaffold_20 - intron 1469616-1469860 asmbl_25576,asmbl_25578 scaffold_20 - retained_intron 1469616-1469860 asmbl_25573,asmbl_25574,asmbl_25575,asmbl_25577 // Retained and Spliced Intron # retained_intron 1469616-1470058 (orient:-) max_ev_support = 2 # spliced_intron 1469616-1470058 (orient:-) max_ev_support = 2 scaffold_20 - intron 1469616-1470058 asmbl_25571,asmbl_25572 scaffold_20 - retained_intron 1469616-1470058 asmbl_25574,asmbl_25575 // Retained and Spliced Intron # retained_intron 1469911-1470058 (orient:-) max_ev_support = 2 # spliced_intron 1469911-1470058 (orient:-) max_ev_support = 1 scaffold_20 - intron 1469911-1470058 asmbl_25573,asmbl_25576,asmbl_25577 scaffold_20 - retained_intron 1469911-1470058 asmbl_25574,asmbl_25575,asmbl_25578 // Exon Skipping and Retention # skipped_exon 1469616-1470058 (orient:-) max_ev_support = 2 # retained_exon 1469861-1469910 (orient:-) max_ev_support = 1 scaffold_20 - retained_exons 1469861-1469910 asmbl_25576 scaffold_20 - intron_skips_exon 1469616-1470058 asmbl_25571,asmbl_25572 // Retained and Spliced Intron # retained_intron 1614927-1615776 (orient:-) max_ev_support = 7 # spliced_intron 1614927-1615776 (orient:-) max_ev_support = 1 scaffold_20 - intron 1614927-1615776 asmbl_25592 scaffold_20 - retained_intron 1614927-1615776 asmbl_25589,asmbl_25590,asmbl_25591 // Exon Skipping and Retention # skipped_exon 1615934-1618620 (orient:-) max_ev_support = 1 # retained_exon 1616257-1616378 (orient:-) max_ev_support = 1 scaffold_20 - retained_exons 1616257-1616378 asmbl_25589,asmbl_25592 scaffold_20 - intron_skips_exon 1615934-1618620 asmbl_25591 // Exon Skipping and Retention # skipped_exon 1616762-1619278 (orient:-) max_ev_support = 1 # retained_exon 1619050-1619133 (orient:-) max_ev_support = 1 scaffold_20 - retained_exons 1619050-1619133 asmbl_25589,asmbl_25592 scaffold_20 - intron_skips_exon 1616762-1619278 asmbl_25590 // Exon Skipping and Retention # skipped_exon 1616379-1619049 (orient:-) max_ev_support = 1 # retained_exon 1616678-1616761 (orient:-) max_ev_support = 1 scaffold_20 - retained_exons 1616678-1616761 asmbl_25590 scaffold_20 - intron_skips_exon 1616379-1619049 asmbl_25589,asmbl_25592 // Exon Skipping and Retention # skipped_exon 1616379-1619049 (orient:-) max_ev_support = 1 # retained_exon 1618621-1618742 (orient:-) max_ev_support = 1 scaffold_20 - retained_exons 1618621-1618742 asmbl_25591 scaffold_20 - intron_skips_exon 1616379-1619049 asmbl_25589,asmbl_25592 // Retained and Spliced Intron # retained_intron 1624100-1624144 (orient:-) max_ev_support = 1 # spliced_intron 1624100-1624144 (orient:-) max_ev_support = 1 scaffold_20 - intron 1624100-1624144 asmbl_25595 scaffold_20 - retained_intron 1624100-1624144 asmbl_25593 // Retained and Spliced Intron # retained_intron 2079205-2079301 (orient:-) max_ev_support = 1 # spliced_intron 2079205-2079301 (orient:-) max_ev_support = 4 scaffold_20 - intron 2079205-2079301 asmbl_25632 scaffold_20 - retained_intron 2079205-2079301 asmbl_25633 // Retained and Spliced Intron # retained_intron 2613659-2614166 (orient:-) max_ev_support = 1 # spliced_intron 2613659-2614166 (orient:-) max_ev_support = 2 scaffold_20 - intron 2613659-2614166 asmbl_25652 scaffold_20 - retained_intron 2613659-2614166 asmbl_25653 // Retained and Spliced Intron # retained_intron 2765358-2765473 (orient:-) max_ev_support = 2 # spliced_intron 2765358-2765473 (orient:-) max_ev_support = 1 scaffold_20 - intron 2765358-2765473 asmbl_25671,asmbl_25673 scaffold_20 - retained_intron 2765358-2765473 asmbl_25669 // Exon Skipping and Retention # skipped_exon 2763173-2765473 (orient:-) max_ev_support = 1 # retained_exon 2765259-2765357 (orient:-) max_ev_support = 1 scaffold_20 - retained_exons 2765259-2765357 asmbl_25671,asmbl_25673 scaffold_20 - intron_skips_exon 2763173-2765473 asmbl_25670,asmbl_25674 // Exon Skipping and Retention # skipped_exon 3251565-3253888 (orient:-) max_ev_support = 2 # retained_exon 3253020-3253159 (orient:-) max_ev_support = 2 scaffold_20 - retained_exons 3253020-3253159 asmbl_25689 scaffold_20 - intron_skips_exon 3251565-3253888 asmbl_25690 // Retained and Spliced Intron # retained_intron 3440981-3441081 (orient:-) max_ev_support = 3 # spliced_intron 3440981-3441081 (orient:-) max_ev_support = 1 scaffold_20 - intron 3440981-3441081 asmbl_25693 scaffold_20 - retained_intron 3440981-3441081 asmbl_25692 // Retained and Spliced Intron # retained_intron 4262257-4262277 (orient:-) max_ev_support = 1 # spliced_intron 4262257-4262277 (orient:-) max_ev_support = 1 scaffold_20 - intron 4262257-4262277 asmbl_25732 scaffold_20 - retained_intron 4262257-4262277 asmbl_25730 // Retained and Spliced Intron # retained_intron 4262299-4262354 (orient:-) max_ev_support = 1 # spliced_intron 4262299-4262354 (orient:-) max_ev_support = 1 scaffold_20 - intron 4262299-4262354 asmbl_25730 scaffold_20 - retained_intron 4262299-4262354 asmbl_25732 // Retained and Spliced Intron # retained_intron 4478711-4479160 (orient:-) max_ev_support = 1 # spliced_intron 4478711-4479160 (orient:-) max_ev_support = 2 scaffold_20 - intron 4478711-4479160 asmbl_25736,asmbl_25737,asmbl_25738,asmbl_25742 scaffold_20 - retained_intron 4478711-4479160 asmbl_25743 // Retained and Spliced Intron # retained_intron 4510126-4510257 (orient:-) max_ev_support = 1 # spliced_intron 4510126-4510257 (orient:-) max_ev_support = 2 scaffold_20 - intron 4510126-4510257 asmbl_25746 scaffold_20 - retained_intron 4510126-4510257 asmbl_25748 // Exon Skipping and Retention # skipped_exon 5549903-5550893 (orient:-) max_ev_support = 1 # retained_exon 5550444-5550486 (orient:-) max_ev_support = 2 scaffold_20 - retained_exons 5550444-5550486 asmbl_25767,asmbl_25768,asmbl_25770,asmbl_25771 scaffold_20 - intron_skips_exon 5549903-5550893 asmbl_25769,asmbl_25773 // Retained and Spliced Intron # retained_intron 5553307-5553473 (orient:-) max_ev_support = 4 # spliced_intron 5553307-5553473 (orient:-) max_ev_support = 2 scaffold_20 - intron 5553307-5553473 asmbl_25770,asmbl_25771,asmbl_25772,asmbl_25773 scaffold_20 - retained_intron 5553307-5553473 asmbl_25767,asmbl_25768,asmbl_25769 // Exon Skipping and Retention # skipped_exon 5549103-5550443 (orient:-) max_ev_support = 2 # retained_exon 5549860-5549902 (orient:-) max_ev_support = 1 scaffold_20 - retained_exons 5549860-5549902 asmbl_25769,asmbl_25773 scaffold_20 - intron_skips_exon 5549103-5550443 asmbl_25767,asmbl_25768,asmbl_25770,asmbl_25771 // Retained and Spliced Intron # retained_intron 5845427-5845613 (orient:-) max_ev_support = 3 # spliced_intron 5845427-5845613 (orient:-) max_ev_support = 2 scaffold_20 - intron 5845427-5845613 asmbl_25779 scaffold_20 - retained_intron 5845427-5845613 asmbl_25778 // Retained and Spliced Intron # retained_intron 5845709-5845968 (orient:-) max_ev_support = 4 # spliced_intron 5845709-5845968 (orient:-) max_ev_support = 2 scaffold_20 - intron 5845709-5845968 asmbl_25779 scaffold_20 - retained_intron 5845709-5845968 asmbl_25778 // Retained and Spliced Intron # retained_intron 5886547-5886628 (orient:-) max_ev_support = 2 # spliced_intron 5886547-5886628 (orient:-) max_ev_support = 2 scaffold_20 - intron 5886547-5886628 asmbl_25782 scaffold_20 - retained_intron 5886547-5886628 asmbl_25783 // Retained and Spliced Intron # retained_intron 5922620-5922744 (orient:-) max_ev_support = 3 # spliced_intron 5922620-5922744 (orient:-) max_ev_support = 2 scaffold_20 - intron 5922620-5922744 asmbl_25790,asmbl_25791 scaffold_20 - retained_intron 5922620-5922744 asmbl_25788,asmbl_25789 // Retained and Spliced Intron # retained_intron 5923668-5924088 (orient:-) max_ev_support = 4 # spliced_intron 5923668-5924088 (orient:-) max_ev_support = 2 scaffold_20 - intron 5923668-5924088 asmbl_25791 scaffold_20 - retained_intron 5923668-5924088 asmbl_25788,asmbl_25789 // Retained and Spliced Intron # retained_intron 5923668-5924973 (orient:-) max_ev_support = 4 # spliced_intron 5923668-5924973 (orient:-) max_ev_support = 2 scaffold_20 - intron 5923668-5924973 asmbl_25790,asmbl_25792,asmbl_25793 scaffold_20 - retained_intron 5923668-5924973 asmbl_25788,asmbl_25789 // Retained and Spliced Intron # retained_intron 5922950-5923078 (orient:-) max_ev_support = 1 # spliced_intron 5922950-5923078 (orient:-) max_ev_support = 2 scaffold_20 - intron 5922950-5923078 asmbl_25788,asmbl_25790,asmbl_25791,asmbl_25792 scaffold_20 - retained_intron 5922950-5923078 asmbl_25789 // Retained and Spliced Intron # retained_intron 5923146-5923230 (orient:-) max_ev_support = 1 # spliced_intron 5923146-5923230 (orient:-) max_ev_support = 2 scaffold_20 - intron 5923146-5923230 asmbl_25788,asmbl_25790,asmbl_25791 scaffold_20 - retained_intron 5923146-5923230 asmbl_25789,asmbl_25792,asmbl_25793 // Retained and Spliced Intron # retained_intron 5927643-5928282 (orient:-) max_ev_support = 4 # spliced_intron 5927643-5928282 (orient:-) max_ev_support = 2 scaffold_20 - intron 5927643-5928282 asmbl_25796 scaffold_20 - retained_intron 5927643-5928282 asmbl_25794,asmbl_25795 // Retained and Spliced Intron # retained_intron 5928434-5928707 (orient:-) max_ev_support = 4 # spliced_intron 5928434-5928707 (orient:-) max_ev_support = 2 scaffold_20 - intron 5928434-5928707 asmbl_25795,asmbl_25796 scaffold_20 - retained_intron 5928434-5928707 asmbl_25794 // Retained and Spliced Intron # retained_intron 5954529-5955148 (orient:-) max_ev_support = 2 # spliced_intron 5954529-5955148 (orient:-) max_ev_support = 2 scaffold_20 - intron 5954529-5955148 asmbl_25807 scaffold_20 - retained_intron 5954529-5955148 asmbl_25806 // Exon Skipping and Retention # skipped_exon 6132921-6134448 (orient:-) max_ev_support = 2 # retained_exon 6134055-6134081 (orient:-) max_ev_support = 2 scaffold_20 - retained_exons 6134055-6134081 asmbl_25818 scaffold_20 - intron_skips_exon 6132921-6134448 asmbl_25817 // Exon Skipping and Retention # skipped_exon 6468162-6468442 (orient:-) max_ev_support = 1 # retained_exon 6468274-6468350 (orient:-) max_ev_support = 2 scaffold_20 - retained_exons 6468274-6468350 asmbl_25838 scaffold_20 - intron_skips_exon 6468162-6468442 asmbl_25839 // Exon Skipping and Retention # skipped_exon 6655139-6656436 (orient:-) max_ev_support = 1 # retained_exon 6655900-6656024 (orient:-) max_ev_support = 2 scaffold_20 - retained_exons 6655900-6656024 asmbl_25843,asmbl_25844,asmbl_25845 scaffold_20 - intron_skips_exon 6655139-6656436 asmbl_25846 // Retained and Spliced Intron # retained_intron 7103318-7104894 (orient:-) max_ev_support = 5 # spliced_intron 7103318-7104894 (orient:-) max_ev_support = 2 scaffold_20 - intron 7103318-7104894 asmbl_25878 scaffold_20 - retained_intron 7103318-7104894 asmbl_25876 // Retained and Spliced Intron # retained_intron 7104772-7104894 (orient:-) max_ev_support = 3 # spliced_intron 7104772-7104894 (orient:-) max_ev_support = 2 scaffold_20 - intron 7104772-7104894 asmbl_25877 scaffold_20 - retained_intron 7104772-7104894 asmbl_25876 // Retained and Spliced Intron # retained_intron 7185087-7185227 (orient:-) max_ev_support = 2 # spliced_intron 7185087-7185227 (orient:-) max_ev_support = 1 scaffold_20 - intron 7185087-7185227 asmbl_25884 scaffold_20 - retained_intron 7185087-7185227 asmbl_25883 // Retained and Spliced Intron # retained_intron 7185087-7185348 (orient:-) max_ev_support = 2 # spliced_intron 7185087-7185348 (orient:-) max_ev_support = 1 scaffold_20 - intron 7185087-7185348 asmbl_25885,asmbl_25886 scaffold_20 - retained_intron 7185087-7185348 asmbl_25883 // Retained and Spliced Intron # retained_intron 7206140-7206288 (orient:-) max_ev_support = 2 # spliced_intron 7206140-7206288 (orient:-) max_ev_support = 2 scaffold_20 - intron 7206140-7206288 asmbl_25889 scaffold_20 - retained_intron 7206140-7206288 asmbl_25888 // Retained and Spliced Intron # retained_intron 7468719-7468963 (orient:-) max_ev_support = 1 # spliced_intron 7468719-7468963 (orient:-) max_ev_support = 2 scaffold_20 - intron 7468719-7468963 asmbl_25905,asmbl_25908,asmbl_25910 scaffold_20 - retained_intron 7468719-7468963 asmbl_25907,asmbl_25909 // Retained and Spliced Intron # retained_intron 7469036-7469153 (orient:-) max_ev_support = 1 # spliced_intron 7469036-7469153 (orient:-) max_ev_support = 2 scaffold_20 - intron 7469036-7469153 asmbl_25905,asmbl_25908,asmbl_25910 scaffold_20 - retained_intron 7469036-7469153 asmbl_25907,asmbl_25909,asmbl_25911 // Retained and Spliced Intron # retained_intron 7469286-7469829 (orient:-) max_ev_support = 1 # spliced_intron 7469286-7469829 (orient:-) max_ev_support = 2 scaffold_20 - intron 7469286-7469829 asmbl_25905,asmbl_25909,asmbl_25910 scaffold_20 - retained_intron 7469286-7469829 asmbl_25907,asmbl_25908,asmbl_25911 // Retained and Spliced Intron # retained_intron 7473965-7474216 (orient:-) max_ev_support = 1 # spliced_intron 7473965-7474216 (orient:-) max_ev_support = 2 scaffold_20 - intron 7473965-7474216 asmbl_25905,asmbl_25907,asmbl_25908,asmbl_25909,asmbl_25911,asmbl_25912 scaffold_20 - retained_intron 7473965-7474216 asmbl_25910 // Retained and Spliced Intron # retained_intron 7473157-7473239 (orient:-) max_ev_support = 1 # spliced_intron 7473157-7473239 (orient:-) max_ev_support = 2 scaffold_20 - intron 7473157-7473239 asmbl_25905,asmbl_25907,asmbl_25908,asmbl_25909,asmbl_25910,asmbl_25911,asmbl_25912 scaffold_20 - retained_intron 7473157-7473239 asmbl_25913 // Exon Skipping and Retention # skipped_exon 7801873-7802642 (orient:-) max_ev_support = 1 # retained_exon 7802015-7802281 (orient:-) max_ev_support = 2 scaffold_20 - retained_exons 7802015-7802084,7802198-7802281 asmbl_25919 scaffold_20 - intron_skips_exon 7801873-7802642 asmbl_25920 // Retained and Spliced Intron # retained_intron 7806737-7806925 (orient:-) max_ev_support = 2 # spliced_intron 7806737-7806925 (orient:-) max_ev_support = 2 scaffold_20 - intron 7806737-7806925 asmbl_25922,asmbl_25923 scaffold_20 - retained_intron 7806737-7806925 asmbl_25924 // Exon Skipping and Retention # skipped_exon 7861676-7863975 (orient:-) max_ev_support = 2 # retained_exon 7862451-7862542 (orient:-) max_ev_support = 2 scaffold_20 - retained_exons 7862451-7862542 asmbl_25931,asmbl_25937 scaffold_20 - intron_skips_exon 7861676-7863975 asmbl_25932,asmbl_25934 // Retained and Spliced Intron # retained_intron 7857888-7858063 (orient:-) max_ev_support = 1 # spliced_intron 7857888-7858063 (orient:-) max_ev_support = 2 scaffold_20 - intron 7857888-7858063 asmbl_25931,asmbl_25932,asmbl_25933 scaffold_20 - retained_intron 7857888-7858063 asmbl_25935,asmbl_25937 // Retained and Spliced Intron # retained_intron 7858103-7858245 (orient:-) max_ev_support = 1 # spliced_intron 7858103-7858245 (orient:-) max_ev_support = 2 scaffold_20 - intron 7858103-7858245 asmbl_25931,asmbl_25932,asmbl_25933 scaffold_20 - retained_intron 7858103-7858245 asmbl_25935,asmbl_25937 // Retained and Spliced Intron # retained_intron 7899285-7899371 (orient:-) max_ev_support = 3 # spliced_intron 7899285-7899371 (orient:-) max_ev_support = 3 scaffold_20 - intron 7899285-7899371 asmbl_25942 scaffold_20 - retained_intron 7899285-7899371 asmbl_25943 // Retained and Spliced Intron # retained_intron 7910387-7910642 (orient:-) max_ev_support = 3 # spliced_intron 7910387-7910642 (orient:-) max_ev_support = 2 scaffold_20 - intron 7910387-7910642 asmbl_25945 scaffold_20 - retained_intron 7910387-7910642 asmbl_25944 // Retained and Spliced Intron # retained_intron 8002938-8003022 (orient:-) max_ev_support = 3 # spliced_intron 8002938-8003022 (orient:-) max_ev_support = 1 scaffold_20 - intron 8002938-8003022 asmbl_25952 scaffold_20 - retained_intron 8002938-8003022 asmbl_25950 // Exon Skipping and Retention # skipped_exon 8018205-8018985 (orient:-) max_ev_support = 1 # retained_exon 8018476-8018855 (orient:-) max_ev_support = 2 scaffold_20 - retained_exons 8018476-8018557,8018791-8018855 asmbl_25954 scaffold_20 - intron_skips_exon 8018205-8018985 asmbl_25955 // Retained and Spliced Intron # retained_intron 8338716-8338886 (orient:-) max_ev_support = 2 # spliced_intron 8338716-8338886 (orient:-) max_ev_support = 2 scaffold_20 - intron 8338716-8338886 asmbl_25979,asmbl_25985,asmbl_25986 scaffold_20 - retained_intron 8338716-8338886 asmbl_25978,asmbl_25982,asmbl_25983,asmbl_25984 // Retained and Spliced Intron # retained_intron 8340131-8340449 (orient:-) max_ev_support = 1 # spliced_intron 8340131-8340449 (orient:-) max_ev_support = 2 scaffold_20 - intron 8340131-8340449 asmbl_25978,asmbl_25979,asmbl_25980,asmbl_25982,asmbl_25983,asmbl_25985,asmbl_25986 scaffold_20 - retained_intron 8340131-8340449 asmbl_25984 // Retained and Spliced Intron # retained_intron 8394496-8394623 (orient:-) max_ev_support = 2 # spliced_intron 8394496-8394623 (orient:-) max_ev_support = 2 scaffold_20 - intron 8394496-8394623 asmbl_25992 scaffold_20 - retained_intron 8394496-8394623 asmbl_25993 // Retained and Spliced Intron # retained_intron 8578419-8578764 (orient:-) max_ev_support = 1 # spliced_intron 8578419-8578764 (orient:-) max_ev_support = 2 scaffold_20 - intron 8578419-8578764 asmbl_25998 scaffold_20 - retained_intron 8578419-8578764 asmbl_26004 // Retained and Spliced Intron # retained_intron 8936755-8936837 (orient:-) max_ev_support = 1 # spliced_intron 8936755-8936837 (orient:-) max_ev_support = 1 scaffold_20 - intron 8936755-8936837 asmbl_26015 scaffold_20 - retained_intron 8936755-8936837 asmbl_26013,asmbl_26014 // Exon Skipping and Retention # skipped_exon 8936064-8936430 (orient:-) max_ev_support = 1 # retained_exon 8936221-8936268 (orient:-) max_ev_support = 1 scaffold_20 - retained_exons 8936221-8936268 asmbl_26014,asmbl_26015 scaffold_20 - intron_skips_exon 8936064-8936430 asmbl_26013 // Retained and Spliced Intron # retained_intron 9825448-9825623 (orient:-) max_ev_support = 2 # spliced_intron 9825448-9825623 (orient:-) max_ev_support = 2 scaffold_20 - intron 9825448-9825623 asmbl_26055,asmbl_26057,asmbl_26058 scaffold_20 - retained_intron 9825448-9825623 asmbl_26056 // Retained and Spliced Intron # retained_intron 9826506-9826707 (orient:-) max_ev_support = 1 # spliced_intron 9826506-9826707 (orient:-) max_ev_support = 2 scaffold_20 - intron 9826506-9826707 asmbl_26055,asmbl_26056,asmbl_26057 scaffold_20 - retained_intron 9826506-9826707 asmbl_26058 // Retained and Spliced Intron # retained_intron 10070223-10070662 (orient:-) max_ev_support = 2 # spliced_intron 10070223-10070662 (orient:-) max_ev_support = 2 scaffold_20 - intron 10070223-10070662 asmbl_26078,asmbl_26079 scaffold_20 - retained_intron 10070223-10070662 asmbl_26077 // Retained and Spliced Intron # retained_intron 10069728-10069888 (orient:-) max_ev_support = 2 # spliced_intron 10069728-10069888 (orient:-) max_ev_support = 2 scaffold_20 - intron 10069728-10069888 asmbl_26077,asmbl_26078 scaffold_20 - retained_intron 10069728-10069888 asmbl_26079 // Exon Skipping and Retention # skipped_exon 10113827-10114091 (orient:-) max_ev_support = 1 # retained_exon 10113960-10113999 (orient:-) max_ev_support = 3 scaffold_20 - retained_exons 10113960-10113999 asmbl_26081,asmbl_26082,asmbl_26083 scaffold_20 - intron_skips_exon 10113827-10114091 asmbl_26084 // Retained and Spliced Intron # retained_intron 10114940-10115029 (orient:-) max_ev_support = 3 # spliced_intron 10114940-10115029 (orient:-) max_ev_support = 1 scaffold_20 - intron 10114940-10115029 asmbl_26083,asmbl_26084 scaffold_20 - retained_intron 10114940-10115029 asmbl_26081 // Exon Skipping and Retention # skipped_exon 10249203-10249538 (orient:-) max_ev_support = 2 # retained_exon 10249290-10249425 (orient:-) max_ev_support = 3 scaffold_20 - retained_exons 10249290-10249425 asmbl_26095 scaffold_20 - intron_skips_exon 10249203-10249538 asmbl_26096 // Retained and Spliced Intron # retained_intron 10249203-10249289 (orient:-) max_ev_support = 1 # spliced_intron 10249203-10249289 (orient:-) max_ev_support = 3 scaffold_20 - intron 10249203-10249289 asmbl_26095 scaffold_20 - retained_intron 10249203-10249289 asmbl_26098 // Retained and Spliced Intron # retained_intron 10249203-10249538 (orient:-) max_ev_support = 1 # spliced_intron 10249203-10249538 (orient:-) max_ev_support = 2 scaffold_20 - intron 10249203-10249538 asmbl_26096 scaffold_20 - retained_intron 10249203-10249538 asmbl_26098 // Retained and Spliced Intron # retained_intron 10249426-10249538 (orient:-) max_ev_support = 1 # spliced_intron 10249426-10249538 (orient:-) max_ev_support = 3 scaffold_20 - intron 10249426-10249538 asmbl_26095 scaffold_20 - retained_intron 10249426-10249538 asmbl_26098 // Retained and Spliced Intron # retained_intron 10452937-10453051 (orient:-) max_ev_support = 2 # spliced_intron 10452937-10453051 (orient:-) max_ev_support = 3 scaffold_20 - intron 10452937-10453051 asmbl_26099 scaffold_20 - retained_intron 10452937-10453051 asmbl_26100 // Retained and Spliced Intron # retained_intron 10468860-10469189 (orient:-) max_ev_support = 2 # spliced_intron 10468860-10469189 (orient:-) max_ev_support = 2 scaffold_20 - intron 10468860-10469189 asmbl_26102,asmbl_26103 scaffold_20 - retained_intron 10468860-10469189 asmbl_26101 // Retained and Spliced Intron # retained_intron 11078627-11078744 (orient:-) max_ev_support = 1 # spliced_intron 11078627-11078744 (orient:-) max_ev_support = 2 scaffold_20 - intron 11078627-11078744 asmbl_26131 scaffold_20 - retained_intron 11078627-11078744 asmbl_26133,asmbl_26135 // Retained and Spliced Intron # retained_intron 11078653-11078744 (orient:-) max_ev_support = 1 # spliced_intron 11078653-11078744 (orient:-) max_ev_support = 2 scaffold_20 - intron 11078653-11078744 asmbl_26130,asmbl_26134 scaffold_20 - retained_intron 11078653-11078744 asmbl_26133,asmbl_26135 // Exon Skipping and Retention # skipped_exon 11085396-11086156 (orient:-) max_ev_support = 2 # retained_exon 11085819-11085964 (orient:-) max_ev_support = 3 scaffold_20 - retained_exons 11085819-11085964 asmbl_26136 scaffold_20 - intron_skips_exon 11085396-11086156 asmbl_26138 // Exon Skipping and Retention # skipped_exon 11085396-11086338 (orient:-) max_ev_support = 3 # retained_exon 11085819-11086249 (orient:-) max_ev_support = 3 scaffold_20 - retained_exons 11085819-11085964,11086157-11086249 asmbl_26136 scaffold_20 - intron_skips_exon 11085396-11086338 asmbl_26137 // Retained and Spliced Intron # retained_intron 11547068-11547149 (orient:-) max_ev_support = 2 # spliced_intron 11547068-11547149 (orient:-) max_ev_support = 2 scaffold_20 - intron 11547068-11547149 asmbl_26153 scaffold_20 - retained_intron 11547068-11547149 asmbl_26156 // Retained and Spliced Intron # retained_intron 11591608-11592897 (orient:-) max_ev_support = 4 # spliced_intron 11591608-11592897 (orient:-) max_ev_support = 1 scaffold_20 - intron 11591608-11592897 asmbl_26168,asmbl_26169 scaffold_20 - retained_intron 11591608-11592897 asmbl_26163 // Exon Skipping and Retention # skipped_exon 11612162-11613978 (orient:-) max_ev_support = 1 # retained_exon 11613242-11613370 (orient:-) max_ev_support = 1 scaffold_20 - retained_exons 11613242-11613370 asmbl_26168 scaffold_20 - intron_skips_exon 11612162-11613978 asmbl_26169 // Retained and Spliced Intron # retained_intron 11600743-11600915 (orient:-) max_ev_support = 1 # spliced_intron 11600743-11600915 (orient:-) max_ev_support = 1 scaffold_20 - intron 11600743-11600915 asmbl_26168 scaffold_20 - retained_intron 11600743-11600915 asmbl_26169 // Exon Skipping and Retention # skipped_exon 11672198-11673842 (orient:-) max_ev_support = 2 # retained_exon 11672272-11672377 (orient:-) max_ev_support = 2 scaffold_20 - retained_exons 11672272-11672377 asmbl_26171,asmbl_26176 scaffold_20 - intron_skips_exon 11672198-11673842 asmbl_26173 // Retained and Spliced Intron # retained_intron 11672168-11672271 (orient:-) max_ev_support = 2 # spliced_intron 11672168-11672271 (orient:-) max_ev_support = 1 scaffold_20 - intron 11672168-11672271 asmbl_26176 scaffold_20 - retained_intron 11672168-11672271 asmbl_26172 // Retained and Spliced Intron # retained_intron 11672198-11672271 (orient:-) max_ev_support = 2 # spliced_intron 11672198-11672271 (orient:-) max_ev_support = 2 scaffold_20 - intron 11672198-11672271 asmbl_26171,asmbl_26175 scaffold_20 - retained_intron 11672198-11672271 asmbl_26172 // Retained and Spliced Intron # retained_intron 11678784-11679288 (orient:-) max_ev_support = 2 # spliced_intron 11678784-11679288 (orient:-) max_ev_support = 2 scaffold_20 - intron 11678784-11679288 asmbl_26179 scaffold_20 - retained_intron 11678784-11679288 asmbl_26178,asmbl_26181 // Retained and Spliced Intron # retained_intron 11678784-11679395 (orient:-) max_ev_support = 2 # spliced_intron 11678784-11679395 (orient:-) max_ev_support = 2 scaffold_20 - intron 11678784-11679395 asmbl_26180,asmbl_26182 scaffold_20 - retained_intron 11678784-11679395 asmbl_26178,asmbl_26181 // Retained and Spliced Intron # retained_intron 11682548-11683305 (orient:-) max_ev_support = 1 # spliced_intron 11682548-11683305 (orient:-) max_ev_support = 2 scaffold_20 - intron 11682548-11683305 asmbl_26183 scaffold_20 - retained_intron 11682548-11683305 asmbl_26185 // Retained and Spliced Intron # retained_intron 11695106-11695323 (orient:-) max_ev_support = 1 # spliced_intron 11695106-11695323 (orient:-) max_ev_support = 1 scaffold_20 - intron 11695106-11695323 asmbl_26190 scaffold_20 - retained_intron 11695106-11695323 asmbl_26189 // Retained and Spliced Intron # retained_intron 11695106-11695430 (orient:-) max_ev_support = 1 # spliced_intron 11695106-11695430 (orient:-) max_ev_support = 2 scaffold_20 - intron 11695106-11695430 asmbl_26187 scaffold_20 - retained_intron 11695106-11695430 asmbl_26189 // Retained and Spliced Intron # retained_intron 11744401-11744588 (orient:-) max_ev_support = 3 # spliced_intron 11744401-11744588 (orient:-) max_ev_support = 2 scaffold_20 - intron 11744401-11744588 asmbl_26193 scaffold_20 - retained_intron 11744401-11744588 asmbl_26192 // Retained and Spliced Intron # retained_intron 11743342-11743680 (orient:-) max_ev_support = 1 # spliced_intron 11743342-11743680 (orient:-) max_ev_support = 2 scaffold_20 - intron 11743342-11743680 asmbl_26193 scaffold_20 - retained_intron 11743342-11743680 asmbl_26194 // Retained and Spliced Intron # retained_intron 11942421-11942684 (orient:-) max_ev_support = 1 # spliced_intron 11942421-11942684 (orient:-) max_ev_support = 2 scaffold_20 - intron 11942421-11942684 asmbl_26202,asmbl_26203 scaffold_20 - retained_intron 11942421-11942684 asmbl_26204 // Retained and Spliced Intron # retained_intron 11948483-11948577 (orient:-) max_ev_support = 2 # spliced_intron 11948483-11948577 (orient:-) max_ev_support = 1 scaffold_20 - intron 11948483-11948577 asmbl_26208 scaffold_20 - retained_intron 11948483-11948577 asmbl_26205,asmbl_26206 // Retained and Spliced Intron # retained_intron 11948483-11948717 (orient:-) max_ev_support = 2 # spliced_intron 11948483-11948717 (orient:-) max_ev_support = 1 scaffold_20 - intron 11948483-11948717 asmbl_26207,asmbl_26209 scaffold_20 - retained_intron 11948483-11948717 asmbl_26205 // Retained and Spliced Intron # retained_intron 11948625-11948717 (orient:-) max_ev_support = 2 # spliced_intron 11948625-11948717 (orient:-) max_ev_support = 1 scaffold_20 - intron 11948625-11948717 asmbl_26206,asmbl_26208 scaffold_20 - retained_intron 11948625-11948717 asmbl_26205 // Exon Skipping and Retention # skipped_exon 11948483-11948717 (orient:-) max_ev_support = 1 # retained_exon 11948578-11948624 (orient:-) max_ev_support = 1 scaffold_20 - retained_exons 11948578-11948624 asmbl_26208 scaffold_20 - intron_skips_exon 11948483-11948717 asmbl_26207,asmbl_26209 // Retained and Spliced Intron # retained_intron 11950865-11950950 (orient:-) max_ev_support = 1 # spliced_intron 11950865-11950950 (orient:-) max_ev_support = 1 scaffold_20 - intron 11950865-11950950 asmbl_26207,asmbl_26208 scaffold_20 - retained_intron 11950865-11950950 asmbl_26209 // Exon Skipping and Retention # skipped_exon 12074836-12076942 (orient:-) max_ev_support = 1 # retained_exon 12074890-12076778 (orient:-) max_ev_support = 2 scaffold_20 - retained_exons 12074890-12074997,12075219-12075362,12075813-12075925,12076084-12076151,12076238-12076305,12076661-12076778 asmbl_26214 scaffold_20 - retained_exons 12074890-12074997,12075219-12075362,12075813-12076305,12076661-12076778 asmbl_26216 scaffold_20 - retained_exons 12074890-12075362,12075813-12075925,12076084-12076151,12076238-12076305,12076661-12076778 asmbl_26217 scaffold_20 - retained_exons 12074890-12074997,12075219-12075362,12075813-12075925,12076084-12076305,12076661-12076778 asmbl_26218 scaffold_20 - intron_skips_exon 12074836-12076942 asmbl_26219 // Retained and Spliced Intron # retained_intron 12075926-12076083 (orient:-) max_ev_support = 1 # spliced_intron 12075926-12076083 (orient:-) max_ev_support = 2 scaffold_20 - intron 12075926-12076083 asmbl_26214,asmbl_26215,asmbl_26217,asmbl_26218 scaffold_20 - retained_intron 12075926-12076083 asmbl_26216 // Retained and Spliced Intron # retained_intron 12076152-12076237 (orient:-) max_ev_support = 1 # spliced_intron 12076152-12076237 (orient:-) max_ev_support = 2 scaffold_20 - intron 12076152-12076237 asmbl_26214,asmbl_26215,asmbl_26217 scaffold_20 - retained_intron 12076152-12076237 asmbl_26216,asmbl_26218 // Retained and Spliced Intron # retained_intron 12074998-12075218 (orient:-) max_ev_support = 1 # spliced_intron 12074998-12075218 (orient:-) max_ev_support = 2 scaffold_20 - intron 12074998-12075218 asmbl_26214,asmbl_26216,asmbl_26218 scaffold_20 - retained_intron 12074998-12075218 asmbl_26217 // Exon Skipping and Retention # skipped_exon 12095031-12095997 (orient:-) max_ev_support = 1 # retained_exon 12095382-12095665 (orient:-) max_ev_support = 2 scaffold_20 - retained_exons 12095382-12095665 asmbl_26221 scaffold_20 - intron_skips_exon 12095031-12095997 asmbl_26223 // Retained and Spliced Intron # retained_intron 12095031-12095381 (orient:-) max_ev_support = 2 # spliced_intron 12095031-12095381 (orient:-) max_ev_support = 2 scaffold_20 - intron 12095031-12095381 asmbl_26221 scaffold_20 - retained_intron 12095031-12095381 asmbl_26222 // Exon Skipping and Retention # skipped_exon 426291-428804 (orient:+) max_ev_support = 1 # retained_exon 428278-428414 (orient:+) max_ev_support = 1 scaffold_20 + retained_exons 428278-428414 asmbl_26351 scaffold_20 + intron_skips_exon 426291-428804 asmbl_26352 // Exon Skipping and Retention # skipped_exon 425819-428277 (orient:+) max_ev_support = 1 # retained_exon 426154-426290 (orient:+) max_ev_support = 1 scaffold_20 + retained_exons 426154-426290 asmbl_26352 scaffold_20 + intron_skips_exon 425819-428277 asmbl_26351 // Retained and Spliced Intron # retained_intron 1092927-1093085 (orient:+) max_ev_support = 1 # spliced_intron 1092927-1093085 (orient:+) max_ev_support = 1 scaffold_20 + intron 1092927-1093085 asmbl_26406 scaffold_20 + retained_intron 1092927-1093085 asmbl_26407 // Retained and Spliced Intron # retained_intron 1490221-1490256 (orient:+) max_ev_support = 1 # spliced_intron 1490221-1490256 (orient:+) max_ev_support = 1 scaffold_20 + intron 1490221-1490256 asmbl_26417,asmbl_26418 scaffold_20 + retained_intron 1490221-1490256 asmbl_26415,asmbl_26416,asmbl_26419 // Retained and Spliced Intron # retained_intron 1490355-1490426 (orient:+) max_ev_support = 6 # spliced_intron 1490355-1490426 (orient:+) max_ev_support = 1 scaffold_20 + intron 1490355-1490426 asmbl_26416,asmbl_26418 scaffold_20 + retained_intron 1490355-1490426 asmbl_26415 // Retained and Spliced Intron # retained_intron 1490365-1490400 (orient:+) max_ev_support = 6 # spliced_intron 1490365-1490400 (orient:+) max_ev_support = 1 scaffold_20 + intron 1490365-1490400 asmbl_26417,asmbl_26419 scaffold_20 + retained_intron 1490365-1490400 asmbl_26415 // Retained and Spliced Intron # retained_intron 1490437-1490472 (orient:+) max_ev_support = 6 # spliced_intron 1490437-1490472 (orient:+) max_ev_support = 1 scaffold_20 + intron 1490437-1490472 asmbl_26417,asmbl_26419 scaffold_20 + retained_intron 1490437-1490472 asmbl_26415,asmbl_26416,asmbl_26418 // Retained and Spliced Intron # retained_intron 1489870-1489939 (orient:+) max_ev_support = 1 # spliced_intron 1489870-1489939 (orient:+) max_ev_support = 1 scaffold_20 + intron 1489870-1489939 asmbl_26415,asmbl_26416,asmbl_26418,asmbl_26419 scaffold_20 + retained_intron 1489870-1489939 asmbl_26417 // Retained and Spliced Intron # retained_intron 1664651-1664742 (orient:+) max_ev_support = 3 # spliced_intron 1664651-1664742 (orient:+) max_ev_support = 1 scaffold_20 + intron 1664651-1664742 asmbl_26440 scaffold_20 + retained_intron 1664651-1664742 asmbl_26439 // Retained and Spliced Intron # retained_intron 1671485-1671524 (orient:+) max_ev_support = 2 # spliced_intron 1671485-1671524 (orient:+) max_ev_support = 1 scaffold_20 + intron 1671485-1671524 asmbl_26443 scaffold_20 + retained_intron 1671485-1671524 asmbl_26442 // Retained and Spliced Intron # retained_intron 1754144-1754228 (orient:+) max_ev_support = 2 # spliced_intron 1754144-1754228 (orient:+) max_ev_support = 1 scaffold_20 + intron 1754144-1754228 asmbl_26452 scaffold_20 + retained_intron 1754144-1754228 asmbl_26451 // Retained and Spliced Intron # retained_intron 1754144-1754287 (orient:+) max_ev_support = 2 # spliced_intron 1754144-1754287 (orient:+) max_ev_support = 3 scaffold_20 + intron 1754144-1754287 asmbl_26450 scaffold_20 + retained_intron 1754144-1754287 asmbl_26451 // Retained and Spliced Intron # retained_intron 2137292-2137342 (orient:+) max_ev_support = 3 # spliced_intron 2137292-2137342 (orient:+) max_ev_support = 1 scaffold_20 + intron 2137292-2137342 asmbl_26475 scaffold_20 + retained_intron 2137292-2137342 asmbl_26474 // Exon Skipping and Retention # skipped_exon 2290860-2292024 (orient:+) max_ev_support = 1 # retained_exon 2290959-2291069 (orient:+) max_ev_support = 2 scaffold_20 + retained_exons 2290959-2291069 asmbl_26480 scaffold_20 + intron_skips_exon 2290860-2292024 asmbl_26481 // Exon Skipping and Retention # skipped_exon 2391876-2393012 (orient:+) max_ev_support = 1 # retained_exon 2392380-2392427 (orient:+) max_ev_support = 1 scaffold_20 + retained_exons 2392380-2392427 asmbl_26484 scaffold_20 + intron_skips_exon 2391876-2393012 asmbl_26485 // Exon Skipping and Retention # skipped_exon 2403016-2404377 (orient:+) max_ev_support = 1 # retained_exon 2403443-2403500 (orient:+) max_ev_support = 2 scaffold_20 + retained_exons 2403443-2403500 asmbl_26487 scaffold_20 + intron_skips_exon 2403016-2404377 asmbl_26489,asmbl_26490 // Exon Skipping and Retention # skipped_exon 3036350-3037166 (orient:+) max_ev_support = 3 # retained_exon 3036835-3036908 (orient:+) max_ev_support = 2 scaffold_20 + retained_exons 3036835-3036908 asmbl_26515 scaffold_20 + intron_skips_exon 3036350-3037166 asmbl_26514 // Retained and Spliced Intron # retained_intron 4562562-4562796 (orient:+) max_ev_support = 2 # spliced_intron 4562562-4562796 (orient:+) max_ev_support = 3 scaffold_20 + intron 4562562-4562796 asmbl_26595 scaffold_20 + retained_intron 4562562-4562796 asmbl_26596 // Retained and Spliced Intron # retained_intron 5115892-5116021 (orient:+) max_ev_support = 2 # spliced_intron 5115892-5116021 (orient:+) max_ev_support = 3 scaffold_20 + intron 5115892-5116021 asmbl_26602 scaffold_20 + retained_intron 5115892-5116021 asmbl_26603 // Retained and Spliced Intron # retained_intron 5180909-5180942 (orient:+) max_ev_support = 1 # spliced_intron 5180909-5180942 (orient:+) max_ev_support = 1 scaffold_20 + intron 5180909-5180942 asmbl_26610 scaffold_20 + retained_intron 5180909-5180942 asmbl_26609 // Retained and Spliced Intron # retained_intron 5180977-5181010 (orient:+) max_ev_support = 1 # spliced_intron 5180977-5181010 (orient:+) max_ev_support = 1 scaffold_20 + intron 5180977-5181010 asmbl_26610 scaffold_20 + retained_intron 5180977-5181010 asmbl_26609 // Retained and Spliced Intron # retained_intron 5910780-5911000 (orient:+) max_ev_support = 4 # spliced_intron 5910780-5911000 (orient:+) max_ev_support = 1 scaffold_20 + intron 5910780-5911000 asmbl_26648 scaffold_20 + retained_intron 5910780-5911000 asmbl_26647 // Exon Skipping and Retention # skipped_exon 6715123-6717153 (orient:+) max_ev_support = 1 # retained_exon 6716651-6716790 (orient:+) max_ev_support = 1 scaffold_20 + retained_exons 6716651-6716790 asmbl_26670 scaffold_20 + intron_skips_exon 6715123-6717153 asmbl_26669 // Retained and Spliced Intron # retained_intron 6975652-6975749 (orient:+) max_ev_support = 1 # spliced_intron 6975652-6975749 (orient:+) max_ev_support = 2 scaffold_20 + intron 6975652-6975749 asmbl_26687 scaffold_20 + retained_intron 6975652-6975749 asmbl_26690 // Exon Skipping and Retention # skipped_exon 7196433-7197471 (orient:+) max_ev_support = 1 # retained_exon 7196574-7197202 (orient:+) max_ev_support = 3 scaffold_20 + retained_exons 7196574-7196772,7197123-7197202 asmbl_26706 scaffold_20 + intron_skips_exon 7196433-7197471 asmbl_26707 // Exon Skipping and Retention # skipped_exon 7195568-7196573 (orient:+) max_ev_support = 3 # retained_exon 7195820-7196432 (orient:+) max_ev_support = 1 scaffold_20 + retained_exons 7195820-7196018,7196353-7196432 asmbl_26707 scaffold_20 + intron_skips_exon 7195568-7196573 asmbl_26706 // Retained and Spliced Intron # retained_intron 7268277-7268638 (orient:+) max_ev_support = 2 # spliced_intron 7268277-7268638 (orient:+) max_ev_support = 2 scaffold_20 + intron 7268277-7268638 asmbl_26717 scaffold_20 + retained_intron 7268277-7268638 asmbl_26718,asmbl_26719 // Retained and Spliced Intron # retained_intron 8129408-8129479 (orient:+) max_ev_support = 3 # spliced_intron 8129408-8129479 (orient:+) max_ev_support = 1 scaffold_20 + intron 8129408-8129479 asmbl_26746 scaffold_20 + retained_intron 8129408-8129479 asmbl_26745 // Retained and Spliced Intron # retained_intron 8129531-8130806 (orient:+) max_ev_support = 7 # spliced_intron 8129531-8130806 (orient:+) max_ev_support = 1 scaffold_20 + intron 8129531-8130806 asmbl_26746 scaffold_20 + retained_intron 8129531-8130806 asmbl_26745 // Retained and Spliced Intron # retained_intron 8167955-8168079 (orient:+) max_ev_support = 1 # spliced_intron 8167955-8168079 (orient:+) max_ev_support = 1 scaffold_20 + intron 8167955-8168079 asmbl_26748 scaffold_20 + retained_intron 8167955-8168079 asmbl_26749 // Retained and Spliced Intron # retained_intron 8292117-8292345 (orient:+) max_ev_support = 3 # spliced_intron 8292117-8292345 (orient:+) max_ev_support = 2 scaffold_20 + intron 8292117-8292345 asmbl_26757,asmbl_26758,asmbl_26759,asmbl_26760 scaffold_20 + retained_intron 8292117-8292345 asmbl_26756,asmbl_26761 // Retained and Spliced Intron # retained_intron 8292472-8293196 (orient:+) max_ev_support = 3 # spliced_intron 8292472-8293196 (orient:+) max_ev_support = 2 scaffold_20 + intron 8292472-8293196 asmbl_26757,asmbl_26759,asmbl_26760,asmbl_26761 scaffold_20 + retained_intron 8292472-8293196 asmbl_26756,asmbl_26758 // Retained and Spliced Intron # retained_intron 8293418-8293589 (orient:+) max_ev_support = 3 # spliced_intron 8293418-8293589 (orient:+) max_ev_support = 1 scaffold_20 + intron 8293418-8293589 asmbl_26762 scaffold_20 + retained_intron 8293418-8293589 asmbl_26756,asmbl_26757,asmbl_26758,asmbl_26759 // Retained and Spliced Intron # retained_intron 8293604-8293726 (orient:+) max_ev_support = 3 # spliced_intron 8293604-8293726 (orient:+) max_ev_support = 1 scaffold_20 + intron 8293604-8293726 asmbl_26759,asmbl_26762 scaffold_20 + retained_intron 8293604-8293726 asmbl_26756,asmbl_26757,asmbl_26758 // Retained and Spliced Intron # retained_intron 8323604-8323724 (orient:+) max_ev_support = 2 # spliced_intron 8323604-8323724 (orient:+) max_ev_support = 2 scaffold_20 + intron 8323604-8323724 asmbl_26763 scaffold_20 + retained_intron 8323604-8323724 asmbl_26764,asmbl_26765 // Exon Skipping and Retention # skipped_exon 8431167-8431827 (orient:+) max_ev_support = 2 # retained_exon 8431370-8431467 (orient:+) max_ev_support = 2 scaffold_20 + retained_exons 8431370-8431467 asmbl_26777 scaffold_20 + intron_skips_exon 8431167-8431827 asmbl_26776 // Retained and Spliced Intron # retained_intron 9104952-9105052 (orient:+) max_ev_support = 1 # spliced_intron 9104952-9105052 (orient:+) max_ev_support = 3 scaffold_20 + intron 9104952-9105052 asmbl_26825,asmbl_26828,asmbl_26831 scaffold_20 + retained_intron 9104952-9105052 asmbl_26830 // Retained and Spliced Intron # retained_intron 9185074-9185156 (orient:+) max_ev_support = 2 # spliced_intron 9185074-9185156 (orient:+) max_ev_support = 1 scaffold_20 + intron 9185074-9185156 asmbl_26842 scaffold_20 + retained_intron 9185074-9185156 asmbl_26841 // Exon Skipping and Retention # skipped_exon 9185074-9185347 (orient:+) max_ev_support = 2 # retained_exon 9185157-9185236 (orient:+) max_ev_support = 1 scaffold_20 + retained_exons 9185157-9185236 asmbl_26842 scaffold_20 + intron_skips_exon 9185074-9185347 asmbl_26840 // Exon Skipping and Retention # skipped_exon 9517409-9519809 (orient:+) max_ev_support = 2 # retained_exon 9517588-9517614 (orient:+) max_ev_support = 2 scaffold_20 + retained_exons 9517588-9517614 asmbl_26859 scaffold_20 + intron_skips_exon 9517409-9519809 asmbl_26858 // Exon Skipping and Retention # skipped_exon 9532067-9533451 (orient:+) max_ev_support = 1 # retained_exon 9532630-9532662 (orient:+) max_ev_support = 2 scaffold_20 + retained_exons 9532630-9532662 asmbl_26860,asmbl_26861 scaffold_20 + intron_skips_exon 9532067-9533451 asmbl_26864 // Retained and Spliced Intron # retained_intron 9628124-9629033 (orient:+) max_ev_support = 4 # spliced_intron 9628124-9629033 (orient:+) max_ev_support = 1 scaffold_20 + intron 9628124-9629033 asmbl_26871 scaffold_20 + retained_intron 9628124-9629033 asmbl_26869,asmbl_26870 // Retained and Spliced Intron # retained_intron 9628124-9630290 (orient:+) max_ev_support = 4 # spliced_intron 9628124-9630290 (orient:+) max_ev_support = 1 scaffold_20 + intron 9628124-9630290 asmbl_26872 scaffold_20 + retained_intron 9628124-9630290 asmbl_26869 // Retained and Spliced Intron # retained_intron 9629566-9630290 (orient:+) max_ev_support = 2 # spliced_intron 9629566-9630290 (orient:+) max_ev_support = 1 scaffold_20 + intron 9629566-9630290 asmbl_26870,asmbl_26871 scaffold_20 + retained_intron 9629566-9630290 asmbl_26869 // Exon Skipping and Retention # skipped_exon 9628124-9630290 (orient:+) max_ev_support = 1 # retained_exon 9629034-9629565 (orient:+) max_ev_support = 1 scaffold_20 + retained_exons 9629034-9629565 asmbl_26871 scaffold_20 + intron_skips_exon 9628124-9630290 asmbl_26872 // Exon Skipping and Retention # skipped_exon 9968528-9969979 (orient:+) max_ev_support = 3 # retained_exon 9969246-9969260 (orient:+) max_ev_support = 2 scaffold_20 + retained_exons 9969246-9969260 asmbl_26917 scaffold_20 + intron_skips_exon 9968528-9969979 asmbl_26916 // Exon Skipping and Retention # skipped_exon 10132449-10132774 (orient:+) max_ev_support = 1 # retained_exon 10132650-10132661 (orient:+) max_ev_support = 1 scaffold_20 + retained_exons 10132650-10132661 asmbl_26936 scaffold_20 + intron_skips_exon 10132449-10132774 asmbl_26937 // Retained and Spliced Intron # retained_intron 10135588-10137307 (orient:+) max_ev_support = 3 # spliced_intron 10135588-10137307 (orient:+) max_ev_support = 1 scaffold_20 + intron 10135588-10137307 asmbl_26940 scaffold_20 + retained_intron 10135588-10137307 asmbl_26938 // Exon Skipping and Retention # skipped_exon 10313546-10315402 (orient:+) max_ev_support = 2 # retained_exon 10314450-10314503 (orient:+) max_ev_support = 2 scaffold_20 + retained_exons 10314450-10314503 asmbl_26945,asmbl_26947 scaffold_20 + intron_skips_exon 10313546-10315402 asmbl_26946 // Retained and Spliced Intron # retained_intron 10384347-10384667 (orient:+) max_ev_support = 1 # spliced_intron 10384347-10384667 (orient:+) max_ev_support = 2 scaffold_20 + intron 10384347-10384667 asmbl_26955 scaffold_20 + retained_intron 10384347-10384667 asmbl_26958 // Retained and Spliced Intron # retained_intron 10384363-10384458 (orient:+) max_ev_support = 1 # spliced_intron 10384363-10384458 (orient:+) max_ev_support = 1 scaffold_20 + intron 10384363-10384458 asmbl_26960 scaffold_20 + retained_intron 10384363-10384458 asmbl_26958 // Retained and Spliced Intron # retained_intron 10384363-10384667 (orient:+) max_ev_support = 1 # spliced_intron 10384363-10384667 (orient:+) max_ev_support = 3 scaffold_20 + intron 10384363-10384667 asmbl_26954,asmbl_26961 scaffold_20 + retained_intron 10384363-10384667 asmbl_26958 // Retained and Spliced Intron # retained_intron 10384363-10384687 (orient:+) max_ev_support = 1 # spliced_intron 10384363-10384687 (orient:+) max_ev_support = 1 scaffold_20 + intron 10384363-10384687 asmbl_26959 scaffold_20 + retained_intron 10384363-10384687 asmbl_26958 // Retained and Spliced Intron # retained_intron 10384550-10384667 (orient:+) max_ev_support = 1 # spliced_intron 10384550-10384667 (orient:+) max_ev_support = 1 scaffold_20 + intron 10384550-10384667 asmbl_26960,asmbl_26962 scaffold_20 + retained_intron 10384550-10384667 asmbl_26958 // Retained and Spliced Intron # retained_intron 10384754-10384960 (orient:+) max_ev_support = 1 # spliced_intron 10384754-10384960 (orient:+) max_ev_support = 1 scaffold_20 + intron 10384754-10384960 asmbl_26960,asmbl_26962 scaffold_20 + retained_intron 10384754-10384960 asmbl_26958 // Retained and Spliced Intron # retained_intron 10384754-10385038 (orient:+) max_ev_support = 1 # spliced_intron 10384754-10385038 (orient:+) max_ev_support = 3 scaffold_20 + intron 10384754-10385038 asmbl_26954,asmbl_26955,asmbl_26959,asmbl_26961 scaffold_20 + retained_intron 10384754-10385038 asmbl_26958 // Exon Skipping and Retention # skipped_exon 10384363-10384667 (orient:+) max_ev_support = 3 # retained_exon 10384459-10384549 (orient:+) max_ev_support = 1 scaffold_20 + retained_exons 10384459-10384549 asmbl_26960 scaffold_20 + intron_skips_exon 10384363-10384667 asmbl_26954,asmbl_26961 // Exon Skipping and Retention # skipped_exon 10384347-10384667 (orient:+) max_ev_support = 2 # retained_exon 10384459-10384549 (orient:+) max_ev_support = 1 scaffold_20 + retained_exons 10384459-10384549 asmbl_26960 scaffold_20 + intron_skips_exon 10384347-10384667 asmbl_26955 // Exon Skipping and Retention # skipped_exon 10384363-10384687 (orient:+) max_ev_support = 1 # retained_exon 10384459-10384549 (orient:+) max_ev_support = 1 scaffold_20 + retained_exons 10384459-10384549 asmbl_26960 scaffold_20 + intron_skips_exon 10384363-10384687 asmbl_26959 // Retained and Spliced Intron # retained_intron 10660786-10661477 (orient:+) max_ev_support = 3 # spliced_intron 10660786-10661477 (orient:+) max_ev_support = 3 scaffold_20 + intron 10660786-10661477 asmbl_26976 scaffold_20 + retained_intron 10660786-10661477 asmbl_26977 // Exon Skipping and Retention # skipped_exon 10671068-10671939 (orient:+) max_ev_support = 1 # retained_exon 10671489-10671530 (orient:+) max_ev_support = 2 scaffold_20 + retained_exons 10671489-10671530 asmbl_26980,asmbl_26982 scaffold_20 + intron_skips_exon 10671068-10671939 asmbl_26981 // Retained and Spliced Intron # retained_intron 10787428-10787609 (orient:+) max_ev_support = 3 # spliced_intron 10787428-10787609 (orient:+) max_ev_support = 2 scaffold_20 + intron 10787428-10787609 asmbl_26994 scaffold_20 + retained_intron 10787428-10787609 asmbl_26992,asmbl_26993,asmbl_26995 // Retained and Spliced Intron # retained_intron 10861471-10862078 (orient:+) max_ev_support = 3 # spliced_intron 10861471-10862078 (orient:+) max_ev_support = 1 scaffold_20 + intron 10861471-10862078 asmbl_26999,asmbl_27000 scaffold_20 + retained_intron 10861471-10862078 asmbl_26996,asmbl_26998 // Retained and Spliced Intron # retained_intron 10856589-10856956 (orient:+) max_ev_support = 2 # spliced_intron 10856589-10856956 (orient:+) max_ev_support = 3 scaffold_20 + intron 10856589-10856956 asmbl_26996,asmbl_26999 scaffold_20 + retained_intron 10856589-10856956 asmbl_26997 // Retained and Spliced Intron # retained_intron 10986544-10986914 (orient:+) max_ev_support = 2 # spliced_intron 10986544-10986914 (orient:+) max_ev_support = 3 scaffold_20 + intron 10986544-10986914 asmbl_27004 scaffold_20 + retained_intron 10986544-10986914 asmbl_27005 // Retained and Spliced Intron # retained_intron 11142153-11142251 (orient:+) max_ev_support = 3 # spliced_intron 11142153-11142251 (orient:+) max_ev_support = 3 scaffold_20 + intron 11142153-11142251 asmbl_27014 scaffold_20 + retained_intron 11142153-11142251 asmbl_27015,asmbl_27021,asmbl_27022 // Retained and Spliced Intron # retained_intron 11285643-11285794 (orient:+) max_ev_support = 2 # spliced_intron 11285643-11285794 (orient:+) max_ev_support = 2 scaffold_20 + intron 11285643-11285794 asmbl_27024,asmbl_27026 scaffold_20 + retained_intron 11285643-11285794 asmbl_27025,asmbl_27027 // Retained and Spliced Intron # retained_intron 11383090-11383164 (orient:+) max_ev_support = 3 # spliced_intron 11383090-11383164 (orient:+) max_ev_support = 1 scaffold_20 + intron 11383090-11383164 asmbl_27033 scaffold_20 + retained_intron 11383090-11383164 asmbl_27032,asmbl_27034,asmbl_27035,asmbl_27036,asmbl_27037,asmbl_27038,asmbl_27039 // Retained and Spliced Intron # retained_intron 11438117-11438285 (orient:+) max_ev_support = 2 # spliced_intron 11438117-11438285 (orient:+) max_ev_support = 1 scaffold_20 + intron 11438117-11438285 asmbl_27046 scaffold_20 + retained_intron 11438117-11438285 asmbl_27044,asmbl_27045 // Retained and Spliced Intron # retained_intron 11438436-11438575 (orient:+) max_ev_support = 3 # spliced_intron 11438436-11438575 (orient:+) max_ev_support = 3 scaffold_20 + intron 11438436-11438575 asmbl_27045,asmbl_27046 scaffold_20 + retained_intron 11438436-11438575 asmbl_27044 // Exon Skipping and Retention # skipped_exon 11480461-11482106 (orient:+) max_ev_support = 2 # retained_exon 11481215-11481277 (orient:+) max_ev_support = 3 scaffold_20 + retained_exons 11481215-11481277 asmbl_27051,asmbl_27058 scaffold_20 + intron_skips_exon 11480461-11482106 asmbl_27052,asmbl_27054,asmbl_27059 // Exon Skipping and Retention # skipped_exon 11480461-11483459 (orient:+) max_ev_support = 1 # retained_exon 11482107-11482530 (orient:+) max_ev_support = 2 scaffold_20 + retained_exons 11482107-11482194,11482356-11482530 asmbl_27052 scaffold_20 + intron_skips_exon 11480461-11483459 asmbl_27057 // Exon Skipping and Retention # skipped_exon 11566328-11568474 (orient:+) max_ev_support = 2 # retained_exon 11567538-11567899 (orient:+) max_ev_support = 3 scaffold_20 + retained_exons 11567538-11567899 asmbl_27075 scaffold_20 + intron_skips_exon 11566328-11568474 asmbl_27077 // Exon Skipping and Retention # skipped_exon 11566279-11568474 (orient:+) max_ev_support = 1 # retained_exon 11567538-11567899 (orient:+) max_ev_support = 3 scaffold_20 + retained_exons 11567538-11567899 asmbl_27075 scaffold_20 + intron_skips_exon 11566279-11568474 asmbl_27079 // Retained and Spliced Intron # retained_intron 11671056-11671178 (orient:+) max_ev_support = 2 # spliced_intron 11671056-11671178 (orient:+) max_ev_support = 2 scaffold_20 + intron 11671056-11671178 asmbl_27085 scaffold_20 + retained_intron 11671056-11671178 asmbl_27086 // Retained and Spliced Intron # retained_intron 11924841-11925165 (orient:+) max_ev_support = 2 # spliced_intron 11924841-11925165 (orient:+) max_ev_support = 2 scaffold_20 + intron 11924841-11925165 asmbl_27103 scaffold_20 + retained_intron 11924841-11925165 asmbl_27102 // Retained and Spliced Intron # retained_intron 11931029-11931277 (orient:+) max_ev_support = 1 # spliced_intron 11931029-11931277 (orient:+) max_ev_support = 2 scaffold_20 + intron 11931029-11931277 asmbl_27104,asmbl_27105 scaffold_20 + retained_intron 11931029-11931277 asmbl_27106 // Exon Skipping and Retention # skipped_exon 12113774-12115279 (orient:+) max_ev_support = 1 # retained_exon 12114358-12114429 (orient:+) max_ev_support = 2 scaffold_20 + retained_exons 12114358-12114429 asmbl_27113,asmbl_27114,asmbl_27115 scaffold_20 + intron_skips_exon 12113774-12115279 asmbl_27116,asmbl_27117 // Exon Skipping and Retention # skipped_exon 58137-58705 (orient:-) max_ev_support = 2 # retained_exon 58223-58306 (orient:-) max_ev_support = 2 scaffold_21 - retained_exons 58223-58306 asmbl_27272,asmbl_27273 scaffold_21 - intron_skips_exon 58137-58705 asmbl_27271 // Retained and Spliced Intron # retained_intron 233295-233468 (orient:-) max_ev_support = 1 # spliced_intron 233295-233468 (orient:-) max_ev_support = 2 scaffold_21 - intron 233295-233468 asmbl_27279 scaffold_21 - retained_intron 233295-233468 asmbl_27280 // Exon Skipping and Retention # skipped_exon 255543-257073 (orient:-) max_ev_support = 1 # retained_exon 255962-256224 (orient:-) max_ev_support = 3 scaffold_21 - retained_exons 255962-256002,256174-256224 asmbl_27282,asmbl_27286 scaffold_21 - intron_skips_exon 255543-257073 asmbl_27291 // Exon Skipping and Retention # skipped_exon 256225-257555 (orient:-) max_ev_support = 1 # retained_exon 257074-257152 (orient:-) max_ev_support = 2 scaffold_21 - retained_exons 257074-257152 asmbl_27282,asmbl_27286 scaffold_21 - intron_skips_exon 256225-257555 asmbl_27289 // Exon Skipping and Retention # skipped_exon 256225-257073 (orient:-) max_ev_support = 2 # retained_exon 256485-256741 (orient:-) max_ev_support = 1 scaffold_21 - retained_exons 256485-256535,256707-256741 asmbl_27283,asmbl_27284,asmbl_27288,asmbl_27295,asmbl_27296 scaffold_21 - intron_skips_exon 256225-257073 asmbl_27282,asmbl_27286 // Exon Skipping and Retention # skipped_exon 257153-257645 (orient:-) max_ev_support = 2 # retained_exon 257435-257452 (orient:-) max_ev_support = 1 scaffold_21 - retained_exons 257435-257452 asmbl_27283 scaffold_21 - intron_skips_exon 257153-257645 asmbl_27282,asmbl_27284,asmbl_27287,asmbl_27288 // Exon Skipping and Retention # skipped_exon 257153-257555 (orient:-) max_ev_support = 1 # retained_exon 257435-257452 (orient:-) max_ev_support = 1 scaffold_21 - retained_exons 257435-257452 asmbl_27283 scaffold_21 - intron_skips_exon 257153-257555 asmbl_27286,asmbl_27290,asmbl_27292,asmbl_27293,asmbl_27294,asmbl_27296,asmbl_27297 // Exon Skipping and Retention # skipped_exon 256225-257073 (orient:-) max_ev_support = 2 # retained_exon 256485-256535 (orient:-) max_ev_support = 1 scaffold_21 - retained_exons 256485-256535 asmbl_27285,asmbl_27294,asmbl_27297 scaffold_21 - intron_skips_exon 256225-257073 asmbl_27282,asmbl_27286 // Retained and Spliced Intron # retained_intron 256742-257073 (orient:-) max_ev_support = 1 # spliced_intron 256742-257073 (orient:-) max_ev_support = 2 scaffold_21 - intron 256742-257073 asmbl_27283,asmbl_27284,asmbl_27287,asmbl_27288,asmbl_27290,asmbl_27295,asmbl_27296 scaffold_21 - retained_intron 256742-257073 asmbl_27285,asmbl_27292,asmbl_27293,asmbl_27294,asmbl_27297 // Retained and Spliced Intron # retained_intron 254930-255185 (orient:-) max_ev_support = 1 # spliced_intron 254930-255185 (orient:-) max_ev_support = 2 scaffold_21 - intron 254930-255185 asmbl_27282,asmbl_27283,asmbl_27284,asmbl_27285,asmbl_27286,asmbl_27291 scaffold_21 - retained_intron 254930-255185 asmbl_27289,asmbl_27290,asmbl_27292,asmbl_27293 // Retained and Spliced Intron # retained_intron 255225-255467 (orient:-) max_ev_support = 1 # spliced_intron 255225-255467 (orient:-) max_ev_support = 3 scaffold_21 - intron 255225-255467 asmbl_27282,asmbl_27283,asmbl_27284,asmbl_27285,asmbl_27286,asmbl_27288,asmbl_27289,asmbl_27291,asmbl_27292,asmbl_27294,asmbl_27295,asmbl_27296,asmbl_27297 scaffold_21 - retained_intron 255225-255467 asmbl_27290,asmbl_27293 // Retained and Spliced Intron # retained_intron 255543-255961 (orient:-) max_ev_support = 1 # spliced_intron 255543-255961 (orient:-) max_ev_support = 3 scaffold_21 - intron 255543-255961 asmbl_27282,asmbl_27283,asmbl_27284,asmbl_27285,asmbl_27286,asmbl_27288,asmbl_27289,asmbl_27294,asmbl_27295,asmbl_27296,asmbl_27297 scaffold_21 - retained_intron 255543-255961 asmbl_27290,asmbl_27292,asmbl_27293 // Retained and Spliced Intron # retained_intron 256225-256484 (orient:-) max_ev_support = 1 # spliced_intron 256225-256484 (orient:-) max_ev_support = 1 scaffold_21 - intron 256225-256484 asmbl_27283,asmbl_27284,asmbl_27285,asmbl_27288,asmbl_27294,asmbl_27295,asmbl_27296,asmbl_27297 scaffold_21 - retained_intron 256225-256484 asmbl_27290,asmbl_27292,asmbl_27293 // Exon Skipping and Retention # skipped_exon 256225-257073 (orient:-) max_ev_support = 2 # retained_exon 256707-256741 (orient:-) max_ev_support = 1 scaffold_21 - retained_exons 256707-256741 asmbl_27290 scaffold_21 - intron_skips_exon 256225-257073 asmbl_27282,asmbl_27286 // Exon Skipping and Retention # skipped_exon 402180-403833 (orient:-) max_ev_support = 1 # retained_exon 402606-403222 (orient:-) max_ev_support = 3 scaffold_21 - retained_exons 402606-402684,402825-402915,403141-403222 asmbl_27304 scaffold_21 - intron_skips_exon 402180-403833 asmbl_27309 // Retained and Spliced Intron # retained_intron 405731-406300 (orient:-) max_ev_support = 3 # spliced_intron 405731-406300 (orient:-) max_ev_support = 2 scaffold_21 - intron 405731-406300 asmbl_27311,asmbl_27312 scaffold_21 - retained_intron 405731-406300 asmbl_27310,asmbl_27314,asmbl_27315,asmbl_27316 // Retained and Spliced Intron # retained_intron 405731-406307 (orient:-) max_ev_support = 3 # spliced_intron 405731-406307 (orient:-) max_ev_support = 2 scaffold_21 - intron 405731-406307 asmbl_27313 scaffold_21 - retained_intron 405731-406307 asmbl_27310,asmbl_27314,asmbl_27315,asmbl_27316 // Retained and Spliced Intron # retained_intron 407848-408231 (orient:-) max_ev_support = 2 # spliced_intron 407848-408231 (orient:-) max_ev_support = 3 scaffold_21 - intron 407848-408231 asmbl_27310,asmbl_27311,asmbl_27316 scaffold_21 - retained_intron 407848-408231 asmbl_27312,asmbl_27314,asmbl_27315 // Retained and Spliced Intron # retained_intron 406429-406790 (orient:-) max_ev_support = 2 # spliced_intron 406429-406790 (orient:-) max_ev_support = 3 scaffold_21 - intron 406429-406790 asmbl_27310,asmbl_27311,asmbl_27312,asmbl_27313,asmbl_27314 scaffold_21 - retained_intron 406429-406790 asmbl_27315,asmbl_27316 // Retained and Spliced Intron # retained_intron 457511-457733 (orient:-) max_ev_support = 2 # spliced_intron 457511-457733 (orient:-) max_ev_support = 2 scaffold_21 - intron 457511-457733 asmbl_27321 scaffold_21 - retained_intron 457511-457733 asmbl_27322 // Retained and Spliced Intron # retained_intron 457059-457190 (orient:-) max_ev_support = 1 # spliced_intron 457059-457190 (orient:-) max_ev_support = 2 scaffold_21 - intron 457059-457190 asmbl_27321 scaffold_21 - retained_intron 457059-457190 asmbl_27323,asmbl_27324 // Retained and Spliced Intron # retained_intron 495998-496253 (orient:-) max_ev_support = 2 # spliced_intron 495998-496253 (orient:-) max_ev_support = 3 scaffold_21 - intron 495998-496253 asmbl_27328,asmbl_27330 scaffold_21 - retained_intron 495998-496253 asmbl_27329 // Retained and Spliced Intron # retained_intron 494987-495125 (orient:-) max_ev_support = 2 # spliced_intron 494987-495125 (orient:-) max_ev_support = 3 scaffold_21 - intron 494987-495125 asmbl_27328,asmbl_27329 scaffold_21 - retained_intron 494987-495125 asmbl_27330 // Retained and Spliced Intron # retained_intron 532678-533027 (orient:-) max_ev_support = 4 # spliced_intron 532678-533027 (orient:-) max_ev_support = 3 scaffold_21 - intron 532678-533027 asmbl_27333 scaffold_21 - retained_intron 532678-533027 asmbl_27332 // Retained and Spliced Intron # retained_intron 706527-706986 (orient:-) max_ev_support = 1 # spliced_intron 706527-706986 (orient:-) max_ev_support = 2 scaffold_21 - intron 706527-706986 asmbl_27350 scaffold_21 - retained_intron 706527-706986 asmbl_27354,asmbl_27355 // Retained and Spliced Intron # retained_intron 705967-706986 (orient:-) max_ev_support = 3 # spliced_intron 705967-706986 (orient:-) max_ev_support = 2 scaffold_21 - intron 705967-706986 asmbl_27352 scaffold_21 - retained_intron 705967-706986 asmbl_27355 // Retained and Spliced Intron # retained_intron 1054629-1054775 (orient:-) max_ev_support = 2 # spliced_intron 1054629-1054775 (orient:-) max_ev_support = 2 scaffold_21 - intron 1054629-1054775 asmbl_27377,asmbl_27382 scaffold_21 - retained_intron 1054629-1054775 asmbl_27374,asmbl_27376,asmbl_27379,asmbl_27380,asmbl_27381 // Retained and Spliced Intron # retained_intron 1053775-1054170 (orient:-) max_ev_support = 2 # spliced_intron 1053775-1054170 (orient:-) max_ev_support = 2 scaffold_21 - intron 1053775-1054170 asmbl_27374,asmbl_27380 scaffold_21 - retained_intron 1053775-1054170 asmbl_27377,asmbl_27378,asmbl_27381,asmbl_27382 // Retained and Spliced Intron # retained_intron 1053818-1053982 (orient:-) max_ev_support = 2 # spliced_intron 1053818-1053982 (orient:-) max_ev_support = 2 scaffold_21 - intron 1053818-1053982 asmbl_27376,asmbl_27379 scaffold_21 - retained_intron 1053818-1053982 asmbl_27377,asmbl_27378,asmbl_27381,asmbl_27382 // Retained and Spliced Intron # retained_intron 1054388-1054549 (orient:-) max_ev_support = 2 # spliced_intron 1054388-1054549 (orient:-) max_ev_support = 2 scaffold_21 - intron 1054388-1054549 asmbl_27376,asmbl_27380,asmbl_27381 scaffold_21 - retained_intron 1054388-1054549 asmbl_27378 // Retained and Spliced Intron # retained_intron 1054388-1054575 (orient:-) max_ev_support = 2 # spliced_intron 1054388-1054575 (orient:-) max_ev_support = 2 scaffold_21 - intron 1054388-1054575 asmbl_27374,asmbl_27377,asmbl_27379,asmbl_27382 scaffold_21 - retained_intron 1054388-1054575 asmbl_27378 // Retained and Spliced Intron # retained_intron 1171743-1171837 (orient:-) max_ev_support = 1 # spliced_intron 1171743-1171837 (orient:-) max_ev_support = 2 scaffold_21 - intron 1171743-1171837 asmbl_27383,asmbl_27385 scaffold_21 - retained_intron 1171743-1171837 asmbl_27384 // Retained and Spliced Intron # retained_intron 1300424-1301225 (orient:-) max_ev_support = 3 # spliced_intron 1300424-1301225 (orient:-) max_ev_support = 2 scaffold_21 - intron 1300424-1301225 asmbl_27406,asmbl_27408,asmbl_27409 scaffold_21 - retained_intron 1300424-1301225 asmbl_27404,asmbl_27405,asmbl_27407 // Retained and Spliced Intron # retained_intron 1861553-1861668 (orient:-) max_ev_support = 1 # spliced_intron 1861553-1861668 (orient:-) max_ev_support = 2 scaffold_21 - intron 1861553-1861668 asmbl_27425 scaffold_21 - retained_intron 1861553-1861668 asmbl_27426 // Exon Skipping and Retention # skipped_exon 2165861-2166831 (orient:-) max_ev_support = 1 # retained_exon 2166517-2166597 (orient:-) max_ev_support = 2 scaffold_21 - retained_exons 2166517-2166597 asmbl_27434,asmbl_27436,asmbl_27437 scaffold_21 - intron_skips_exon 2165861-2166831 asmbl_27435 // Retained and Spliced Intron # retained_intron 2162273-2162399 (orient:-) max_ev_support = 1 # spliced_intron 2162273-2162399 (orient:-) max_ev_support = 2 scaffold_21 - intron 2162273-2162399 asmbl_27434 scaffold_21 - retained_intron 2162273-2162399 asmbl_27436 // Retained and Spliced Intron # retained_intron 2470395-2470715 (orient:-) max_ev_support = 2 # spliced_intron 2470395-2470715 (orient:-) max_ev_support = 2 scaffold_21 - intron 2470395-2470715 asmbl_27457,asmbl_27460 scaffold_21 - retained_intron 2470395-2470715 asmbl_27456,asmbl_27461 // Retained and Spliced Intron # retained_intron 2475393-2475501 (orient:-) max_ev_support = 1 # spliced_intron 2475393-2475501 (orient:-) max_ev_support = 2 scaffold_21 - intron 2475393-2475501 asmbl_27456,asmbl_27457,asmbl_27462 scaffold_21 - retained_intron 2475393-2475501 asmbl_27461 // Retained and Spliced Intron # retained_intron 2654346-2654855 (orient:-) max_ev_support = 2 # spliced_intron 2654346-2654855 (orient:-) max_ev_support = 3 scaffold_21 - intron 2654346-2654855 asmbl_27483,asmbl_27485 scaffold_21 - retained_intron 2654346-2654855 asmbl_27484,asmbl_27486,asmbl_27487,asmbl_27488,asmbl_27489 // Retained and Spliced Intron # retained_intron 2654905-2655051 (orient:-) max_ev_support = 2 # spliced_intron 2654905-2655051 (orient:-) max_ev_support = 3 scaffold_21 - intron 2654905-2655051 asmbl_27483,asmbl_27485,asmbl_27486,asmbl_27488,asmbl_27489 scaffold_21 - retained_intron 2654905-2655051 asmbl_27484,asmbl_27487 // Retained and Spliced Intron # retained_intron 2947813-2947912 (orient:-) max_ev_support = 2 # spliced_intron 2947813-2947912 (orient:-) max_ev_support = 2 scaffold_21 - intron 2947813-2947912 asmbl_27495 scaffold_21 - retained_intron 2947813-2947912 asmbl_27492 // Retained and Spliced Intron # retained_intron 2946480-2946674 (orient:-) max_ev_support = 2 # spliced_intron 2946480-2946674 (orient:-) max_ev_support = 2 scaffold_21 - intron 2946480-2946674 asmbl_27492,asmbl_27493,asmbl_27495 scaffold_21 - retained_intron 2946480-2946674 asmbl_27494 // Retained and Spliced Intron # retained_intron 3112080-3112167 (orient:-) max_ev_support = 1 # spliced_intron 3112080-3112167 (orient:-) max_ev_support = 2 scaffold_21 - intron 3112080-3112167 asmbl_27506,asmbl_27508,asmbl_27509 scaffold_21 - retained_intron 3112080-3112167 asmbl_27507 // Retained and Spliced Intron # retained_intron 3112262-3112397 (orient:-) max_ev_support = 1 # spliced_intron 3112262-3112397 (orient:-) max_ev_support = 2 scaffold_21 - intron 3112262-3112397 asmbl_27506,asmbl_27509 scaffold_21 - retained_intron 3112262-3112397 asmbl_27507,asmbl_27508 // Retained and Spliced Intron # retained_intron 3117600-3118025 (orient:-) max_ev_support = 3 # spliced_intron 3117600-3118025 (orient:-) max_ev_support = 1 scaffold_21 - intron 3117600-3118025 asmbl_27512 scaffold_21 - retained_intron 3117600-3118025 asmbl_27510 // Retained and Spliced Intron # retained_intron 3117600-3118195 (orient:-) max_ev_support = 3 # spliced_intron 3117600-3118195 (orient:-) max_ev_support = 2 scaffold_21 - intron 3117600-3118195 asmbl_27511 scaffold_21 - retained_intron 3117600-3118195 asmbl_27510 // Exon Skipping and Retention # skipped_exon 3126012-3126710 (orient:-) max_ev_support = 2 # retained_exon 3126397-3126458 (orient:-) max_ev_support = 2 scaffold_21 - retained_exons 3126397-3126458 asmbl_27514,asmbl_27516 scaffold_21 - intron_skips_exon 3126012-3126710 asmbl_27513 // Retained and Spliced Intron # retained_intron 3726877-3726965 (orient:-) max_ev_support = 1 # spliced_intron 3726877-3726965 (orient:-) max_ev_support = 2 scaffold_21 - intron 3726877-3726965 asmbl_27527,asmbl_27528,asmbl_27530 scaffold_21 - retained_intron 3726877-3726965 asmbl_27532 // Retained and Spliced Intron # retained_intron 3824094-3824282 (orient:-) max_ev_support = 2 # spliced_intron 3824094-3824282 (orient:-) max_ev_support = 2 scaffold_21 - intron 3824094-3824282 asmbl_27548 scaffold_21 - retained_intron 3824094-3824282 asmbl_27546,asmbl_27551,asmbl_27552 // Exon Skipping and Retention # skipped_exon 3824094-3826309 (orient:-) max_ev_support = 2 # retained_exon 3824283-3824342 (orient:-) max_ev_support = 2 scaffold_21 - retained_exons 3824283-3824342 asmbl_27548 scaffold_21 - intron_skips_exon 3824094-3826309 asmbl_27547,asmbl_27550 // Retained and Spliced Intron # retained_intron 4649422-4649538 (orient:-) max_ev_support = 1 # spliced_intron 4649422-4649538 (orient:-) max_ev_support = 2 scaffold_21 - intron 4649422-4649538 asmbl_27576 scaffold_21 - retained_intron 4649422-4649538 asmbl_27577 // Exon Skipping and Retention # skipped_exon 4662859-4664245 (orient:-) max_ev_support = 1 # retained_exon 4663693-4663832 (orient:-) max_ev_support = 1 scaffold_21 - retained_exons 4663693-4663832 asmbl_27581 scaffold_21 - intron_skips_exon 4662859-4664245 asmbl_27582 // Exon Skipping and Retention # skipped_exon 4904191-4904476 (orient:-) max_ev_support = 1 # retained_exon 4904318-4904378 (orient:-) max_ev_support = 1 scaffold_21 - retained_exons 4904318-4904378 asmbl_27599 scaffold_21 - intron_skips_exon 4904191-4904476 asmbl_27598 // Retained and Spliced Intron # retained_intron 4967429-4967605 (orient:-) max_ev_support = 1 # spliced_intron 4967429-4967605 (orient:-) max_ev_support = 2 scaffold_21 - intron 4967429-4967605 asmbl_27602 scaffold_21 - retained_intron 4967429-4967605 asmbl_27603 // Retained and Spliced Intron # retained_intron 5110399-5110504 (orient:-) max_ev_support = 1 # spliced_intron 5110399-5110504 (orient:-) max_ev_support = 2 scaffold_21 - intron 5110399-5110504 asmbl_27605 scaffold_21 - retained_intron 5110399-5110504 asmbl_27606 // Retained and Spliced Intron # retained_intron 5110609-5110692 (orient:-) max_ev_support = 1 # spliced_intron 5110609-5110692 (orient:-) max_ev_support = 2 scaffold_21 - intron 5110609-5110692 asmbl_27605 scaffold_21 - retained_intron 5110609-5110692 asmbl_27606 // Retained and Spliced Intron # retained_intron 5138274-5138792 (orient:-) max_ev_support = 1 # spliced_intron 5138274-5138792 (orient:-) max_ev_support = 1 scaffold_21 - intron 5138274-5138792 asmbl_27612 scaffold_21 - retained_intron 5138274-5138792 asmbl_27610 // Retained and Spliced Intron # retained_intron 5153424-5153601 (orient:-) max_ev_support = 2 # spliced_intron 5153424-5153601 (orient:-) max_ev_support = 1 scaffold_21 - intron 5153424-5153601 asmbl_27618 scaffold_21 - retained_intron 5153424-5153601 asmbl_27617 // Retained and Spliced Intron # retained_intron 5170097-5170194 (orient:-) max_ev_support = 1 # spliced_intron 5170097-5170194 (orient:-) max_ev_support = 2 scaffold_21 - intron 5170097-5170194 asmbl_27621,asmbl_27625,asmbl_27626,asmbl_27627 scaffold_21 - retained_intron 5170097-5170194 asmbl_27623,asmbl_27624 // Retained and Spliced Intron # retained_intron 5169771-5169934 (orient:-) max_ev_support = 1 # spliced_intron 5169771-5169934 (orient:-) max_ev_support = 2 scaffold_21 - intron 5169771-5169934 asmbl_27621,asmbl_27623,asmbl_27626,asmbl_27627 scaffold_21 - retained_intron 5169771-5169934 asmbl_27624,asmbl_27625 // Retained and Spliced Intron # retained_intron 5170787-5170985 (orient:-) max_ev_support = 1 # spliced_intron 5170787-5170985 (orient:-) max_ev_support = 2 scaffold_21 - intron 5170787-5170985 asmbl_27621,asmbl_27623,asmbl_27624,asmbl_27625,asmbl_27627 scaffold_21 - retained_intron 5170787-5170985 asmbl_27626 // Retained and Spliced Intron # retained_intron 5171404-5171760 (orient:-) max_ev_support = 1 # spliced_intron 5171404-5171760 (orient:-) max_ev_support = 2 scaffold_21 - intron 5171404-5171760 asmbl_27621,asmbl_27623,asmbl_27624,asmbl_27625,asmbl_27627 scaffold_21 - retained_intron 5171404-5171760 asmbl_27626 // Retained and Spliced Intron # retained_intron 5279754-5280675 (orient:-) max_ev_support = 2 # spliced_intron 5279754-5280675 (orient:-) max_ev_support = 2 scaffold_21 - intron 5279754-5280675 asmbl_27644 scaffold_21 - retained_intron 5279754-5280675 asmbl_27638,asmbl_27639,asmbl_27646 // Exon Skipping and Retention # skipped_exon 5279754-5281553 (orient:-) max_ev_support = 2 # retained_exon 5280676-5280791 (orient:-) max_ev_support = 2 scaffold_21 - retained_exons 5280676-5280791 asmbl_27644 scaffold_21 - intron_skips_exon 5279754-5281553 asmbl_27645,asmbl_27647 // Retained and Spliced Intron # retained_intron 5468667-5468783 (orient:-) max_ev_support = 2 # spliced_intron 5468667-5468783 (orient:-) max_ev_support = 2 scaffold_21 - intron 5468667-5468783 asmbl_27657 scaffold_21 - retained_intron 5468667-5468783 asmbl_27656 // Exon Skipping and Retention # skipped_exon 5519378-5520424 (orient:-) max_ev_support = 1 # retained_exon 5519925-5520018 (orient:-) max_ev_support = 1 scaffold_21 - retained_exons 5519925-5520018 asmbl_27662 scaffold_21 - intron_skips_exon 5519378-5520424 asmbl_27663 // Exon Skipping and Retention # skipped_exon 5518491-5519924 (orient:-) max_ev_support = 1 # retained_exon 5519284-5519377 (orient:-) max_ev_support = 1 scaffold_21 - retained_exons 5519284-5519377 asmbl_27663 scaffold_21 - intron_skips_exon 5518491-5519924 asmbl_27662 // Retained and Spliced Intron # retained_intron 5536369-5536490 (orient:-) max_ev_support = 2 # spliced_intron 5536369-5536490 (orient:-) max_ev_support = 1 scaffold_21 - intron 5536369-5536490 asmbl_27674,asmbl_27675,asmbl_27676 scaffold_21 - retained_intron 5536369-5536490 asmbl_27672,asmbl_27673 // Retained and Spliced Intron # retained_intron 5536672-5536770 (orient:-) max_ev_support = 2 # spliced_intron 5536672-5536770 (orient:-) max_ev_support = 1 scaffold_21 - intron 5536672-5536770 asmbl_27674,asmbl_27675,asmbl_27676 scaffold_21 - retained_intron 5536672-5536770 asmbl_27672,asmbl_27673 // Retained and Spliced Intron # retained_intron 5536873-5536964 (orient:-) max_ev_support = 2 # spliced_intron 5536873-5536964 (orient:-) max_ev_support = 2 scaffold_21 - intron 5536873-5536964 asmbl_27673,asmbl_27674,asmbl_27675,asmbl_27676 scaffold_21 - retained_intron 5536873-5536964 asmbl_27672 // Retained and Spliced Intron # retained_intron 5537163-5537307 (orient:-) max_ev_support = 2 # spliced_intron 5537163-5537307 (orient:-) max_ev_support = 1 scaffold_21 - intron 5537163-5537307 asmbl_27676 scaffold_21 - retained_intron 5537163-5537307 asmbl_27673,asmbl_27674,asmbl_27675 // Retained and Spliced Intron # retained_intron 5537513-5537636 (orient:-) max_ev_support = 2 # spliced_intron 5537513-5537636 (orient:-) max_ev_support = 1 scaffold_21 - intron 5537513-5537636 asmbl_27675,asmbl_27676 scaffold_21 - retained_intron 5537513-5537636 asmbl_27673,asmbl_27674 // Retained and Spliced Intron # retained_intron 5537847-5538423 (orient:-) max_ev_support = 2 # spliced_intron 5537847-5538423 (orient:-) max_ev_support = 1 scaffold_21 - intron 5537847-5538423 asmbl_27675,asmbl_27676 scaffold_21 - retained_intron 5537847-5538423 asmbl_27673,asmbl_27674 // Retained and Spliced Intron # retained_intron 5594441-5594553 (orient:-) max_ev_support = 2 # spliced_intron 5594441-5594553 (orient:-) max_ev_support = 2 scaffold_21 - intron 5594441-5594553 asmbl_27677 scaffold_21 - retained_intron 5594441-5594553 asmbl_27678 // Retained and Spliced Intron # retained_intron 5594719-5594820 (orient:-) max_ev_support = 2 # spliced_intron 5594719-5594820 (orient:-) max_ev_support = 2 scaffold_21 - intron 5594719-5594820 asmbl_27677 scaffold_21 - retained_intron 5594719-5594820 asmbl_27678 // Retained and Spliced Intron # retained_intron 5598203-5598331 (orient:-) max_ev_support = 2 # spliced_intron 5598203-5598331 (orient:-) max_ev_support = 2 scaffold_21 - intron 5598203-5598331 asmbl_27679,asmbl_27680 scaffold_21 - retained_intron 5598203-5598331 asmbl_27681 // Exon Skipping and Retention # skipped_exon 5773985-5776476 (orient:-) max_ev_support = 2 # retained_exon 5774120-5774824 (orient:-) max_ev_support = 2 scaffold_21 - retained_exons 5774120-5774263,5774666-5774824 asmbl_27692 scaffold_21 - intron_skips_exon 5773985-5776476 asmbl_27691,asmbl_27694,asmbl_27695 // Exon Skipping and Retention # skipped_exon 5774264-5776476 (orient:-) max_ev_support = 1 # retained_exon 5774666-5774824 (orient:-) max_ev_support = 2 scaffold_21 - retained_exons 5774666-5774824 asmbl_27692 scaffold_21 - intron_skips_exon 5774264-5776476 asmbl_27697 // Retained and Spliced Intron # retained_intron 5770329-5771473 (orient:-) max_ev_support = 1 # spliced_intron 5770329-5771473 (orient:-) max_ev_support = 2 scaffold_21 - intron 5770329-5771473 asmbl_27691,asmbl_27692,asmbl_27695,asmbl_27696,asmbl_27697 scaffold_21 - retained_intron 5770329-5771473 asmbl_27694 // Exon Skipping and Retention # skipped_exon 5773985-5776476 (orient:-) max_ev_support = 2 # retained_exon 5774120-5774263 (orient:-) max_ev_support = 1 scaffold_21 - retained_exons 5774120-5774263 asmbl_27697 scaffold_21 - intron_skips_exon 5773985-5776476 asmbl_27691,asmbl_27694,asmbl_27695 // Retained and Spliced Intron # retained_intron 5979198-5979219 (orient:-) max_ev_support = 1 # spliced_intron 5979198-5979219 (orient:-) max_ev_support = 1 scaffold_21 - intron 5979198-5979219 asmbl_27712 scaffold_21 - retained_intron 5979198-5979219 asmbl_27713,asmbl_27714 // Retained and Spliced Intron # retained_intron 5980259-5980363 (orient:-) max_ev_support = 1 # spliced_intron 5980259-5980363 (orient:-) max_ev_support = 1 scaffold_21 - intron 5980259-5980363 asmbl_27712,asmbl_27714 scaffold_21 - retained_intron 5980259-5980363 asmbl_27713 // Retained and Spliced Intron # retained_intron 7008589-7008736 (orient:-) max_ev_support = 1 # spliced_intron 7008589-7008736 (orient:-) max_ev_support = 1 scaffold_21 - intron 7008589-7008736 asmbl_27774 scaffold_21 - retained_intron 7008589-7008736 asmbl_27773 // Retained and Spliced Intron # retained_intron 7008589-7008751 (orient:-) max_ev_support = 1 # spliced_intron 7008589-7008751 (orient:-) max_ev_support = 2 scaffold_21 - intron 7008589-7008751 asmbl_27772,asmbl_27775,asmbl_27776,asmbl_27777,asmbl_27778 scaffold_21 - retained_intron 7008589-7008751 asmbl_27773 // Retained and Spliced Intron # retained_intron 7010245-7010833 (orient:-) max_ev_support = 1 # spliced_intron 7010245-7010833 (orient:-) max_ev_support = 2 scaffold_21 - intron 7010245-7010833 asmbl_27772,asmbl_27773,asmbl_27774 scaffold_21 - retained_intron 7010245-7010833 asmbl_27775,asmbl_27778 // Retained and Spliced Intron # retained_intron 7009179-7009301 (orient:-) max_ev_support = 1 # spliced_intron 7009179-7009301 (orient:-) max_ev_support = 2 scaffold_21 - intron 7009179-7009301 asmbl_27772,asmbl_27773,asmbl_27774,asmbl_27775,asmbl_27777,asmbl_27778 scaffold_21 - retained_intron 7009179-7009301 asmbl_27776 // Retained and Spliced Intron # retained_intron 7009393-7009561 (orient:-) max_ev_support = 1 # spliced_intron 7009393-7009561 (orient:-) max_ev_support = 2 scaffold_21 - intron 7009393-7009561 asmbl_27772,asmbl_27773,asmbl_27774,asmbl_27775,asmbl_27778 scaffold_21 - retained_intron 7009393-7009561 asmbl_27776,asmbl_27777 // Retained and Spliced Intron # retained_intron 7009648-7009840 (orient:-) max_ev_support = 1 # spliced_intron 7009648-7009840 (orient:-) max_ev_support = 2 scaffold_21 - intron 7009648-7009840 asmbl_27772,asmbl_27773,asmbl_27774,asmbl_27775 scaffold_21 - retained_intron 7009648-7009840 asmbl_27776,asmbl_27777,asmbl_27778 // Retained and Spliced Intron # retained_intron 7009972-7010079 (orient:-) max_ev_support = 1 # spliced_intron 7009972-7010079 (orient:-) max_ev_support = 2 scaffold_21 - intron 7009972-7010079 asmbl_27772,asmbl_27773,asmbl_27774,asmbl_27775 scaffold_21 - retained_intron 7009972-7010079 asmbl_27778 // Retained and Spliced Intron # retained_intron 7286601-7286692 (orient:-) max_ev_support = 1 # spliced_intron 7286601-7286692 (orient:-) max_ev_support = 3 scaffold_21 - intron 7286601-7286692 asmbl_27789,asmbl_27790 scaffold_21 - retained_intron 7286601-7286692 asmbl_27791 // Retained and Spliced Intron # retained_intron 7327012-7327159 (orient:-) max_ev_support = 1 # spliced_intron 7327012-7327159 (orient:-) max_ev_support = 2 scaffold_21 - intron 7327012-7327159 asmbl_27796 scaffold_21 - retained_intron 7327012-7327159 asmbl_27797 // Retained and Spliced Intron # retained_intron 7367840-7367962 (orient:-) max_ev_support = 2 # spliced_intron 7367840-7367962 (orient:-) max_ev_support = 2 scaffold_21 - intron 7367840-7367962 asmbl_27800 scaffold_21 - retained_intron 7367840-7367962 asmbl_27801,asmbl_27802,asmbl_27803 // Retained and Spliced Intron # retained_intron 7367393-7367476 (orient:-) max_ev_support = 1 # spliced_intron 7367393-7367476 (orient:-) max_ev_support = 2 scaffold_21 - intron 7367393-7367476 asmbl_27800 scaffold_21 - retained_intron 7367393-7367476 asmbl_27802,asmbl_27803 // Retained and Spliced Intron # retained_intron 7367729-7367814 (orient:-) max_ev_support = 1 # spliced_intron 7367729-7367814 (orient:-) max_ev_support = 2 scaffold_21 - intron 7367729-7367814 asmbl_27800,asmbl_27801 scaffold_21 - retained_intron 7367729-7367814 asmbl_27802,asmbl_27803 // Retained and Spliced Intron # retained_intron 7367552-7367674 (orient:-) max_ev_support = 1 # spliced_intron 7367552-7367674 (orient:-) max_ev_support = 2 scaffold_21 - intron 7367552-7367674 asmbl_27800,asmbl_27802 scaffold_21 - retained_intron 7367552-7367674 asmbl_27803 // Retained and Spliced Intron # retained_intron 7426114-7426200 (orient:-) max_ev_support = 2 # spliced_intron 7426114-7426200 (orient:-) max_ev_support = 1 scaffold_21 - intron 7426114-7426200 asmbl_27810,asmbl_27812 scaffold_21 - retained_intron 7426114-7426200 asmbl_27807,asmbl_27808,asmbl_27809,asmbl_27811 // Retained and Spliced Intron # retained_intron 7424823-7425004 (orient:-) max_ev_support = 1 # spliced_intron 7424823-7425004 (orient:-) max_ev_support = 2 scaffold_21 - intron 7424823-7425004 asmbl_27807,asmbl_27809,asmbl_27810,asmbl_27811 scaffold_21 - retained_intron 7424823-7425004 asmbl_27808 // Retained and Spliced Intron # retained_intron 7421674-7421760 (orient:-) max_ev_support = 1 # spliced_intron 7421674-7421760 (orient:-) max_ev_support = 2 scaffold_21 - intron 7421674-7421760 asmbl_27807,asmbl_27808,asmbl_27810,asmbl_27811 scaffold_21 - retained_intron 7421674-7421760 asmbl_27809 // Retained and Spliced Intron # retained_intron 7422031-7422123 (orient:-) max_ev_support = 1 # spliced_intron 7422031-7422123 (orient:-) max_ev_support = 2 scaffold_21 - intron 7422031-7422123 asmbl_27807,asmbl_27808,asmbl_27810,asmbl_27811 scaffold_21 - retained_intron 7422031-7422123 asmbl_27809 // Retained and Spliced Intron # retained_intron 7422211-7422334 (orient:-) max_ev_support = 1 # spliced_intron 7422211-7422334 (orient:-) max_ev_support = 2 scaffold_21 - intron 7422211-7422334 asmbl_27807,asmbl_27808,asmbl_27810,asmbl_27811 scaffold_21 - retained_intron 7422211-7422334 asmbl_27809 // Retained and Spliced Intron # retained_intron 7420548-7420652 (orient:-) max_ev_support = 1 # spliced_intron 7420548-7420652 (orient:-) max_ev_support = 2 scaffold_21 - intron 7420548-7420652 asmbl_27807,asmbl_27808,asmbl_27809,asmbl_27810 scaffold_21 - retained_intron 7420548-7420652 asmbl_27811 // Retained and Spliced Intron # retained_intron 7495452-7495669 (orient:-) max_ev_support = 1 # spliced_intron 7495452-7495669 (orient:-) max_ev_support = 2 scaffold_21 - intron 7495452-7495669 asmbl_27825,asmbl_27828 scaffold_21 - retained_intron 7495452-7495669 asmbl_27827 // Retained and Spliced Intron # retained_intron 7502207-7502569 (orient:-) max_ev_support = 2 # spliced_intron 7502207-7502569 (orient:-) max_ev_support = 2 scaffold_21 - intron 7502207-7502569 asmbl_27830,asmbl_27831,asmbl_27833 scaffold_21 - retained_intron 7502207-7502569 asmbl_27829,asmbl_27832 // Retained and Spliced Intron # retained_intron 7507874-7507982 (orient:-) max_ev_support = 2 # spliced_intron 7507874-7507982 (orient:-) max_ev_support = 2 scaffold_21 - intron 7507874-7507982 asmbl_27835,asmbl_27836 scaffold_21 - retained_intron 7507874-7507982 asmbl_27834 // Retained and Spliced Intron # retained_intron 7508102-7508305 (orient:-) max_ev_support = 2 # spliced_intron 7508102-7508305 (orient:-) max_ev_support = 2 scaffold_21 - intron 7508102-7508305 asmbl_27835 scaffold_21 - retained_intron 7508102-7508305 asmbl_27834,asmbl_27836 // Retained and Spliced Intron # retained_intron 7508385-7508701 (orient:-) max_ev_support = 1 # spliced_intron 7508385-7508701 (orient:-) max_ev_support = 2 scaffold_21 - intron 7508385-7508701 asmbl_27835 scaffold_21 - retained_intron 7508385-7508701 asmbl_27836 // Exon Skipping and Retention # skipped_exon 7811690-7812846 (orient:-) max_ev_support = 1 # retained_exon 7812103-7812165 (orient:-) max_ev_support = 1 scaffold_21 - retained_exons 7812103-7812165 asmbl_27856 scaffold_21 - intron_skips_exon 7811690-7812846 asmbl_27855 // Retained and Spliced Intron # retained_intron 7825384-7825604 (orient:-) max_ev_support = 1 # spliced_intron 7825384-7825604 (orient:-) max_ev_support = 2 scaffold_21 - intron 7825384-7825604 asmbl_27860,asmbl_27862 scaffold_21 - retained_intron 7825384-7825604 asmbl_27861 // Retained and Spliced Intron # retained_intron 7914216-7914320 (orient:-) max_ev_support = 2 # spliced_intron 7914216-7914320 (orient:-) max_ev_support = 2 scaffold_21 - intron 7914216-7914320 asmbl_27865 scaffold_21 - retained_intron 7914216-7914320 asmbl_27867 // Exon Skipping and Retention # skipped_exon 7937048-7937954 (orient:-) max_ev_support = 1 # retained_exon 7937551-7937647 (orient:-) max_ev_support = 3 scaffold_21 - retained_exons 7937551-7937647 asmbl_27869 scaffold_21 - intron_skips_exon 7937048-7937954 asmbl_27872 // Retained and Spliced Intron # retained_intron 8000621-8001304 (orient:-) max_ev_support = 2 # spliced_intron 8000621-8001304 (orient:-) max_ev_support = 2 scaffold_21 - intron 8000621-8001304 asmbl_27882 scaffold_21 - retained_intron 8000621-8001304 asmbl_27880 // Retained and Spliced Intron # retained_intron 7999512-7999684 (orient:-) max_ev_support = 1 # spliced_intron 7999512-7999684 (orient:-) max_ev_support = 2 scaffold_21 - intron 7999512-7999684 asmbl_27879,asmbl_27880,asmbl_27881,asmbl_27882 scaffold_21 - retained_intron 7999512-7999684 asmbl_27885 // Retained and Spliced Intron # retained_intron 8086347-8086431 (orient:-) max_ev_support = 2 # spliced_intron 8086347-8086431 (orient:-) max_ev_support = 2 scaffold_21 - intron 8086347-8086431 asmbl_27889 scaffold_21 - retained_intron 8086347-8086431 asmbl_27888 // Retained and Spliced Intron # retained_intron 8129161-8129599 (orient:-) max_ev_support = 3 # spliced_intron 8129161-8129599 (orient:-) max_ev_support = 1 scaffold_21 - intron 8129161-8129599 asmbl_27893,asmbl_27894 scaffold_21 - retained_intron 8129161-8129599 asmbl_27890 // Retained and Spliced Intron # retained_intron 8129161-8131427 (orient:-) max_ev_support = 7 # spliced_intron 8129161-8131427 (orient:-) max_ev_support = 2 scaffold_21 - intron 8129161-8131427 asmbl_27891,asmbl_27892,asmbl_27895 scaffold_21 - retained_intron 8129161-8131427 asmbl_27890 // Exon Skipping and Retention # skipped_exon 8129636-8132125 (orient:-) max_ev_support = 1 # retained_exon 8131428-8131454 (orient:-) max_ev_support = 2 scaffold_21 - retained_exons 8131428-8131454 asmbl_27891,asmbl_27892,asmbl_27895 scaffold_21 - intron_skips_exon 8129636-8132125 asmbl_27894 // Exon Skipping and Retention # skipped_exon 8129161-8131427 (orient:-) max_ev_support = 2 # retained_exon 8129600-8129635 (orient:-) max_ev_support = 1 scaffold_21 - retained_exons 8129600-8129635 asmbl_27894 scaffold_21 - intron_skips_exon 8129161-8131427 asmbl_27891,asmbl_27892,asmbl_27895 // Retained and Spliced Intron # retained_intron 8295961-8296045 (orient:-) max_ev_support = 2 # spliced_intron 8295961-8296045 (orient:-) max_ev_support = 2 scaffold_21 - intron 8295961-8296045 asmbl_27918 scaffold_21 - retained_intron 8295961-8296045 asmbl_27919 // Exon Skipping and Retention # skipped_exon 8538516-8539657 (orient:-) max_ev_support = 1 # retained_exon 8538971-8539090 (orient:-) max_ev_support = 4 scaffold_21 - retained_exons 8538971-8539090 asmbl_27929,asmbl_27930,asmbl_27931 scaffold_21 - intron_skips_exon 8538516-8539657 asmbl_27932 // Exon Skipping and Retention # skipped_exon 8971393-8974150 (orient:-) max_ev_support = 2 # retained_exon 8973582-8973638 (orient:-) max_ev_support = 2 scaffold_21 - retained_exons 8973582-8973638 asmbl_27946,asmbl_27947 scaffold_21 - intron_skips_exon 8971393-8974150 asmbl_27945,asmbl_27948 // Exon Skipping and Retention # skipped_exon 9706312-9707776 (orient:-) max_ev_support = 1 # retained_exon 9707077-9707192 (orient:-) max_ev_support = 1 scaffold_21 - retained_exons 9707077-9707192 asmbl_27961 scaffold_21 - intron_skips_exon 9706312-9707776 asmbl_27962 // Exon Skipping and Retention # skipped_exon 9705783-9707076 (orient:-) max_ev_support = 1 # retained_exon 9706196-9706311 (orient:-) max_ev_support = 1 scaffold_21 - retained_exons 9706196-9706311 asmbl_27962 scaffold_21 - intron_skips_exon 9705783-9707076 asmbl_27961 // Retained and Spliced Intron # retained_intron 9866643-9866822 (orient:-) max_ev_support = 1 # spliced_intron 9866643-9866822 (orient:-) max_ev_support = 1 scaffold_21 - intron 9866643-9866822 asmbl_27977 scaffold_21 - retained_intron 9866643-9866822 asmbl_27978 // Retained and Spliced Intron # retained_intron 9925390-9925585 (orient:-) max_ev_support = 2 # spliced_intron 9925390-9925585 (orient:-) max_ev_support = 1 scaffold_21 - intron 9925390-9925585 asmbl_27992 scaffold_21 - retained_intron 9925390-9925585 asmbl_27988 // Exon Skipping and Retention # skipped_exon 10004467-10005327 (orient:-) max_ev_support = 2 # retained_exon 10004994-10005017 (orient:-) max_ev_support = 2 scaffold_21 - retained_exons 10004994-10005017 asmbl_27999 scaffold_21 - intron_skips_exon 10004467-10005327 asmbl_28000 // Exon Skipping and Retention # skipped_exon 10250005-10251788 (orient:-) max_ev_support = 3 # retained_exon 10251262-10251308 (orient:-) max_ev_support = 3 scaffold_21 - retained_exons 10251262-10251308 asmbl_28014 scaffold_21 - intron_skips_exon 10250005-10251788 asmbl_28015 // Retained and Spliced Intron # retained_intron 10309452-10309508 (orient:-) max_ev_support = 2 # spliced_intron 10309452-10309508 (orient:-) max_ev_support = 1 scaffold_21 - intron 10309452-10309508 asmbl_28034 scaffold_21 - retained_intron 10309452-10309508 asmbl_28033 // Exon Skipping and Retention # skipped_exon 10329322-10330565 (orient:-) max_ev_support = 1 # retained_exon 10329938-10330394 (orient:-) max_ev_support = 1 scaffold_21 - retained_exons 10329938-10330045,10330316-10330394 asmbl_28037 scaffold_21 - intron_skips_exon 10329322-10330565 asmbl_28036 // Retained and Spliced Intron # retained_intron 10497854-10497950 (orient:-) max_ev_support = 2 # spliced_intron 10497854-10497950 (orient:-) max_ev_support = 3 scaffold_21 - intron 10497854-10497950 asmbl_28047,asmbl_28050 scaffold_21 - retained_intron 10497854-10497950 asmbl_28048,asmbl_28049 // Retained and Spliced Intron # retained_intron 10497987-10498087 (orient:-) max_ev_support = 1 # spliced_intron 10497987-10498087 (orient:-) max_ev_support = 3 scaffold_21 - intron 10497987-10498087 asmbl_28047,asmbl_28048,asmbl_28050 scaffold_21 - retained_intron 10497987-10498087 asmbl_28049 // Retained and Spliced Intron # retained_intron 10498503-10498605 (orient:-) max_ev_support = 1 # spliced_intron 10498503-10498605 (orient:-) max_ev_support = 3 scaffold_21 - intron 10498503-10498605 asmbl_28047,asmbl_28048,asmbl_28051 scaffold_21 - retained_intron 10498503-10498605 asmbl_28050 // Retained and Spliced Intron # retained_intron 10848260-10848466 (orient:-) max_ev_support = 2 # spliced_intron 10848260-10848466 (orient:-) max_ev_support = 2 scaffold_21 - intron 10848260-10848466 asmbl_28078 scaffold_21 - retained_intron 10848260-10848466 asmbl_28077 // Retained and Spliced Intron # retained_intron 11103380-11103507 (orient:-) max_ev_support = 4 # spliced_intron 11103380-11103507 (orient:-) max_ev_support = 1 scaffold_21 - intron 11103380-11103507 asmbl_28092 scaffold_21 - retained_intron 11103380-11103507 asmbl_28091 // Retained and Spliced Intron # retained_intron 11228603-11228728 (orient:-) max_ev_support = 2 # spliced_intron 11228603-11228728 (orient:-) max_ev_support = 1 scaffold_21 - intron 11228603-11228728 asmbl_28097 scaffold_21 - retained_intron 11228603-11228728 asmbl_28096 // Exon Skipping and Retention # skipped_exon 11272094-11272979 (orient:-) max_ev_support = 2 # retained_exon 11272769-11272852 (orient:-) max_ev_support = 2 scaffold_21 - retained_exons 11272769-11272852 asmbl_28113,asmbl_28114,asmbl_28115,asmbl_28116 scaffold_21 - intron_skips_exon 11272094-11272979 asmbl_28112 // Retained and Spliced Intron # retained_intron 11346223-11346264 (orient:-) max_ev_support = 1 # spliced_intron 11346223-11346264 (orient:-) max_ev_support = 1 scaffold_21 - intron 11346223-11346264 asmbl_28124 scaffold_21 - retained_intron 11346223-11346264 asmbl_28122,asmbl_28123 // Retained and Spliced Intron # retained_intron 11346303-11346361 (orient:-) max_ev_support = 1 # spliced_intron 11346303-11346361 (orient:-) max_ev_support = 1 scaffold_21 - intron 11346303-11346361 asmbl_28121,asmbl_28123,asmbl_28124 scaffold_21 - retained_intron 11346303-11346361 asmbl_28122 // Retained and Spliced Intron # retained_intron 11346118-11346201 (orient:-) max_ev_support = 1 # spliced_intron 11346118-11346201 (orient:-) max_ev_support = 1 scaffold_21 - intron 11346118-11346201 asmbl_28122,asmbl_28123 scaffold_21 - retained_intron 11346118-11346201 asmbl_28124 // Retained and Spliced Intron # retained_intron 11570695-11570754 (orient:-) max_ev_support = 1 # spliced_intron 11570695-11570754 (orient:-) max_ev_support = 1 scaffold_21 - intron 11570695-11570754 asmbl_28132 scaffold_21 - retained_intron 11570695-11570754 asmbl_28133 // Exon Skipping and Retention # skipped_exon 11670710-11672822 (orient:-) max_ev_support = 2 # retained_exon 11671525-11671560 (orient:-) max_ev_support = 1 scaffold_21 - retained_exons 11671525-11671560 asmbl_28139 scaffold_21 - intron_skips_exon 11670710-11672822 asmbl_28138 // Retained and Spliced Intron # retained_intron 11964407-11964472 (orient:-) max_ev_support = 2 # spliced_intron 11964407-11964472 (orient:-) max_ev_support = 1 scaffold_21 - intron 11964407-11964472 asmbl_28142 scaffold_21 - retained_intron 11964407-11964472 asmbl_28143 // Retained and Spliced Intron # retained_intron 473831-473938 (orient:+) max_ev_support = 1 # spliced_intron 473831-473938 (orient:+) max_ev_support = 2 scaffold_21 + intron 473831-473938 asmbl_28265,asmbl_28267 scaffold_21 + retained_intron 473831-473938 asmbl_28268 // Retained and Spliced Intron # retained_intron 524687-524895 (orient:+) max_ev_support = 2 # spliced_intron 524687-524895 (orient:+) max_ev_support = 3 scaffold_21 + intron 524687-524895 asmbl_28272 scaffold_21 + retained_intron 524687-524895 asmbl_28273 // Exon Skipping and Retention # skipped_exon 606869-609625 (orient:+) max_ev_support = 2 # retained_exon 608994-609074 (orient:+) max_ev_support = 2 scaffold_21 + retained_exons 608994-609074 asmbl_28280 scaffold_21 + intron_skips_exon 606869-609625 asmbl_28281 // Exon Skipping and Retention # skipped_exon 690867-692284 (orient:+) max_ev_support = 1 # retained_exon 691873-692016 (orient:+) max_ev_support = 2 scaffold_21 + retained_exons 691873-692016 asmbl_28284,asmbl_28282 scaffold_21 + intron_skips_exon 690867-692284 asmbl_28285 // Exon Skipping and Retention # skipped_exon 692017-694234 (orient:+) max_ev_support = 1 # retained_exon 693823-693966 (orient:+) max_ev_support = 1 scaffold_21 + retained_exons 693823-693966 asmbl_28283 scaffold_21 + intron_skips_exon 692017-694234 asmbl_28284 // Exon Skipping and Retention # skipped_exon 690867-693822 (orient:+) max_ev_support = 1 # retained_exon 691873-692016 (orient:+) max_ev_support = 2 scaffold_21 + retained_exons 691873-692016 asmbl_28284,asmbl_28282 scaffold_21 + intron_skips_exon 690867-693822 asmbl_28283 // Retained and Spliced Intron # retained_intron 730676-730999 (orient:+) max_ev_support = 3 # spliced_intron 730676-730999 (orient:+) max_ev_support = 1 scaffold_21 + intron 730676-730999 asmbl_28294 scaffold_21 + retained_intron 730676-730999 asmbl_28290 // Retained and Spliced Intron # retained_intron 730780-730999 (orient:+) max_ev_support = 1 # spliced_intron 730780-730999 (orient:+) max_ev_support = 1 scaffold_21 + intron 730780-730999 asmbl_28291 scaffold_21 + retained_intron 730780-730999 asmbl_28290 // Retained and Spliced Intron # retained_intron 730900-730999 (orient:+) max_ev_support = 1 # spliced_intron 730900-730999 (orient:+) max_ev_support = 3 scaffold_21 + intron 730900-730999 asmbl_28289 scaffold_21 + retained_intron 730900-730999 asmbl_28290 // Retained and Spliced Intron # retained_intron 731085-731446 (orient:+) max_ev_support = 3 # spliced_intron 731085-731446 (orient:+) max_ev_support = 3 scaffold_21 + intron 731085-731446 asmbl_28289,asmbl_28291,asmbl_28293,asmbl_28294 scaffold_21 + retained_intron 731085-731446 asmbl_28290 // Exon Skipping and Retention # skipped_exon 736707-738287 (orient:+) max_ev_support = 3 # retained_exon 737050-737193 (orient:+) max_ev_support = 2 scaffold_21 + retained_exons 737050-737193 asmbl_28296 scaffold_21 + intron_skips_exon 736707-738287 asmbl_28295 // Exon Skipping and Retention # skipped_exon 833405-835515 (orient:+) max_ev_support = 2 # retained_exon 834695-834853 (orient:+) max_ev_support = 2 scaffold_21 + retained_exons 834695-834853 asmbl_28309,asmbl_28313 scaffold_21 + intron_skips_exon 833405-835515 asmbl_28310,asmbl_28312 // Exon Skipping and Retention # skipped_exon 1075351-1076712 (orient:+) max_ev_support = 1 # retained_exon 1075691-1075770 (orient:+) max_ev_support = 2 scaffold_21 + retained_exons 1075691-1075770 asmbl_28325 scaffold_21 + intron_skips_exon 1075351-1076712 asmbl_28326 // Retained and Spliced Intron # retained_intron 1151006-1151165 (orient:+) max_ev_support = 2 # spliced_intron 1151006-1151165 (orient:+) max_ev_support = 3 scaffold_21 + intron 1151006-1151165 asmbl_28328 scaffold_21 + retained_intron 1151006-1151165 asmbl_28329 // Retained and Spliced Intron # retained_intron 1151006-1151179 (orient:+) max_ev_support = 2 # spliced_intron 1151006-1151179 (orient:+) max_ev_support = 1 scaffold_21 + intron 1151006-1151179 asmbl_28330 scaffold_21 + retained_intron 1151006-1151179 asmbl_28329 // Retained and Spliced Intron # retained_intron 1633782-1633907 (orient:+) max_ev_support = 2 # spliced_intron 1633782-1633907 (orient:+) max_ev_support = 2 scaffold_21 + intron 1633782-1633907 asmbl_28342 scaffold_21 + retained_intron 1633782-1633907 asmbl_28343 // Retained and Spliced Intron # retained_intron 1653679-1654377 (orient:+) max_ev_support = 2 # spliced_intron 1653679-1654377 (orient:+) max_ev_support = 3 scaffold_21 + intron 1653679-1654377 asmbl_28346,asmbl_28351 scaffold_21 + retained_intron 1653679-1654377 asmbl_28347,asmbl_28350 // Retained and Spliced Intron # retained_intron 1654469-1654866 (orient:+) max_ev_support = 2 # spliced_intron 1654469-1654866 (orient:+) max_ev_support = 3 scaffold_21 + intron 1654469-1654866 asmbl_28346,asmbl_28351 scaffold_21 + retained_intron 1654469-1654866 asmbl_28347,asmbl_28350 // Retained and Spliced Intron # retained_intron 1657024-1657137 (orient:+) max_ev_support = 2 # spliced_intron 1657024-1657137 (orient:+) max_ev_support = 3 scaffold_21 + intron 1657024-1657137 asmbl_28346,asmbl_28347,asmbl_28348,asmbl_28350,asmbl_28351 scaffold_21 + retained_intron 1657024-1657137 asmbl_28349,asmbl_28352 // Retained and Spliced Intron # retained_intron 1654934-1655150 (orient:+) max_ev_support = 1 # spliced_intron 1654934-1655150 (orient:+) max_ev_support = 3 scaffold_21 + intron 1654934-1655150 asmbl_28346,asmbl_28347,asmbl_28351 scaffold_21 + retained_intron 1654934-1655150 asmbl_28350 // Retained and Spliced Intron # retained_intron 1657218-1657472 (orient:+) max_ev_support = 1 # spliced_intron 1657218-1657472 (orient:+) max_ev_support = 3 scaffold_21 + intron 1657218-1657472 asmbl_28346,asmbl_28347,asmbl_28348,asmbl_28349,asmbl_28350 scaffold_21 + retained_intron 1657218-1657472 asmbl_28351,asmbl_28352 // Exon Skipping and Retention # skipped_exon 1679907-1680931 (orient:+) max_ev_support = 1 # retained_exon 1680688-1680761 (orient:+) max_ev_support = 3 scaffold_21 + retained_exons 1680688-1680761 asmbl_28353 scaffold_21 + intron_skips_exon 1679907-1680931 asmbl_28354 // Retained and Spliced Intron # retained_intron 1697777-1697954 (orient:+) max_ev_support = 1 # spliced_intron 1697777-1697954 (orient:+) max_ev_support = 2 scaffold_21 + intron 1697777-1697954 asmbl_28355,asmbl_28356,asmbl_28357 scaffold_21 + retained_intron 1697777-1697954 asmbl_28358 // Retained and Spliced Intron # retained_intron 2441436-2441601 (orient:+) max_ev_support = 2 # spliced_intron 2441436-2441601 (orient:+) max_ev_support = 1 scaffold_21 + intron 2441436-2441601 asmbl_28390 scaffold_21 + retained_intron 2441436-2441601 asmbl_28391 // Retained and Spliced Intron # retained_intron 2497047-2497201 (orient:+) max_ev_support = 3 # spliced_intron 2497047-2497201 (orient:+) max_ev_support = 2 scaffold_21 + intron 2497047-2497201 asmbl_28395,asmbl_28398 scaffold_21 + retained_intron 2497047-2497201 asmbl_28396,asmbl_28397 // Retained and Spliced Intron # retained_intron 2516716-2516804 (orient:+) max_ev_support = 2 # spliced_intron 2516716-2516804 (orient:+) max_ev_support = 1 scaffold_21 + intron 2516716-2516804 asmbl_28400,asmbl_28401 scaffold_21 + retained_intron 2516716-2516804 asmbl_28399 // Exon Skipping and Retention # skipped_exon 2950671-2951902 (orient:+) max_ev_support = 2 # retained_exon 2951596-2951683 (orient:+) max_ev_support = 2 scaffold_21 + retained_exons 2951596-2951683 asmbl_28427 scaffold_21 + intron_skips_exon 2950671-2951902 asmbl_28428,asmbl_28430 // Exon Skipping and Retention # skipped_exon 2952933-2953416 (orient:+) max_ev_support = 2 # retained_exon 2953085-2953148 (orient:+) max_ev_support = 1 scaffold_21 + retained_exons 2953085-2953148 asmbl_28430 scaffold_21 + intron_skips_exon 2952933-2953416 asmbl_28428 // Retained and Spliced Intron # retained_intron 3015237-3015391 (orient:+) max_ev_support = 1 # spliced_intron 3015237-3015391 (orient:+) max_ev_support = 2 scaffold_21 + intron 3015237-3015391 asmbl_28434 scaffold_21 + retained_intron 3015237-3015391 asmbl_28436 // Retained and Spliced Intron # retained_intron 3015285-3015391 (orient:+) max_ev_support = 1 # spliced_intron 3015285-3015391 (orient:+) max_ev_support = 2 scaffold_21 + intron 3015285-3015391 asmbl_28433,asmbl_28435,asmbl_28437 scaffold_21 + retained_intron 3015285-3015391 asmbl_28436 // Retained and Spliced Intron # retained_intron 3120017-3120306 (orient:+) max_ev_support = 4 # spliced_intron 3120017-3120306 (orient:+) max_ev_support = 1 scaffold_21 + intron 3120017-3120306 asmbl_28446 scaffold_21 + retained_intron 3120017-3120306 asmbl_28445 // Exon Skipping and Retention # skipped_exon 3169154-3170344 (orient:+) max_ev_support = 1 # retained_exon 3169685-3169834 (orient:+) max_ev_support = 2 scaffold_21 + retained_exons 3169685-3169834 asmbl_28456,asmbl_28457,asmbl_28458,asmbl_28464,asmbl_28467,asmbl_28468,asmbl_28469,asmbl_28471 scaffold_21 + intron_skips_exon 3169154-3170344 asmbl_28466,asmbl_28470,asmbl_28472 // Exon Skipping and Retention # skipped_exon 3162883-3165288 (orient:+) max_ev_support = 2 # retained_exon 3163840-3164007 (orient:+) max_ev_support = 1 scaffold_21 + retained_exons 3163840-3164007 asmbl_28458,asmbl_28466,asmbl_28467,asmbl_28470,asmbl_28471 scaffold_21 + intron_skips_exon 3162883-3165288 asmbl_28456,asmbl_28457,asmbl_28464,asmbl_28468,asmbl_28469,asmbl_28472 // Retained and Spliced Intron # retained_intron 3175043-3175199 (orient:+) max_ev_support = 1 # spliced_intron 3175043-3175199 (orient:+) max_ev_support = 2 scaffold_21 + intron 3175043-3175199 asmbl_28456,asmbl_28457,asmbl_28458,asmbl_28460,asmbl_28464,asmbl_28466,asmbl_28467,asmbl_28468,asmbl_28469,asmbl_28470,asmbl_28471,asmbl_28472,asmbl_28473 scaffold_21 + retained_intron 3175043-3175199 asmbl_28461 // Retained and Spliced Intron # retained_intron 3189776-3190483 (orient:+) max_ev_support = 1 # spliced_intron 3189776-3190483 (orient:+) max_ev_support = 1 scaffold_21 + intron 3189776-3190483 asmbl_28477,asmbl_28478 scaffold_21 + retained_intron 3189776-3190483 asmbl_28476 // Retained and Spliced Intron # retained_intron 3192371-3192392 (orient:+) max_ev_support = 1 # spliced_intron 3192371-3192392 (orient:+) max_ev_support = 1 scaffold_21 + intron 3192371-3192392 asmbl_28478 scaffold_21 + retained_intron 3192371-3192392 asmbl_28476,asmbl_28477,asmbl_28479 // Exon Skipping and Retention # skipped_exon 4099856-4102411 (orient:+) max_ev_support = 1 # retained_exon 4100643-4101488 (orient:+) max_ev_support = 1 scaffold_21 + retained_exons 4100643-4101488 asmbl_28502 scaffold_21 + intron_skips_exon 4099856-4102411 asmbl_28501 // Retained and Spliced Intron # retained_intron 4101489-4102411 (orient:+) max_ev_support = 1 # spliced_intron 4101489-4102411 (orient:+) max_ev_support = 1 scaffold_21 + intron 4101489-4102411 asmbl_28502 scaffold_21 + retained_intron 4101489-4102411 asmbl_28503 // Retained and Spliced Intron # retained_intron 4099856-4100642 (orient:+) max_ev_support = 2 # spliced_intron 4099856-4100642 (orient:+) max_ev_support = 1 scaffold_21 + intron 4099856-4100642 asmbl_28502 scaffold_21 + retained_intron 4099856-4100642 asmbl_28505 // Retained and Spliced Intron # retained_intron 4944460-4944587 (orient:+) max_ev_support = 1 # spliced_intron 4944460-4944587 (orient:+) max_ev_support = 2 scaffold_21 + intron 4944460-4944587 asmbl_28538,asmbl_28542 scaffold_21 + retained_intron 4944460-4944587 asmbl_28541 // Retained and Spliced Intron # retained_intron 4948171-4948378 (orient:+) max_ev_support = 2 # spliced_intron 4948171-4948378 (orient:+) max_ev_support = 2 scaffold_21 + intron 4948171-4948378 asmbl_28543 scaffold_21 + retained_intron 4948171-4948378 asmbl_28544 // Retained and Spliced Intron # retained_intron 5183291-5183495 (orient:+) max_ev_support = 2 # spliced_intron 5183291-5183495 (orient:+) max_ev_support = 3 scaffold_21 + intron 5183291-5183495 asmbl_28557 scaffold_21 + retained_intron 5183291-5183495 asmbl_28558 // Retained and Spliced Intron # retained_intron 5549480-5549620 (orient:+) max_ev_support = 2 # spliced_intron 5549480-5549620 (orient:+) max_ev_support = 2 scaffold_21 + intron 5549480-5549620 asmbl_28576,asmbl_28577,asmbl_28579,asmbl_28580 scaffold_21 + retained_intron 5549480-5549620 asmbl_28578 // Retained and Spliced Intron # retained_intron 6129614-6129688 (orient:+) max_ev_support = 2 # spliced_intron 6129614-6129688 (orient:+) max_ev_support = 2 scaffold_21 + intron 6129614-6129688 asmbl_28617,asmbl_28619 scaffold_21 + retained_intron 6129614-6129688 asmbl_28618 // Retained and Spliced Intron # retained_intron 6190737-6191794 (orient:+) max_ev_support = 3 # spliced_intron 6190737-6191794 (orient:+) max_ev_support = 2 scaffold_21 + intron 6190737-6191794 asmbl_28621 scaffold_21 + retained_intron 6190737-6191794 asmbl_28620,asmbl_28622 // Retained and Spliced Intron # retained_intron 6191859-6192384 (orient:+) max_ev_support = 3 # spliced_intron 6191859-6192384 (orient:+) max_ev_support = 2 scaffold_21 + intron 6191859-6192384 asmbl_28621,asmbl_28622 scaffold_21 + retained_intron 6191859-6192384 asmbl_28620 // Exon Skipping and Retention # skipped_exon 6391077-6393407 (orient:+) max_ev_support = 2 # retained_exon 6392213-6392242 (orient:+) max_ev_support = 1 scaffold_21 + retained_exons 6392213-6392242 asmbl_28635,asmbl_28636 scaffold_21 + intron_skips_exon 6391077-6393407 asmbl_28632 // Retained and Spliced Intron # retained_intron 6448011-6448185 (orient:+) max_ev_support = 2 # spliced_intron 6448011-6448185 (orient:+) max_ev_support = 3 scaffold_21 + intron 6448011-6448185 asmbl_28645 scaffold_21 + retained_intron 6448011-6448185 asmbl_28646 // Retained and Spliced Intron # retained_intron 6490693-6490848 (orient:+) max_ev_support = 2 # spliced_intron 6490693-6490848 (orient:+) max_ev_support = 2 scaffold_21 + intron 6490693-6490848 asmbl_28650,asmbl_28651,asmbl_28653 scaffold_21 + retained_intron 6490693-6490848 asmbl_28652 // Exon Skipping and Retention # skipped_exon 6512144-6512971 (orient:+) max_ev_support = 1 # retained_exon 6512237-6512322 (orient:+) max_ev_support = 2 scaffold_21 + retained_exons 6512237-6512322 asmbl_28658 scaffold_21 + intron_skips_exon 6512144-6512971 asmbl_28661 // Retained and Spliced Intron # retained_intron 6617614-6617692 (orient:+) max_ev_support = 2 # spliced_intron 6617614-6617692 (orient:+) max_ev_support = 2 scaffold_21 + intron 6617614-6617692 asmbl_28673,asmbl_28674,asmbl_28675 scaffold_21 + retained_intron 6617614-6617692 asmbl_28672,asmbl_28678 // Retained and Spliced Intron # retained_intron 6617873-6617964 (orient:+) max_ev_support = 2 # spliced_intron 6617873-6617964 (orient:+) max_ev_support = 2 scaffold_21 + intron 6617873-6617964 asmbl_28673,asmbl_28674,asmbl_28675,asmbl_28678 scaffold_21 + retained_intron 6617873-6617964 asmbl_28672 // Retained and Spliced Intron # retained_intron 6620794-6620944 (orient:+) max_ev_support = 2 # spliced_intron 6620794-6620944 (orient:+) max_ev_support = 1 scaffold_21 + intron 6620794-6620944 asmbl_28679 scaffold_21 + retained_intron 6620794-6620944 asmbl_28672,asmbl_28677 // Retained and Spliced Intron # retained_intron 6616948-6617116 (orient:+) max_ev_support = 3 # spliced_intron 6616948-6617116 (orient:+) max_ev_support = 2 scaffold_21 + intron 6616948-6617116 asmbl_28674 scaffold_21 + retained_intron 6616948-6617116 asmbl_28673 // Retained and Spliced Intron # retained_intron 6618853-6618996 (orient:+) max_ev_support = 2 # spliced_intron 6618853-6618996 (orient:+) max_ev_support = 4 scaffold_21 + intron 6618853-6618996 asmbl_28672,asmbl_28673,asmbl_28674,asmbl_28678 scaffold_21 + retained_intron 6618853-6618996 asmbl_28675 // Exon Skipping and Retention # skipped_exon 6637284-6639368 (orient:+) max_ev_support = 1 # retained_exon 6638698-6638970 (orient:+) max_ev_support = 2 scaffold_21 + retained_exons 6638698-6638782,6638896-6638970 asmbl_28682 scaffold_21 + intron_skips_exon 6637284-6639368 asmbl_28683 // Retained and Spliced Intron # retained_intron 6817863-6818183 (orient:+) max_ev_support = 3 # spliced_intron 6817863-6818183 (orient:+) max_ev_support = 2 scaffold_21 + intron 6817863-6818183 asmbl_28702,asmbl_28703 scaffold_21 + retained_intron 6817863-6818183 asmbl_28701,asmbl_28704 // Retained and Spliced Intron # retained_intron 6818231-6818419 (orient:+) max_ev_support = 3 # spliced_intron 6818231-6818419 (orient:+) max_ev_support = 2 scaffold_21 + intron 6818231-6818419 asmbl_28702,asmbl_28703,asmbl_28704,asmbl_28705 scaffold_21 + retained_intron 6818231-6818419 asmbl_28701 // Retained and Spliced Intron # retained_intron 6818461-6818654 (orient:+) max_ev_support = 3 # spliced_intron 6818461-6818654 (orient:+) max_ev_support = 2 scaffold_21 + intron 6818461-6818654 asmbl_28702,asmbl_28704,asmbl_28705 scaffold_21 + retained_intron 6818461-6818654 asmbl_28701,asmbl_28703 // Retained and Spliced Intron # retained_intron 6818680-6818878 (orient:+) max_ev_support = 3 # spliced_intron 6818680-6818878 (orient:+) max_ev_support = 2 scaffold_21 + intron 6818680-6818878 asmbl_28702,asmbl_28704 scaffold_21 + retained_intron 6818680-6818878 asmbl_28701,asmbl_28703,asmbl_28705 // Exon Skipping and Retention # skipped_exon 7116647-7117325 (orient:+) max_ev_support = 1 # retained_exon 7117027-7117148 (orient:+) max_ev_support = 3 scaffold_21 + retained_exons 7117027-7117148 asmbl_28712 scaffold_21 + intron_skips_exon 7116647-7117325 asmbl_28713 // Retained and Spliced Intron # retained_intron 7600965-7601122 (orient:+) max_ev_support = 2 # spliced_intron 7600965-7601122 (orient:+) max_ev_support = 2 scaffold_21 + intron 7600965-7601122 asmbl_28753 scaffold_21 + retained_intron 7600965-7601122 asmbl_28755 // Retained and Spliced Intron # retained_intron 7600965-7601224 (orient:+) max_ev_support = 2 # spliced_intron 7600965-7601224 (orient:+) max_ev_support = 2 scaffold_21 + intron 7600965-7601224 asmbl_28754 scaffold_21 + retained_intron 7600965-7601224 asmbl_28755 // Exon Skipping and Retention # skipped_exon 7725997-7727810 (orient:+) max_ev_support = 1 # retained_exon 7727561-7727721 (orient:+) max_ev_support = 2 scaffold_21 + retained_exons 7727561-7727721 asmbl_28764 scaffold_21 + intron_skips_exon 7725997-7727810 asmbl_28765 // Exon Skipping and Retention # skipped_exon 7724644-7727560 (orient:+) max_ev_support = 2 # retained_exon 7725836-7725996 (orient:+) max_ev_support = 1 scaffold_21 + retained_exons 7725836-7725996 asmbl_28765 scaffold_21 + intron_skips_exon 7724644-7727560 asmbl_28764 // Retained and Spliced Intron # retained_intron 7928625-7928725 (orient:+) max_ev_support = 1 # spliced_intron 7928625-7928725 (orient:+) max_ev_support = 2 scaffold_21 + intron 7928625-7928725 asmbl_28772 scaffold_21 + retained_intron 7928625-7928725 asmbl_28773 // Retained and Spliced Intron # retained_intron 8004779-8005332 (orient:+) max_ev_support = 2 # spliced_intron 8004779-8005332 (orient:+) max_ev_support = 2 scaffold_21 + intron 8004779-8005332 asmbl_28776 scaffold_21 + retained_intron 8004779-8005332 asmbl_28775 // Retained and Spliced Intron # retained_intron 8008219-8008373 (orient:+) max_ev_support = 4 # spliced_intron 8008219-8008373 (orient:+) max_ev_support = 2 scaffold_21 + intron 8008219-8008373 asmbl_28775,asmbl_28776,asmbl_28780,asmbl_28781 scaffold_21 + retained_intron 8008219-8008373 asmbl_28777 // Retained and Spliced Intron # retained_intron 8008219-8008376 (orient:+) max_ev_support = 4 # spliced_intron 8008219-8008376 (orient:+) max_ev_support = 1 scaffold_21 + intron 8008219-8008376 asmbl_28778 scaffold_21 + retained_intron 8008219-8008376 asmbl_28777 // Exon Skipping and Retention # skipped_exon 8278443-8278631 (orient:+) max_ev_support = 1 # retained_exon 8278464-8278505 (orient:+) max_ev_support = 1 scaffold_21 + retained_exons 8278464-8278505 asmbl_28804 scaffold_21 + intron_skips_exon 8278443-8278631 asmbl_28803 // Retained and Spliced Intron # retained_intron 8278506-8278610 (orient:+) max_ev_support = 1 # spliced_intron 8278506-8278610 (orient:+) max_ev_support = 1 scaffold_21 + intron 8278506-8278610 asmbl_28804,asmbl_28806 scaffold_21 + retained_intron 8278506-8278610 asmbl_28807 // Retained and Spliced Intron # retained_intron 8278548-8278631 (orient:+) max_ev_support = 1 # spliced_intron 8278548-8278631 (orient:+) max_ev_support = 1 scaffold_21 + intron 8278548-8278631 asmbl_28805 scaffold_21 + retained_intron 8278548-8278631 asmbl_28807 // Retained and Spliced Intron # retained_intron 8529725-8529850 (orient:+) max_ev_support = 2 # spliced_intron 8529725-8529850 (orient:+) max_ev_support = 3 scaffold_21 + intron 8529725-8529850 asmbl_28816,asmbl_28821,asmbl_28822 scaffold_21 + retained_intron 8529725-8529850 asmbl_28817 // Retained and Spliced Intron # retained_intron 8529229-8529354 (orient:+) max_ev_support = 1 # spliced_intron 8529229-8529354 (orient:+) max_ev_support = 3 scaffold_21 + intron 8529229-8529354 asmbl_28816,asmbl_28817 scaffold_21 + retained_intron 8529229-8529354 asmbl_28821,asmbl_28822 // Retained and Spliced Intron # retained_intron 8920825-8921417 (orient:+) max_ev_support = 2 # spliced_intron 8920825-8921417 (orient:+) max_ev_support = 1 scaffold_21 + intron 8920825-8921417 asmbl_28839 scaffold_21 + retained_intron 8920825-8921417 asmbl_28837,asmbl_28838 // Retained and Spliced Intron # retained_intron 9780293-9781249 (orient:+) max_ev_support = 3 # spliced_intron 9780293-9781249 (orient:+) max_ev_support = 1 scaffold_21 + intron 9780293-9781249 asmbl_28845 scaffold_21 + retained_intron 9780293-9781249 asmbl_28844 // Exon Skipping and Retention # skipped_exon 9840273-9840911 (orient:+) max_ev_support = 1 # retained_exon 9840618-9840825 (orient:+) max_ev_support = 2 scaffold_21 + retained_exons 9840618-9840825 asmbl_28847 scaffold_21 + intron_skips_exon 9840273-9840911 asmbl_28848 // Retained and Spliced Intron # retained_intron 10098326-10098427 (orient:+) max_ev_support = 1 # spliced_intron 10098326-10098427 (orient:+) max_ev_support = 1 scaffold_21 + intron 10098326-10098427 asmbl_28857 scaffold_21 + retained_intron 10098326-10098427 asmbl_28856,asmbl_28858 // Retained and Spliced Intron # retained_intron 10097905-10097938 (orient:+) max_ev_support = 1 # spliced_intron 10097905-10097938 (orient:+) max_ev_support = 1 scaffold_21 + intron 10097905-10097938 asmbl_28856 scaffold_21 + retained_intron 10097905-10097938 asmbl_28857,asmbl_28858 // Retained and Spliced Intron # retained_intron 10120864-10120890 (orient:+) max_ev_support = 3 # spliced_intron 10120864-10120890 (orient:+) max_ev_support = 1 scaffold_21 + intron 10120864-10120890 asmbl_28864 scaffold_21 + retained_intron 10120864-10120890 asmbl_28859 // Retained and Spliced Intron # retained_intron 10469247-10469271 (orient:+) max_ev_support = 1 # spliced_intron 10469247-10469271 (orient:+) max_ev_support = 1 scaffold_21 + intron 10469247-10469271 asmbl_28873 scaffold_21 + retained_intron 10469247-10469271 asmbl_28872 // Retained and Spliced Intron # retained_intron 10965131-10965246 (orient:+) max_ev_support = 2 # spliced_intron 10965131-10965246 (orient:+) max_ev_support = 3 scaffold_21 + intron 10965131-10965246 asmbl_28900,asmbl_28902,asmbl_28904 scaffold_21 + retained_intron 10965131-10965246 asmbl_28901 // Retained and Spliced Intron # retained_intron 10990182-10990263 (orient:+) max_ev_support = 2 # spliced_intron 10990182-10990263 (orient:+) max_ev_support = 1 scaffold_21 + intron 10990182-10990263 asmbl_28913 scaffold_21 + retained_intron 10990182-10990263 asmbl_28912 // Retained and Spliced Intron # retained_intron 11303261-11303360 (orient:+) max_ev_support = 1 # spliced_intron 11303261-11303360 (orient:+) max_ev_support = 1 scaffold_21 + intron 11303261-11303360 asmbl_28920 scaffold_21 + retained_intron 11303261-11303360 asmbl_28919 // Exon Skipping and Retention # skipped_exon 11312862-11315663 (orient:+) max_ev_support = 1 # retained_exon 11315508-11315579 (orient:+) max_ev_support = 2 scaffold_21 + retained_exons 11315508-11315579 asmbl_28922 scaffold_21 + intron_skips_exon 11312862-11315663 asmbl_28923 // Retained and Spliced Intron # retained_intron 1221-1252 (orient:-) max_ev_support = 1 # spliced_intron 1221-1252 (orient:-) max_ev_support = 1 scaffold_2174 - intron 1221-1252 asmbl_29060 scaffold_2174 - retained_intron 1221-1252 asmbl_29059 // Retained and Spliced Intron # retained_intron 839-882 (orient:-) max_ev_support = 1 # spliced_intron 839-882 (orient:-) max_ev_support = 1 scaffold_2174 - intron 839-882 asmbl_29059 scaffold_2174 - retained_intron 839-882 asmbl_29060 // Retained and Spliced Intron # retained_intron 223722-223962 (orient:-) max_ev_support = 2 # spliced_intron 223722-223962 (orient:-) max_ev_support = 1 scaffold_22 - intron 223722-223962 asmbl_29076 scaffold_22 - retained_intron 223722-223962 asmbl_29074,asmbl_29075,asmbl_29077,asmbl_29078,asmbl_29080,asmbl_29081,asmbl_29082 // Retained and Spliced Intron # retained_intron 224379-224570 (orient:-) max_ev_support = 2 # spliced_intron 224379-224570 (orient:-) max_ev_support = 2 scaffold_22 - intron 224379-224570 asmbl_29075,asmbl_29076,asmbl_29081,asmbl_29082 scaffold_22 - retained_intron 224379-224570 asmbl_29074,asmbl_29078,asmbl_29080 // Retained and Spliced Intron # retained_intron 224379-224758 (orient:-) max_ev_support = 2 # spliced_intron 224379-224758 (orient:-) max_ev_support = 1 scaffold_22 - intron 224379-224758 asmbl_29077 scaffold_22 - retained_intron 224379-224758 asmbl_29074,asmbl_29080 // Retained and Spliced Intron # retained_intron 224610-224758 (orient:-) max_ev_support = 2 # spliced_intron 224610-224758 (orient:-) max_ev_support = 2 scaffold_22 - intron 224610-224758 asmbl_29075,asmbl_29076,asmbl_29078,asmbl_29081,asmbl_29082 scaffold_22 - retained_intron 224610-224758 asmbl_29074,asmbl_29080 // Exon Skipping and Retention # skipped_exon 224379-224758 (orient:-) max_ev_support = 1 # retained_exon 224571-224609 (orient:-) max_ev_support = 2 scaffold_22 - retained_exons 224571-224609 asmbl_29075,asmbl_29076,asmbl_29081,asmbl_29082 scaffold_22 - intron_skips_exon 224379-224758 asmbl_29077 // Exon Skipping and Retention # skipped_exon 230435-231354 (orient:-) max_ev_support = 2 # retained_exon 230897-230930 (orient:-) max_ev_support = 1 scaffold_22 - retained_exons 230897-230930 asmbl_29077,asmbl_29081 scaffold_22 - intron_skips_exon 230435-231354 asmbl_29075,asmbl_29076,asmbl_29080 // Retained and Spliced Intron # retained_intron 504668-504905 (orient:-) max_ev_support = 3 # spliced_intron 504668-504905 (orient:-) max_ev_support = 3 scaffold_22 - intron 504668-504905 asmbl_29090,asmbl_29092,asmbl_29093,asmbl_29102,asmbl_29103 scaffold_22 - retained_intron 504668-504905 asmbl_29091 // Retained and Spliced Intron # retained_intron 504274-504463 (orient:-) max_ev_support = 2 # spliced_intron 504274-504463 (orient:-) max_ev_support = 3 scaffold_22 - intron 504274-504463 asmbl_29090,asmbl_29091,asmbl_29092,asmbl_29102 scaffold_22 - retained_intron 504274-504463 asmbl_29093,asmbl_29103 // Exon Skipping and Retention # skipped_exon 511408-512941 (orient:-) max_ev_support = 3 # retained_exon 512491-512561 (orient:-) max_ev_support = 3 scaffold_22 - retained_exons 512491-512561 asmbl_29094 scaffold_22 - intron_skips_exon 511408-512941 asmbl_29092,asmbl_29098,asmbl_29099,asmbl_29100,asmbl_29103 // Retained and Spliced Intron # retained_intron 506433-506518 (orient:-) max_ev_support = 2 # spliced_intron 506433-506518 (orient:-) max_ev_support = 3 scaffold_22 - intron 506433-506518 asmbl_29092,asmbl_29094,asmbl_29099,asmbl_29101,asmbl_29102,asmbl_29103 scaffold_22 - retained_intron 506433-506518 asmbl_29100 // Retained and Spliced Intron # retained_intron 736233-736408 (orient:-) max_ev_support = 2 # spliced_intron 736233-736408 (orient:-) max_ev_support = 2 scaffold_22 - intron 736233-736408 asmbl_29123 scaffold_22 - retained_intron 736233-736408 asmbl_29122 // Retained and Spliced Intron # retained_intron 744120-744573 (orient:-) max_ev_support = 1 # spliced_intron 744120-744573 (orient:-) max_ev_support = 2 scaffold_22 - intron 744120-744573 asmbl_29126,asmbl_29127 scaffold_22 - retained_intron 744120-744573 asmbl_29128 // Retained and Spliced Intron # retained_intron 1013399-1013787 (orient:-) max_ev_support = 2 # spliced_intron 1013399-1013787 (orient:-) max_ev_support = 2 scaffold_22 - intron 1013399-1013787 asmbl_29141 scaffold_22 - retained_intron 1013399-1013787 asmbl_29142 // Retained and Spliced Intron # retained_intron 1013479-1013787 (orient:-) max_ev_support = 2 # spliced_intron 1013479-1013787 (orient:-) max_ev_support = 2 scaffold_22 - intron 1013479-1013787 asmbl_29140 scaffold_22 - retained_intron 1013479-1013787 asmbl_29142 // Retained and Spliced Intron # retained_intron 1626257-1626515 (orient:-) max_ev_support = 2 # spliced_intron 1626257-1626515 (orient:-) max_ev_support = 2 scaffold_22 - intron 1626257-1626515 asmbl_29145 scaffold_22 - retained_intron 1626257-1626515 asmbl_29144 // Retained and Spliced Intron # retained_intron 1707174-1707269 (orient:-) max_ev_support = 3 # spliced_intron 1707174-1707269 (orient:-) max_ev_support = 3 scaffold_22 - intron 1707174-1707269 asmbl_29147 scaffold_22 - retained_intron 1707174-1707269 asmbl_29148 // Retained and Spliced Intron # retained_intron 1706545-1706810 (orient:-) max_ev_support = 1 # spliced_intron 1706545-1706810 (orient:-) max_ev_support = 3 scaffold_22 - intron 1706545-1706810 asmbl_29147,asmbl_29148 scaffold_22 - retained_intron 1706545-1706810 asmbl_29150 // Retained and Spliced Intron # retained_intron 3532808-3532917 (orient:-) max_ev_support = 1 # spliced_intron 3532808-3532917 (orient:-) max_ev_support = 1 scaffold_22 - intron 3532808-3532917 asmbl_29175 scaffold_22 - retained_intron 3532808-3532917 asmbl_29176 // Retained and Spliced Intron # retained_intron 3782822-3783053 (orient:-) max_ev_support = 1 # spliced_intron 3782822-3783053 (orient:-) max_ev_support = 1 scaffold_22 - intron 3782822-3783053 asmbl_29183 scaffold_22 - retained_intron 3782822-3783053 asmbl_29184 // Exon Skipping and Retention # skipped_exon 3790101-3790999 (orient:-) max_ev_support = 1 # retained_exon 3790472-3790504 (orient:-) max_ev_support = 2 scaffold_22 - retained_exons 3790472-3790504 asmbl_29186,asmbl_29188 scaffold_22 - intron_skips_exon 3790101-3790999 asmbl_29187,asmbl_29189 // Retained and Spliced Intron # retained_intron 4225894-4226332 (orient:-) max_ev_support = 2 # spliced_intron 4225894-4226332 (orient:-) max_ev_support = 2 scaffold_22 - intron 4225894-4226332 asmbl_29213,asmbl_29214,asmbl_29218,asmbl_29226 scaffold_22 - retained_intron 4225894-4226332 asmbl_29212,asmbl_29222,asmbl_29223,asmbl_29225,asmbl_29227 // Exon Skipping and Retention # skipped_exon 4232080-4232451 (orient:-) max_ev_support = 2 # retained_exon 4232260-4232328 (orient:-) max_ev_support = 2 scaffold_22 - retained_exons 4232260-4232328 asmbl_29212,asmbl_29214,asmbl_29223,asmbl_29225,asmbl_29226 scaffold_22 - intron_skips_exon 4232080-4232451 asmbl_29213,asmbl_29222,asmbl_29227 // Exon Skipping and Retention # skipped_exon 4239153-4240805 (orient:-) max_ev_support = 2 # retained_exon 4239310-4240364 (orient:-) max_ev_support = 2 scaffold_22 - retained_exons 4239310-4240364 asmbl_29212,asmbl_29219 scaffold_22 - intron_skips_exon 4239153-4240805 asmbl_29214,asmbl_29215 // Retained and Spliced Intron # retained_intron 4239535-4239758 (orient:-) max_ev_support = 2 # spliced_intron 4239535-4239758 (orient:-) max_ev_support = 1 scaffold_22 - intron 4239535-4239758 asmbl_29213,asmbl_29220 scaffold_22 - retained_intron 4239535-4239758 asmbl_29212,asmbl_29219 // Retained and Spliced Intron # retained_intron 4226897-4227163 (orient:-) max_ev_support = 1 # spliced_intron 4226897-4227163 (orient:-) max_ev_support = 2 scaffold_22 - intron 4226897-4227163 asmbl_29212,asmbl_29213,asmbl_29214,asmbl_29222,asmbl_29223,asmbl_29225,asmbl_29226,asmbl_29227 scaffold_22 - retained_intron 4226897-4227163 asmbl_29218 // Retained and Spliced Intron # retained_intron 4227359-4227697 (orient:-) max_ev_support = 1 # spliced_intron 4227359-4227697 (orient:-) max_ev_support = 2 scaffold_22 - intron 4227359-4227697 asmbl_29212,asmbl_29213,asmbl_29214,asmbl_29222,asmbl_29223,asmbl_29225,asmbl_29226,asmbl_29227 scaffold_22 - retained_intron 4227359-4227697 asmbl_29218 // Retained and Spliced Intron # retained_intron 4241052-4241193 (orient:-) max_ev_support = 1 # spliced_intron 4241052-4241193 (orient:-) max_ev_support = 2 scaffold_22 - intron 4241052-4241193 asmbl_29212,asmbl_29213,asmbl_29214,asmbl_29215,asmbl_29220 scaffold_22 - retained_intron 4241052-4241193 asmbl_29219 // Retained and Spliced Intron # retained_intron 4239789-4240805 (orient:-) max_ev_support = 1 # spliced_intron 4239789-4240805 (orient:-) max_ev_support = 1 scaffold_22 - intron 4239789-4240805 asmbl_29213 scaffold_22 - retained_intron 4239789-4240805 asmbl_29220 // Retained and Spliced Intron # retained_intron 4240365-4240805 (orient:-) max_ev_support = 1 # spliced_intron 4240365-4240805 (orient:-) max_ev_support = 2 scaffold_22 - intron 4240365-4240805 asmbl_29212,asmbl_29219 scaffold_22 - retained_intron 4240365-4240805 asmbl_29220 // Retained and Spliced Intron # retained_intron 4221540-4221851 (orient:-) max_ev_support = 1 # spliced_intron 4221540-4221851 (orient:-) max_ev_support = 2 scaffold_22 - intron 4221540-4221851 asmbl_29212,asmbl_29213,asmbl_29214,asmbl_29218,asmbl_29222,asmbl_29223,asmbl_29225,asmbl_29226,asmbl_29227 scaffold_22 - retained_intron 4221540-4221851 asmbl_29221 // Retained and Spliced Intron # retained_intron 4220495-4220866 (orient:-) max_ev_support = 1 # spliced_intron 4220495-4220866 (orient:-) max_ev_support = 2 scaffold_22 - intron 4220495-4220866 asmbl_29212,asmbl_29213,asmbl_29214,asmbl_29222,asmbl_29227 scaffold_22 - retained_intron 4220495-4220866 asmbl_29223,asmbl_29225,asmbl_29226 // Retained and Spliced Intron # retained_intron 4223113-4223394 (orient:-) max_ev_support = 1 # spliced_intron 4223113-4223394 (orient:-) max_ev_support = 2 scaffold_22 - intron 4223113-4223394 asmbl_29212,asmbl_29213,asmbl_29214,asmbl_29218,asmbl_29222,asmbl_29225,asmbl_29226 scaffold_22 - retained_intron 4223113-4223394 asmbl_29223,asmbl_29227 // Retained and Spliced Intron # retained_intron 4278389-4278555 (orient:-) max_ev_support = 3 # spliced_intron 4278389-4278555 (orient:-) max_ev_support = 1 scaffold_22 - intron 4278389-4278555 asmbl_29235 scaffold_22 - retained_intron 4278389-4278555 asmbl_29234 // Retained and Spliced Intron # retained_intron 4287947-4288162 (orient:-) max_ev_support = 1 # spliced_intron 4287947-4288162 (orient:-) max_ev_support = 2 scaffold_22 - intron 4287947-4288162 asmbl_29237,asmbl_29239,asmbl_29242 scaffold_22 - retained_intron 4287947-4288162 asmbl_29236,asmbl_29244 // Exon Skipping and Retention # skipped_exon 4286224-4288162 (orient:-) max_ev_support = 1 # retained_exon 4287918-4287946 (orient:-) max_ev_support = 2 scaffold_22 - retained_exons 4287918-4287946 asmbl_29239,asmbl_29242 scaffold_22 - intron_skips_exon 4286224-4288162 asmbl_29241 // Retained and Spliced Intron # retained_intron 4404848-4404976 (orient:-) max_ev_support = 2 # spliced_intron 4404848-4404976 (orient:-) max_ev_support = 1 scaffold_22 - intron 4404848-4404976 asmbl_29255 scaffold_22 - retained_intron 4404848-4404976 asmbl_29254 // Retained and Spliced Intron # retained_intron 4408885-4409056 (orient:-) max_ev_support = 2 # spliced_intron 4408885-4409056 (orient:-) max_ev_support = 2 scaffold_22 - intron 4408885-4409056 asmbl_29257 scaffold_22 - retained_intron 4408885-4409056 asmbl_29258 // Retained and Spliced Intron # retained_intron 4416451-4416579 (orient:-) max_ev_support = 1 # spliced_intron 4416451-4416579 (orient:-) max_ev_support = 2 scaffold_22 - intron 4416451-4416579 asmbl_29263 scaffold_22 - retained_intron 4416451-4416579 asmbl_29265 // Exon Skipping and Retention # skipped_exon 4433987-4435158 (orient:-) max_ev_support = 3 # retained_exon 4434690-4434788 (orient:-) max_ev_support = 2 scaffold_22 - retained_exons 4434690-4434788 asmbl_29267 scaffold_22 - intron_skips_exon 4433987-4435158 asmbl_29266 // Retained and Spliced Intron # retained_intron 4788211-4788482 (orient:-) max_ev_support = 2 # spliced_intron 4788211-4788482 (orient:-) max_ev_support = 2 scaffold_22 - intron 4788211-4788482 asmbl_29277 scaffold_22 - retained_intron 4788211-4788482 asmbl_29276 // Exon Skipping and Retention # skipped_exon 5984784-5985349 (orient:-) max_ev_support = 1 # retained_exon 5985018-5985087 (orient:-) max_ev_support = 1 scaffold_22 - retained_exons 5985018-5985087 asmbl_29301 scaffold_22 - intron_skips_exon 5984784-5985349 asmbl_29300 // Exon Skipping and Retention # skipped_exon 5981551-5983283 (orient:-) max_ev_support = 2 # retained_exon 5981805-5981878 (orient:-) max_ev_support = 1 scaffold_22 - retained_exons 5981805-5981878 asmbl_29302 scaffold_22 - intron_skips_exon 5981551-5983283 asmbl_29300,asmbl_29301 // Retained and Spliced Intron # retained_intron 6166014-6166161 (orient:-) max_ev_support = 2 # spliced_intron 6166014-6166161 (orient:-) max_ev_support = 2 scaffold_22 - intron 6166014-6166161 asmbl_29319 scaffold_22 - retained_intron 6166014-6166161 asmbl_29318 // Exon Skipping and Retention # skipped_exon 6217249-6218993 (orient:-) max_ev_support = 1 # retained_exon 6217741-6217849 (orient:-) max_ev_support = 1 scaffold_22 - retained_exons 6217741-6217849 asmbl_29325,asmbl_29326 scaffold_22 - intron_skips_exon 6217249-6218993 asmbl_29324 // Exon Skipping and Retention # skipped_exon 6902811-6903282 (orient:-) max_ev_support = 1 # retained_exon 6903172-6903212 (orient:-) max_ev_support = 1 scaffold_22 - retained_exons 6903172-6903212 asmbl_29345 scaffold_22 - intron_skips_exon 6902811-6903282 asmbl_29344 // Retained and Spliced Intron # retained_intron 6945536-6945630 (orient:-) max_ev_support = 1 # spliced_intron 6945536-6945630 (orient:-) max_ev_support = 2 scaffold_22 - intron 6945536-6945630 asmbl_29348 scaffold_22 - retained_intron 6945536-6945630 asmbl_29349 // Exon Skipping and Retention # skipped_exon 7248508-7249417 (orient:-) max_ev_support = 1 # retained_exon 7249211-7249237 (orient:-) max_ev_support = 1 scaffold_22 - retained_exons 7249211-7249237 asmbl_29386 scaffold_22 - intron_skips_exon 7248508-7249417 asmbl_29385,asmbl_29387 // Retained and Spliced Intron # retained_intron 7416523-7416632 (orient:-) max_ev_support = 2 # spliced_intron 7416523-7416632 (orient:-) max_ev_support = 1 scaffold_22 - intron 7416523-7416632 asmbl_29396 scaffold_22 - retained_intron 7416523-7416632 asmbl_29395,asmbl_29397 // Retained and Spliced Intron # retained_intron 7488327-7488420 (orient:-) max_ev_support = 3 # spliced_intron 7488327-7488420 (orient:-) max_ev_support = 2 scaffold_22 - intron 7488327-7488420 asmbl_29408 scaffold_22 - retained_intron 7488327-7488420 asmbl_29407 // Retained and Spliced Intron # retained_intron 7787082-7787160 (orient:-) max_ev_support = 2 # spliced_intron 7787082-7787160 (orient:-) max_ev_support = 2 scaffold_22 - intron 7787082-7787160 asmbl_29423 scaffold_22 - retained_intron 7787082-7787160 asmbl_29424 // Exon Skipping and Retention # skipped_exon 7802137-7803136 (orient:-) max_ev_support = 1 # retained_exon 7802612-7802713 (orient:-) max_ev_support = 2 scaffold_22 - retained_exons 7802612-7802713 asmbl_29426 scaffold_22 - intron_skips_exon 7802137-7803136 asmbl_29427 // Retained and Spliced Intron # retained_intron 7882885-7884431 (orient:-) max_ev_support = 1 # spliced_intron 7882885-7884431 (orient:-) max_ev_support = 1 scaffold_22 - intron 7882885-7884431 asmbl_29430 scaffold_22 - retained_intron 7882885-7884431 asmbl_29429,asmbl_29431 // Retained and Spliced Intron # retained_intron 7884588-7884719 (orient:-) max_ev_support = 2 # spliced_intron 7884588-7884719 (orient:-) max_ev_support = 1 scaffold_22 - intron 7884588-7884719 asmbl_29430,asmbl_29431 scaffold_22 - retained_intron 7884588-7884719 asmbl_29429 // Retained and Spliced Intron # retained_intron 7891905-7892011 (orient:-) max_ev_support = 2 # spliced_intron 7891905-7892011 (orient:-) max_ev_support = 2 scaffold_22 - intron 7891905-7892011 asmbl_29434 scaffold_22 - retained_intron 7891905-7892011 asmbl_29435,asmbl_29436 // Retained and Spliced Intron # retained_intron 7893263-7893360 (orient:-) max_ev_support = 2 # spliced_intron 7893263-7893360 (orient:-) max_ev_support = 1 scaffold_22 - intron 7893263-7893360 asmbl_29434 scaffold_22 - retained_intron 7893263-7893360 asmbl_29436 // Retained and Spliced Intron # retained_intron 7901370-7901566 (orient:-) max_ev_support = 3 # spliced_intron 7901370-7901566 (orient:-) max_ev_support = 3 scaffold_22 - intron 7901370-7901566 asmbl_29442 scaffold_22 - retained_intron 7901370-7901566 asmbl_29441,asmbl_29443 // Retained and Spliced Intron # retained_intron 8102654-8102969 (orient:-) max_ev_support = 1 # spliced_intron 8102654-8102969 (orient:-) max_ev_support = 1 scaffold_22 - intron 8102654-8102969 asmbl_29450 scaffold_22 - retained_intron 8102654-8102969 asmbl_29451 // Exon Skipping and Retention # skipped_exon 8236659-8237400 (orient:-) max_ev_support = 1 # retained_exon 8237055-8237190 (orient:-) max_ev_support = 2 scaffold_22 - retained_exons 8237055-8237190 asmbl_29466,asmbl_29467 scaffold_22 - intron_skips_exon 8236659-8237400 asmbl_29468 // Retained and Spliced Intron # retained_intron 8241615-8241803 (orient:-) max_ev_support = 2 # spliced_intron 8241615-8241803 (orient:-) max_ev_support = 2 scaffold_22 - intron 8241615-8241803 asmbl_29467 scaffold_22 - retained_intron 8241615-8241803 asmbl_29466,asmbl_29468 // Exon Skipping and Retention # skipped_exon 9157646-9159906 (orient:-) max_ev_support = 1 # retained_exon 9158489-9158564 (orient:-) max_ev_support = 2 scaffold_22 - retained_exons 9158489-9158564 asmbl_29518,asmbl_29521 scaffold_22 - intron_skips_exon 9157646-9159906 asmbl_29519,asmbl_29520 // Exon Skipping and Retention # skipped_exon 9157307-9158488 (orient:-) max_ev_support = 2 # retained_exon 9157570-9157645 (orient:-) max_ev_support = 1 scaffold_22 - retained_exons 9157570-9157645 asmbl_29519,asmbl_29520 scaffold_22 - intron_skips_exon 9157307-9158488 asmbl_29518,asmbl_29521 // Retained and Spliced Intron # retained_intron 9340082-9340165 (orient:-) max_ev_support = 2 # spliced_intron 9340082-9340165 (orient:-) max_ev_support = 1 scaffold_22 - intron 9340082-9340165 asmbl_29539 scaffold_22 - retained_intron 9340082-9340165 asmbl_29537 // Retained and Spliced Intron # retained_intron 9340091-9340165 (orient:-) max_ev_support = 2 # spliced_intron 9340091-9340165 (orient:-) max_ev_support = 1 scaffold_22 - intron 9340091-9340165 asmbl_29538 scaffold_22 - retained_intron 9340091-9340165 asmbl_29537 // Retained and Spliced Intron # retained_intron 9537969-9539952 (orient:-) max_ev_support = 6 # spliced_intron 9537969-9539952 (orient:-) max_ev_support = 1 scaffold_22 - intron 9537969-9539952 asmbl_29545,asmbl_29546 scaffold_22 - retained_intron 9537969-9539952 asmbl_29544 // Retained and Spliced Intron # retained_intron 9540632-9540817 (orient:-) max_ev_support = 1 # spliced_intron 9540632-9540817 (orient:-) max_ev_support = 1 scaffold_22 - intron 9540632-9540817 asmbl_29546 scaffold_22 - retained_intron 9540632-9540817 asmbl_29544,asmbl_29545 // Retained and Spliced Intron # retained_intron 9911206-9911454 (orient:-) max_ev_support = 2 # spliced_intron 9911206-9911454 (orient:-) max_ev_support = 2 scaffold_22 - intron 9911206-9911454 asmbl_29572 scaffold_22 - retained_intron 9911206-9911454 asmbl_29573 // Exon Skipping and Retention # skipped_exon 10044730-10045437 (orient:-) max_ev_support = 1 # retained_exon 10044904-10045098 (orient:-) max_ev_support = 1 scaffold_22 - retained_exons 10044904-10045098 asmbl_29578 scaffold_22 - intron_skips_exon 10044730-10045437 asmbl_29580 // Exon Skipping and Retention # skipped_exon 10237845-10238756 (orient:-) max_ev_support = 2 # retained_exon 10238117-10238146 (orient:-) max_ev_support = 2 scaffold_22 - retained_exons 10238117-10238146 asmbl_29586 scaffold_22 - intron_skips_exon 10237845-10238756 asmbl_29587,asmbl_29588 // Retained and Spliced Intron # retained_intron 10286469-10286546 (orient:-) max_ev_support = 2 # spliced_intron 10286469-10286546 (orient:-) max_ev_support = 1 scaffold_22 - intron 10286469-10286546 asmbl_29598 scaffold_22 - retained_intron 10286469-10286546 asmbl_29597 // Exon Skipping and Retention # skipped_exon 10681710-10682751 (orient:-) max_ev_support = 1 # retained_exon 10682010-10682061 (orient:-) max_ev_support = 3 scaffold_22 - retained_exons 10682010-10682061 asmbl_29615 scaffold_22 - intron_skips_exon 10681710-10682751 asmbl_29617 // Exon Skipping and Retention # skipped_exon 10682956-10684527 (orient:-) max_ev_support = 1 # retained_exon 10683112-10683558 (orient:-) max_ev_support = 1 scaffold_22 - retained_exons 10683112-10683558 asmbl_29615,asmbl_29616,asmbl_29618 scaffold_22 - intron_skips_exon 10682956-10684527 asmbl_29617 // Exon Skipping and Retention # skipped_exon 10684729-10685515 (orient:-) max_ev_support = 1 # retained_exon 10684835-10685364 (orient:-) max_ev_support = 1 scaffold_22 - retained_exons 10684835-10685038,10685161-10685364 asmbl_29615,asmbl_29616,asmbl_29618 scaffold_22 - intron_skips_exon 10684729-10685515 asmbl_29617 // Exon Skipping and Retention # skipped_exon 10681034-10682009 (orient:-) max_ev_support = 3 # retained_exon 10681598-10681709 (orient:-) max_ev_support = 1 scaffold_22 - retained_exons 10681598-10681709 asmbl_29617 scaffold_22 - intron_skips_exon 10681034-10682009 asmbl_29615,asmbl_29616 // Retained and Spliced Intron # retained_intron 11133580-11133834 (orient:-) max_ev_support = 1 # spliced_intron 11133580-11133834 (orient:-) max_ev_support = 1 scaffold_22 - intron 11133580-11133834 asmbl_29646 scaffold_22 - retained_intron 11133580-11133834 asmbl_29645 // Retained and Spliced Intron # retained_intron 11343600-11343820 (orient:-) max_ev_support = 2 # spliced_intron 11343600-11343820 (orient:-) max_ev_support = 2 scaffold_22 - intron 11343600-11343820 asmbl_29664 scaffold_22 - retained_intron 11343600-11343820 asmbl_29665 // Retained and Spliced Intron # retained_intron 11393079-11393144 (orient:-) max_ev_support = 1 # spliced_intron 11393079-11393144 (orient:-) max_ev_support = 1 scaffold_22 - intron 11393079-11393144 asmbl_29672 scaffold_22 - retained_intron 11393079-11393144 asmbl_29673 // Exon Skipping and Retention # skipped_exon 11475386-11476106 (orient:-) max_ev_support = 1 # retained_exon 11475695-11475839 (orient:-) max_ev_support = 1 scaffold_22 - retained_exons 11475695-11475839 asmbl_29680 scaffold_22 - intron_skips_exon 11475386-11476106 asmbl_29681 // Exon Skipping and Retention # skipped_exon 11475840-11476355 (orient:-) max_ev_support = 1 # retained_exon 11476107-11476251 (orient:-) max_ev_support = 1 scaffold_22 - retained_exons 11476107-11476251 asmbl_29681 scaffold_22 - intron_skips_exon 11475840-11476355 asmbl_29680 // Retained and Spliced Intron # retained_intron 26600-26679 (orient:+) max_ev_support = 3 # spliced_intron 26600-26679 (orient:+) max_ev_support = 3 scaffold_22 + intron 26600-26679 asmbl_29798,asmbl_29799 scaffold_22 + retained_intron 26600-26679 asmbl_29797 // Retained and Spliced Intron # retained_intron 31144-31291 (orient:+) max_ev_support = 2 # spliced_intron 31144-31291 (orient:+) max_ev_support = 2 scaffold_22 + intron 31144-31291 asmbl_29801 scaffold_22 + retained_intron 31144-31291 asmbl_29802 // Retained and Spliced Intron # retained_intron 210328-210515 (orient:+) max_ev_support = 3 # spliced_intron 210328-210515 (orient:+) max_ev_support = 2 scaffold_22 + intron 210328-210515 asmbl_29823 scaffold_22 + retained_intron 210328-210515 asmbl_29818,asmbl_29819,asmbl_29820,asmbl_29821,asmbl_29822 // Retained and Spliced Intron # retained_intron 215344-216306 (orient:+) max_ev_support = 2 # spliced_intron 215344-216306 (orient:+) max_ev_support = 2 scaffold_22 + intron 215344-216306 asmbl_29821,asmbl_29822,asmbl_29823 scaffold_22 + retained_intron 215344-216306 asmbl_29819,asmbl_29820 // Retained and Spliced Intron # retained_intron 214606-214723 (orient:+) max_ev_support = 2 # spliced_intron 214606-214723 (orient:+) max_ev_support = 2 scaffold_22 + intron 214606-214723 asmbl_29818,asmbl_29819,asmbl_29821,asmbl_29823 scaffold_22 + retained_intron 214606-214723 asmbl_29820,asmbl_29822 // Retained and Spliced Intron # retained_intron 214832-215205 (orient:+) max_ev_support = 2 # spliced_intron 214832-215205 (orient:+) max_ev_support = 2 scaffold_22 + intron 214832-215205 asmbl_29819,asmbl_29821,asmbl_29822,asmbl_29823 scaffold_22 + retained_intron 214832-215205 asmbl_29820 // Retained and Spliced Intron # retained_intron 214832-216306 (orient:+) max_ev_support = 2 # spliced_intron 214832-216306 (orient:+) max_ev_support = 1 scaffold_22 + intron 214832-216306 asmbl_29818 scaffold_22 + retained_intron 214832-216306 asmbl_29820 // Exon Skipping and Retention # skipped_exon 214832-216306 (orient:+) max_ev_support = 1 # retained_exon 215206-215343 (orient:+) max_ev_support = 2 scaffold_22 + retained_exons 215206-215343 asmbl_29821,asmbl_29822,asmbl_29823 scaffold_22 + intron_skips_exon 214832-216306 asmbl_29818 // Retained and Spliced Intron # retained_intron 237472-237591 (orient:+) max_ev_support = 1 # spliced_intron 237472-237591 (orient:+) max_ev_support = 2 scaffold_22 + intron 237472-237591 asmbl_29825 scaffold_22 + retained_intron 237472-237591 asmbl_29826 // Exon Skipping and Retention # skipped_exon 322655-323437 (orient:+) max_ev_support = 2 # retained_exon 323133-323189 (orient:+) max_ev_support = 1 scaffold_22 + retained_exons 323133-323189 asmbl_29839,asmbl_29842 scaffold_22 + intron_skips_exon 322655-323437 asmbl_29838,asmbl_29845 // Retained and Spliced Intron # retained_intron 322655-323132 (orient:+) max_ev_support = 1 # spliced_intron 322655-323132 (orient:+) max_ev_support = 1 scaffold_22 + intron 322655-323132 asmbl_29839,asmbl_29842 scaffold_22 + retained_intron 322655-323132 asmbl_29840,asmbl_29843 // Retained and Spliced Intron # retained_intron 322655-323437 (orient:+) max_ev_support = 1 # spliced_intron 322655-323437 (orient:+) max_ev_support = 2 scaffold_22 + intron 322655-323437 asmbl_29838,asmbl_29845 scaffold_22 + retained_intron 322655-323437 asmbl_29840 // Retained and Spliced Intron # retained_intron 323190-323437 (orient:+) max_ev_support = 1 # spliced_intron 323190-323437 (orient:+) max_ev_support = 1 scaffold_22 + intron 323190-323437 asmbl_29839,asmbl_29842 scaffold_22 + retained_intron 323190-323437 asmbl_29840 // Retained and Spliced Intron # retained_intron 326720-327593 (orient:+) max_ev_support = 2 # spliced_intron 326720-327593 (orient:+) max_ev_support = 3 scaffold_22 + intron 326720-327593 asmbl_29846 scaffold_22 + retained_intron 326720-327593 asmbl_29847 // Retained and Spliced Intron # retained_intron 484303-485440 (orient:+) max_ev_support = 1 # spliced_intron 484303-485440 (orient:+) max_ev_support = 3 scaffold_22 + intron 484303-485440 asmbl_29854 scaffold_22 + retained_intron 484303-485440 asmbl_29855 // Retained and Spliced Intron # retained_intron 485089-485440 (orient:+) max_ev_support = 1 # spliced_intron 485089-485440 (orient:+) max_ev_support = 1 scaffold_22 + intron 485089-485440 asmbl_29856 scaffold_22 + retained_intron 485089-485440 asmbl_29855 // Retained and Spliced Intron # retained_intron 485520-485599 (orient:+) max_ev_support = 1 # spliced_intron 485520-485599 (orient:+) max_ev_support = 3 scaffold_22 + intron 485520-485599 asmbl_29854,asmbl_29856 scaffold_22 + retained_intron 485520-485599 asmbl_29855 // Retained and Spliced Intron # retained_intron 497867-498066 (orient:+) max_ev_support = 1 # spliced_intron 497867-498066 (orient:+) max_ev_support = 1 scaffold_22 + intron 497867-498066 asmbl_29859 scaffold_22 + retained_intron 497867-498066 asmbl_29860 // Retained and Spliced Intron # retained_intron 497867-498164 (orient:+) max_ev_support = 1 # spliced_intron 497867-498164 (orient:+) max_ev_support = 1 scaffold_22 + intron 497867-498164 asmbl_29858 scaffold_22 + retained_intron 497867-498164 asmbl_29860 // Retained and Spliced Intron # retained_intron 594271-594371 (orient:+) max_ev_support = 2 # spliced_intron 594271-594371 (orient:+) max_ev_support = 3 scaffold_22 + intron 594271-594371 asmbl_29867,asmbl_29869 scaffold_22 + retained_intron 594271-594371 asmbl_29868 // Retained and Spliced Intron # retained_intron 647867-648211 (orient:+) max_ev_support = 3 # spliced_intron 647867-648211 (orient:+) max_ev_support = 3 scaffold_22 + intron 647867-648211 asmbl_29875 scaffold_22 + retained_intron 647867-648211 asmbl_29876 // Exon Skipping and Retention # skipped_exon 685999-686536 (orient:+) max_ev_support = 3 # retained_exon 686343-686402 (orient:+) max_ev_support = 2 scaffold_22 + retained_exons 686343-686402 asmbl_29878,asmbl_29879 scaffold_22 + intron_skips_exon 685999-686536 asmbl_29877 // Exon Skipping and Retention # skipped_exon 685158-685914 (orient:+) max_ev_support = 2 # retained_exon 685622-685673 (orient:+) max_ev_support = 1 scaffold_22 + retained_exons 685622-685673 asmbl_29879 scaffold_22 + intron_skips_exon 685158-685914 asmbl_29878 // Exon Skipping and Retention # skipped_exon 690259-693133 (orient:+) max_ev_support = 1 # retained_exon 691600-691681 (orient:+) max_ev_support = 4 scaffold_22 + retained_exons 691600-691681 asmbl_29881,asmbl_29882 scaffold_22 + intron_skips_exon 690259-693133 asmbl_29883 // Retained and Spliced Intron # retained_intron 752536-752836 (orient:+) max_ev_support = 2 # spliced_intron 752536-752836 (orient:+) max_ev_support = 3 scaffold_22 + intron 752536-752836 asmbl_29887 scaffold_22 + retained_intron 752536-752836 asmbl_29888 // Retained and Spliced Intron # retained_intron 900648-900742 (orient:+) max_ev_support = 2 # spliced_intron 900648-900742 (orient:+) max_ev_support = 2 scaffold_22 + intron 900648-900742 asmbl_29897 scaffold_22 + retained_intron 900648-900742 asmbl_29898 // Retained and Spliced Intron # retained_intron 958386-958490 (orient:+) max_ev_support = 2 # spliced_intron 958386-958490 (orient:+) max_ev_support = 3 scaffold_22 + intron 958386-958490 asmbl_29905 scaffold_22 + retained_intron 958386-958490 asmbl_29906 // Retained and Spliced Intron # retained_intron 1008363-1008659 (orient:+) max_ev_support = 1 # spliced_intron 1008363-1008659 (orient:+) max_ev_support = 2 scaffold_22 + intron 1008363-1008659 asmbl_29913,asmbl_29915,asmbl_29917 scaffold_22 + retained_intron 1008363-1008659 asmbl_29914,asmbl_29916 // Exon Skipping and Retention # skipped_exon 2387481-2389733 (orient:+) max_ev_support = 1 # retained_exon 2388115-2388156 (orient:+) max_ev_support = 1 scaffold_22 + retained_exons 2388115-2388156 asmbl_29938,asmbl_29940,asmbl_29941 scaffold_22 + intron_skips_exon 2387481-2389733 asmbl_29942 // Retained and Spliced Intron # retained_intron 4189098-4189298 (orient:+) max_ev_support = 1 # spliced_intron 4189098-4189298 (orient:+) max_ev_support = 2 scaffold_22 + intron 4189098-4189298 asmbl_29968 scaffold_22 + retained_intron 4189098-4189298 asmbl_29969,asmbl_29970 // Retained and Spliced Intron # retained_intron 4211178-4211284 (orient:+) max_ev_support = 2 # spliced_intron 4211178-4211284 (orient:+) max_ev_support = 1 scaffold_22 + intron 4211178-4211284 asmbl_29975 scaffold_22 + retained_intron 4211178-4211284 asmbl_29973,asmbl_29974 // Retained and Spliced Intron # retained_intron 4345965-4346077 (orient:+) max_ev_support = 2 # spliced_intron 4345965-4346077 (orient:+) max_ev_support = 2 scaffold_22 + intron 4345965-4346077 asmbl_29981 scaffold_22 + retained_intron 4345965-4346077 asmbl_29982 // Exon Skipping and Retention # skipped_exon 4355625-4356493 (orient:+) max_ev_support = 2 # retained_exon 4355993-4356031 (orient:+) max_ev_support = 2 scaffold_22 + retained_exons 4355993-4356031 asmbl_29984,asmbl_29986 scaffold_22 + intron_skips_exon 4355625-4356493 asmbl_29983 // Retained and Spliced Intron # retained_intron 4368173-4368545 (orient:+) max_ev_support = 3 # spliced_intron 4368173-4368545 (orient:+) max_ev_support = 2 scaffold_22 + intron 4368173-4368545 asmbl_29996 scaffold_22 + retained_intron 4368173-4368545 asmbl_29995 // Exon Skipping and Retention # skipped_exon 4577207-4577915 (orient:+) max_ev_support = 1 # retained_exon 4577553-4577657 (orient:+) max_ev_support = 2 scaffold_22 + retained_exons 4577553-4577657 asmbl_30023,asmbl_30024 scaffold_22 + intron_skips_exon 4577207-4577915 asmbl_30030 // Retained and Spliced Intron # retained_intron 5922960-5923153 (orient:+) max_ev_support = 2 # spliced_intron 5922960-5923153 (orient:+) max_ev_support = 2 scaffold_22 + intron 5922960-5923153 asmbl_30068 scaffold_22 + retained_intron 5922960-5923153 asmbl_30069,asmbl_30070 // Retained and Spliced Intron # retained_intron 5923249-5923359 (orient:+) max_ev_support = 2 # spliced_intron 5923249-5923359 (orient:+) max_ev_support = 2 scaffold_22 + intron 5923249-5923359 asmbl_30068 scaffold_22 + retained_intron 5923249-5923359 asmbl_30069,asmbl_30070 // Retained and Spliced Intron # retained_intron 5923485-5923610 (orient:+) max_ev_support = 2 # spliced_intron 5923485-5923610 (orient:+) max_ev_support = 2 scaffold_22 + intron 5923485-5923610 asmbl_30068,asmbl_30070 scaffold_22 + retained_intron 5923485-5923610 asmbl_30069 // Exon Skipping and Retention # skipped_exon 6130130-6131156 (orient:+) max_ev_support = 2 # retained_exon 6130242-6130438 (orient:+) max_ev_support = 2 scaffold_22 + retained_exons 6130242-6130438 asmbl_30096,asmbl_30099 scaffold_22 + intron_skips_exon 6130130-6131156 asmbl_30100,asmbl_30104 // Retained and Spliced Intron # retained_intron 6128541-6128687 (orient:+) max_ev_support = 3 # spliced_intron 6128541-6128687 (orient:+) max_ev_support = 1 scaffold_22 + intron 6128541-6128687 asmbl_30100 scaffold_22 + retained_intron 6128541-6128687 asmbl_30098,asmbl_30099,asmbl_30101 // Retained and Spliced Intron # retained_intron 6130130-6130241 (orient:+) max_ev_support = 2 # spliced_intron 6130130-6130241 (orient:+) max_ev_support = 2 scaffold_22 + intron 6130130-6130241 asmbl_30096,asmbl_30097,asmbl_30099,asmbl_30102,asmbl_30103 scaffold_22 + retained_intron 6130130-6130241 asmbl_30098,asmbl_30101,asmbl_30106 // Retained and Spliced Intron # retained_intron 6128912-6129087 (orient:+) max_ev_support = 1 # spliced_intron 6128912-6129087 (orient:+) max_ev_support = 2 scaffold_22 + intron 6128912-6129087 asmbl_30096,asmbl_30097,asmbl_30098,asmbl_30100,asmbl_30102,asmbl_30103 scaffold_22 + retained_intron 6128912-6129087 asmbl_30099,asmbl_30101 // Retained and Spliced Intron # retained_intron 6131523-6131689 (orient:+) max_ev_support = 3 # spliced_intron 6131523-6131689 (orient:+) max_ev_support = 2 scaffold_22 + intron 6131523-6131689 asmbl_30096,asmbl_30099,asmbl_30104 scaffold_22 + retained_intron 6131523-6131689 asmbl_30100 // Retained and Spliced Intron # retained_intron 6127007-6127298 (orient:+) max_ev_support = 1 # spliced_intron 6127007-6127298 (orient:+) max_ev_support = 3 scaffold_22 + intron 6127007-6127298 asmbl_30096,asmbl_30097,asmbl_30102,asmbl_30107 scaffold_22 + retained_intron 6127007-6127298 asmbl_30103 // Retained and Spliced Intron # retained_intron 6513438-6513461 (orient:+) max_ev_support = 3 # spliced_intron 6513438-6513461 (orient:+) max_ev_support = 1 scaffold_22 + intron 6513438-6513461 asmbl_30116 scaffold_22 + retained_intron 6513438-6513461 asmbl_30115 // Retained and Spliced Intron # retained_intron 6991765-6991914 (orient:+) max_ev_support = 4 # spliced_intron 6991765-6991914 (orient:+) max_ev_support = 1 scaffold_22 + intron 6991765-6991914 asmbl_30146 scaffold_22 + retained_intron 6991765-6991914 asmbl_30145 // Exon Skipping and Retention # skipped_exon 7120943-7123351 (orient:+) max_ev_support = 2 # retained_exon 7122703-7122873 (orient:+) max_ev_support = 2 scaffold_22 + retained_exons 7122703-7122873 asmbl_30155,asmbl_30158 scaffold_22 + intron_skips_exon 7120943-7123351 asmbl_30156,asmbl_30159 // Retained and Spliced Intron # retained_intron 7341577-7341665 (orient:+) max_ev_support = 1 # spliced_intron 7341577-7341665 (orient:+) max_ev_support = 2 scaffold_22 + intron 7341577-7341665 asmbl_30172 scaffold_22 + retained_intron 7341577-7341665 asmbl_30173 // Retained and Spliced Intron # retained_intron 7454499-7454589 (orient:+) max_ev_support = 2 # spliced_intron 7454499-7454589 (orient:+) max_ev_support = 1 scaffold_22 + intron 7454499-7454589 asmbl_30187 scaffold_22 + retained_intron 7454499-7454589 asmbl_30186 // Exon Skipping and Retention # skipped_exon 7691662-7693717 (orient:+) max_ev_support = 1 # retained_exon 7691782-7691840 (orient:+) max_ev_support = 1 scaffold_22 + retained_exons 7691782-7691840 asmbl_30210 scaffold_22 + intron_skips_exon 7691662-7693717 asmbl_30213 // Exon Skipping and Retention # skipped_exon 7691841-7693876 (orient:+) max_ev_support = 1 # retained_exon 7693718-7693776 (orient:+) max_ev_support = 1 scaffold_22 + retained_exons 7693718-7693776 asmbl_30213 scaffold_22 + intron_skips_exon 7691841-7693876 asmbl_30210 // Retained and Spliced Intron # retained_intron 7972285-7972608 (orient:+) max_ev_support = 3 # spliced_intron 7972285-7972608 (orient:+) max_ev_support = 1 scaffold_22 + intron 7972285-7972608 asmbl_30248 scaffold_22 + retained_intron 7972285-7972608 asmbl_30247 // Exon Skipping and Retention # skipped_exon 9243628-9245873 (orient:+) max_ev_support = 2 # retained_exon 9244217-9244318 (orient:+) max_ev_support = 2 scaffold_22 + retained_exons 9244217-9244318 asmbl_30304 scaffold_22 + intron_skips_exon 9243628-9245873 asmbl_30303 // Retained and Spliced Intron # retained_intron 9399585-9399781 (orient:+) max_ev_support = 1 # spliced_intron 9399585-9399781 (orient:+) max_ev_support = 1 scaffold_22 + intron 9399585-9399781 asmbl_30306 scaffold_22 + retained_intron 9399585-9399781 asmbl_30307 // Retained and Spliced Intron # retained_intron 9402434-9402476 (orient:+) max_ev_support = 1 # spliced_intron 9402434-9402476 (orient:+) max_ev_support = 1 scaffold_22 + intron 9402434-9402476 asmbl_30306 scaffold_22 + retained_intron 9402434-9402476 asmbl_30307 // Retained and Spliced Intron # retained_intron 9647011-9647213 (orient:+) max_ev_support = 1 # spliced_intron 9647011-9647213 (orient:+) max_ev_support = 3 scaffold_22 + intron 9647011-9647213 asmbl_30309 scaffold_22 + retained_intron 9647011-9647213 asmbl_30310 // Exon Skipping and Retention # skipped_exon 9718380-9721163 (orient:+) max_ev_support = 1 # retained_exon 9720834-9720993 (orient:+) max_ev_support = 2 scaffold_22 + retained_exons 9720834-9720993 asmbl_30313 scaffold_22 + intron_skips_exon 9718380-9721163 asmbl_30314 // Exon Skipping and Retention # skipped_exon 9718656-9721616 (orient:+) max_ev_support = 1 # retained_exon 9720834-9721268 (orient:+) max_ev_support = 2 scaffold_22 + retained_exons 9720834-9720993,9721164-9721268 asmbl_30313 scaffold_22 + intron_skips_exon 9718656-9721616 asmbl_30315 // Exon Skipping and Retention # skipped_exon 9719199-9721961 (orient:+) max_ev_support = 1 # retained_exon 9720834-9721808 (orient:+) max_ev_support = 2 scaffold_22 + retained_exons 9720834-9720993,9721164-9721268,9721617-9721808 asmbl_30313 scaffold_22 + intron_skips_exon 9719199-9721961 asmbl_30316 // Exon Skipping and Retention # skipped_exon 9718010-9720833 (orient:+) max_ev_support = 2 # retained_exon 9718220-9718379 (orient:+) max_ev_support = 1 scaffold_22 + retained_exons 9718220-9718379 asmbl_30314 scaffold_22 + intron_skips_exon 9718010-9720833 asmbl_30313 // Retained and Spliced Intron # retained_intron 10004898-10005099 (orient:+) max_ev_support = 1 # spliced_intron 10004898-10005099 (orient:+) max_ev_support = 1 scaffold_22 + intron 10004898-10005099 asmbl_30336 scaffold_22 + retained_intron 10004898-10005099 asmbl_30337 // Retained and Spliced Intron # retained_intron 10069396-10069489 (orient:+) max_ev_support = 1 # spliced_intron 10069396-10069489 (orient:+) max_ev_support = 1 scaffold_22 + intron 10069396-10069489 asmbl_30344 scaffold_22 + retained_intron 10069396-10069489 asmbl_30345 // Retained and Spliced Intron # retained_intron 10089893-10089999 (orient:+) max_ev_support = 3 # spliced_intron 10089893-10089999 (orient:+) max_ev_support = 3 scaffold_22 + intron 10089893-10089999 asmbl_30347 scaffold_22 + retained_intron 10089893-10089999 asmbl_30346 // Retained and Spliced Intron # retained_intron 10320358-10320529 (orient:+) max_ev_support = 1 # spliced_intron 10320358-10320529 (orient:+) max_ev_support = 1 scaffold_22 + intron 10320358-10320529 asmbl_30355 scaffold_22 + retained_intron 10320358-10320529 asmbl_30354 // Retained and Spliced Intron # retained_intron 11402361-11402463 (orient:+) max_ev_support = 2 # spliced_intron 11402361-11402463 (orient:+) max_ev_support = 1 scaffold_22 + intron 11402361-11402463 asmbl_30379 scaffold_22 + retained_intron 11402361-11402463 asmbl_30377,asmbl_30378 // Retained and Spliced Intron # retained_intron 11404015-11404118 (orient:+) max_ev_support = 1 # spliced_intron 11404015-11404118 (orient:+) max_ev_support = 1 scaffold_22 + intron 11404015-11404118 asmbl_30380,asmbl_30382 scaffold_22 + retained_intron 11404015-11404118 asmbl_30381 // Retained and Spliced Intron # retained_intron 11473745-11473840 (orient:+) max_ev_support = 1 # spliced_intron 11473745-11473840 (orient:+) max_ev_support = 3 scaffold_22 + intron 11473745-11473840 asmbl_30389 scaffold_22 + retained_intron 11473745-11473840 asmbl_30392 // Retained and Spliced Intron # retained_intron 11543991-11544062 (orient:+) max_ev_support = 1 # spliced_intron 11543991-11544062 (orient:+) max_ev_support = 1 scaffold_22 + intron 11543991-11544062 asmbl_30408 scaffold_22 + retained_intron 11543991-11544062 asmbl_30406,asmbl_30407 // Retained and Spliced Intron # retained_intron 11544027-11544174 (orient:+) max_ev_support = 1 # spliced_intron 11544027-11544174 (orient:+) max_ev_support = 1 scaffold_22 + intron 11544027-11544174 asmbl_30405 scaffold_22 + retained_intron 11544027-11544174 asmbl_30407 // Retained and Spliced Intron # retained_intron 11544135-11544174 (orient:+) max_ev_support = 1 # spliced_intron 11544135-11544174 (orient:+) max_ev_support = 1 scaffold_22 + intron 11544135-11544174 asmbl_30406 scaffold_22 + retained_intron 11544135-11544174 asmbl_30407,asmbl_30408 // Retained and Spliced Intron # retained_intron 11731907-11731990 (orient:+) max_ev_support = 1 # spliced_intron 11731907-11731990 (orient:+) max_ev_support = 1 scaffold_22 + intron 11731907-11731990 asmbl_30423 scaffold_22 + retained_intron 11731907-11731990 asmbl_30422 // Retained and Spliced Intron # retained_intron 1171-1315 (orient:-) max_ev_support = 3 # spliced_intron 1171-1315 (orient:-) max_ev_support = 2 scaffold_2208 - intron 1171-1315 asmbl_30545 scaffold_2208 - retained_intron 1171-1315 asmbl_30544 // Retained and Spliced Intron # retained_intron 774-866 (orient:+) max_ev_support = 1 # spliced_intron 774-866 (orient:+) max_ev_support = 1 scaffold_2237 + intron 774-866 asmbl_30553 scaffold_2237 + retained_intron 774-866 asmbl_30552 // Exon Skipping and Retention # skipped_exon 403-1245 (orient:-) max_ev_support = 1 # retained_exon 812-921 (orient:-) max_ev_support = 1 scaffold_2258 - retained_exons 812-921 asmbl_30559 scaffold_2258 - intron_skips_exon 403-1245 asmbl_30560 // Exon Skipping and Retention # skipped_exon 158-811 (orient:-) max_ev_support = 1 # retained_exon 293-402 (orient:-) max_ev_support = 1 scaffold_2258 - retained_exons 293-402 asmbl_30560 scaffold_2258 - intron_skips_exon 158-811 asmbl_30559 // Exon Skipping and Retention # skipped_exon 4088-5334 (orient:-) max_ev_support = 2 # retained_exon 5060-5089 (orient:-) max_ev_support = 2 scaffold_228 - retained_exons 5060-5089 asmbl_30564 scaffold_228 - intron_skips_exon 4088-5334 asmbl_30563 // Retained and Spliced Intron # retained_intron 245837-246226 (orient:-) max_ev_support = 2 # spliced_intron 245837-246226 (orient:-) max_ev_support = 2 scaffold_23 - intron 245837-246226 asmbl_30570 scaffold_23 - retained_intron 245837-246226 asmbl_30569 // Retained and Spliced Intron # retained_intron 248951-249926 (orient:-) max_ev_support = 2 # spliced_intron 248951-249926 (orient:-) max_ev_support = 2 scaffold_23 - intron 248951-249926 asmbl_30571 scaffold_23 - retained_intron 248951-249926 asmbl_30572 // Retained and Spliced Intron # retained_intron 362282-362408 (orient:-) max_ev_support = 2 # spliced_intron 362282-362408 (orient:-) max_ev_support = 1 scaffold_23 - intron 362282-362408 asmbl_30595 scaffold_23 - retained_intron 362282-362408 asmbl_30591,asmbl_30592,asmbl_30594,asmbl_30598,asmbl_30600 // Retained and Spliced Intron # retained_intron 362285-362464 (orient:-) max_ev_support = 2 # spliced_intron 362285-362464 (orient:-) max_ev_support = 3 scaffold_23 - intron 362285-362464 asmbl_30590,asmbl_30597 scaffold_23 - retained_intron 362285-362464 asmbl_30591,asmbl_30592,asmbl_30594,asmbl_30598,asmbl_30600 // Retained and Spliced Intron # retained_intron 811002-811092 (orient:-) max_ev_support = 2 # spliced_intron 811002-811092 (orient:-) max_ev_support = 2 scaffold_23 - intron 811002-811092 asmbl_30608 scaffold_23 - retained_intron 811002-811092 asmbl_30607 // Retained and Spliced Intron # retained_intron 1399387-1399546 (orient:-) max_ev_support = 2 # spliced_intron 1399387-1399546 (orient:-) max_ev_support = 2 scaffold_23 - intron 1399387-1399546 asmbl_30640 scaffold_23 - retained_intron 1399387-1399546 asmbl_30641 // Retained and Spliced Intron # retained_intron 1514785-1514962 (orient:-) max_ev_support = 1 # spliced_intron 1514785-1514962 (orient:-) max_ev_support = 2 scaffold_23 - intron 1514785-1514962 asmbl_30655 scaffold_23 - retained_intron 1514785-1514962 asmbl_30657 // Retained and Spliced Intron # retained_intron 2016514-2016841 (orient:-) max_ev_support = 2 # spliced_intron 2016514-2016841 (orient:-) max_ev_support = 1 scaffold_23 - intron 2016514-2016841 asmbl_30683 scaffold_23 - retained_intron 2016514-2016841 asmbl_30682 // Retained and Spliced Intron # retained_intron 2032895-2033003 (orient:-) max_ev_support = 2 # spliced_intron 2032895-2033003 (orient:-) max_ev_support = 1 scaffold_23 - intron 2032895-2033003 asmbl_30690 scaffold_23 - retained_intron 2032895-2033003 asmbl_30689 // Retained and Spliced Intron # retained_intron 2126799-2127196 (orient:-) max_ev_support = 3 # spliced_intron 2126799-2127196 (orient:-) max_ev_support = 3 scaffold_23 - intron 2126799-2127196 asmbl_30692,asmbl_30693 scaffold_23 - retained_intron 2126799-2127196 asmbl_30691 // Retained and Spliced Intron # retained_intron 2127756-2128017 (orient:-) max_ev_support = 2 # spliced_intron 2127756-2128017 (orient:-) max_ev_support = 3 scaffold_23 - intron 2127756-2128017 asmbl_30691,asmbl_30692 scaffold_23 - retained_intron 2127756-2128017 asmbl_30693 // Retained and Spliced Intron # retained_intron 2151002-2151100 (orient:-) max_ev_support = 2 # spliced_intron 2151002-2151100 (orient:-) max_ev_support = 2 scaffold_23 - intron 2151002-2151100 asmbl_30696,asmbl_30698 scaffold_23 - retained_intron 2151002-2151100 asmbl_30697 // Retained and Spliced Intron # retained_intron 2164190-2164417 (orient:-) max_ev_support = 1 # spliced_intron 2164190-2164417 (orient:-) max_ev_support = 1 scaffold_23 - intron 2164190-2164417 asmbl_30701 scaffold_23 - retained_intron 2164190-2164417 asmbl_30700 // Retained and Spliced Intron # retained_intron 2164879-2165545 (orient:-) max_ev_support = 1 # spliced_intron 2164879-2165545 (orient:-) max_ev_support = 1 scaffold_23 - intron 2164879-2165545 asmbl_30701 scaffold_23 - retained_intron 2164879-2165545 asmbl_30700,asmbl_30702 // Retained and Spliced Intron # retained_intron 2163935-2164106 (orient:-) max_ev_support = 1 # spliced_intron 2163935-2164106 (orient:-) max_ev_support = 1 scaffold_23 - intron 2163935-2164106 asmbl_30700 scaffold_23 - retained_intron 2163935-2164106 asmbl_30701 // Retained and Spliced Intron # retained_intron 2164596-2164823 (orient:-) max_ev_support = 1 # spliced_intron 2164596-2164823 (orient:-) max_ev_support = 1 scaffold_23 - intron 2164596-2164823 asmbl_30700,asmbl_30701 scaffold_23 - retained_intron 2164596-2164823 asmbl_30702 // Retained and Spliced Intron # retained_intron 2197978-2198128 (orient:-) max_ev_support = 2 # spliced_intron 2197978-2198128 (orient:-) max_ev_support = 3 scaffold_23 - intron 2197978-2198128 asmbl_30704,asmbl_30705 scaffold_23 - retained_intron 2197978-2198128 asmbl_30706 // Exon Skipping and Retention # skipped_exon 2207435-2208939 (orient:-) max_ev_support = 1 # retained_exon 2207677-2207796 (orient:-) max_ev_support = 1 scaffold_23 - retained_exons 2207677-2207796 asmbl_30712 scaffold_23 - intron_skips_exon 2207435-2208939 asmbl_30716,asmbl_30717 // Exon Skipping and Retention # skipped_exon 2207980-2209572 (orient:-) max_ev_support = 1 # retained_exon 2209153-2209242 (orient:-) max_ev_support = 1 scaffold_23 - retained_exons 2209153-2209242 asmbl_30712,asmbl_30713 scaffold_23 - intron_skips_exon 2207980-2209572 asmbl_30714 // Exon Skipping and Retention # skipped_exon 2220486-2222192 (orient:-) max_ev_support = 1 # retained_exon 2220592-2220673 (orient:-) max_ev_support = 1 scaffold_23 - retained_exons 2220592-2220673 asmbl_30713 scaffold_23 - intron_skips_exon 2220486-2222192 asmbl_30712,asmbl_30714,asmbl_30716 // Exon Skipping and Retention # skipped_exon 2207797-2209152 (orient:-) max_ev_support = 1 # retained_exon 2207890-2207979 (orient:-) max_ev_support = 1 scaffold_23 - retained_exons 2207890-2207979 asmbl_30714 scaffold_23 - intron_skips_exon 2207797-2209152 asmbl_30712 // Exon Skipping and Retention # skipped_exon 2207890-2209152 (orient:-) max_ev_support = 1 # retained_exon 2208940-2209059 (orient:-) max_ev_support = 1 scaffold_23 - retained_exons 2208940-2209059 asmbl_30716,asmbl_30717 scaffold_23 - intron_skips_exon 2207890-2209152 asmbl_30713 // Retained and Spliced Intron # retained_intron 2326610-2326740 (orient:-) max_ev_support = 3 # spliced_intron 2326610-2326740 (orient:-) max_ev_support = 1 scaffold_23 - intron 2326610-2326740 asmbl_30734 scaffold_23 - retained_intron 2326610-2326740 asmbl_30733 // Retained and Spliced Intron # retained_intron 2585757-2586468 (orient:-) max_ev_support = 3 # spliced_intron 2585757-2586468 (orient:-) max_ev_support = 1 scaffold_23 - intron 2585757-2586468 asmbl_30745 scaffold_23 - retained_intron 2585757-2586468 asmbl_30743,asmbl_30746 // Retained and Spliced Intron # retained_intron 2585757-2588165 (orient:-) max_ev_support = 4 # spliced_intron 2585757-2588165 (orient:-) max_ev_support = 2 scaffold_23 - intron 2585757-2588165 asmbl_30744 scaffold_23 - retained_intron 2585757-2588165 asmbl_30743 // Retained and Spliced Intron # retained_intron 2585219-2585676 (orient:-) max_ev_support = 1 # spliced_intron 2585219-2585676 (orient:-) max_ev_support = 3 scaffold_23 - intron 2585219-2585676 asmbl_30743,asmbl_30744,asmbl_30745 scaffold_23 - retained_intron 2585219-2585676 asmbl_30746 // Retained and Spliced Intron # retained_intron 2604317-2604475 (orient:-) max_ev_support = 1 # spliced_intron 2604317-2604475 (orient:-) max_ev_support = 2 scaffold_23 - intron 2604317-2604475 asmbl_30750 scaffold_23 - retained_intron 2604317-2604475 asmbl_30751 // Exon Skipping and Retention # skipped_exon 2615438-2616744 (orient:-) max_ev_support = 1 # retained_exon 2615904-2615926 (orient:-) max_ev_support = 2 scaffold_23 - retained_exons 2615904-2615926 asmbl_30752,asmbl_30753,asmbl_30754 scaffold_23 - intron_skips_exon 2615438-2616744 asmbl_30756 // Retained and Spliced Intron # retained_intron 2608885-2609300 (orient:-) max_ev_support = 1 # spliced_intron 2608885-2609300 (orient:-) max_ev_support = 2 scaffold_23 - intron 2608885-2609300 asmbl_30752,asmbl_30755,asmbl_30756 scaffold_23 - retained_intron 2608885-2609300 asmbl_30754 // Retained and Spliced Intron # retained_intron 2610389-2611916 (orient:-) max_ev_support = 1 # spliced_intron 2610389-2611916 (orient:-) max_ev_support = 2 scaffold_23 - intron 2610389-2611916 asmbl_30752,asmbl_30754,asmbl_30756 scaffold_23 - retained_intron 2610389-2611916 asmbl_30755 // Retained and Spliced Intron # retained_intron 2992336-2992464 (orient:-) max_ev_support = 1 # spliced_intron 2992336-2992464 (orient:-) max_ev_support = 1 scaffold_23 - intron 2992336-2992464 asmbl_30772 scaffold_23 - retained_intron 2992336-2992464 asmbl_30773 // Retained and Spliced Intron # retained_intron 3233100-3233254 (orient:-) max_ev_support = 2 # spliced_intron 3233100-3233254 (orient:-) max_ev_support = 2 scaffold_23 - intron 3233100-3233254 asmbl_30787,asmbl_30789,asmbl_30790 scaffold_23 - retained_intron 3233100-3233254 asmbl_30786 // Exon Skipping and Retention # skipped_exon 3233360-3234446 (orient:-) max_ev_support = 1 # retained_exon 3233592-3233764 (orient:-) max_ev_support = 2 scaffold_23 - retained_exons 3233592-3233764 asmbl_30787 scaffold_23 - intron_skips_exon 3233360-3234446 asmbl_30790 // Exon Skipping and Retention # skipped_exon 3447214-3449029 (orient:-) max_ev_support = 1 # retained_exon 3448205-3448277 (orient:-) max_ev_support = 2 scaffold_23 - retained_exons 3448205-3448277 asmbl_30793 scaffold_23 - intron_skips_exon 3447214-3449029 asmbl_30794 // Retained and Spliced Intron # retained_intron 3510274-3510858 (orient:-) max_ev_support = 4 # spliced_intron 3510274-3510858 (orient:-) max_ev_support = 2 scaffold_23 - intron 3510274-3510858 asmbl_30802,asmbl_30805 scaffold_23 - retained_intron 3510274-3510858 asmbl_30801 // Exon Skipping and Retention # skipped_exon 4099715-4100533 (orient:-) max_ev_support = 1 # retained_exon 4100078-4100213 (orient:-) max_ev_support = 1 scaffold_23 - retained_exons 4100078-4100213 asmbl_30831 scaffold_23 - intron_skips_exon 4099715-4100533 asmbl_30833 // Exon Skipping and Retention # skipped_exon 4099715-4101045 (orient:-) max_ev_support = 1 # retained_exon 4100078-4100716 (orient:-) max_ev_support = 1 scaffold_23 - retained_exons 4100078-4100213,4100534-4100716 asmbl_30831 scaffold_23 - intron_skips_exon 4099715-4101045 asmbl_30832 // Exon Skipping and Retention # skipped_exon 4100717-4102604 (orient:-) max_ev_support = 1 # retained_exon 4101046-4101228 (orient:-) max_ev_support = 1 scaffold_23 - retained_exons 4101046-4101228 asmbl_30832 scaffold_23 - intron_skips_exon 4100717-4102604 asmbl_30831,asmbl_30833 // Exon Skipping and Retention # skipped_exon 4226097-4226699 (orient:-) max_ev_support = 1 # retained_exon 4226413-4226552 (orient:-) max_ev_support = 2 scaffold_23 - retained_exons 4226413-4226552 asmbl_30847,asmbl_30848,asmbl_30849,asmbl_30852,asmbl_30853 scaffold_23 - intron_skips_exon 4226097-4226699 asmbl_30850 // Exon Skipping and Retention # skipped_exon 4228322-4229663 (orient:-) max_ev_support = 2 # retained_exon 4228479-4229383 (orient:-) max_ev_support = 1 scaffold_23 - retained_exons 4228479-4229383 asmbl_30849 scaffold_23 - intron_skips_exon 4228322-4229663 asmbl_30848,asmbl_30852 // Exon Skipping and Retention # skipped_exon 4321528-4322836 (orient:-) max_ev_support = 2 # retained_exon 4322149-4322192 (orient:-) max_ev_support = 1 scaffold_23 - retained_exons 4322149-4322192 asmbl_30860 scaffold_23 - intron_skips_exon 4321528-4322836 asmbl_30859 // Retained and Spliced Intron # retained_intron 4449320-4449423 (orient:-) max_ev_support = 3 # spliced_intron 4449320-4449423 (orient:-) max_ev_support = 3 scaffold_23 - intron 4449320-4449423 asmbl_30866,asmbl_30869 scaffold_23 - retained_intron 4449320-4449423 asmbl_30865,asmbl_30867,asmbl_30870 // Retained and Spliced Intron # retained_intron 4449748-4450584 (orient:-) max_ev_support = 2 # spliced_intron 4449748-4450584 (orient:-) max_ev_support = 3 scaffold_23 - intron 4449748-4450584 asmbl_30867 scaffold_23 - retained_intron 4449748-4450584 asmbl_30868,asmbl_30869 // Retained and Spliced Intron # retained_intron 4449754-4449915 (orient:-) max_ev_support = 2 # spliced_intron 4449754-4449915 (orient:-) max_ev_support = 3 scaffold_23 - intron 4449754-4449915 asmbl_30865 scaffold_23 - retained_intron 4449754-4449915 asmbl_30868,asmbl_30869 // Retained and Spliced Intron # retained_intron 4449754-4450584 (orient:-) max_ev_support = 2 # spliced_intron 4449754-4450584 (orient:-) max_ev_support = 3 scaffold_23 - intron 4449754-4450584 asmbl_30866,asmbl_30870 scaffold_23 - retained_intron 4449754-4450584 asmbl_30868,asmbl_30869 // Exon Skipping and Retention # skipped_exon 5078954-5081541 (orient:-) max_ev_support = 2 # retained_exon 5080495-5080566 (orient:-) max_ev_support = 2 scaffold_23 - retained_exons 5080495-5080566 asmbl_30880 scaffold_23 - intron_skips_exon 5078954-5081541 asmbl_30881 // Retained and Spliced Intron # retained_intron 5182962-5183052 (orient:-) max_ev_support = 2 # spliced_intron 5182962-5183052 (orient:-) max_ev_support = 1 scaffold_23 - intron 5182962-5183052 asmbl_30896 scaffold_23 - retained_intron 5182962-5183052 asmbl_30895 // Retained and Spliced Intron # retained_intron 5339139-5339871 (orient:-) max_ev_support = 2 # spliced_intron 5339139-5339871 (orient:-) max_ev_support = 1 scaffold_23 - intron 5339139-5339871 asmbl_30908,asmbl_30913 scaffold_23 - retained_intron 5339139-5339871 asmbl_30907,asmbl_30910,asmbl_30911,asmbl_30912 // Retained and Spliced Intron # retained_intron 5339139-5340317 (orient:-) max_ev_support = 2 # spliced_intron 5339139-5340317 (orient:-) max_ev_support = 2 scaffold_23 - intron 5339139-5340317 asmbl_30906,asmbl_30909 scaffold_23 - retained_intron 5339139-5340317 asmbl_30907,asmbl_30910,asmbl_30911,asmbl_30912 // Retained and Spliced Intron # retained_intron 5340412-5340615 (orient:-) max_ev_support = 2 # spliced_intron 5340412-5340615 (orient:-) max_ev_support = 2 scaffold_23 - intron 5340412-5340615 asmbl_30906,asmbl_30908,asmbl_30909,asmbl_30910,asmbl_30912 scaffold_23 - retained_intron 5340412-5340615 asmbl_30907,asmbl_30911,asmbl_30913 // Retained and Spliced Intron # retained_intron 5337942-5338313 (orient:-) max_ev_support = 1 # spliced_intron 5337942-5338313 (orient:-) max_ev_support = 2 scaffold_23 - intron 5337942-5338313 asmbl_30906,asmbl_30908,asmbl_30910,asmbl_30911 scaffold_23 - retained_intron 5337942-5338313 asmbl_30909 // Exon Skipping and Retention # skipped_exon 5617751-5620236 (orient:-) max_ev_support = 2 # retained_exon 5618925-5619884 (orient:-) max_ev_support = 2 scaffold_23 - retained_exons 5618925-5619884 asmbl_30926 scaffold_23 - intron_skips_exon 5617751-5620236 asmbl_30925,asmbl_30930 // Exon Skipping and Retention # skipped_exon 5617751-5620236 (orient:-) max_ev_support = 2 # retained_exon 5618925-5619809 (orient:-) max_ev_support = 2 scaffold_23 - retained_exons 5618925-5619809 asmbl_30927 scaffold_23 - intron_skips_exon 5617751-5620236 asmbl_30925,asmbl_30930 // Retained and Spliced Intron # retained_intron 5709650-5709748 (orient:-) max_ev_support = 2 # spliced_intron 5709650-5709748 (orient:-) max_ev_support = 1 scaffold_23 - intron 5709650-5709748 asmbl_30938 scaffold_23 - retained_intron 5709650-5709748 asmbl_30937 // Exon Skipping and Retention # skipped_exon 5764489-5766611 (orient:-) max_ev_support = 3 # retained_exon 5765227-5765316 (orient:-) max_ev_support = 4 scaffold_23 - retained_exons 5765227-5765316 asmbl_30941 scaffold_23 - intron_skips_exon 5764489-5766611 asmbl_30942 // Retained and Spliced Intron # retained_intron 5849629-5849725 (orient:-) max_ev_support = 2 # spliced_intron 5849629-5849725 (orient:-) max_ev_support = 3 scaffold_23 - intron 5849629-5849725 asmbl_30949 scaffold_23 - retained_intron 5849629-5849725 asmbl_30950 // Exon Skipping and Retention # skipped_exon 5862921-5863836 (orient:-) max_ev_support = 2 # retained_exon 5863162-5863232 (orient:-) max_ev_support = 3 scaffold_23 - retained_exons 5863162-5863232 asmbl_30951 scaffold_23 - intron_skips_exon 5862921-5863836 asmbl_30952 // Retained and Spliced Intron # retained_intron 5861645-5861736 (orient:-) max_ev_support = 2 # spliced_intron 5861645-5861736 (orient:-) max_ev_support = 3 scaffold_23 - intron 5861645-5861736 asmbl_30951,asmbl_30952 scaffold_23 - retained_intron 5861645-5861736 asmbl_30953 // Retained and Spliced Intron # retained_intron 6289651-6289837 (orient:-) max_ev_support = 3 # spliced_intron 6289651-6289837 (orient:-) max_ev_support = 3 scaffold_23 - intron 6289651-6289837 asmbl_30968,asmbl_30969,asmbl_30972 scaffold_23 - retained_intron 6289651-6289837 asmbl_30967,asmbl_30970,asmbl_30971,asmbl_30973,asmbl_30974 // Retained and Spliced Intron # retained_intron 6290063-6290359 (orient:-) max_ev_support = 3 # spliced_intron 6290063-6290359 (orient:-) max_ev_support = 3 scaffold_23 - intron 6290063-6290359 asmbl_30968,asmbl_30971,asmbl_30972,asmbl_30973,asmbl_30974 scaffold_23 - retained_intron 6290063-6290359 asmbl_30967,asmbl_30969,asmbl_30970 // Retained and Spliced Intron # retained_intron 6290510-6290714 (orient:-) max_ev_support = 3 # spliced_intron 6290510-6290714 (orient:-) max_ev_support = 3 scaffold_23 - intron 6290510-6290714 asmbl_30968,asmbl_30971,asmbl_30972,asmbl_30973,asmbl_30974 scaffold_23 - retained_intron 6290510-6290714 asmbl_30967,asmbl_30969,asmbl_30970 // Retained and Spliced Intron # retained_intron 6290835-6290991 (orient:-) max_ev_support = 3 # spliced_intron 6290835-6290991 (orient:-) max_ev_support = 2 scaffold_23 - intron 6290835-6290991 asmbl_30972,asmbl_30974 scaffold_23 - retained_intron 6290835-6290991 asmbl_30967,asmbl_30969,asmbl_30970 // Retained and Spliced Intron # retained_intron 6290838-6290991 (orient:-) max_ev_support = 3 # spliced_intron 6290838-6290991 (orient:-) max_ev_support = 3 scaffold_23 - intron 6290838-6290991 asmbl_30968,asmbl_30971,asmbl_30973 scaffold_23 - retained_intron 6290838-6290991 asmbl_30967,asmbl_30969,asmbl_30970 // Retained and Spliced Intron # retained_intron 6291131-6291893 (orient:-) max_ev_support = 3 # spliced_intron 6291131-6291893 (orient:-) max_ev_support = 3 scaffold_23 - intron 6291131-6291893 asmbl_30968,asmbl_30971,asmbl_30973,asmbl_30974 scaffold_23 - retained_intron 6291131-6291893 asmbl_30967,asmbl_30969,asmbl_30970,asmbl_30972 // Retained and Spliced Intron # retained_intron 6289122-6289248 (orient:-) max_ev_support = 2 # spliced_intron 6289122-6289248 (orient:-) max_ev_support = 3 scaffold_23 - intron 6289122-6289248 asmbl_30967,asmbl_30968,asmbl_30969,asmbl_30971,asmbl_30972 scaffold_23 - retained_intron 6289122-6289248 asmbl_30970,asmbl_30973,asmbl_30974 // Retained and Spliced Intron # retained_intron 6289367-6289481 (orient:-) max_ev_support = 2 # spliced_intron 6289367-6289481 (orient:-) max_ev_support = 3 scaffold_23 - intron 6289367-6289481 asmbl_30967,asmbl_30968,asmbl_30969,asmbl_30971,asmbl_30972 scaffold_23 - retained_intron 6289367-6289481 asmbl_30970,asmbl_30973,asmbl_30974 // Retained and Spliced Intron # retained_intron 6854401-6855600 (orient:-) max_ev_support = 1 # spliced_intron 6854401-6855600 (orient:-) max_ev_support = 1 scaffold_23 - intron 6854401-6855600 asmbl_30982,asmbl_30983 scaffold_23 - retained_intron 6854401-6855600 asmbl_30984 // Exon Skipping and Retention # skipped_exon 6988677-6989115 (orient:-) max_ev_support = 1 # retained_exon 6988881-6988988 (orient:-) max_ev_support = 2 scaffold_23 - retained_exons 6988881-6988988 asmbl_30996,asmbl_30997 scaffold_23 - intron_skips_exon 6988677-6989115 asmbl_30998 // Retained and Spliced Intron # retained_intron 7004912-7004953 (orient:-) max_ev_support = 2 # spliced_intron 7004912-7004953 (orient:-) max_ev_support = 1 scaffold_23 - intron 7004912-7004953 asmbl_31006 scaffold_23 - retained_intron 7004912-7004953 asmbl_31004,asmbl_31005,asmbl_31007,asmbl_31008 // Retained and Spliced Intron # retained_intron 7005689-7006309 (orient:-) max_ev_support = 2 # spliced_intron 7005689-7006309 (orient:-) max_ev_support = 1 scaffold_23 - intron 7005689-7006309 asmbl_31004,asmbl_31006 scaffold_23 - retained_intron 7005689-7006309 asmbl_31007 // Retained and Spliced Intron # retained_intron 7005777-7005932 (orient:-) max_ev_support = 2 # spliced_intron 7005777-7005932 (orient:-) max_ev_support = 1 scaffold_23 - intron 7005777-7005932 asmbl_31005 scaffold_23 - retained_intron 7005777-7005932 asmbl_31007 // Retained and Spliced Intron # retained_intron 7005777-7006309 (orient:-) max_ev_support = 2 # spliced_intron 7005777-7006309 (orient:-) max_ev_support = 2 scaffold_23 - intron 7005777-7006309 asmbl_31008 scaffold_23 - retained_intron 7005777-7006309 asmbl_31007 // Retained and Spliced Intron # retained_intron 7044875-7045050 (orient:-) max_ev_support = 2 # spliced_intron 7044875-7045050 (orient:-) max_ev_support = 2 scaffold_23 - intron 7044875-7045050 asmbl_31012 scaffold_23 - retained_intron 7044875-7045050 asmbl_31013 // Retained and Spliced Intron # retained_intron 7045280-7045597 (orient:-) max_ev_support = 2 # spliced_intron 7045280-7045597 (orient:-) max_ev_support = 2 scaffold_23 - intron 7045280-7045597 asmbl_31012 scaffold_23 - retained_intron 7045280-7045597 asmbl_31013 // Exon Skipping and Retention # skipped_exon 7277470-7278108 (orient:-) max_ev_support = 1 # retained_exon 7277616-7277667 (orient:-) max_ev_support = 2 scaffold_23 - retained_exons 7277616-7277667 asmbl_31022,asmbl_31024,asmbl_31025,asmbl_31026 scaffold_23 - intron_skips_exon 7277470-7278108 asmbl_31021 // Exon Skipping and Retention # skipped_exon 7278968-7279762 (orient:-) max_ev_support = 1 # retained_exon 7279357-7279426 (orient:-) max_ev_support = 2 scaffold_23 - retained_exons 7279357-7279426 asmbl_31022 scaffold_23 - intron_skips_exon 7278968-7279762 asmbl_31026 // Retained and Spliced Intron # retained_intron 7281701-7281793 (orient:-) max_ev_support = 2 # spliced_intron 7281701-7281793 (orient:-) max_ev_support = 1 scaffold_23 - intron 7281701-7281793 asmbl_31026 scaffold_23 - retained_intron 7281701-7281793 asmbl_31022,asmbl_31024 // Retained and Spliced Intron # retained_intron 7281701-7281808 (orient:-) max_ev_support = 2 # spliced_intron 7281701-7281808 (orient:-) max_ev_support = 1 scaffold_23 - intron 7281701-7281808 asmbl_31025 scaffold_23 - retained_intron 7281701-7281808 asmbl_31022,asmbl_31024 // Retained and Spliced Intron # retained_intron 7279427-7279762 (orient:-) max_ev_support = 1 # spliced_intron 7279427-7279762 (orient:-) max_ev_support = 2 scaffold_23 - intron 7279427-7279762 asmbl_31022 scaffold_23 - retained_intron 7279427-7279762 asmbl_31024,asmbl_31025 // Exon Skipping and Retention # skipped_exon 7278221-7279356 (orient:-) max_ev_support = 2 # retained_exon 7278481-7278967 (orient:-) max_ev_support = 1 scaffold_23 - retained_exons 7278481-7278967 asmbl_31025,asmbl_31026 scaffold_23 - intron_skips_exon 7278221-7279356 asmbl_31022,asmbl_31024 // Exon Skipping and Retention # skipped_exon 7511956-7514060 (orient:-) max_ev_support = 2 # retained_exon 7512954-7513091 (orient:-) max_ev_support = 2 scaffold_23 - retained_exons 7512954-7513091 asmbl_31032 scaffold_23 - intron_skips_exon 7511956-7514060 asmbl_31033 // Exon Skipping and Retention # skipped_exon 7631700-7633531 (orient:-) max_ev_support = 2 # retained_exon 7632771-7632815 (orient:-) max_ev_support = 2 scaffold_23 - retained_exons 7632771-7632815 asmbl_31041 scaffold_23 - intron_skips_exon 7631700-7633531 asmbl_31040,asmbl_31043 // Exon Skipping and Retention # skipped_exon 7915714-7917467 (orient:-) max_ev_support = 1 # retained_exon 7915793-7916870 (orient:-) max_ev_support = 2 scaffold_23 - retained_exons 7915793-7915843,7916688-7916870 asmbl_31057 scaffold_23 - intron_skips_exon 7915714-7917467 asmbl_31060 // Retained and Spliced Intron # retained_intron 7915714-7915792 (orient:-) max_ev_support = 2 # spliced_intron 7915714-7915792 (orient:-) max_ev_support = 2 scaffold_23 - intron 7915714-7915792 asmbl_31057,asmbl_31058 scaffold_23 - retained_intron 7915714-7915792 asmbl_31061 // Retained and Spliced Intron # retained_intron 7938919-7939182 (orient:-) max_ev_support = 3 # spliced_intron 7938919-7939182 (orient:-) max_ev_support = 2 scaffold_23 - intron 7938919-7939182 asmbl_31065 scaffold_23 - retained_intron 7938919-7939182 asmbl_31064 // Exon Skipping and Retention # skipped_exon 7938919-7940270 (orient:-) max_ev_support = 1 # retained_exon 7939183-7940157 (orient:-) max_ev_support = 5 scaffold_23 - retained_exons 7939183-7940157 asmbl_31065 scaffold_23 - intron_skips_exon 7938919-7940270 asmbl_31066 // Exon Skipping and Retention # skipped_exon 8066122-8068406 (orient:-) max_ev_support = 2 # retained_exon 8066624-8066699 (orient:-) max_ev_support = 2 scaffold_23 - retained_exons 8066624-8066699 asmbl_31074 scaffold_23 - intron_skips_exon 8066122-8068406 asmbl_31073 // Retained and Spliced Intron # retained_intron 8125986-8126005 (orient:-) max_ev_support = 1 # spliced_intron 8125986-8126005 (orient:-) max_ev_support = 1 scaffold_23 - intron 8125986-8126005 asmbl_31079 scaffold_23 - retained_intron 8125986-8126005 asmbl_31078 // Exon Skipping and Retention # skipped_exon 9117592-9120056 (orient:-) max_ev_support = 1 # retained_exon 9119518-9119574 (orient:-) max_ev_support = 2 scaffold_23 - retained_exons 9119518-9119574 asmbl_31092 scaffold_23 - intron_skips_exon 9117592-9120056 asmbl_31093 // Retained and Spliced Intron # retained_intron 9517036-9517096 (orient:-) max_ev_support = 2 # spliced_intron 9517036-9517096 (orient:-) max_ev_support = 1 scaffold_23 - intron 9517036-9517096 asmbl_31102 scaffold_23 - retained_intron 9517036-9517096 asmbl_31101 // Retained and Spliced Intron # retained_intron 9518168-9518302 (orient:-) max_ev_support = 3 # spliced_intron 9518168-9518302 (orient:-) max_ev_support = 1 scaffold_23 - intron 9518168-9518302 asmbl_31105 scaffold_23 - retained_intron 9518168-9518302 asmbl_31104 // Retained and Spliced Intron # retained_intron 9951383-9951465 (orient:-) max_ev_support = 1 # spliced_intron 9951383-9951465 (orient:-) max_ev_support = 2 scaffold_23 - intron 9951383-9951465 asmbl_31114,asmbl_31115,asmbl_31116 scaffold_23 - retained_intron 9951383-9951465 asmbl_31117 // Retained and Spliced Intron # retained_intron 10131332-10131437 (orient:-) max_ev_support = 2 # spliced_intron 10131332-10131437 (orient:-) max_ev_support = 1 scaffold_23 - intron 10131332-10131437 asmbl_31125 scaffold_23 - retained_intron 10131332-10131437 asmbl_31124 // Exon Skipping and Retention # skipped_exon 10323621-10325802 (orient:-) max_ev_support = 2 # retained_exon 10323928-10324071 (orient:-) max_ev_support = 2 scaffold_23 - retained_exons 10323928-10324071 asmbl_31145 scaffold_23 - intron_skips_exon 10323621-10325802 asmbl_31144 // Retained and Spliced Intron # retained_intron 10909931-10909952 (orient:-) max_ev_support = 4 # spliced_intron 10909931-10909952 (orient:-) max_ev_support = 1 scaffold_23 - intron 10909931-10909952 asmbl_31171 scaffold_23 - retained_intron 10909931-10909952 asmbl_31169,asmbl_31170 // Retained and Spliced Intron # retained_intron 10910316-10910432 (orient:-) max_ev_support = 1 # spliced_intron 10910316-10910432 (orient:-) max_ev_support = 1 scaffold_23 - intron 10910316-10910432 asmbl_31169,asmbl_31171 scaffold_23 - retained_intron 10910316-10910432 asmbl_31170 // Retained and Spliced Intron # retained_intron 10938115-10938227 (orient:-) max_ev_support = 3 # spliced_intron 10938115-10938227 (orient:-) max_ev_support = 1 scaffold_23 - intron 10938115-10938227 asmbl_31177 scaffold_23 - retained_intron 10938115-10938227 asmbl_31176 // Retained and Spliced Intron # retained_intron 10938169-10938227 (orient:-) max_ev_support = 3 # spliced_intron 10938169-10938227 (orient:-) max_ev_support = 2 scaffold_23 - intron 10938169-10938227 asmbl_31179 scaffold_23 - retained_intron 10938169-10938227 asmbl_31176 // Retained and Spliced Intron # retained_intron 10981234-10981331 (orient:-) max_ev_support = 1 # spliced_intron 10981234-10981331 (orient:-) max_ev_support = 2 scaffold_23 - intron 10981234-10981331 asmbl_31183 scaffold_23 - retained_intron 10981234-10981331 asmbl_31184 // Retained and Spliced Intron # retained_intron 10990900-10990994 (orient:-) max_ev_support = 1 # spliced_intron 10990900-10990994 (orient:-) max_ev_support = 1 scaffold_23 - intron 10990900-10990994 asmbl_31187 scaffold_23 - retained_intron 10990900-10990994 asmbl_31188 // Retained and Spliced Intron # retained_intron 10990921-10990994 (orient:-) max_ev_support = 1 # spliced_intron 10990921-10990994 (orient:-) max_ev_support = 2 scaffold_23 - intron 10990921-10990994 asmbl_31185 scaffold_23 - retained_intron 10990921-10990994 asmbl_31188 // Retained and Spliced Intron # retained_intron 222857-223034 (orient:+) max_ev_support = 2 # spliced_intron 222857-223034 (orient:+) max_ev_support = 2 scaffold_23 + intron 222857-223034 asmbl_31289 scaffold_23 + retained_intron 222857-223034 asmbl_31288 // Retained and Spliced Intron # retained_intron 1458422-1458455 (orient:+) max_ev_support = 2 # spliced_intron 1458422-1458455 (orient:+) max_ev_support = 1 scaffold_23 + intron 1458422-1458455 asmbl_31327 scaffold_23 + retained_intron 1458422-1458455 asmbl_31326 // Retained and Spliced Intron # retained_intron 1682272-1682293 (orient:+) max_ev_support = 1 # spliced_intron 1682272-1682293 (orient:+) max_ev_support = 1 scaffold_23 + intron 1682272-1682293 asmbl_31350 scaffold_23 + retained_intron 1682272-1682293 asmbl_31351 // Retained and Spliced Intron # retained_intron 1741287-1741399 (orient:+) max_ev_support = 1 # spliced_intron 1741287-1741399 (orient:+) max_ev_support = 1 scaffold_23 + intron 1741287-1741399 asmbl_31353,asmbl_31354,asmbl_31355 scaffold_23 + retained_intron 1741287-1741399 asmbl_31352 // Retained and Spliced Intron # retained_intron 1739076-1739233 (orient:+) max_ev_support = 1 # spliced_intron 1739076-1739233 (orient:+) max_ev_support = 1 scaffold_23 + intron 1739076-1739233 asmbl_31352,asmbl_31353,asmbl_31355 scaffold_23 + retained_intron 1739076-1739233 asmbl_31354 // Exon Skipping and Retention # skipped_exon 1850325-1851476 (orient:+) max_ev_support = 1 # retained_exon 1850702-1850809 (orient:+) max_ev_support = 2 scaffold_23 + retained_exons 1850702-1850809 asmbl_31361 scaffold_23 + intron_skips_exon 1850325-1851476 asmbl_31362 // Exon Skipping and Retention # skipped_exon 1850810-1852793 (orient:+) max_ev_support = 2 # retained_exon 1851477-1851584 (orient:+) max_ev_support = 1 scaffold_23 + retained_exons 1851477-1851584 asmbl_31362 scaffold_23 + intron_skips_exon 1850810-1852793 asmbl_31361 // Retained and Spliced Intron # retained_intron 1992483-1992563 (orient:+) max_ev_support = 1 # spliced_intron 1992483-1992563 (orient:+) max_ev_support = 2 scaffold_23 + intron 1992483-1992563 asmbl_31367 scaffold_23 + retained_intron 1992483-1992563 asmbl_31368 // Retained and Spliced Intron # retained_intron 2039135-2039394 (orient:+) max_ev_support = 1 # spliced_intron 2039135-2039394 (orient:+) max_ev_support = 2 scaffold_23 + intron 2039135-2039394 asmbl_31373 scaffold_23 + retained_intron 2039135-2039394 asmbl_31374,asmbl_31375 // Retained and Spliced Intron # retained_intron 2038445-2038542 (orient:+) max_ev_support = 1 # spliced_intron 2038445-2038542 (orient:+) max_ev_support = 2 scaffold_23 + intron 2038445-2038542 asmbl_31373,asmbl_31374 scaffold_23 + retained_intron 2038445-2038542 asmbl_31375 // Retained and Spliced Intron # retained_intron 2038659-2038870 (orient:+) max_ev_support = 1 # spliced_intron 2038659-2038870 (orient:+) max_ev_support = 2 scaffold_23 + intron 2038659-2038870 asmbl_31373,asmbl_31374 scaffold_23 + retained_intron 2038659-2038870 asmbl_31375 // Retained and Spliced Intron # retained_intron 2038927-2039048 (orient:+) max_ev_support = 1 # spliced_intron 2038927-2039048 (orient:+) max_ev_support = 2 scaffold_23 + intron 2038927-2039048 asmbl_31373,asmbl_31374 scaffold_23 + retained_intron 2038927-2039048 asmbl_31375 // Retained and Spliced Intron # retained_intron 2160936-2161036 (orient:+) max_ev_support = 1 # spliced_intron 2160936-2161036 (orient:+) max_ev_support = 2 scaffold_23 + intron 2160936-2161036 asmbl_31377 scaffold_23 + retained_intron 2160936-2161036 asmbl_31378 // Retained and Spliced Intron # retained_intron 2305426-2306387 (orient:+) max_ev_support = 2 # spliced_intron 2305426-2306387 (orient:+) max_ev_support = 3 scaffold_23 + intron 2305426-2306387 asmbl_31385 scaffold_23 + retained_intron 2305426-2306387 asmbl_31386 // Retained and Spliced Intron # retained_intron 2315712-2315927 (orient:+) max_ev_support = 3 # spliced_intron 2315712-2315927 (orient:+) max_ev_support = 3 scaffold_23 + intron 2315712-2315927 asmbl_31390 scaffold_23 + retained_intron 2315712-2315927 asmbl_31391 // Exon Skipping and Retention # skipped_exon 2633997-2635130 (orient:+) max_ev_support = 1 # retained_exon 2634795-2634920 (orient:+) max_ev_support = 1 scaffold_23 + retained_exons 2634795-2634920 asmbl_31410,asmbl_31413,asmbl_31414 scaffold_23 + intron_skips_exon 2633997-2635130 asmbl_31411 // Retained and Spliced Intron # retained_intron 2647054-2647286 (orient:+) max_ev_support = 1 # spliced_intron 2647054-2647286 (orient:+) max_ev_support = 2 scaffold_23 + intron 2647054-2647286 asmbl_31416 scaffold_23 + retained_intron 2647054-2647286 asmbl_31418 // Exon Skipping and Retention # skipped_exon 2728397-2729974 (orient:+) max_ev_support = 2 # retained_exon 2728666-2728728 (orient:+) max_ev_support = 2 scaffold_23 + retained_exons 2728666-2728728 asmbl_31422 scaffold_23 + intron_skips_exon 2728397-2729974 asmbl_31421 // Exon Skipping and Retention # skipped_exon 3239279-3240880 (orient:+) max_ev_support = 1 # retained_exon 3239522-3240523 (orient:+) max_ev_support = 2 scaffold_23 + retained_exons 3239522-3239592,3239703-3239789,3239928-3240149,3240324-3240523 asmbl_31428,asmbl_31429 scaffold_23 + intron_skips_exon 3239279-3240880 asmbl_31430 // Exon Skipping and Retention # skipped_exon 3436537-3437379 (orient:+) max_ev_support = 1 # retained_exon 3436954-3437001 (orient:+) max_ev_support = 2 scaffold_23 + retained_exons 3436954-3437001 asmbl_31435 scaffold_23 + intron_skips_exon 3436537-3437379 asmbl_31436 // Retained and Spliced Intron # retained_intron 3573591-3574929 (orient:+) max_ev_support = 2 # spliced_intron 3573591-3574929 (orient:+) max_ev_support = 2 scaffold_23 + intron 3573591-3574929 asmbl_31442 scaffold_23 + retained_intron 3573591-3574929 asmbl_31444 // Retained and Spliced Intron # retained_intron 3622625-3622729 (orient:+) max_ev_support = 2 # spliced_intron 3622625-3622729 (orient:+) max_ev_support = 1 scaffold_23 + intron 3622625-3622729 asmbl_31456 scaffold_23 + retained_intron 3622625-3622729 asmbl_31455 // Retained and Spliced Intron # retained_intron 3655994-3656154 (orient:+) max_ev_support = 3 # spliced_intron 3655994-3656154 (orient:+) max_ev_support = 2 scaffold_23 + intron 3655994-3656154 asmbl_31462 scaffold_23 + retained_intron 3655994-3656154 asmbl_31461,asmbl_31463 // Retained and Spliced Intron # retained_intron 3656249-3656339 (orient:+) max_ev_support = 3 # spliced_intron 3656249-3656339 (orient:+) max_ev_support = 2 scaffold_23 + intron 3656249-3656339 asmbl_31462,asmbl_31463 scaffold_23 + retained_intron 3656249-3656339 asmbl_31461 // Retained and Spliced Intron # retained_intron 4167441-4167665 (orient:+) max_ev_support = 3 # spliced_intron 4167441-4167665 (orient:+) max_ev_support = 2 scaffold_23 + intron 4167441-4167665 asmbl_31489,asmbl_31490 scaffold_23 + retained_intron 4167441-4167665 asmbl_31488 // Retained and Spliced Intron # retained_intron 4314274-4314425 (orient:+) max_ev_support = 2 # spliced_intron 4314274-4314425 (orient:+) max_ev_support = 2 scaffold_23 + intron 4314274-4314425 asmbl_31495,asmbl_31497,asmbl_31499,asmbl_31501,asmbl_31502 scaffold_23 + retained_intron 4314274-4314425 asmbl_31496,asmbl_31498 // Retained and Spliced Intron # retained_intron 4315627-4315866 (orient:+) max_ev_support = 1 # spliced_intron 4315627-4315866 (orient:+) max_ev_support = 2 scaffold_23 + intron 4315627-4315866 asmbl_31499,asmbl_31501,asmbl_31502 scaffold_23 + retained_intron 4315627-4315866 asmbl_31496,asmbl_31498 // Retained and Spliced Intron # retained_intron 4315991-4316097 (orient:+) max_ev_support = 1 # spliced_intron 4315991-4316097 (orient:+) max_ev_support = 2 scaffold_23 + intron 4315991-4316097 asmbl_31498,asmbl_31499,asmbl_31502 scaffold_23 + retained_intron 4315991-4316097 asmbl_31496,asmbl_31501 // Retained and Spliced Intron # retained_intron 4311119-4313057 (orient:+) max_ev_support = 1 # spliced_intron 4311119-4313057 (orient:+) max_ev_support = 2 scaffold_23 + intron 4311119-4313057 asmbl_31496,asmbl_31498,asmbl_31499,asmbl_31501 scaffold_23 + retained_intron 4311119-4313057 asmbl_31497 // Retained and Spliced Intron # retained_intron 4312110-4313057 (orient:+) max_ev_support = 1 # spliced_intron 4312110-4313057 (orient:+) max_ev_support = 1 scaffold_23 + intron 4312110-4313057 asmbl_31495 scaffold_23 + retained_intron 4312110-4313057 asmbl_31497 // Retained and Spliced Intron # retained_intron 4316233-4316385 (orient:+) max_ev_support = 2 # spliced_intron 4316233-4316385 (orient:+) max_ev_support = 2 scaffold_23 + intron 4316233-4316385 asmbl_31496,asmbl_31498,asmbl_31499,asmbl_31501,asmbl_31502 scaffold_23 + retained_intron 4316233-4316385 asmbl_31500 // Retained and Spliced Intron # retained_intron 4316512-4316611 (orient:+) max_ev_support = 2 # spliced_intron 4316512-4316611 (orient:+) max_ev_support = 2 scaffold_23 + intron 4316512-4316611 asmbl_31498,asmbl_31499,asmbl_31502 scaffold_23 + retained_intron 4316512-4316611 asmbl_31500 // Retained and Spliced Intron # retained_intron 4900167-4900265 (orient:+) max_ev_support = 2 # spliced_intron 4900167-4900265 (orient:+) max_ev_support = 3 scaffold_23 + intron 4900167-4900265 asmbl_31532,asmbl_31533,asmbl_31536,asmbl_31537,asmbl_31538 scaffold_23 + retained_intron 4900167-4900265 asmbl_31534,asmbl_31535 // Retained and Spliced Intron # retained_intron 4899125-4899400 (orient:+) max_ev_support = 1 # spliced_intron 4899125-4899400 (orient:+) max_ev_support = 3 scaffold_23 + intron 4899125-4899400 asmbl_31532,asmbl_31533,asmbl_31537 scaffold_23 + retained_intron 4899125-4899400 asmbl_31536 // Retained and Spliced Intron # retained_intron 4899316-4899400 (orient:+) max_ev_support = 1 # spliced_intron 4899316-4899400 (orient:+) max_ev_support = 2 scaffold_23 + intron 4899316-4899400 asmbl_31534,asmbl_31538 scaffold_23 + retained_intron 4899316-4899400 asmbl_31536 // Exon Skipping and Retention # skipped_exon 4949839-4950422 (orient:+) max_ev_support = 3 # retained_exon 4950067-4950205 (orient:+) max_ev_support = 2 scaffold_23 + retained_exons 4950067-4950205 asmbl_31540 scaffold_23 + intron_skips_exon 4949839-4950422 asmbl_31539 // Retained and Spliced Intron # retained_intron 4950206-4950422 (orient:+) max_ev_support = 2 # spliced_intron 4950206-4950422 (orient:+) max_ev_support = 2 scaffold_23 + intron 4950206-4950422 asmbl_31540 scaffold_23 + retained_intron 4950206-4950422 asmbl_31541 // Retained and Spliced Intron # retained_intron 5303321-5303517 (orient:+) max_ev_support = 3 # spliced_intron 5303321-5303517 (orient:+) max_ev_support = 2 scaffold_23 + intron 5303321-5303517 asmbl_31558 scaffold_23 + retained_intron 5303321-5303517 asmbl_31554,asmbl_31555,asmbl_31556,asmbl_31557 // Retained and Spliced Intron # retained_intron 5303670-5303795 (orient:+) max_ev_support = 3 # spliced_intron 5303670-5303795 (orient:+) max_ev_support = 3 scaffold_23 + intron 5303670-5303795 asmbl_31555,asmbl_31557 scaffold_23 + retained_intron 5303670-5303795 asmbl_31554,asmbl_31556 // Exon Skipping and Retention # skipped_exon 5578234-5578816 (orient:+) max_ev_support = 2 # retained_exon 5578418-5578543 (orient:+) max_ev_support = 2 scaffold_23 + retained_exons 5578418-5578543 asmbl_31577,asmbl_31584 scaffold_23 + intron_skips_exon 5578234-5578816 asmbl_31578,asmbl_31579,asmbl_31580 // Retained and Spliced Intron # retained_intron 5583740-5583837 (orient:+) max_ev_support = 2 # spliced_intron 5583740-5583837 (orient:+) max_ev_support = 1 scaffold_23 + intron 5583740-5583837 asmbl_31590 scaffold_23 + retained_intron 5583740-5583837 asmbl_31587 // Exon Skipping and Retention # skipped_exon 5583740-5584093 (orient:+) max_ev_support = 3 # retained_exon 5583838-5583875 (orient:+) max_ev_support = 1 scaffold_23 + retained_exons 5583838-5583875 asmbl_31590 scaffold_23 + intron_skips_exon 5583740-5584093 asmbl_31586 // Exon Skipping and Retention # skipped_exon 5583740-5584101 (orient:+) max_ev_support = 1 # retained_exon 5583838-5583875 (orient:+) max_ev_support = 1 scaffold_23 + retained_exons 5583838-5583875 asmbl_31590 scaffold_23 + intron_skips_exon 5583740-5584101 asmbl_31589 // Retained and Spliced Intron # retained_intron 5732593-5732880 (orient:+) max_ev_support = 3 # spliced_intron 5732593-5732880 (orient:+) max_ev_support = 3 scaffold_23 + intron 5732593-5732880 asmbl_31593 scaffold_23 + retained_intron 5732593-5732880 asmbl_31594,asmbl_31595 // Retained and Spliced Intron # retained_intron 5851943-5852135 (orient:+) max_ev_support = 3 # spliced_intron 5851943-5852135 (orient:+) max_ev_support = 3 scaffold_23 + intron 5851943-5852135 asmbl_31600 scaffold_23 + retained_intron 5851943-5852135 asmbl_31601 // Exon Skipping and Retention # skipped_exon 5858438-5860167 (orient:+) max_ev_support = 3 # retained_exon 5859322-5859333 (orient:+) max_ev_support = 1 scaffold_23 + retained_exons 5859322-5859333 asmbl_31605 scaffold_23 + intron_skips_exon 5858438-5860167 asmbl_31604 // Retained and Spliced Intron # retained_intron 5864511-5864677 (orient:+) max_ev_support = 2 # spliced_intron 5864511-5864677 (orient:+) max_ev_support = 2 scaffold_23 + intron 5864511-5864677 asmbl_31606 scaffold_23 + retained_intron 5864511-5864677 asmbl_31607 // Exon Skipping and Retention # skipped_exon 6330942-6332799 (orient:+) max_ev_support = 2 # retained_exon 6331560-6332174 (orient:+) max_ev_support = 1 scaffold_23 + retained_exons 6331560-6332174 asmbl_31616 scaffold_23 + intron_skips_exon 6330942-6332799 asmbl_31613 // Retained and Spliced Intron # retained_intron 6633740-6633978 (orient:+) max_ev_support = 1 # spliced_intron 6633740-6633978 (orient:+) max_ev_support = 2 scaffold_23 + intron 6633740-6633978 asmbl_31634,asmbl_31637,asmbl_31638,asmbl_31639,asmbl_31640 scaffold_23 + retained_intron 6633740-6633978 asmbl_31636 // Retained and Spliced Intron # retained_intron 6634496-6634635 (orient:+) max_ev_support = 1 # spliced_intron 6634496-6634635 (orient:+) max_ev_support = 2 scaffold_23 + intron 6634496-6634635 asmbl_31634,asmbl_31637,asmbl_31638,asmbl_31639,asmbl_31640 scaffold_23 + retained_intron 6634496-6634635 asmbl_31636 // Retained and Spliced Intron # retained_intron 6632390-6632499 (orient:+) max_ev_support = 1 # spliced_intron 6632390-6632499 (orient:+) max_ev_support = 2 scaffold_23 + intron 6632390-6632499 asmbl_31634,asmbl_31636,asmbl_31638,asmbl_31639,asmbl_31640 scaffold_23 + retained_intron 6632390-6632499 asmbl_31637 // Retained and Spliced Intron # retained_intron 6632661-6632755 (orient:+) max_ev_support = 1 # spliced_intron 6632661-6632755 (orient:+) max_ev_support = 2 scaffold_23 + intron 6632661-6632755 asmbl_31634,asmbl_31636,asmbl_31637,asmbl_31639 scaffold_23 + retained_intron 6632661-6632755 asmbl_31638,asmbl_31640 // Retained and Spliced Intron # retained_intron 6632892-6633001 (orient:+) max_ev_support = 1 # spliced_intron 6632892-6633001 (orient:+) max_ev_support = 2 scaffold_23 + intron 6632892-6633001 asmbl_31634,asmbl_31636,asmbl_31637,asmbl_31638,asmbl_31639 scaffold_23 + retained_intron 6632892-6633001 asmbl_31640 // Retained and Spliced Intron # retained_intron 6688346-6688422 (orient:+) max_ev_support = 1 # spliced_intron 6688346-6688422 (orient:+) max_ev_support = 1 scaffold_23 + intron 6688346-6688422 asmbl_31649 scaffold_23 + retained_intron 6688346-6688422 asmbl_31647,asmbl_31648 // Retained and Spliced Intron # retained_intron 6778984-6779031 (orient:+) max_ev_support = 1 # spliced_intron 6778984-6779031 (orient:+) max_ev_support = 1 scaffold_23 + intron 6778984-6779031 asmbl_31654 scaffold_23 + retained_intron 6778984-6779031 asmbl_31655 // Exon Skipping and Retention # skipped_exon 7235072-7235671 (orient:+) max_ev_support = 1 # retained_exon 7235231-7235352 (orient:+) max_ev_support = 1 scaffold_23 + retained_exons 7235231-7235352 asmbl_31682,asmbl_31683 scaffold_23 + intron_skips_exon 7235072-7235671 asmbl_31684 // Retained and Spliced Intron # retained_intron 7388982-7389133 (orient:+) max_ev_support = 2 # spliced_intron 7388982-7389133 (orient:+) max_ev_support = 1 scaffold_23 + intron 7388982-7389133 asmbl_31691 scaffold_23 + retained_intron 7388982-7389133 asmbl_31690 // Exon Skipping and Retention # skipped_exon 7661718-7664117 (orient:+) max_ev_support = 1 # retained_exon 7662287-7662625 (orient:+) max_ev_support = 1 scaffold_23 + retained_exons 7662287-7662625 asmbl_31706 scaffold_23 + intron_skips_exon 7661718-7664117 asmbl_31708 // Exon Skipping and Retention # skipped_exon 7683923-7685948 (orient:+) max_ev_support = 1 # retained_exon 7684372-7685166 (orient:+) max_ev_support = 3 scaffold_23 + retained_exons 7684372-7684483,7685005-7685166 asmbl_31714,asmbl_31715 scaffold_23 + intron_skips_exon 7683923-7685948 asmbl_31719 // Retained and Spliced Intron # retained_intron 7686045-7686483 (orient:+) max_ev_support = 2 # spliced_intron 7686045-7686483 (orient:+) max_ev_support = 3 scaffold_23 + intron 7686045-7686483 asmbl_31715,asmbl_31718 scaffold_23 + retained_intron 7686045-7686483 asmbl_31717,asmbl_31719 // Retained and Spliced Intron # retained_intron 7686045-7687381 (orient:+) max_ev_support = 2 # spliced_intron 7686045-7687381 (orient:+) max_ev_support = 3 scaffold_23 + intron 7686045-7687381 asmbl_31713,asmbl_31714 scaffold_23 + retained_intron 7686045-7687381 asmbl_31717,asmbl_31719 // Retained and Spliced Intron # retained_intron 7701820-7701972 (orient:+) max_ev_support = 1 # spliced_intron 7701820-7701972 (orient:+) max_ev_support = 1 scaffold_23 + intron 7701820-7701972 asmbl_31723 scaffold_23 + retained_intron 7701820-7701972 asmbl_31724,asmbl_31725 // Retained and Spliced Intron # retained_intron 7982612-7982719 (orient:+) max_ev_support = 1 # spliced_intron 7982612-7982719 (orient:+) max_ev_support = 2 scaffold_23 + intron 7982612-7982719 asmbl_31745 scaffold_23 + retained_intron 7982612-7982719 asmbl_31747 // Retained and Spliced Intron # retained_intron 7982619-7982719 (orient:+) max_ev_support = 1 # spliced_intron 7982619-7982719 (orient:+) max_ev_support = 1 scaffold_23 + intron 7982619-7982719 asmbl_31746 scaffold_23 + retained_intron 7982619-7982719 asmbl_31747 // Retained and Spliced Intron # retained_intron 7984376-7984498 (orient:+) max_ev_support = 1 # spliced_intron 7984376-7984498 (orient:+) max_ev_support = 2 scaffold_23 + intron 7984376-7984498 asmbl_31745,asmbl_31746,asmbl_31747 scaffold_23 + retained_intron 7984376-7984498 asmbl_31748 // Exon Skipping and Retention # skipped_exon 8102387-8103421 (orient:+) max_ev_support = 1 # retained_exon 8102805-8102862 (orient:+) max_ev_support = 1 scaffold_23 + retained_exons 8102805-8102862 asmbl_31758 scaffold_23 + intron_skips_exon 8102387-8103421 asmbl_31759 // Exon Skipping and Retention # skipped_exon 8101894-8102804 (orient:+) max_ev_support = 1 # retained_exon 8102329-8102386 (orient:+) max_ev_support = 1 scaffold_23 + retained_exons 8102329-8102386 asmbl_31759 scaffold_23 + intron_skips_exon 8101894-8102804 asmbl_31758 // Retained and Spliced Intron # retained_intron 8104276-8104414 (orient:+) max_ev_support = 1 # spliced_intron 8104276-8104414 (orient:+) max_ev_support = 1 scaffold_23 + intron 8104276-8104414 asmbl_31758,asmbl_31759 scaffold_23 + retained_intron 8104276-8104414 asmbl_31760 // Exon Skipping and Retention # skipped_exon 8199021-8199981 (orient:+) max_ev_support = 1 # retained_exon 8199528-8199703 (orient:+) max_ev_support = 2 scaffold_23 + retained_exons 8199528-8199703 asmbl_31763,asmbl_31767,asmbl_31768 scaffold_23 + intron_skips_exon 8199021-8199981 asmbl_31766 // Retained and Spliced Intron # retained_intron 8812037-8812206 (orient:+) max_ev_support = 1 # spliced_intron 8812037-8812206 (orient:+) max_ev_support = 1 scaffold_23 + intron 8812037-8812206 asmbl_31785 scaffold_23 + retained_intron 8812037-8812206 asmbl_31784 // Retained and Spliced Intron # retained_intron 8843715-8843755 (orient:+) max_ev_support = 2 # spliced_intron 8843715-8843755 (orient:+) max_ev_support = 1 scaffold_23 + intron 8843715-8843755 asmbl_31788 scaffold_23 + retained_intron 8843715-8843755 asmbl_31787 // Exon Skipping and Retention # skipped_exon 9329762-9331870 (orient:+) max_ev_support = 1 # retained_exon 9330149-9330175 (orient:+) max_ev_support = 1 scaffold_23 + retained_exons 9330149-9330175 asmbl_31791 scaffold_23 + intron_skips_exon 9329762-9331870 asmbl_31790 // Retained and Spliced Intron # retained_intron 9425520-9425631 (orient:+) max_ev_support = 3 # spliced_intron 9425520-9425631 (orient:+) max_ev_support = 1 scaffold_23 + intron 9425520-9425631 asmbl_31794,asmbl_31795 scaffold_23 + retained_intron 9425520-9425631 asmbl_31793 // Retained and Spliced Intron # retained_intron 9886338-9886445 (orient:+) max_ev_support = 2 # spliced_intron 9886338-9886445 (orient:+) max_ev_support = 2 scaffold_23 + intron 9886338-9886445 asmbl_31804,asmbl_31806 scaffold_23 + retained_intron 9886338-9886445 asmbl_31805 // Retained and Spliced Intron # retained_intron 10020609-10020721 (orient:+) max_ev_support = 1 # spliced_intron 10020609-10020721 (orient:+) max_ev_support = 2 scaffold_23 + intron 10020609-10020721 asmbl_31823,asmbl_31826 scaffold_23 + retained_intron 10020609-10020721 asmbl_31827 // Retained and Spliced Intron # retained_intron 10213636-10214194 (orient:+) max_ev_support = 3 # spliced_intron 10213636-10214194 (orient:+) max_ev_support = 2 scaffold_23 + intron 10213636-10214194 asmbl_31841,asmbl_31842 scaffold_23 + retained_intron 10213636-10214194 asmbl_31839,asmbl_31840 // Retained and Spliced Intron # retained_intron 10230166-10230202 (orient:+) max_ev_support = 1 # spliced_intron 10230166-10230202 (orient:+) max_ev_support = 1 scaffold_23 + intron 10230166-10230202 asmbl_31844 scaffold_23 + retained_intron 10230166-10230202 asmbl_31843 // Exon Skipping and Retention # skipped_exon 10698860-10701583 (orient:+) max_ev_support = 1 # retained_exon 10700992-10701050 (orient:+) max_ev_support = 1 scaffold_23 + retained_exons 10700992-10701050 asmbl_31868 scaffold_23 + intron_skips_exon 10698860-10701583 asmbl_31869 // Exon Skipping and Retention # skipped_exon 10701051-10702423 (orient:+) max_ev_support = 1 # retained_exon 10701584-10701642 (orient:+) max_ev_support = 1 scaffold_23 + retained_exons 10701584-10701642 asmbl_31869 scaffold_23 + intron_skips_exon 10701051-10702423 asmbl_31868 // Retained and Spliced Intron # retained_intron 10894395-10894488 (orient:+) max_ev_support = 2 # spliced_intron 10894395-10894488 (orient:+) max_ev_support = 1 scaffold_23 + intron 10894395-10894488 asmbl_31889 scaffold_23 + retained_intron 10894395-10894488 asmbl_31888 // Retained and Spliced Intron # retained_intron 10897406-10897583 (orient:+) max_ev_support = 1 # spliced_intron 10897406-10897583 (orient:+) max_ev_support = 2 scaffold_23 + intron 10897406-10897583 asmbl_31890 scaffold_23 + retained_intron 10897406-10897583 asmbl_31892 // Retained and Spliced Intron # retained_intron 10897406-10897606 (orient:+) max_ev_support = 1 # spliced_intron 10897406-10897606 (orient:+) max_ev_support = 2 scaffold_23 + intron 10897406-10897606 asmbl_31891 scaffold_23 + retained_intron 10897406-10897606 asmbl_31892 // Retained and Spliced Intron # retained_intron 10975035-10975280 (orient:+) max_ev_support = 2 # spliced_intron 10975035-10975280 (orient:+) max_ev_support = 2 scaffold_23 + intron 10975035-10975280 asmbl_31898,asmbl_31900,asmbl_31905,asmbl_31906 scaffold_23 + retained_intron 10975035-10975280 asmbl_31894,asmbl_31904 // Exon Skipping and Retention # skipped_exon 10975457-10977281 (orient:+) max_ev_support = 1 # retained_exon 10976189-10976361 (orient:+) max_ev_support = 2 scaffold_23 + retained_exons 10976189-10976361 asmbl_31898,asmbl_31900,asmbl_31905,asmbl_31906 scaffold_23 + intron_skips_exon 10975457-10977281 asmbl_31904 // Retained and Spliced Intron # retained_intron 10977476-10977635 (orient:+) max_ev_support = 2 # spliced_intron 10977476-10977635 (orient:+) max_ev_support = 2 scaffold_23 + intron 10977476-10977635 asmbl_31898,asmbl_31900,asmbl_31905,asmbl_31906 scaffold_23 + retained_intron 10977476-10977635 asmbl_31899,asmbl_31901,asmbl_31902,asmbl_31903,asmbl_31904 // Retained and Spliced Intron # retained_intron 10977777-10977923 (orient:+) max_ev_support = 2 # spliced_intron 10977777-10977923 (orient:+) max_ev_support = 2 scaffold_23 + intron 10977777-10977923 asmbl_31898,asmbl_31900,asmbl_31901,asmbl_31902,asmbl_31904,asmbl_31905 scaffold_23 + retained_intron 10977777-10977923 asmbl_31899,asmbl_31903,asmbl_31906 // Retained and Spliced Intron # retained_intron 10978092-10978827 (orient:+) max_ev_support = 2 # spliced_intron 10978092-10978827 (orient:+) max_ev_support = 2 scaffold_23 + intron 10978092-10978827 asmbl_31898,asmbl_31903,asmbl_31904,asmbl_31906 scaffold_23 + retained_intron 10978092-10978827 asmbl_31899,asmbl_31900,asmbl_31901,asmbl_31902,asmbl_31905 // Retained and Spliced Intron # retained_intron 10978895-10979242 (orient:+) max_ev_support = 2 # spliced_intron 10978895-10979242 (orient:+) max_ev_support = 2 scaffold_23 + intron 10978895-10979242 asmbl_31898,asmbl_31902,asmbl_31905,asmbl_31906 scaffold_23 + retained_intron 10978895-10979242 asmbl_31899,asmbl_31900,asmbl_31901,asmbl_31903,asmbl_31904 // Retained and Spliced Intron # retained_intron 31492-31533 (orient:+) max_ev_support = 1 # spliced_intron 31492-31533 (orient:+) max_ev_support = 1 scaffold_24 + intron 31492-31533 asmbl_32002 scaffold_24 + retained_intron 31492-31533 asmbl_32001 // Retained and Spliced Intron # retained_intron 30069-30109 (orient:+) max_ev_support = 1 # spliced_intron 30069-30109 (orient:+) max_ev_support = 1 scaffold_24 + intron 30069-30109 asmbl_32001 scaffold_24 + retained_intron 30069-30109 asmbl_32002 // Retained and Spliced Intron # retained_intron 445903-446548 (orient:+) max_ev_support = 1 # spliced_intron 445903-446548 (orient:+) max_ev_support = 2 scaffold_24 + intron 445903-446548 asmbl_32016,asmbl_32017 scaffold_24 + retained_intron 445903-446548 asmbl_32021 // Retained and Spliced Intron # retained_intron 655307-655405 (orient:+) max_ev_support = 2 # spliced_intron 655307-655405 (orient:+) max_ev_support = 2 scaffold_24 + intron 655307-655405 asmbl_32031 scaffold_24 + retained_intron 655307-655405 asmbl_32030 // Retained and Spliced Intron # retained_intron 718962-719078 (orient:+) max_ev_support = 2 # spliced_intron 718962-719078 (orient:+) max_ev_support = 1 scaffold_24 + intron 718962-719078 asmbl_32039,asmbl_32040 scaffold_24 + retained_intron 718962-719078 asmbl_32037,asmbl_32038 // Retained and Spliced Intron # retained_intron 879746-879842 (orient:+) max_ev_support = 2 # spliced_intron 879746-879842 (orient:+) max_ev_support = 1 scaffold_24 + intron 879746-879842 asmbl_32055 scaffold_24 + retained_intron 879746-879842 asmbl_32053 // Retained and Spliced Intron # retained_intron 879811-879831 (orient:+) max_ev_support = 2 # spliced_intron 879811-879831 (orient:+) max_ev_support = 1 scaffold_24 + intron 879811-879831 asmbl_32054 scaffold_24 + retained_intron 879811-879831 asmbl_32053 // Retained and Spliced Intron # retained_intron 1035334-1035594 (orient:+) max_ev_support = 1 # spliced_intron 1035334-1035594 (orient:+) max_ev_support = 2 scaffold_24 + intron 1035334-1035594 asmbl_32060 scaffold_24 + retained_intron 1035334-1035594 asmbl_32062 // Retained and Spliced Intron # retained_intron 1064378-1064849 (orient:+) max_ev_support = 5 # spliced_intron 1064378-1064849 (orient:+) max_ev_support = 3 scaffold_24 + intron 1064378-1064849 asmbl_32064 scaffold_24 + retained_intron 1064378-1064849 asmbl_32063 // Retained and Spliced Intron # retained_intron 1064662-1064849 (orient:+) max_ev_support = 5 # spliced_intron 1064662-1064849 (orient:+) max_ev_support = 1 scaffold_24 + intron 1064662-1064849 asmbl_32065 scaffold_24 + retained_intron 1064662-1064849 asmbl_32063 // Retained and Spliced Intron # retained_intron 1078652-1078823 (orient:+) max_ev_support = 2 # spliced_intron 1078652-1078823 (orient:+) max_ev_support = 2 scaffold_24 + intron 1078652-1078823 asmbl_32067 scaffold_24 + retained_intron 1078652-1078823 asmbl_32068 // Retained and Spliced Intron # retained_intron 1078656-1078823 (orient:+) max_ev_support = 2 # spliced_intron 1078656-1078823 (orient:+) max_ev_support = 2 scaffold_24 + intron 1078656-1078823 asmbl_32066 scaffold_24 + retained_intron 1078656-1078823 asmbl_32068 // Retained and Spliced Intron # retained_intron 1452902-1452990 (orient:+) max_ev_support = 3 # spliced_intron 1452902-1452990 (orient:+) max_ev_support = 1 scaffold_24 + intron 1452902-1452990 asmbl_32079 scaffold_24 + retained_intron 1452902-1452990 asmbl_32078 // Retained and Spliced Intron # retained_intron 1452917-1452990 (orient:+) max_ev_support = 3 # spliced_intron 1452917-1452990 (orient:+) max_ev_support = 3 scaffold_24 + intron 1452917-1452990 asmbl_32077 scaffold_24 + retained_intron 1452917-1452990 asmbl_32078 // Exon Skipping and Retention # skipped_exon 2430315-2431447 (orient:+) max_ev_support = 2 # retained_exon 2430533-2430685 (orient:+) max_ev_support = 2 scaffold_24 + retained_exons 2430533-2430685 asmbl_32096 scaffold_24 + intron_skips_exon 2430315-2431447 asmbl_32097 // Retained and Spliced Intron # retained_intron 2514768-2515025 (orient:+) max_ev_support = 2 # spliced_intron 2514768-2515025 (orient:+) max_ev_support = 2 scaffold_24 + intron 2514768-2515025 asmbl_32101 scaffold_24 + retained_intron 2514768-2515025 asmbl_32102 // Retained and Spliced Intron # retained_intron 2514768-2515066 (orient:+) max_ev_support = 2 # spliced_intron 2514768-2515066 (orient:+) max_ev_support = 2 scaffold_24 + intron 2514768-2515066 asmbl_32103,asmbl_32104 scaffold_24 + retained_intron 2514768-2515066 asmbl_32102 // Retained and Spliced Intron # retained_intron 3026292-3026335 (orient:+) max_ev_support = 1 # spliced_intron 3026292-3026335 (orient:+) max_ev_support = 1 scaffold_24 + intron 3026292-3026335 asmbl_32132 scaffold_24 + retained_intron 3026292-3026335 asmbl_32131 // Retained and Spliced Intron # retained_intron 3335564-3335692 (orient:+) max_ev_support = 1 # spliced_intron 3335564-3335692 (orient:+) max_ev_support = 2 scaffold_24 + intron 3335564-3335692 asmbl_32139 scaffold_24 + retained_intron 3335564-3335692 asmbl_32141 // Retained and Spliced Intron # retained_intron 3655845-3656072 (orient:+) max_ev_support = 3 # spliced_intron 3655845-3656072 (orient:+) max_ev_support = 3 scaffold_24 + intron 3655845-3656072 asmbl_32148,asmbl_32153 scaffold_24 + retained_intron 3655845-3656072 asmbl_32147 // Retained and Spliced Intron # retained_intron 3655845-3656569 (orient:+) max_ev_support = 3 # spliced_intron 3655845-3656569 (orient:+) max_ev_support = 3 scaffold_24 + intron 3655845-3656569 asmbl_32150 scaffold_24 + retained_intron 3655845-3656569 asmbl_32147 // Retained and Spliced Intron # retained_intron 3655857-3656074 (orient:+) max_ev_support = 3 # spliced_intron 3655857-3656074 (orient:+) max_ev_support = 1 scaffold_24 + intron 3655857-3656074 asmbl_32154 scaffold_24 + retained_intron 3655857-3656074 asmbl_32147 // Retained and Spliced Intron # retained_intron 3655857-3656169 (orient:+) max_ev_support = 3 # spliced_intron 3655857-3656169 (orient:+) max_ev_support = 3 scaffold_24 + intron 3655857-3656169 asmbl_32149 scaffold_24 + retained_intron 3655857-3656169 asmbl_32147 // Retained and Spliced Intron # retained_intron 3655919-3656169 (orient:+) max_ev_support = 3 # spliced_intron 3655919-3656169 (orient:+) max_ev_support = 2 scaffold_24 + intron 3655919-3656169 asmbl_32151,asmbl_32152 scaffold_24 + retained_intron 3655919-3656169 asmbl_32147 // Retained and Spliced Intron # retained_intron 3655652-3655776 (orient:+) max_ev_support = 1 # spliced_intron 3655652-3655776 (orient:+) max_ev_support = 3 scaffold_24 + intron 3655652-3655776 asmbl_32147,asmbl_32148,asmbl_32149,asmbl_32150,asmbl_32151,asmbl_32154 scaffold_24 + retained_intron 3655652-3655776 asmbl_32152,asmbl_32153 // Retained and Spliced Intron # retained_intron 3700697-3701118 (orient:+) max_ev_support = 2 # spliced_intron 3700697-3701118 (orient:+) max_ev_support = 3 scaffold_24 + intron 3700697-3701118 asmbl_32157 scaffold_24 + retained_intron 3700697-3701118 asmbl_32158 // Retained and Spliced Intron # retained_intron 3701651-3701884 (orient:+) max_ev_support = 2 # spliced_intron 3701651-3701884 (orient:+) max_ev_support = 3 scaffold_24 + intron 3701651-3701884 asmbl_32157,asmbl_32158 scaffold_24 + retained_intron 3701651-3701884 asmbl_32159 // Exon Skipping and Retention # skipped_exon 3791108-3792178 (orient:+) max_ev_support = 1 # retained_exon 3791306-3791410 (orient:+) max_ev_support = 2 scaffold_24 + retained_exons 3791306-3791410 asmbl_32162 scaffold_24 + intron_skips_exon 3791108-3792178 asmbl_32163 // Exon Skipping and Retention # skipped_exon 4280160-4280658 (orient:+) max_ev_support = 2 # retained_exon 4280562-4280609 (orient:+) max_ev_support = 2 scaffold_24 + retained_exons 4280562-4280609 asmbl_32177 scaffold_24 + intron_skips_exon 4280160-4280658 asmbl_32178 // Exon Skipping and Retention # skipped_exon 4280160-4281253 (orient:+) max_ev_support = 1 # retained_exon 4280562-4281195 (orient:+) max_ev_support = 2 scaffold_24 + retained_exons 4280562-4280609,4281153-4281195 asmbl_32177 scaffold_24 + intron_skips_exon 4280160-4280658 asmbl_32179 scaffold_24 + intron_skips_exon 4280796-4281253 asmbl_32179 // Exon Skipping and Retention # skipped_exon 4280610-4281152 (orient:+) max_ev_support = 2 # retained_exon 4280659-4280795 (orient:+) max_ev_support = 2 scaffold_24 + retained_exons 4280659-4280795 asmbl_32178,asmbl_32179 scaffold_24 + intron_skips_exon 4280610-4281152 asmbl_32177 // Exon Skipping and Retention # skipped_exon 4280796-4281253 (orient:+) max_ev_support = 1 # retained_exon 4281153-4281195 (orient:+) max_ev_support = 2 scaffold_24 + retained_exons 4281153-4281195 asmbl_32178 scaffold_24 + intron_skips_exon 4280796-4281253 asmbl_32179 // Retained and Spliced Intron # retained_intron 4294010-4294192 (orient:+) max_ev_support = 1 # spliced_intron 4294010-4294192 (orient:+) max_ev_support = 2 scaffold_24 + intron 4294010-4294192 asmbl_32180 scaffold_24 + retained_intron 4294010-4294192 asmbl_32182 // Exon Skipping and Retention # skipped_exon 4318761-4319489 (orient:+) max_ev_support = 1 # retained_exon 4318839-4318880 (orient:+) max_ev_support = 1 scaffold_24 + retained_exons 4318839-4318880 asmbl_32187 scaffold_24 + intron_skips_exon 4318761-4319489 asmbl_32188 // Exon Skipping and Retention # skipped_exon 4319025-4319782 (orient:+) max_ev_support = 1 # retained_exon 4319607-4319675 (orient:+) max_ev_support = 1 scaffold_24 + retained_exons 4319607-4319675 asmbl_32187 scaffold_24 + intron_skips_exon 4319025-4319782 asmbl_32189 // Exon Skipping and Retention # skipped_exon 4318881-4319606 (orient:+) max_ev_support = 1 # retained_exon 4319490-4319531 (orient:+) max_ev_support = 1 scaffold_24 + retained_exons 4319490-4319531 asmbl_32188 scaffold_24 + intron_skips_exon 4318881-4319606 asmbl_32187 // Retained and Spliced Intron # retained_intron 4328698-4328844 (orient:+) max_ev_support = 1 # spliced_intron 4328698-4328844 (orient:+) max_ev_support = 1 scaffold_24 + intron 4328698-4328844 asmbl_32192,asmbl_32193 scaffold_24 + retained_intron 4328698-4328844 asmbl_32194 // Exon Skipping and Retention # skipped_exon 4375751-4376931 (orient:+) max_ev_support = 1 # retained_exon 4375882-4376765 (orient:+) max_ev_support = 3 scaffold_24 + retained_exons 4375882-4375969,4376626-4376765 asmbl_32197 scaffold_24 + intron_skips_exon 4375751-4376931 asmbl_32199 // Exon Skipping and Retention # skipped_exon 5383776-5385309 (orient:+) max_ev_support = 2 # retained_exon 5384277-5384350 (orient:+) max_ev_support = 2 scaffold_24 + retained_exons 5384277-5384350 asmbl_32213 scaffold_24 + intron_skips_exon 5383776-5385309 asmbl_32212 // Retained and Spliced Intron # retained_intron 5948199-5949651 (orient:+) max_ev_support = 2 # spliced_intron 5948199-5949651 (orient:+) max_ev_support = 2 scaffold_24 + intron 5948199-5949651 asmbl_32251,asmbl_32260,asmbl_32261,asmbl_32262,asmbl_32264,asmbl_32268,asmbl_32269,asmbl_32273,asmbl_32274,asmbl_32276 scaffold_24 + retained_intron 5948199-5949651 asmbl_32253 // Retained and Spliced Intron # retained_intron 5949822-5950116 (orient:+) max_ev_support = 2 # spliced_intron 5949822-5950116 (orient:+) max_ev_support = 1 scaffold_24 + intron 5949822-5950116 asmbl_32276 scaffold_24 + retained_intron 5949822-5950116 asmbl_32253,asmbl_32260,asmbl_32264,asmbl_32273 // Retained and Spliced Intron # retained_intron 5940367-5940483 (orient:+) max_ev_support = 2 # spliced_intron 5940367-5940483 (orient:+) max_ev_support = 1 scaffold_24 + intron 5940367-5940483 asmbl_32265 scaffold_24 + retained_intron 5940367-5940483 asmbl_32255,asmbl_32262,asmbl_32264,asmbl_32266,asmbl_32269 // Retained and Spliced Intron # retained_intron 5939387-5939564 (orient:+) max_ev_support = 2 # spliced_intron 5939387-5939564 (orient:+) max_ev_support = 2 scaffold_24 + intron 5939387-5939564 asmbl_32251,asmbl_32260,asmbl_32261,asmbl_32267,asmbl_32268,asmbl_32271,asmbl_32272,asmbl_32273,asmbl_32274,asmbl_32275,asmbl_32276 scaffold_24 + retained_intron 5939387-5939564 asmbl_32256,asmbl_32263,asmbl_32265 // Retained and Spliced Intron # retained_intron 5951108-5951617 (orient:+) max_ev_support = 1 # spliced_intron 5951108-5951617 (orient:+) max_ev_support = 2 scaffold_24 + intron 5951108-5951617 asmbl_32251,asmbl_32262,asmbl_32268,asmbl_32269,asmbl_32274 scaffold_24 + retained_intron 5951108-5951617 asmbl_32261 // Exon Skipping and Retention # skipped_exon 5939637-5940483 (orient:+) max_ev_support = 2 # retained_exon 5940322-5940366 (orient:+) max_ev_support = 1 scaffold_24 + retained_exons 5940322-5940366 asmbl_32265 scaffold_24 + intron_skips_exon 5939637-5940483 asmbl_32251,asmbl_32260,asmbl_32261,asmbl_32263,asmbl_32267,asmbl_32268,asmbl_32271,asmbl_32272,asmbl_32273,asmbl_32274,asmbl_32275,asmbl_32276 // Retained and Spliced Intron # retained_intron 5945203-5947592 (orient:+) max_ev_support = 1 # spliced_intron 5945203-5947592 (orient:+) max_ev_support = 2 scaffold_24 + intron 5945203-5947592 asmbl_32251,asmbl_32260,asmbl_32261,asmbl_32262,asmbl_32264,asmbl_32268,asmbl_32269,asmbl_32273,asmbl_32274,asmbl_32275,asmbl_32276 scaffold_24 + retained_intron 5945203-5947592 asmbl_32266,asmbl_32271,asmbl_32272 // Exon Skipping and Retention # skipped_exon 6290670-6292064 (orient:+) max_ev_support = 2 # retained_exon 6291224-6291262 (orient:+) max_ev_support = 1 scaffold_24 + retained_exons 6291224-6291262 asmbl_32298 scaffold_24 + intron_skips_exon 6290670-6292064 asmbl_32297 // Retained and Spliced Intron # retained_intron 6297525-6297691 (orient:+) max_ev_support = 3 # spliced_intron 6297525-6297691 (orient:+) max_ev_support = 3 scaffold_24 + intron 6297525-6297691 asmbl_32299 scaffold_24 + retained_intron 6297525-6297691 asmbl_32301 // Retained and Spliced Intron # retained_intron 6297543-6297691 (orient:+) max_ev_support = 3 # spliced_intron 6297543-6297691 (orient:+) max_ev_support = 3 scaffold_24 + intron 6297543-6297691 asmbl_32300 scaffold_24 + retained_intron 6297543-6297691 asmbl_32301 // Retained and Spliced Intron # retained_intron 6307469-6307627 (orient:+) max_ev_support = 2 # spliced_intron 6307469-6307627 (orient:+) max_ev_support = 1 scaffold_24 + intron 6307469-6307627 asmbl_32305 scaffold_24 + retained_intron 6307469-6307627 asmbl_32302,asmbl_32303,asmbl_32304 // Retained and Spliced Intron # retained_intron 6310450-6310978 (orient:+) max_ev_support = 1 # spliced_intron 6310450-6310978 (orient:+) max_ev_support = 2 scaffold_24 + intron 6310450-6310978 asmbl_32302,asmbl_32304,asmbl_32305 scaffold_24 + retained_intron 6310450-6310978 asmbl_32303 // Retained and Spliced Intron # retained_intron 6311156-6311448 (orient:+) max_ev_support = 1 # spliced_intron 6311156-6311448 (orient:+) max_ev_support = 2 scaffold_24 + intron 6311156-6311448 asmbl_32302,asmbl_32303,asmbl_32305 scaffold_24 + retained_intron 6311156-6311448 asmbl_32304 // Retained and Spliced Intron # retained_intron 6445291-6445510 (orient:+) max_ev_support = 3 # spliced_intron 6445291-6445510 (orient:+) max_ev_support = 1 scaffold_24 + intron 6445291-6445510 asmbl_32315 scaffold_24 + retained_intron 6445291-6445510 asmbl_32309 // Exon Skipping and Retention # skipped_exon 6831669-6833623 (orient:+) max_ev_support = 1 # retained_exon 6832782-6832859 (orient:+) max_ev_support = 2 scaffold_24 + retained_exons 6832782-6832859 asmbl_32346,asmbl_32347,asmbl_32349,asmbl_32353 scaffold_24 + intron_skips_exon 6831669-6833623 asmbl_32348 // Exon Skipping and Retention # skipped_exon 6832860-6834175 (orient:+) max_ev_support = 2 # retained_exon 6833624-6833656 (orient:+) max_ev_support = 2 scaffold_24 + retained_exons 6833624-6833656 asmbl_32347,asmbl_32348 scaffold_24 + intron_skips_exon 6832860-6834175 asmbl_32346,asmbl_32353 // Retained and Spliced Intron # retained_intron 6833657-6834175 (orient:+) max_ev_support = 3 # spliced_intron 6833657-6834175 (orient:+) max_ev_support = 2 scaffold_24 + intron 6833657-6834175 asmbl_32347,asmbl_32348 scaffold_24 + retained_intron 6833657-6834175 asmbl_32349 // Retained and Spliced Intron # retained_intron 6834417-6834757 (orient:+) max_ev_support = 1 # spliced_intron 6834417-6834757 (orient:+) max_ev_support = 2 scaffold_24 + intron 6834417-6834757 asmbl_32346,asmbl_32347,asmbl_32348 scaffold_24 + retained_intron 6834417-6834757 asmbl_32353 // Exon Skipping and Retention # skipped_exon 7099268-7100129 (orient:+) max_ev_support = 1 # retained_exon 7099438-7099912 (orient:+) max_ev_support = 1 scaffold_24 + retained_exons 7099438-7099549,7099813-7099912 asmbl_32368 scaffold_24 + intron_skips_exon 7099268-7100129 asmbl_32367 // Retained and Spliced Intron # retained_intron 7167433-7167861 (orient:+) max_ev_support = 6 # spliced_intron 7167433-7167861 (orient:+) max_ev_support = 1 scaffold_24 + intron 7167433-7167861 asmbl_32375 scaffold_24 + retained_intron 7167433-7167861 asmbl_32373,asmbl_32374 // Exon Skipping and Retention # skipped_exon 7201058-7202218 (orient:+) max_ev_support = 1 # retained_exon 7201371-7201439 (orient:+) max_ev_support = 1 scaffold_24 + retained_exons 7201371-7201439 asmbl_32378 scaffold_24 + intron_skips_exon 7201058-7202218 asmbl_32377,asmbl_32379 // Retained and Spliced Intron # retained_intron 8121621-8121799 (orient:+) max_ev_support = 1 # spliced_intron 8121621-8121799 (orient:+) max_ev_support = 4 scaffold_24 + intron 8121621-8121799 asmbl_32410,asmbl_32411,asmbl_32412 scaffold_24 + retained_intron 8121621-8121799 asmbl_32413 // Retained and Spliced Intron # retained_intron 8747030-8747465 (orient:+) max_ev_support = 3 # spliced_intron 8747030-8747465 (orient:+) max_ev_support = 3 scaffold_24 + intron 8747030-8747465 asmbl_32441 scaffold_24 + retained_intron 8747030-8747465 asmbl_32440 // Retained and Spliced Intron # retained_intron 8747124-8747465 (orient:+) max_ev_support = 3 # spliced_intron 8747124-8747465 (orient:+) max_ev_support = 1 scaffold_24 + intron 8747124-8747465 asmbl_32443 scaffold_24 + retained_intron 8747124-8747465 asmbl_32440 // Exon Skipping and Retention # skipped_exon 8954743-8955084 (orient:+) max_ev_support = 1 # retained_exon 8954816-8954906 (orient:+) max_ev_support = 3 scaffold_24 + retained_exons 8954816-8954906 asmbl_32460 scaffold_24 + intron_skips_exon 8954743-8955084 asmbl_32462 // Retained and Spliced Intron # retained_intron 8954743-8954815 (orient:+) max_ev_support = 2 # spliced_intron 8954743-8954815 (orient:+) max_ev_support = 3 scaffold_24 + intron 8954743-8954815 asmbl_32460 scaffold_24 + retained_intron 8954743-8954815 asmbl_32461,asmbl_32463 // Retained and Spliced Intron # retained_intron 8992308-8992351 (orient:+) max_ev_support = 3 # spliced_intron 8992308-8992351 (orient:+) max_ev_support = 1 scaffold_24 + intron 8992308-8992351 asmbl_32476 scaffold_24 + retained_intron 8992308-8992351 asmbl_32475 // Retained and Spliced Intron # retained_intron 9064471-9064576 (orient:+) max_ev_support = 2 # spliced_intron 9064471-9064576 (orient:+) max_ev_support = 3 scaffold_24 + intron 9064471-9064576 asmbl_32485,asmbl_32487 scaffold_24 + retained_intron 9064471-9064576 asmbl_32486 // Exon Skipping and Retention # skipped_exon 9080067-9082772 (orient:+) max_ev_support = 3 # retained_exon 9082287-9082385 (orient:+) max_ev_support = 2 scaffold_24 + retained_exons 9082287-9082385 asmbl_32491,asmbl_32497,asmbl_32498 scaffold_24 + intron_skips_exon 9080067-9082772 asmbl_32489,asmbl_32490,asmbl_32494 // Exon Skipping and Retention # skipped_exon 9073530-9076142 (orient:+) max_ev_support = 3 # retained_exon 9074801-9074842 (orient:+) max_ev_support = 1 scaffold_24 + retained_exons 9074801-9074842 asmbl_32497 scaffold_24 + intron_skips_exon 9073530-9076142 asmbl_32489,asmbl_32490,asmbl_32491,asmbl_32496 // Exon Skipping and Retention # skipped_exon 9119018-9119908 (orient:+) max_ev_support = 2 # retained_exon 9119237-9119809 (orient:+) max_ev_support = 3 scaffold_24 + retained_exons 9119237-9119809 asmbl_32506 scaffold_24 + intron_skips_exon 9119018-9119908 asmbl_32509,asmbl_32510,asmbl_32511,asmbl_32512,asmbl_32513,asmbl_32514,asmbl_32515 // Retained and Spliced Intron # retained_intron 9119810-9119908 (orient:+) max_ev_support = 2 # spliced_intron 9119810-9119908 (orient:+) max_ev_support = 2 scaffold_24 + intron 9119810-9119908 asmbl_32506 scaffold_24 + retained_intron 9119810-9119908 asmbl_32507,asmbl_32508 // Retained and Spliced Intron # retained_intron 9120008-9120346 (orient:+) max_ev_support = 2 # spliced_intron 9120008-9120346 (orient:+) max_ev_support = 2 scaffold_24 + intron 9120008-9120346 asmbl_32506,asmbl_32508,asmbl_32509,asmbl_32510,asmbl_32512,asmbl_32513,asmbl_32515 scaffold_24 + retained_intron 9120008-9120346 asmbl_32507,asmbl_32511,asmbl_32514 // Retained and Spliced Intron # retained_intron 9117195-9117393 (orient:+) max_ev_support = 1 # spliced_intron 9117195-9117393 (orient:+) max_ev_support = 2 scaffold_24 + intron 9117195-9117393 asmbl_32506,asmbl_32507,asmbl_32508,asmbl_32509,asmbl_32510,asmbl_32511,asmbl_32513,asmbl_32514 scaffold_24 + retained_intron 9117195-9117393 asmbl_32512 // Retained and Spliced Intron # retained_intron 9116511-9116746 (orient:+) max_ev_support = 1 # spliced_intron 9116511-9116746 (orient:+) max_ev_support = 1 scaffold_24 + intron 9116511-9116746 asmbl_32510 scaffold_24 + retained_intron 9116511-9116746 asmbl_32513,asmbl_32514 // Retained and Spliced Intron # retained_intron 9116511-9116764 (orient:+) max_ev_support = 1 # spliced_intron 9116511-9116764 (orient:+) max_ev_support = 2 scaffold_24 + intron 9116511-9116764 asmbl_32506,asmbl_32507,asmbl_32508,asmbl_32509,asmbl_32511,asmbl_32512 scaffold_24 + retained_intron 9116511-9116764 asmbl_32513,asmbl_32514 // Retained and Spliced Intron # retained_intron 9121693-9121853 (orient:+) max_ev_support = 2 # spliced_intron 9121693-9121853 (orient:+) max_ev_support = 1 scaffold_24 + intron 9121693-9121853 asmbl_32519 scaffold_24 + retained_intron 9121693-9121853 asmbl_32517,asmbl_32518 // Retained and Spliced Intron # retained_intron 9121547-9121613 (orient:+) max_ev_support = 1 # spliced_intron 9121547-9121613 (orient:+) max_ev_support = 2 scaffold_24 + intron 9121547-9121613 asmbl_32517 scaffold_24 + retained_intron 9121547-9121613 asmbl_32518 // Retained and Spliced Intron # retained_intron 9121547-9121853 (orient:+) max_ev_support = 1 # spliced_intron 9121547-9121853 (orient:+) max_ev_support = 3 scaffold_24 + intron 9121547-9121853 asmbl_32516 scaffold_24 + retained_intron 9121547-9121853 asmbl_32518 // Retained and Spliced Intron # retained_intron 9128917-9129415 (orient:+) max_ev_support = 2 # spliced_intron 9128917-9129415 (orient:+) max_ev_support = 2 scaffold_24 + intron 9128917-9129415 asmbl_32520 scaffold_24 + retained_intron 9128917-9129415 asmbl_32521 // Retained and Spliced Intron # retained_intron 9934311-9934385 (orient:+) max_ev_support = 1 # spliced_intron 9934311-9934385 (orient:+) max_ev_support = 2 scaffold_24 + intron 9934311-9934385 asmbl_32537 scaffold_24 + retained_intron 9934311-9934385 asmbl_32538 // Exon Skipping and Retention # skipped_exon 10132037-10134152 (orient:+) max_ev_support = 1 # retained_exon 10133801-10133933 (orient:+) max_ev_support = 3 scaffold_24 + retained_exons 10133801-10133933 asmbl_32543 scaffold_24 + intron_skips_exon 10132037-10134152 asmbl_32544 // Exon Skipping and Retention # skipped_exon 10130846-10133800 (orient:+) max_ev_support = 3 # retained_exon 10131904-10132036 (orient:+) max_ev_support = 1 scaffold_24 + retained_exons 10131904-10132036 asmbl_32544 scaffold_24 + intron_skips_exon 10130846-10133800 asmbl_32543 // Retained and Spliced Intron # retained_intron 10422912-10423124 (orient:+) max_ev_support = 2 # spliced_intron 10422912-10423124 (orient:+) max_ev_support = 2 scaffold_24 + intron 10422912-10423124 asmbl_32558 scaffold_24 + retained_intron 10422912-10423124 asmbl_32559,asmbl_32560 // Retained and Spliced Intron # retained_intron 10423260-10423576 (orient:+) max_ev_support = 2 # spliced_intron 10423260-10423576 (orient:+) max_ev_support = 2 scaffold_24 + intron 10423260-10423576 asmbl_32558,asmbl_32560 scaffold_24 + retained_intron 10423260-10423576 asmbl_32559 // Retained and Spliced Intron # retained_intron 10480275-10480378 (orient:+) max_ev_support = 1 # spliced_intron 10480275-10480378 (orient:+) max_ev_support = 1 scaffold_24 + intron 10480275-10480378 asmbl_32565 scaffold_24 + retained_intron 10480275-10480378 asmbl_32568 // Retained and Spliced Intron # retained_intron 10480275-10480714 (orient:+) max_ev_support = 1 # spliced_intron 10480275-10480714 (orient:+) max_ev_support = 2 scaffold_24 + intron 10480275-10480714 asmbl_32563,asmbl_32564 scaffold_24 + retained_intron 10480275-10480714 asmbl_32568 // Retained and Spliced Intron # retained_intron 10604358-10604689 (orient:+) max_ev_support = 2 # spliced_intron 10604358-10604689 (orient:+) max_ev_support = 2 scaffold_24 + intron 10604358-10604689 asmbl_32578,asmbl_32579,asmbl_32581,asmbl_32582,asmbl_32583 scaffold_24 + retained_intron 10604358-10604689 asmbl_32580 // Retained and Spliced Intron # retained_intron 10605221-10605501 (orient:+) max_ev_support = 1 # spliced_intron 10605221-10605501 (orient:+) max_ev_support = 2 scaffold_24 + intron 10605221-10605501 asmbl_32578,asmbl_32579,asmbl_32580,asmbl_32583 scaffold_24 + retained_intron 10605221-10605501 asmbl_32582 // Retained and Spliced Intron # retained_intron 10605221-10605541 (orient:+) max_ev_support = 1 # spliced_intron 10605221-10605541 (orient:+) max_ev_support = 2 scaffold_24 + intron 10605221-10605541 asmbl_32581 scaffold_24 + retained_intron 10605221-10605541 asmbl_32582 // Exon Skipping and Retention # skipped_exon 33655-34681 (orient:-) max_ev_support = 1 # retained_exon 33735-33864 (orient:-) max_ev_support = 2 scaffold_24 - retained_exons 33735-33864 asmbl_32686 scaffold_24 - intron_skips_exon 33655-34681 asmbl_32687 // Retained and Spliced Intron # retained_intron 162380-162721 (orient:-) max_ev_support = 3 # spliced_intron 162380-162721 (orient:-) max_ev_support = 2 scaffold_24 - intron 162380-162721 asmbl_32698 scaffold_24 - retained_intron 162380-162721 asmbl_32699 // Retained and Spliced Intron # retained_intron 727022-727258 (orient:-) max_ev_support = 2 # spliced_intron 727022-727258 (orient:-) max_ev_support = 3 scaffold_24 - intron 727022-727258 asmbl_32705,asmbl_32706 scaffold_24 - retained_intron 727022-727258 asmbl_32707 // Retained and Spliced Intron # retained_intron 1939606-1939723 (orient:-) max_ev_support = 2 # spliced_intron 1939606-1939723 (orient:-) max_ev_support = 2 scaffold_24 - intron 1939606-1939723 asmbl_32751 scaffold_24 - retained_intron 1939606-1939723 asmbl_32752 // Retained and Spliced Intron # retained_intron 1945924-1946132 (orient:-) max_ev_support = 1 # spliced_intron 1945924-1946132 (orient:-) max_ev_support = 1 scaffold_24 - intron 1945924-1946132 asmbl_32755,asmbl_32757 scaffold_24 - retained_intron 1945924-1946132 asmbl_32754 // Retained and Spliced Intron # retained_intron 1945924-1946155 (orient:-) max_ev_support = 1 # spliced_intron 1945924-1946155 (orient:-) max_ev_support = 1 scaffold_24 - intron 1945924-1946155 asmbl_32756 scaffold_24 - retained_intron 1945924-1946155 asmbl_32754 // Retained and Spliced Intron # retained_intron 2065131-2065376 (orient:-) max_ev_support = 3 # spliced_intron 2065131-2065376 (orient:-) max_ev_support = 1 scaffold_24 - intron 2065131-2065376 asmbl_32772 scaffold_24 - retained_intron 2065131-2065376 asmbl_32771 // Retained and Spliced Intron # retained_intron 2462777-2462837 (orient:-) max_ev_support = 2 # spliced_intron 2462777-2462837 (orient:-) max_ev_support = 2 scaffold_24 - intron 2462777-2462837 asmbl_32787 scaffold_24 - retained_intron 2462777-2462837 asmbl_32786 // Exon Skipping and Retention # skipped_exon 2519404-2521130 (orient:-) max_ev_support = 1 # retained_exon 2520807-2520854 (orient:-) max_ev_support = 2 scaffold_24 - retained_exons 2520807-2520854 asmbl_32792 scaffold_24 - intron_skips_exon 2519404-2521130 asmbl_32793 // Retained and Spliced Intron # retained_intron 2787231-2787394 (orient:-) max_ev_support = 3 # spliced_intron 2787231-2787394 (orient:-) max_ev_support = 2 scaffold_24 - intron 2787231-2787394 asmbl_32802 scaffold_24 - retained_intron 2787231-2787394 asmbl_32801 // Exon Skipping and Retention # skipped_exon 2979214-2981583 (orient:-) max_ev_support = 2 # retained_exon 2980353-2980510 (orient:-) max_ev_support = 2 scaffold_24 - retained_exons 2980353-2980510 asmbl_32811 scaffold_24 - intron_skips_exon 2979214-2981583 asmbl_32812 // Retained and Spliced Intron # retained_intron 3328681-3328826 (orient:-) max_ev_support = 1 # spliced_intron 3328681-3328826 (orient:-) max_ev_support = 2 scaffold_24 - intron 3328681-3328826 asmbl_32815 scaffold_24 - retained_intron 3328681-3328826 asmbl_32816 // Retained and Spliced Intron # retained_intron 3763914-3764002 (orient:-) max_ev_support = 2 # spliced_intron 3763914-3764002 (orient:-) max_ev_support = 3 scaffold_24 - intron 3763914-3764002 asmbl_32849 scaffold_24 - retained_intron 3763914-3764002 asmbl_32850 // Exon Skipping and Retention # skipped_exon 4284868-4285198 (orient:-) max_ev_support = 2 # retained_exon 4284977-4285033 (orient:-) max_ev_support = 1 scaffold_24 - retained_exons 4284977-4285033 asmbl_32867 scaffold_24 - intron_skips_exon 4284868-4285198 asmbl_32866 // Retained and Spliced Intron # retained_intron 5244901-5245095 (orient:-) max_ev_support = 1 # spliced_intron 5244901-5245095 (orient:-) max_ev_support = 2 scaffold_24 - intron 5244901-5245095 asmbl_32883 scaffold_24 - retained_intron 5244901-5245095 asmbl_32884 // Exon Skipping and Retention # skipped_exon 5290101-5290660 (orient:-) max_ev_support = 1 # retained_exon 5290242-5290375 (orient:-) max_ev_support = 2 scaffold_24 - retained_exons 5290242-5290375 asmbl_32885 scaffold_24 - intron_skips_exon 5290101-5290660 asmbl_32886 // Retained and Spliced Intron # retained_intron 5881520-5881765 (orient:-) max_ev_support = 2 # spliced_intron 5881520-5881765 (orient:-) max_ev_support = 2 scaffold_24 - intron 5881520-5881765 asmbl_32909,asmbl_32911 scaffold_24 - retained_intron 5881520-5881765 asmbl_32908,asmbl_32910,asmbl_32912 // Retained and Spliced Intron # retained_intron 5882035-5882303 (orient:-) max_ev_support = 2 # spliced_intron 5882035-5882303 (orient:-) max_ev_support = 2 scaffold_24 - intron 5882035-5882303 asmbl_32909,asmbl_32910,asmbl_32911,asmbl_32912 scaffold_24 - retained_intron 5882035-5882303 asmbl_32908 // Retained and Spliced Intron # retained_intron 6225543-6225855 (orient:-) max_ev_support = 2 # spliced_intron 6225543-6225855 (orient:-) max_ev_support = 2 scaffold_24 - intron 6225543-6225855 asmbl_32940,asmbl_32942,asmbl_32945,asmbl_32946,asmbl_32949 scaffold_24 - retained_intron 6225543-6225855 asmbl_32939,asmbl_32941,asmbl_32944,asmbl_32947,asmbl_32948,asmbl_32950 // Retained and Spliced Intron # retained_intron 6225905-6226490 (orient:-) max_ev_support = 2 # spliced_intron 6225905-6226490 (orient:-) max_ev_support = 2 scaffold_24 - intron 6225905-6226490 asmbl_32940,asmbl_32941,asmbl_32945,asmbl_32946,asmbl_32948,asmbl_32949 scaffold_24 - retained_intron 6225905-6226490 asmbl_32939,asmbl_32942,asmbl_32944,asmbl_32947,asmbl_32950 // Retained and Spliced Intron # retained_intron 6223797-6223880 (orient:-) max_ev_support = 3 # spliced_intron 6223797-6223880 (orient:-) max_ev_support = 2 scaffold_24 - intron 6223797-6223880 asmbl_32946,asmbl_32947,asmbl_32948 scaffold_24 - retained_intron 6223797-6223880 asmbl_32940,asmbl_32942,asmbl_32949,asmbl_32950 // Retained and Spliced Intron # retained_intron 6223967-6224182 (orient:-) max_ev_support = 4 # spliced_intron 6223967-6224182 (orient:-) max_ev_support = 2 scaffold_24 - intron 6223967-6224182 asmbl_32946,asmbl_32947,asmbl_32948,asmbl_32949,asmbl_32950 scaffold_24 - retained_intron 6223967-6224182 asmbl_32940,asmbl_32942 // Retained and Spliced Intron # retained_intron 6432023-6432210 (orient:-) max_ev_support = 2 # spliced_intron 6432023-6432210 (orient:-) max_ev_support = 2 scaffold_24 - intron 6432023-6432210 asmbl_32958,asmbl_32959 scaffold_24 - retained_intron 6432023-6432210 asmbl_32957 // Retained and Spliced Intron # retained_intron 6432265-6432478 (orient:-) max_ev_support = 2 # spliced_intron 6432265-6432478 (orient:-) max_ev_support = 2 scaffold_24 - intron 6432265-6432478 asmbl_32958 scaffold_24 - retained_intron 6432265-6432478 asmbl_32957,asmbl_32959 // Exon Skipping and Retention # skipped_exon 6726453-6728217 (orient:-) max_ev_support = 2 # retained_exon 6727435-6727650 (orient:-) max_ev_support = 2 scaffold_24 - retained_exons 6727435-6727650 asmbl_32965,asmbl_32969,asmbl_32970 scaffold_24 - intron_skips_exon 6726453-6728217 asmbl_32966 // Exon Skipping and Retention # skipped_exon 6783805-6784704 (orient:-) max_ev_support = 1 # retained_exon 6784292-6784330 (orient:-) max_ev_support = 1 scaffold_24 - retained_exons 6784292-6784330 asmbl_32973,asmbl_32974 scaffold_24 - intron_skips_exon 6783805-6784704 asmbl_32975 // Exon Skipping and Retention # skipped_exon 6784331-6785132 (orient:-) max_ev_support = 1 # retained_exon 6784705-6784803 (orient:-) max_ev_support = 1 scaffold_24 - retained_exons 6784705-6784803 asmbl_32974,asmbl_32975 scaffold_24 - intron_skips_exon 6784331-6785132 asmbl_32973 // Exon Skipping and Retention # skipped_exon 6846851-6848069 (orient:-) max_ev_support = 2 # retained_exon 6847764-6847781 (orient:-) max_ev_support = 2 scaffold_24 - retained_exons 6847764-6847781 asmbl_32990 scaffold_24 - intron_skips_exon 6846851-6848069 asmbl_32989 // Retained and Spliced Intron # retained_intron 7175760-7176154 (orient:-) max_ev_support = 1 # spliced_intron 7175760-7176154 (orient:-) max_ev_support = 1 scaffold_24 - intron 7175760-7176154 asmbl_33016 scaffold_24 - retained_intron 7175760-7176154 asmbl_33015 // Retained and Spliced Intron # retained_intron 7173191-7173356 (orient:-) max_ev_support = 1 # spliced_intron 7173191-7173356 (orient:-) max_ev_support = 1 scaffold_24 - intron 7173191-7173356 asmbl_33015,asmbl_33016,asmbl_33017 scaffold_24 - retained_intron 7173191-7173356 asmbl_33018 // Exon Skipping and Retention # skipped_exon 7594201-7595281 (orient:-) max_ev_support = 1 # retained_exon 7594330-7594888 (orient:-) max_ev_support = 1 scaffold_24 - retained_exons 7594330-7594483,7594697-7594888 asmbl_33034 scaffold_24 - intron_skips_exon 7594201-7595281 asmbl_33035 // Exon Skipping and Retention # skipped_exon 7594889-7596265 (orient:-) max_ev_support = 1 # retained_exon 7595282-7595839 (orient:-) max_ev_support = 1 scaffold_24 - retained_exons 7595282-7595435,7595648-7595839 asmbl_33035 scaffold_24 - intron_skips_exon 7594889-7596265 asmbl_33034 // Retained and Spliced Intron # retained_intron 7721535-7721612 (orient:-) max_ev_support = 1 # spliced_intron 7721535-7721612 (orient:-) max_ev_support = 2 scaffold_24 - intron 7721535-7721612 asmbl_33051 scaffold_24 - retained_intron 7721535-7721612 asmbl_33052 // Exon Skipping and Retention # skipped_exon 7733066-7734328 (orient:-) max_ev_support = 1 # retained_exon 7734049-7734093 (orient:-) max_ev_support = 1 scaffold_24 - retained_exons 7734049-7734093 asmbl_33056 scaffold_24 - intron_skips_exon 7733066-7734328 asmbl_33055 // Retained and Spliced Intron # retained_intron 7784554-7784674 (orient:-) max_ev_support = 1 # spliced_intron 7784554-7784674 (orient:-) max_ev_support = 1 scaffold_24 - intron 7784554-7784674 asmbl_33062,asmbl_33063 scaffold_24 - retained_intron 7784554-7784674 asmbl_33061 // Retained and Spliced Intron # retained_intron 7786686-7786927 (orient:-) max_ev_support = 1 # spliced_intron 7786686-7786927 (orient:-) max_ev_support = 1 scaffold_24 - intron 7786686-7786927 asmbl_33062 scaffold_24 - retained_intron 7786686-7786927 asmbl_33063 // Retained and Spliced Intron # retained_intron 7864239-7864324 (orient:-) max_ev_support = 2 # spliced_intron 7864239-7864324 (orient:-) max_ev_support = 1 scaffold_24 - intron 7864239-7864324 asmbl_33075 scaffold_24 - retained_intron 7864239-7864324 asmbl_33073 // Retained and Spliced Intron # retained_intron 7864239-7864383 (orient:-) max_ev_support = 2 # spliced_intron 7864239-7864383 (orient:-) max_ev_support = 2 scaffold_24 - intron 7864239-7864383 asmbl_33074 scaffold_24 - retained_intron 7864239-7864383 asmbl_33073 // Retained and Spliced Intron # retained_intron 8711438-8711587 (orient:-) max_ev_support = 1 # spliced_intron 8711438-8711587 (orient:-) max_ev_support = 2 scaffold_24 - intron 8711438-8711587 asmbl_33089 scaffold_24 - retained_intron 8711438-8711587 asmbl_33090 // Retained and Spliced Intron # retained_intron 8736275-8736426 (orient:-) max_ev_support = 2 # spliced_intron 8736275-8736426 (orient:-) max_ev_support = 2 scaffold_24 - intron 8736275-8736426 asmbl_33097,asmbl_33099,asmbl_33100 scaffold_24 - retained_intron 8736275-8736426 asmbl_33096 // Retained and Spliced Intron # retained_intron 8736585-8736696 (orient:-) max_ev_support = 2 # spliced_intron 8736585-8736696 (orient:-) max_ev_support = 2 scaffold_24 - intron 8736585-8736696 asmbl_33097,asmbl_33099,asmbl_33100 scaffold_24 - retained_intron 8736585-8736696 asmbl_33096 // Retained and Spliced Intron # retained_intron 8736860-8737041 (orient:-) max_ev_support = 2 # spliced_intron 8736860-8737041 (orient:-) max_ev_support = 2 scaffold_24 - intron 8736860-8737041 asmbl_33097,asmbl_33099,asmbl_33100 scaffold_24 - retained_intron 8736860-8737041 asmbl_33096 // Retained and Spliced Intron # retained_intron 8737299-8737413 (orient:-) max_ev_support = 2 # spliced_intron 8737299-8737413 (orient:-) max_ev_support = 2 scaffold_24 - intron 8737299-8737413 asmbl_33097,asmbl_33099,asmbl_33100,asmbl_33101 scaffold_24 - retained_intron 8737299-8737413 asmbl_33096 // Retained and Spliced Intron # retained_intron 8737754-8737865 (orient:-) max_ev_support = 1 # spliced_intron 8737754-8737865 (orient:-) max_ev_support = 2 scaffold_24 - intron 8737754-8737865 asmbl_33097,asmbl_33100,asmbl_33101 scaffold_24 - retained_intron 8737754-8737865 asmbl_33099 // Retained and Spliced Intron # retained_intron 8737517-8737605 (orient:-) max_ev_support = 1 # spliced_intron 8737517-8737605 (orient:-) max_ev_support = 2 scaffold_24 - intron 8737517-8737605 asmbl_33097,asmbl_33099,asmbl_33100 scaffold_24 - retained_intron 8737517-8737605 asmbl_33101 // Retained and Spliced Intron # retained_intron 8749383-8749460 (orient:-) max_ev_support = 1 # spliced_intron 8749383-8749460 (orient:-) max_ev_support = 1 scaffold_24 - intron 8749383-8749460 asmbl_33105 scaffold_24 - retained_intron 8749383-8749460 asmbl_33103,asmbl_33104,asmbl_33106,asmbl_33107 // Retained and Spliced Intron # retained_intron 8750513-8750667 (orient:-) max_ev_support = 2 # spliced_intron 8750513-8750667 (orient:-) max_ev_support = 2 scaffold_24 - intron 8750513-8750667 asmbl_33103 scaffold_24 - retained_intron 8750513-8750667 asmbl_33104,asmbl_33106,asmbl_33107 // Retained and Spliced Intron # retained_intron 8950507-8950872 (orient:-) max_ev_support = 2 # spliced_intron 8950507-8950872 (orient:-) max_ev_support = 2 scaffold_24 - intron 8950507-8950872 asmbl_33127 scaffold_24 - retained_intron 8950507-8950872 asmbl_33126 // Exon Skipping and Retention # skipped_exon 9592148-9592961 (orient:-) max_ev_support = 1 # retained_exon 9592748-9592808 (orient:-) max_ev_support = 2 scaffold_24 - retained_exons 9592748-9592808 asmbl_33137 scaffold_24 - intron_skips_exon 9592148-9592961 asmbl_33138 // Exon Skipping and Retention # skipped_exon 9592399-9593170 (orient:-) max_ev_support = 1 # retained_exon 9592748-9593059 (orient:-) max_ev_support = 2 scaffold_24 - retained_exons 9592748-9592808,9592962-9593059 asmbl_33137 scaffold_24 - intron_skips_exon 9592399-9593170 asmbl_33139 // Exon Skipping and Retention # skipped_exon 9591552-9592747 (orient:-) max_ev_support = 2 # retained_exon 9592087-9592147 (orient:-) max_ev_support = 1 scaffold_24 - retained_exons 9592087-9592147 asmbl_33138 scaffold_24 - intron_skips_exon 9591552-9592747 asmbl_33137 // Exon Skipping and Retention # skipped_exon 9953645-9954584 (orient:-) max_ev_support = 1 # retained_exon 9954372-9954494 (orient:-) max_ev_support = 2 scaffold_24 - retained_exons 9954372-9954494 asmbl_33154,asmbl_33155,asmbl_33156,asmbl_33157,asmbl_33161,asmbl_33163 scaffold_24 - intron_skips_exon 9953645-9954584 asmbl_33160,asmbl_33162 // Retained and Spliced Intron # retained_intron 9952112-9952301 (orient:-) max_ev_support = 1 # spliced_intron 9952112-9952301 (orient:-) max_ev_support = 2 scaffold_24 - intron 9952112-9952301 asmbl_33154,asmbl_33157,asmbl_33158 scaffold_24 - retained_intron 9952112-9952301 asmbl_33155,asmbl_33156,asmbl_33159,asmbl_33160,asmbl_33161,asmbl_33162 // Retained and Spliced Intron # retained_intron 9952412-9952699 (orient:-) max_ev_support = 1 # spliced_intron 9952412-9952699 (orient:-) max_ev_support = 1 scaffold_24 - intron 9952412-9952699 asmbl_33158 scaffold_24 - retained_intron 9952412-9952699 asmbl_33159 // Exon Skipping and Retention # skipped_exon 9953362-9954371 (orient:-) max_ev_support = 2 # retained_exon 9953522-9953644 (orient:-) max_ev_support = 1 scaffold_24 - retained_exons 9953522-9953644 asmbl_33160,asmbl_33162 scaffold_24 - intron_skips_exon 9953362-9954371 asmbl_33154,asmbl_33155,asmbl_33156,asmbl_33157,asmbl_33161,asmbl_33163 // Retained and Spliced Intron # retained_intron 10346483-10346648 (orient:-) max_ev_support = 1 # spliced_intron 10346483-10346648 (orient:-) max_ev_support = 1 scaffold_24 - intron 10346483-10346648 asmbl_33182 scaffold_24 - retained_intron 10346483-10346648 asmbl_33181 // Retained and Spliced Intron # retained_intron 10597325-10597404 (orient:-) max_ev_support = 1 # spliced_intron 10597325-10597404 (orient:-) max_ev_support = 2 scaffold_24 - intron 10597325-10597404 asmbl_33211 scaffold_24 - retained_intron 10597325-10597404 asmbl_33213 // Retained and Spliced Intron # retained_intron 10782528-10782651 (orient:-) max_ev_support = 1 # spliced_intron 10782528-10782651 (orient:-) max_ev_support = 2 scaffold_24 - intron 10782528-10782651 asmbl_33218,asmbl_33220,asmbl_33221 scaffold_24 - retained_intron 10782528-10782651 asmbl_33219 // Retained and Spliced Intron # retained_intron 10779531-10779624 (orient:-) max_ev_support = 1 # spliced_intron 10779531-10779624 (orient:-) max_ev_support = 2 scaffold_24 - intron 10779531-10779624 asmbl_33218,asmbl_33219 scaffold_24 - retained_intron 10779531-10779624 asmbl_33220,asmbl_33221 // Retained and Spliced Intron # retained_intron 10778989-10779251 (orient:-) max_ev_support = 1 # spliced_intron 10778989-10779251 (orient:-) max_ev_support = 2 scaffold_24 - intron 10778989-10779251 asmbl_33218,asmbl_33219,asmbl_33220,asmbl_33222 scaffold_24 - retained_intron 10778989-10779251 asmbl_33221 // Retained and Spliced Intron # retained_intron 10779344-10779463 (orient:-) max_ev_support = 1 # spliced_intron 10779344-10779463 (orient:-) max_ev_support = 2 scaffold_24 - intron 10779344-10779463 asmbl_33218,asmbl_33219,asmbl_33220 scaffold_24 - retained_intron 10779344-10779463 asmbl_33221 // Retained and Spliced Intron # retained_intron 10778708-10778819 (orient:-) max_ev_support = 1 # spliced_intron 10778708-10778819 (orient:-) max_ev_support = 2 scaffold_24 - intron 10778708-10778819 asmbl_33218,asmbl_33219,asmbl_33220,asmbl_33221 scaffold_24 - retained_intron 10778708-10778819 asmbl_33222 // Retained and Spliced Intron # retained_intron 101644-101716 (orient:+) max_ev_support = 1 # spliced_intron 101644-101716 (orient:+) max_ev_support = 3 scaffold_25 + intron 101644-101716 asmbl_33314 scaffold_25 + retained_intron 101644-101716 asmbl_33315 // Retained and Spliced Intron # retained_intron 337611-337824 (orient:+) max_ev_support = 1 # spliced_intron 337611-337824 (orient:+) max_ev_support = 1 scaffold_25 + intron 337611-337824 asmbl_33326 scaffold_25 + retained_intron 337611-337824 asmbl_33324 // Exon Skipping and Retention # skipped_exon 400757-401602 (orient:+) max_ev_support = 2 # retained_exon 401316-401327 (orient:+) max_ev_support = 1 scaffold_25 + retained_exons 401316-401327 asmbl_33328 scaffold_25 + intron_skips_exon 400757-401602 asmbl_33327 // Retained and Spliced Intron # retained_intron 978574-978714 (orient:+) max_ev_support = 2 # spliced_intron 978574-978714 (orient:+) max_ev_support = 1 scaffold_25 + intron 978574-978714 asmbl_33359 scaffold_25 + retained_intron 978574-978714 asmbl_33358 // Retained and Spliced Intron # retained_intron 979268-979402 (orient:+) max_ev_support = 2 # spliced_intron 979268-979402 (orient:+) max_ev_support = 1 scaffold_25 + intron 979268-979402 asmbl_33361 scaffold_25 + retained_intron 979268-979402 asmbl_33360 // Retained and Spliced Intron # retained_intron 1437723-1437825 (orient:+) max_ev_support = 2 # spliced_intron 1437723-1437825 (orient:+) max_ev_support = 2 scaffold_25 + intron 1437723-1437825 asmbl_33374 scaffold_25 + retained_intron 1437723-1437825 asmbl_33373 // Retained and Spliced Intron # retained_intron 1440431-1440581 (orient:+) max_ev_support = 3 # spliced_intron 1440431-1440581 (orient:+) max_ev_support = 1 scaffold_25 + intron 1440431-1440581 asmbl_33377 scaffold_25 + retained_intron 1440431-1440581 asmbl_33375,asmbl_33376 // Exon Skipping and Retention # skipped_exon 2638200-2639906 (orient:+) max_ev_support = 1 # retained_exon 2639354-2639653 (orient:+) max_ev_support = 2 scaffold_25 + retained_exons 2639354-2639653 asmbl_33394 scaffold_25 + intron_skips_exon 2638200-2639906 asmbl_33395 // Exon Skipping and Retention # skipped_exon 2689435-2690331 (orient:+) max_ev_support = 1 # retained_exon 2689708-2689825 (orient:+) max_ev_support = 1 scaffold_25 + retained_exons 2689708-2689825 asmbl_33402,asmbl_33404 scaffold_25 + intron_skips_exon 2689435-2690331 asmbl_33403 // Exon Skipping and Retention # skipped_exon 2689826-2691172 (orient:+) max_ev_support = 1 # retained_exon 2690332-2690449 (orient:+) max_ev_support = 1 scaffold_25 + retained_exons 2690332-2690449 asmbl_33403 scaffold_25 + intron_skips_exon 2689826-2691172 asmbl_33402,asmbl_33404 // Retained and Spliced Intron # retained_intron 3615584-3615675 (orient:+) max_ev_support = 1 # spliced_intron 3615584-3615675 (orient:+) max_ev_support = 1 scaffold_25 + intron 3615584-3615675 asmbl_33435 scaffold_25 + retained_intron 3615584-3615675 asmbl_33434 // Exon Skipping and Retention # skipped_exon 3630560-3632886 (orient:+) max_ev_support = 2 # retained_exon 3631293-3631774 (orient:+) max_ev_support = 3 scaffold_25 + retained_exons 3631293-3631411,3631607-3631774 asmbl_33436,asmbl_33437 scaffold_25 + retained_exons 3631293-3631774 asmbl_33440 scaffold_25 + intron_skips_exon 3630560-3632886 asmbl_33438 // Retained and Spliced Intron # retained_intron 3631412-3631606 (orient:+) max_ev_support = 1 # spliced_intron 3631412-3631606 (orient:+) max_ev_support = 3 scaffold_25 + intron 3631412-3631606 asmbl_33436,asmbl_33437 scaffold_25 + retained_intron 3631412-3631606 asmbl_33440 // Retained and Spliced Intron # retained_intron 3709933-3710091 (orient:+) max_ev_support = 4 # spliced_intron 3709933-3710091 (orient:+) max_ev_support = 3 scaffold_25 + intron 3709933-3710091 asmbl_33456 scaffold_25 + retained_intron 3709933-3710091 asmbl_33455 // Exon Skipping and Retention # skipped_exon 3722400-3724710 (orient:+) max_ev_support = 2 # retained_exon 3723384-3723482 (orient:+) max_ev_support = 2 scaffold_25 + retained_exons 3723384-3723482 asmbl_33458 scaffold_25 + intron_skips_exon 3722400-3724710 asmbl_33457,asmbl_33459 // Retained and Spliced Intron # retained_intron 3725793-3725904 (orient:+) max_ev_support = 1 # spliced_intron 3725793-3725904 (orient:+) max_ev_support = 2 scaffold_25 + intron 3725793-3725904 asmbl_33457,asmbl_33458 scaffold_25 + retained_intron 3725793-3725904 asmbl_33459 // Retained and Spliced Intron # retained_intron 3755005-3755481 (orient:+) max_ev_support = 2 # spliced_intron 3755005-3755481 (orient:+) max_ev_support = 3 scaffold_25 + intron 3755005-3755481 asmbl_33462 scaffold_25 + retained_intron 3755005-3755481 asmbl_33463 // Exon Skipping and Retention # skipped_exon 4117889-4118352 (orient:+) max_ev_support = 1 # retained_exon 4117978-4118122 (orient:+) max_ev_support = 2 scaffold_25 + retained_exons 4117978-4118122 asmbl_33474,asmbl_33476 scaffold_25 + intron_skips_exon 4117889-4118352 asmbl_33475 // Retained and Spliced Intron # retained_intron 4289292-4289367 (orient:+) max_ev_support = 2 # spliced_intron 4289292-4289367 (orient:+) max_ev_support = 1 scaffold_25 + intron 4289292-4289367 asmbl_33484 scaffold_25 + retained_intron 4289292-4289367 asmbl_33483 // Retained and Spliced Intron # retained_intron 4319009-4319168 (orient:+) max_ev_support = 3 # spliced_intron 4319009-4319168 (orient:+) max_ev_support = 1 scaffold_25 + intron 4319009-4319168 asmbl_33489,asmbl_33490 scaffold_25 + retained_intron 4319009-4319168 asmbl_33486,asmbl_33487,asmbl_33488 // Exon Skipping and Retention # skipped_exon 4319201-4320037 (orient:+) max_ev_support = 2 # retained_exon 4319475-4319528 (orient:+) max_ev_support = 3 scaffold_25 + retained_exons 4319475-4319528 asmbl_33486,asmbl_33489,asmbl_33490 scaffold_25 + intron_skips_exon 4319201-4320037 asmbl_33487,asmbl_33488 // Retained and Spliced Intron # retained_intron 4441939-4442378 (orient:+) max_ev_support = 3 # spliced_intron 4441939-4442378 (orient:+) max_ev_support = 1 scaffold_25 + intron 4441939-4442378 asmbl_33500 scaffold_25 + retained_intron 4441939-4442378 asmbl_33495 // Retained and Spliced Intron # retained_intron 4442011-4442378 (orient:+) max_ev_support = 3 # spliced_intron 4442011-4442378 (orient:+) max_ev_support = 3 scaffold_25 + intron 4442011-4442378 asmbl_33496,asmbl_33499 scaffold_25 + retained_intron 4442011-4442378 asmbl_33495 // Retained and Spliced Intron # retained_intron 4458047-4458215 (orient:+) max_ev_support = 2 # spliced_intron 4458047-4458215 (orient:+) max_ev_support = 2 scaffold_25 + intron 4458047-4458215 asmbl_33504 scaffold_25 + retained_intron 4458047-4458215 asmbl_33505 // Retained and Spliced Intron # retained_intron 4538956-4539139 (orient:+) max_ev_support = 2 # spliced_intron 4538956-4539139 (orient:+) max_ev_support = 2 scaffold_25 + intron 4538956-4539139 asmbl_33509 scaffold_25 + retained_intron 4538956-4539139 asmbl_33510 // Retained and Spliced Intron # retained_intron 4539033-4539139 (orient:+) max_ev_support = 2 # spliced_intron 4539033-4539139 (orient:+) max_ev_support = 1 scaffold_25 + intron 4539033-4539139 asmbl_33513 scaffold_25 + retained_intron 4539033-4539139 asmbl_33510 // Exon Skipping and Retention # skipped_exon 4575779-4576670 (orient:+) max_ev_support = 3 # retained_exon 4576040-4576177 (orient:+) max_ev_support = 2 scaffold_25 + retained_exons 4576040-4576177 asmbl_33517,asmbl_33518,asmbl_33521,asmbl_33522 scaffold_25 + intron_skips_exon 4575779-4576670 asmbl_33519,asmbl_33523 // Retained and Spliced Intron # retained_intron 4594574-4594648 (orient:+) max_ev_support = 3 # spliced_intron 4594574-4594648 (orient:+) max_ev_support = 3 scaffold_25 + intron 4594574-4594648 asmbl_33524 scaffold_25 + retained_intron 4594574-4594648 asmbl_33525 // Retained and Spliced Intron # retained_intron 4810874-4810995 (orient:+) max_ev_support = 2 # spliced_intron 4810874-4810995 (orient:+) max_ev_support = 3 scaffold_25 + intron 4810874-4810995 asmbl_33530,asmbl_33531,asmbl_33534 scaffold_25 + retained_intron 4810874-4810995 asmbl_33532,asmbl_33533 // Retained and Spliced Intron # retained_intron 4811129-4811361 (orient:+) max_ev_support = 2 # spliced_intron 4811129-4811361 (orient:+) max_ev_support = 3 scaffold_25 + intron 4811129-4811361 asmbl_33530,asmbl_33531,asmbl_33533,asmbl_33534 scaffold_25 + retained_intron 4811129-4811361 asmbl_33532 // Retained and Spliced Intron # retained_intron 4810463-4810690 (orient:+) max_ev_support = 1 # spliced_intron 4810463-4810690 (orient:+) max_ev_support = 3 scaffold_25 + intron 4810463-4810690 asmbl_33531 scaffold_25 + retained_intron 4810463-4810690 asmbl_33534 // Retained and Spliced Intron # retained_intron 4810572-4810690 (orient:+) max_ev_support = 1 # spliced_intron 4810572-4810690 (orient:+) max_ev_support = 3 scaffold_25 + intron 4810572-4810690 asmbl_33530 scaffold_25 + retained_intron 4810572-4810690 asmbl_33534 // Exon Skipping and Retention # skipped_exon 5053997-5054997 (orient:+) max_ev_support = 2 # retained_exon 5054333-5054386 (orient:+) max_ev_support = 2 scaffold_25 + retained_exons 5054333-5054386 asmbl_33557 scaffold_25 + intron_skips_exon 5053997-5054997 asmbl_33558 // Exon Skipping and Retention # skipped_exon 5428517-5429201 (orient:+) max_ev_support = 1 # retained_exon 5428901-5428964 (orient:+) max_ev_support = 2 scaffold_25 + retained_exons 5428901-5428964 asmbl_33563 scaffold_25 + intron_skips_exon 5428517-5429201 asmbl_33565 // Retained and Spliced Intron # retained_intron 5776337-5776529 (orient:+) max_ev_support = 1 # spliced_intron 5776337-5776529 (orient:+) max_ev_support = 1 scaffold_25 + intron 5776337-5776529 asmbl_33581 scaffold_25 + retained_intron 5776337-5776529 asmbl_33577,asmbl_33580 // Retained and Spliced Intron # retained_intron 5776575-5776928 (orient:+) max_ev_support = 2 # spliced_intron 5776575-5776928 (orient:+) max_ev_support = 1 scaffold_25 + intron 5776575-5776928 asmbl_33580,asmbl_33581 scaffold_25 + retained_intron 5776575-5776928 asmbl_33577 // Retained and Spliced Intron # retained_intron 6253172-6253303 (orient:+) max_ev_support = 2 # spliced_intron 6253172-6253303 (orient:+) max_ev_support = 2 scaffold_25 + intron 6253172-6253303 asmbl_33604,asmbl_33605,asmbl_33606 scaffold_25 + retained_intron 6253172-6253303 asmbl_33603 // Retained and Spliced Intron # retained_intron 6253400-6253539 (orient:+) max_ev_support = 2 # spliced_intron 6253400-6253539 (orient:+) max_ev_support = 2 scaffold_25 + intron 6253400-6253539 asmbl_33605,asmbl_33606 scaffold_25 + retained_intron 6253400-6253539 asmbl_33603,asmbl_33604 // Retained and Spliced Intron # retained_intron 6253628-6253853 (orient:+) max_ev_support = 4 # spliced_intron 6253628-6253853 (orient:+) max_ev_support = 2 scaffold_25 + intron 6253628-6253853 asmbl_33606 scaffold_25 + retained_intron 6253628-6253853 asmbl_33603,asmbl_33604,asmbl_33605 // Retained and Spliced Intron # retained_intron 6303359-6303523 (orient:+) max_ev_support = 2 # spliced_intron 6303359-6303523 (orient:+) max_ev_support = 1 scaffold_25 + intron 6303359-6303523 asmbl_33609,asmbl_33614 scaffold_25 + retained_intron 6303359-6303523 asmbl_33607,asmbl_33615,asmbl_33616,asmbl_33617,asmbl_33618 // Retained and Spliced Intron # retained_intron 6301207-6301328 (orient:+) max_ev_support = 1 # spliced_intron 6301207-6301328 (orient:+) max_ev_support = 2 scaffold_25 + intron 6301207-6301328 asmbl_33607,asmbl_33614,asmbl_33615 scaffold_25 + retained_intron 6301207-6301328 asmbl_33609,asmbl_33616,asmbl_33617,asmbl_33618 // Retained and Spliced Intron # retained_intron 6302449-6302790 (orient:+) max_ev_support = 1 # spliced_intron 6302449-6302790 (orient:+) max_ev_support = 2 scaffold_25 + intron 6302449-6302790 asmbl_33607,asmbl_33609,asmbl_33615,asmbl_33616,asmbl_33617 scaffold_25 + retained_intron 6302449-6302790 asmbl_33614,asmbl_33618 // Retained and Spliced Intron # retained_intron 6302876-6303091 (orient:+) max_ev_support = 1 # spliced_intron 6302876-6303091 (orient:+) max_ev_support = 2 scaffold_25 + intron 6302876-6303091 asmbl_33607,asmbl_33609,asmbl_33615,asmbl_33616,asmbl_33617,asmbl_33618 scaffold_25 + retained_intron 6302876-6303091 asmbl_33614 // Retained and Spliced Intron # retained_intron 6303553-6303774 (orient:+) max_ev_support = 1 # spliced_intron 6303553-6303774 (orient:+) max_ev_support = 2 scaffold_25 + intron 6303553-6303774 asmbl_33607,asmbl_33609,asmbl_33614,asmbl_33617 scaffold_25 + retained_intron 6303553-6303774 asmbl_33615,asmbl_33616,asmbl_33618 // Exon Skipping and Retention # skipped_exon 6437223-6438668 (orient:+) max_ev_support = 1 # retained_exon 6438069-6438157 (orient:+) max_ev_support = 2 scaffold_25 + retained_exons 6438069-6438157 asmbl_33628 scaffold_25 + intron_skips_exon 6437223-6438668 asmbl_33630 // Exon Skipping and Retention # skipped_exon 6769681-6771338 (orient:+) max_ev_support = 1 # retained_exon 6770175-6770224 (orient:+) max_ev_support = 1 scaffold_25 + retained_exons 6770175-6770224 asmbl_33646 scaffold_25 + intron_skips_exon 6769681-6771338 asmbl_33647 // Exon Skipping and Retention # skipped_exon 7342027-7342470 (orient:+) max_ev_support = 1 # retained_exon 7342152-7342277 (orient:+) max_ev_support = 3 scaffold_25 + retained_exons 7342152-7342277 asmbl_33671 scaffold_25 + intron_skips_exon 7342027-7342470 asmbl_33672 // Exon Skipping and Retention # skipped_exon 7342027-7343333 (orient:+) max_ev_support = 1 # retained_exon 7342152-7343226 (orient:+) max_ev_support = 3 scaffold_25 + retained_exons 7342152-7342277,7342471-7342532,7342878-7343008,7343163-7343226 asmbl_33671 scaffold_25 + intron_skips_exon 7342027-7343333 asmbl_33673 // Retained and Spliced Intron # retained_intron 7878592-7878745 (orient:+) max_ev_support = 1 # spliced_intron 7878592-7878745 (orient:+) max_ev_support = 1 scaffold_25 + intron 7878592-7878745 asmbl_33686 scaffold_25 + retained_intron 7878592-7878745 asmbl_33685 // Retained and Spliced Intron # retained_intron 7903393-7903604 (orient:+) max_ev_support = 3 # spliced_intron 7903393-7903604 (orient:+) max_ev_support = 2 scaffold_25 + intron 7903393-7903604 asmbl_33690 scaffold_25 + retained_intron 7903393-7903604 asmbl_33689 // Retained and Spliced Intron # retained_intron 8476570-8476690 (orient:+) max_ev_support = 1 # spliced_intron 8476570-8476690 (orient:+) max_ev_support = 2 scaffold_25 + intron 8476570-8476690 asmbl_33737,asmbl_33739 scaffold_25 + retained_intron 8476570-8476690 asmbl_33738 // Retained and Spliced Intron # retained_intron 8475662-8475908 (orient:+) max_ev_support = 1 # spliced_intron 8475662-8475908 (orient:+) max_ev_support = 2 scaffold_25 + intron 8475662-8475908 asmbl_33737,asmbl_33738 scaffold_25 + retained_intron 8475662-8475908 asmbl_33739 // Exon Skipping and Retention # skipped_exon 8668191-8669550 (orient:+) max_ev_support = 2 # retained_exon 8668702-8668797 (orient:+) max_ev_support = 2 scaffold_25 + retained_exons 8668702-8668797 asmbl_33741 scaffold_25 + intron_skips_exon 8668191-8669550 asmbl_33740 // Retained and Spliced Intron # retained_intron 8680664-8680776 (orient:+) max_ev_support = 2 # spliced_intron 8680664-8680776 (orient:+) max_ev_support = 2 scaffold_25 + intron 8680664-8680776 asmbl_33745 scaffold_25 + retained_intron 8680664-8680776 asmbl_33746 // Retained and Spliced Intron # retained_intron 8705312-8706427 (orient:+) max_ev_support = 2 # spliced_intron 8705312-8706427 (orient:+) max_ev_support = 1 scaffold_25 + intron 8705312-8706427 asmbl_33757 scaffold_25 + retained_intron 8705312-8706427 asmbl_33751,asmbl_33754,asmbl_33758 // Retained and Spliced Intron # retained_intron 8705312-8707289 (orient:+) max_ev_support = 3 # spliced_intron 8705312-8707289 (orient:+) max_ev_support = 1 scaffold_25 + intron 8705312-8707289 asmbl_33756,asmbl_33759 scaffold_25 + retained_intron 8705312-8707289 asmbl_33751 // Retained and Spliced Intron # retained_intron 8705024-8705177 (orient:+) max_ev_support = 2 # spliced_intron 8705024-8705177 (orient:+) max_ev_support = 1 scaffold_25 + intron 8705024-8705177 asmbl_33758,asmbl_33759 scaffold_25 + retained_intron 8705024-8705177 asmbl_33753,asmbl_33754 // Exon Skipping and Retention # skipped_exon 8705312-8707661 (orient:+) max_ev_support = 2 # retained_exon 8707290-8707409 (orient:+) max_ev_support = 1 scaffold_25 + retained_exons 8707290-8707409 asmbl_33756,asmbl_33759 scaffold_25 + intron_skips_exon 8705312-8707661 asmbl_33752,asmbl_33753 // Retained and Spliced Intron # retained_intron 8707410-8707661 (orient:+) max_ev_support = 1 # spliced_intron 8707410-8707661 (orient:+) max_ev_support = 2 scaffold_25 + intron 8707410-8707661 asmbl_33751,asmbl_33756,asmbl_33759 scaffold_25 + retained_intron 8707410-8707661 asmbl_33760 // Retained and Spliced Intron # retained_intron 8726199-8726312 (orient:+) max_ev_support = 1 # spliced_intron 8726199-8726312 (orient:+) max_ev_support = 2 scaffold_25 + intron 8726199-8726312 asmbl_33761 scaffold_25 + retained_intron 8726199-8726312 asmbl_33762 // Retained and Spliced Intron # retained_intron 9090794-9090907 (orient:+) max_ev_support = 2 # spliced_intron 9090794-9090907 (orient:+) max_ev_support = 1 scaffold_25 + intron 9090794-9090907 asmbl_33780,asmbl_33781 scaffold_25 + retained_intron 9090794-9090907 asmbl_33779 // Exon Skipping and Retention # skipped_exon 9119292-9120105 (orient:+) max_ev_support = 1 # retained_exon 9119662-9119772 (orient:+) max_ev_support = 1 scaffold_25 + retained_exons 9119662-9119772 asmbl_33782 scaffold_25 + intron_skips_exon 9119292-9120105 asmbl_33783 // Exon Skipping and Retention # skipped_exon 9119255-9119846 (orient:+) max_ev_support = 1 # retained_exon 9119662-9119772 (orient:+) max_ev_support = 1 scaffold_25 + retained_exons 9119662-9119772 asmbl_33782 scaffold_25 + intron_skips_exon 9119255-9119846 asmbl_33786,asmbl_33787 // Retained and Spliced Intron # retained_intron 9119958-9120031 (orient:+) max_ev_support = 1 # spliced_intron 9119958-9120031 (orient:+) max_ev_support = 1 scaffold_25 + intron 9119958-9120031 asmbl_33787 scaffold_25 + retained_intron 9119958-9120031 asmbl_33786 // Exon Skipping and Retention # skipped_exon 9119773-9120068 (orient:+) max_ev_support = 1 # retained_exon 9119847-9119957 (orient:+) max_ev_support = 1 scaffold_25 + retained_exons 9119847-9119957 asmbl_33787 scaffold_25 + intron_skips_exon 9119773-9120068 asmbl_33782 // Retained and Spliced Intron # retained_intron 9291594-9291672 (orient:+) max_ev_support = 2 # spliced_intron 9291594-9291672 (orient:+) max_ev_support = 2 scaffold_25 + intron 9291594-9291672 asmbl_33803 scaffold_25 + retained_intron 9291594-9291672 asmbl_33804 // Retained and Spliced Intron # retained_intron 9292426-9292453 (orient:+) max_ev_support = 2 # spliced_intron 9292426-9292453 (orient:+) max_ev_support = 1 scaffold_25 + intron 9292426-9292453 asmbl_33803 scaffold_25 + retained_intron 9292426-9292453 asmbl_33805 // Retained and Spliced Intron # retained_intron 9338119-9338227 (orient:+) max_ev_support = 1 # spliced_intron 9338119-9338227 (orient:+) max_ev_support = 2 scaffold_25 + intron 9338119-9338227 asmbl_33807,asmbl_33808 scaffold_25 + retained_intron 9338119-9338227 asmbl_33809 // Retained and Spliced Intron # retained_intron 9337552-9337746 (orient:+) max_ev_support = 1 # spliced_intron 9337552-9337746 (orient:+) max_ev_support = 2 scaffold_25 + intron 9337552-9337746 asmbl_33808,asmbl_33809,asmbl_33811 scaffold_25 + retained_intron 9337552-9337746 asmbl_33810 // Retained and Spliced Intron # retained_intron 9337633-9337746 (orient:+) max_ev_support = 1 # spliced_intron 9337633-9337746 (orient:+) max_ev_support = 2 scaffold_25 + intron 9337633-9337746 asmbl_33807 scaffold_25 + retained_intron 9337633-9337746 asmbl_33810 // Retained and Spliced Intron # retained_intron 9336651-9337098 (orient:+) max_ev_support = 1 # spliced_intron 9336651-9337098 (orient:+) max_ev_support = 2 scaffold_25 + intron 9336651-9337098 asmbl_33807,asmbl_33808,asmbl_33809,asmbl_33810 scaffold_25 + retained_intron 9336651-9337098 asmbl_33811 // Retained and Spliced Intron # retained_intron 9431822-9432003 (orient:+) max_ev_support = 2 # spliced_intron 9431822-9432003 (orient:+) max_ev_support = 1 scaffold_25 + intron 9431822-9432003 asmbl_33816 scaffold_25 + retained_intron 9431822-9432003 asmbl_33814 // Retained and Spliced Intron # retained_intron 9450215-9450348 (orient:+) max_ev_support = 1 # spliced_intron 9450215-9450348 (orient:+) max_ev_support = 2 scaffold_25 + intron 9450215-9450348 asmbl_33817,asmbl_33818,asmbl_33820 scaffold_25 + retained_intron 9450215-9450348 asmbl_33819 // Retained and Spliced Intron # retained_intron 9554175-9556117 (orient:+) max_ev_support = 1 # spliced_intron 9554175-9556117 (orient:+) max_ev_support = 2 scaffold_25 + intron 9554175-9556117 asmbl_33830 scaffold_25 + retained_intron 9554175-9556117 asmbl_33831,asmbl_33832 // Retained and Spliced Intron # retained_intron 185266-185787 (orient:-) max_ev_support = 2 # spliced_intron 185266-185787 (orient:-) max_ev_support = 3 scaffold_25 - intron 185266-185787 asmbl_33955 scaffold_25 - retained_intron 185266-185787 asmbl_33956 // Retained and Spliced Intron # retained_intron 339732-339809 (orient:-) max_ev_support = 1 # spliced_intron 339732-339809 (orient:-) max_ev_support = 1 scaffold_25 - intron 339732-339809 asmbl_33970 scaffold_25 - retained_intron 339732-339809 asmbl_33971 // Retained and Spliced Intron # retained_intron 362923-362986 (orient:-) max_ev_support = 1 # spliced_intron 362923-362986 (orient:-) max_ev_support = 1 scaffold_25 - intron 362923-362986 asmbl_33976 scaffold_25 - retained_intron 362923-362986 asmbl_33975 // Retained and Spliced Intron # retained_intron 406193-406237 (orient:-) max_ev_support = 1 # spliced_intron 406193-406237 (orient:-) max_ev_support = 1 scaffold_25 - intron 406193-406237 asmbl_33978 scaffold_25 - retained_intron 406193-406237 asmbl_33979 // Exon Skipping and Retention # skipped_exon 637428-638058 (orient:-) max_ev_support = 2 # retained_exon 637688-637796 (orient:-) max_ev_support = 1 scaffold_25 - retained_exons 637688-637796 asmbl_33995 scaffold_25 - intron_skips_exon 637428-638058 asmbl_33994 // Retained and Spliced Intron # retained_intron 801994-802101 (orient:-) max_ev_support = 3 # spliced_intron 801994-802101 (orient:-) max_ev_support = 1 scaffold_25 - intron 801994-802101 asmbl_34001,asmbl_34002,asmbl_34004 scaffold_25 - retained_intron 801994-802101 asmbl_34000 // Retained and Spliced Intron # retained_intron 996826-996894 (orient:-) max_ev_support = 1 # spliced_intron 996826-996894 (orient:-) max_ev_support = 2 scaffold_25 - intron 996826-996894 asmbl_34016,asmbl_34019 scaffold_25 - retained_intron 996826-996894 asmbl_34018 // Retained and Spliced Intron # retained_intron 994851-995030 (orient:-) max_ev_support = 1 # spliced_intron 994851-995030 (orient:-) max_ev_support = 2 scaffold_25 - intron 994851-995030 asmbl_34016,asmbl_34017,asmbl_34018 scaffold_25 - retained_intron 994851-995030 asmbl_34019 // Retained and Spliced Intron # retained_intron 1906533-1906576 (orient:-) max_ev_support = 1 # spliced_intron 1906533-1906576 (orient:-) max_ev_support = 1 scaffold_25 - intron 1906533-1906576 asmbl_34056 scaffold_25 - retained_intron 1906533-1906576 asmbl_34053 // Retained and Spliced Intron # retained_intron 1903565-1903665 (orient:-) max_ev_support = 1 # spliced_intron 1903565-1903665 (orient:-) max_ev_support = 1 scaffold_25 - intron 1903565-1903665 asmbl_34055 scaffold_25 - retained_intron 1903565-1903665 asmbl_34054 // Retained and Spliced Intron # retained_intron 3084202-3084656 (orient:-) max_ev_support = 3 # spliced_intron 3084202-3084656 (orient:-) max_ev_support = 1 scaffold_25 - intron 3084202-3084656 asmbl_34091 scaffold_25 - retained_intron 3084202-3084656 asmbl_34086 // Retained and Spliced Intron # retained_intron 3084205-3084650 (orient:-) max_ev_support = 3 # spliced_intron 3084205-3084650 (orient:-) max_ev_support = 1 scaffold_25 - intron 3084205-3084650 asmbl_34093 scaffold_25 - retained_intron 3084205-3084650 asmbl_34086 // Retained and Spliced Intron # retained_intron 3084205-3084656 (orient:-) max_ev_support = 3 # spliced_intron 3084205-3084656 (orient:-) max_ev_support = 1 scaffold_25 - intron 3084205-3084656 asmbl_34088,asmbl_34089,asmbl_34090,asmbl_34092 scaffold_25 - retained_intron 3084205-3084656 asmbl_34086 // Retained and Spliced Intron # retained_intron 3095414-3095695 (orient:-) max_ev_support = 1 # spliced_intron 3095414-3095695 (orient:-) max_ev_support = 1 scaffold_25 - intron 3095414-3095695 asmbl_34090,asmbl_34092 scaffold_25 - retained_intron 3095414-3095695 asmbl_34089 // Exon Skipping and Retention # skipped_exon 3095414-3096909 (orient:-) max_ev_support = 1 # retained_exon 3095696-3095836 (orient:-) max_ev_support = 1 scaffold_25 - retained_exons 3095696-3095836 asmbl_34090,asmbl_34092 scaffold_25 - intron_skips_exon 3095414-3096909 asmbl_34093 // Retained and Spliced Intron # retained_intron 3186833-3186999 (orient:-) max_ev_support = 2 # spliced_intron 3186833-3186999 (orient:-) max_ev_support = 2 scaffold_25 - intron 3186833-3186999 asmbl_34111,asmbl_34112 scaffold_25 - retained_intron 3186833-3186999 asmbl_34110,asmbl_34113 // Exon Skipping and Retention # skipped_exon 3292205-3293927 (orient:-) max_ev_support = 2 # retained_exon 3293326-3293378 (orient:-) max_ev_support = 2 scaffold_25 - retained_exons 3293326-3293378 asmbl_34118 scaffold_25 - intron_skips_exon 3292205-3293927 asmbl_34120 // Retained and Spliced Intron # retained_intron 3712653-3712743 (orient:-) max_ev_support = 1 # spliced_intron 3712653-3712743 (orient:-) max_ev_support = 2 scaffold_25 - intron 3712653-3712743 asmbl_34149 scaffold_25 - retained_intron 3712653-3712743 asmbl_34150 // Retained and Spliced Intron # retained_intron 3737855-3737965 (orient:-) max_ev_support = 1 # spliced_intron 3737855-3737965 (orient:-) max_ev_support = 2 scaffold_25 - intron 3737855-3737965 asmbl_34151 scaffold_25 - retained_intron 3737855-3737965 asmbl_34153 // Retained and Spliced Intron # retained_intron 3738082-3738200 (orient:-) max_ev_support = 1 # spliced_intron 3738082-3738200 (orient:-) max_ev_support = 2 scaffold_25 - intron 3738082-3738200 asmbl_34151 scaffold_25 - retained_intron 3738082-3738200 asmbl_34153 // Exon Skipping and Retention # skipped_exon 3820067-3820402 (orient:-) max_ev_support = 2 # retained_exon 3820184-3820299 (orient:-) max_ev_support = 3 scaffold_25 - retained_exons 3820184-3820299 asmbl_34157,asmbl_34158 scaffold_25 - intron_skips_exon 3820067-3820402 asmbl_34159 // Retained and Spliced Intron # retained_intron 3820300-3820402 (orient:-) max_ev_support = 2 # spliced_intron 3820300-3820402 (orient:-) max_ev_support = 3 scaffold_25 - intron 3820300-3820402 asmbl_34157,asmbl_34158 scaffold_25 - retained_intron 3820300-3820402 asmbl_34160 // Exon Skipping and Retention # skipped_exon 4332946-4335709 (orient:-) max_ev_support = 2 # retained_exon 4334269-4334343 (orient:-) max_ev_support = 2 scaffold_25 - retained_exons 4334269-4334343 asmbl_34181 scaffold_25 - intron_skips_exon 4332946-4335709 asmbl_34182 // Exon Skipping and Retention # skipped_exon 4467225-4469133 (orient:-) max_ev_support = 1 # retained_exon 4467883-4467984 (orient:-) max_ev_support = 1 scaffold_25 - retained_exons 4467883-4467984 asmbl_34192 scaffold_25 - intron_skips_exon 4467225-4469133 asmbl_34191 // Retained and Spliced Intron # retained_intron 4549453-4549681 (orient:-) max_ev_support = 1 # spliced_intron 4549453-4549681 (orient:-) max_ev_support = 2 scaffold_25 - intron 4549453-4549681 asmbl_34209 scaffold_25 - retained_intron 4549453-4549681 asmbl_34211 // Retained and Spliced Intron # retained_intron 4871626-4872194 (orient:-) max_ev_support = 2 # spliced_intron 4871626-4872194 (orient:-) max_ev_support = 2 scaffold_25 - intron 4871626-4872194 asmbl_34230,asmbl_34235 scaffold_25 - retained_intron 4871626-4872194 asmbl_34231 // Exon Skipping and Retention # skipped_exon 5156185-5156941 (orient:-) max_ev_support = 1 # retained_exon 5156803-5156837 (orient:-) max_ev_support = 2 scaffold_25 - retained_exons 5156803-5156837 asmbl_34244,asmbl_34246,asmbl_34247,asmbl_34248,asmbl_34250,asmbl_34251 scaffold_25 - intron_skips_exon 5156185-5156941 asmbl_34249 // Retained and Spliced Intron # retained_intron 5157955-5158050 (orient:-) max_ev_support = 1 # spliced_intron 5157955-5158050 (orient:-) max_ev_support = 1 scaffold_25 - intron 5157955-5158050 asmbl_34251 scaffold_25 - retained_intron 5157955-5158050 asmbl_34247 // Retained and Spliced Intron # retained_intron 5157955-5158103 (orient:-) max_ev_support = 1 # spliced_intron 5157955-5158103 (orient:-) max_ev_support = 2 scaffold_25 - intron 5157955-5158103 asmbl_34244,asmbl_34246,asmbl_34249,asmbl_34250 scaffold_25 - retained_intron 5157955-5158103 asmbl_34247 // Retained and Spliced Intron # retained_intron 5158232-5158408 (orient:-) max_ev_support = 1 # spliced_intron 5158232-5158408 (orient:-) max_ev_support = 1 scaffold_25 - intron 5158232-5158408 asmbl_34249 scaffold_25 - retained_intron 5158232-5158408 asmbl_34247 // Retained and Spliced Intron # retained_intron 5158234-5158408 (orient:-) max_ev_support = 1 # spliced_intron 5158234-5158408 (orient:-) max_ev_support = 2 scaffold_25 - intron 5158234-5158408 asmbl_34244,asmbl_34250 scaffold_25 - retained_intron 5158234-5158408 asmbl_34247 // Retained and Spliced Intron # retained_intron 5158255-5158408 (orient:-) max_ev_support = 1 # spliced_intron 5158255-5158408 (orient:-) max_ev_support = 2 scaffold_25 - intron 5158255-5158408 asmbl_34246 scaffold_25 - retained_intron 5158255-5158408 asmbl_34247 // Retained and Spliced Intron # retained_intron 5377112-5377334 (orient:-) max_ev_support = 3 # spliced_intron 5377112-5377334 (orient:-) max_ev_support = 2 scaffold_25 - intron 5377112-5377334 asmbl_34253 scaffold_25 - retained_intron 5377112-5377334 asmbl_34252 // Exon Skipping and Retention # skipped_exon 5618720-5619610 (orient:-) max_ev_support = 1 # retained_exon 5619083-5619182 (orient:-) max_ev_support = 2 scaffold_25 - retained_exons 5619083-5619182 asmbl_34268 scaffold_25 - intron_skips_exon 5618720-5619610 asmbl_34269 // Exon Skipping and Retention # skipped_exon 5625718-5626514 (orient:-) max_ev_support = 1 # retained_exon 5625918-5625976 (orient:-) max_ev_support = 2 scaffold_25 - retained_exons 5625918-5625976 asmbl_34270 scaffold_25 - intron_skips_exon 5625718-5626514 asmbl_34273 // Retained and Spliced Intron # retained_intron 5625977-5626514 (orient:-) max_ev_support = 2 # spliced_intron 5625977-5626514 (orient:-) max_ev_support = 2 scaffold_25 - intron 5625977-5626514 asmbl_34270 scaffold_25 - retained_intron 5625977-5626514 asmbl_34271,asmbl_34272 // Retained and Spliced Intron # retained_intron 5696565-5696676 (orient:-) max_ev_support = 1 # spliced_intron 5696565-5696676 (orient:-) max_ev_support = 2 scaffold_25 - intron 5696565-5696676 asmbl_34275,asmbl_34278 scaffold_25 - retained_intron 5696565-5696676 asmbl_34276 // Exon Skipping and Retention # skipped_exon 5827048-5828229 (orient:-) max_ev_support = 1 # retained_exon 5827636-5827769 (orient:-) max_ev_support = 1 scaffold_25 - retained_exons 5827636-5827769 asmbl_34287,asmbl_34288,asmbl_34290,asmbl_34296 scaffold_25 - intron_skips_exon 5827048-5828229 asmbl_34293,asmbl_34294 // Exon Skipping and Retention # skipped_exon 5828532-5829193 (orient:-) max_ev_support = 1 # retained_exon 5828682-5829053 (orient:-) max_ev_support = 3 scaffold_25 - retained_exons 5828682-5828737,5828915-5829053 asmbl_34287,asmbl_34288,asmbl_34291,asmbl_34292,asmbl_34293,asmbl_34294 scaffold_25 - intron_skips_exon 5828532-5829193 asmbl_34289,asmbl_34290 // Retained and Spliced Intron # retained_intron 5827048-5827635 (orient:-) max_ev_support = 1 # spliced_intron 5827048-5827635 (orient:-) max_ev_support = 1 scaffold_25 - intron 5827048-5827635 asmbl_34287,asmbl_34288,asmbl_34290,asmbl_34291,asmbl_34296 scaffold_25 - retained_intron 5827048-5827635 asmbl_34295,asmbl_34297 // Retained and Spliced Intron # retained_intron 5827048-5827724 (orient:-) max_ev_support = 1 # spliced_intron 5827048-5827724 (orient:-) max_ev_support = 1 scaffold_25 - intron 5827048-5827724 asmbl_34289,asmbl_34292 scaffold_25 - retained_intron 5827048-5827724 asmbl_34295,asmbl_34297 // Retained and Spliced Intron # retained_intron 5827048-5828229 (orient:-) max_ev_support = 1 # spliced_intron 5827048-5828229 (orient:-) max_ev_support = 1 scaffold_25 - intron 5827048-5828229 asmbl_34293,asmbl_34294 scaffold_25 - retained_intron 5827048-5828229 asmbl_34295 // Retained and Spliced Intron # retained_intron 5827765-5828229 (orient:-) max_ev_support = 1 # spliced_intron 5827765-5828229 (orient:-) max_ev_support = 1 scaffold_25 - intron 5827765-5828229 asmbl_34291 scaffold_25 - retained_intron 5827765-5828229 asmbl_34295 // Retained and Spliced Intron # retained_intron 5827770-5828229 (orient:-) max_ev_support = 1 # spliced_intron 5827770-5828229 (orient:-) max_ev_support = 1 scaffold_25 - intron 5827770-5828229 asmbl_34287,asmbl_34288,asmbl_34289,asmbl_34290,asmbl_34292,asmbl_34296 scaffold_25 - retained_intron 5827770-5828229 asmbl_34295 // Retained and Spliced Intron # retained_intron 5828116-5828229 (orient:-) max_ev_support = 1 # spliced_intron 5828116-5828229 (orient:-) max_ev_support = 1 scaffold_25 - intron 5828116-5828229 asmbl_34297 scaffold_25 - retained_intron 5828116-5828229 asmbl_34295 // Retained and Spliced Intron # retained_intron 5828532-5828681 (orient:-) max_ev_support = 1 # spliced_intron 5828532-5828681 (orient:-) max_ev_support = 3 scaffold_25 - intron 5828532-5828681 asmbl_34287,asmbl_34288,asmbl_34291,asmbl_34292,asmbl_34293,asmbl_34294 scaffold_25 - retained_intron 5828532-5828681 asmbl_34297 // Retained and Spliced Intron # retained_intron 5828738-5828914 (orient:-) max_ev_support = 1 # spliced_intron 5828738-5828914 (orient:-) max_ev_support = 3 scaffold_25 - intron 5828738-5828914 asmbl_34287,asmbl_34288,asmbl_34291,asmbl_34292,asmbl_34293,asmbl_34294 scaffold_25 - retained_intron 5828738-5828914 asmbl_34297 // Retained and Spliced Intron # retained_intron 6038950-6039040 (orient:-) max_ev_support = 1 # spliced_intron 6038950-6039040 (orient:-) max_ev_support = 2 scaffold_25 - intron 6038950-6039040 asmbl_34310,asmbl_34311 scaffold_25 - retained_intron 6038950-6039040 asmbl_34312 // Retained and Spliced Intron # retained_intron 6067602-6068378 (orient:-) max_ev_support = 2 # spliced_intron 6067602-6068378 (orient:-) max_ev_support = 2 scaffold_25 - intron 6067602-6068378 asmbl_34317,asmbl_34319,asmbl_34320,asmbl_34321,asmbl_34322 scaffold_25 - retained_intron 6067602-6068378 asmbl_34318,asmbl_34324 // Retained and Spliced Intron # retained_intron 6068856-6068946 (orient:-) max_ev_support = 1 # spliced_intron 6068856-6068946 (orient:-) max_ev_support = 2 scaffold_25 - intron 6068856-6068946 asmbl_34317,asmbl_34318,asmbl_34320,asmbl_34321,asmbl_34322,asmbl_34324 scaffold_25 - retained_intron 6068856-6068946 asmbl_34319 // Retained and Spliced Intron # retained_intron 6066072-6066195 (orient:-) max_ev_support = 1 # spliced_intron 6066072-6066195 (orient:-) max_ev_support = 2 scaffold_25 - intron 6066072-6066195 asmbl_34317,asmbl_34318,asmbl_34319,asmbl_34321,asmbl_34324 scaffold_25 - retained_intron 6066072-6066195 asmbl_34320,asmbl_34322 // Retained and Spliced Intron # retained_intron 6066560-6066726 (orient:-) max_ev_support = 1 # spliced_intron 6066560-6066726 (orient:-) max_ev_support = 2 scaffold_25 - intron 6066560-6066726 asmbl_34317,asmbl_34318,asmbl_34319,asmbl_34320,asmbl_34324 scaffold_25 - retained_intron 6066560-6066726 asmbl_34321,asmbl_34322 // Retained and Spliced Intron # retained_intron 6066916-6067033 (orient:-) max_ev_support = 1 # spliced_intron 6066916-6067033 (orient:-) max_ev_support = 2 scaffold_25 - intron 6066916-6067033 asmbl_34317,asmbl_34318,asmbl_34319,asmbl_34320,asmbl_34322,asmbl_34324 scaffold_25 - retained_intron 6066916-6067033 asmbl_34321 // Retained and Spliced Intron # retained_intron 6297787-6298085 (orient:-) max_ev_support = 2 # spliced_intron 6297787-6298085 (orient:-) max_ev_support = 1 scaffold_25 - intron 6297787-6298085 asmbl_34345 scaffold_25 - retained_intron 6297787-6298085 asmbl_34342 // Retained and Spliced Intron # retained_intron 6311971-6313061 (orient:-) max_ev_support = 2 # spliced_intron 6311971-6313061 (orient:-) max_ev_support = 1 scaffold_25 - intron 6311971-6313061 asmbl_34350 scaffold_25 - retained_intron 6311971-6313061 asmbl_34351 // Retained and Spliced Intron # retained_intron 6311974-6313061 (orient:-) max_ev_support = 2 # spliced_intron 6311974-6313061 (orient:-) max_ev_support = 2 scaffold_25 - intron 6311974-6313061 asmbl_34349 scaffold_25 - retained_intron 6311974-6313061 asmbl_34351 // Retained and Spliced Intron # retained_intron 6324156-6324245 (orient:-) max_ev_support = 2 # spliced_intron 6324156-6324245 (orient:-) max_ev_support = 2 scaffold_25 - intron 6324156-6324245 asmbl_34356,asmbl_34359 scaffold_25 - retained_intron 6324156-6324245 asmbl_34357,asmbl_34360 // Retained and Spliced Intron # retained_intron 6325646-6326095 (orient:-) max_ev_support = 2 # spliced_intron 6325646-6326095 (orient:-) max_ev_support = 2 scaffold_25 - intron 6325646-6326095 asmbl_34356,asmbl_34357,asmbl_34361,asmbl_34362 scaffold_25 - retained_intron 6325646-6326095 asmbl_34358 // Retained and Spliced Intron # retained_intron 6324446-6324641 (orient:-) max_ev_support = 1 # spliced_intron 6324446-6324641 (orient:-) max_ev_support = 2 scaffold_25 - intron 6324446-6324641 asmbl_34356,asmbl_34357,asmbl_34359,asmbl_34360 scaffold_25 - retained_intron 6324446-6324641 asmbl_34361,asmbl_34362 // Retained and Spliced Intron # retained_intron 6324770-6324860 (orient:-) max_ev_support = 1 # spliced_intron 6324770-6324860 (orient:-) max_ev_support = 2 scaffold_25 - intron 6324770-6324860 asmbl_34356,asmbl_34357,asmbl_34359,asmbl_34360 scaffold_25 - retained_intron 6324770-6324860 asmbl_34361,asmbl_34362 // Retained and Spliced Intron # retained_intron 6325008-6325126 (orient:-) max_ev_support = 1 # spliced_intron 6325008-6325126 (orient:-) max_ev_support = 2 scaffold_25 - intron 6325008-6325126 asmbl_34356,asmbl_34357,asmbl_34359,asmbl_34360,asmbl_34362 scaffold_25 - retained_intron 6325008-6325126 asmbl_34361 // Retained and Spliced Intron # retained_intron 6525745-6525968 (orient:-) max_ev_support = 1 # spliced_intron 6525745-6525968 (orient:-) max_ev_support = 1 scaffold_25 - intron 6525745-6525968 asmbl_34364 scaffold_25 - retained_intron 6525745-6525968 asmbl_34365 // Retained and Spliced Intron # retained_intron 6525867-6525968 (orient:-) max_ev_support = 1 # spliced_intron 6525867-6525968 (orient:-) max_ev_support = 1 scaffold_25 - intron 6525867-6525968 asmbl_34366 scaffold_25 - retained_intron 6525867-6525968 asmbl_34365 // Retained and Spliced Intron # retained_intron 7220041-7220502 (orient:-) max_ev_support = 1 # spliced_intron 7220041-7220502 (orient:-) max_ev_support = 1 scaffold_25 - intron 7220041-7220502 asmbl_34390 scaffold_25 - retained_intron 7220041-7220502 asmbl_34391 // Retained and Spliced Intron # retained_intron 7220043-7220502 (orient:-) max_ev_support = 1 # spliced_intron 7220043-7220502 (orient:-) max_ev_support = 3 scaffold_25 - intron 7220043-7220502 asmbl_34389 scaffold_25 - retained_intron 7220043-7220502 asmbl_34391 // Exon Skipping and Retention # skipped_exon 7803095-7803570 (orient:-) max_ev_support = 1 # retained_exon 7803319-7803458 (orient:-) max_ev_support = 2 scaffold_25 - retained_exons 7803319-7803458 asmbl_34406,asmbl_34408 scaffold_25 - intron_skips_exon 7803095-7803570 asmbl_34407 // Retained and Spliced Intron # retained_intron 7803694-7803782 (orient:-) max_ev_support = 1 # spliced_intron 7803694-7803782 (orient:-) max_ev_support = 2 scaffold_25 - intron 7803694-7803782 asmbl_34406 scaffold_25 - retained_intron 7803694-7803782 asmbl_34408 // Exon Skipping and Retention # skipped_exon 7832264-7832954 (orient:-) max_ev_support = 1 # retained_exon 7832383-7832580 (orient:-) max_ev_support = 1 scaffold_25 - retained_exons 7832383-7832580 asmbl_34410 scaffold_25 - intron_skips_exon 7832264-7832954 asmbl_34409 // Retained and Spliced Intron # retained_intron 7905410-7905469 (orient:-) max_ev_support = 1 # spliced_intron 7905410-7905469 (orient:-) max_ev_support = 1 scaffold_25 - intron 7905410-7905469 asmbl_34415 scaffold_25 - retained_intron 7905410-7905469 asmbl_34416 // Retained and Spliced Intron # retained_intron 7905436-7905495 (orient:-) max_ev_support = 1 # spliced_intron 7905436-7905495 (orient:-) max_ev_support = 1 scaffold_25 - intron 7905436-7905495 asmbl_34414 scaffold_25 - retained_intron 7905436-7905495 asmbl_34416 // Exon Skipping and Retention # skipped_exon 8270367-8270753 (orient:-) max_ev_support = 2 # retained_exon 8270512-8270617 (orient:-) max_ev_support = 3 scaffold_25 - retained_exons 8270512-8270617 asmbl_34427 scaffold_25 - intron_skips_exon 8270367-8270753 asmbl_34428 // Exon Skipping and Retention # skipped_exon 8697800-8700439 (orient:-) max_ev_support = 2 # retained_exon 8698556-8698659 (orient:-) max_ev_support = 2 scaffold_25 - retained_exons 8698556-8698659 asmbl_34463 scaffold_25 - intron_skips_exon 8697800-8700439 asmbl_34462 // Exon Skipping and Retention # skipped_exon 8697800-8700443 (orient:-) max_ev_support = 1 # retained_exon 8698556-8698659 (orient:-) max_ev_support = 2 scaffold_25 - retained_exons 8698556-8698659 asmbl_34463 scaffold_25 - intron_skips_exon 8697800-8700443 asmbl_34465 // Retained and Spliced Intron # retained_intron 9043482-9043880 (orient:-) max_ev_support = 3 # spliced_intron 9043482-9043880 (orient:-) max_ev_support = 3 scaffold_25 - intron 9043482-9043880 asmbl_34475,asmbl_34478 scaffold_25 - retained_intron 9043482-9043880 asmbl_34476,asmbl_34479 // Retained and Spliced Intron # retained_intron 9043176-9043406 (orient:-) max_ev_support = 2 # spliced_intron 9043176-9043406 (orient:-) max_ev_support = 3 scaffold_25 - intron 9043176-9043406 asmbl_34475,asmbl_34476,asmbl_34478 scaffold_25 - retained_intron 9043176-9043406 asmbl_34479 // Retained and Spliced Intron # retained_intron 9503273-9503414 (orient:-) max_ev_support = 2 # spliced_intron 9503273-9503414 (orient:-) max_ev_support = 2 scaffold_25 - intron 9503273-9503414 asmbl_34503,asmbl_34505 scaffold_25 - retained_intron 9503273-9503414 asmbl_34504 // Exon Skipping and Retention # skipped_exon 9939292-9940567 (orient:-) max_ev_support = 1 # retained_exon 9939830-9939881 (orient:-) max_ev_support = 1 scaffold_25 - retained_exons 9939830-9939881 asmbl_34530 scaffold_25 - intron_skips_exon 9939292-9940567 asmbl_34531 // Exon Skipping and Retention # skipped_exon 9939882-9942193 (orient:-) max_ev_support = 1 # retained_exon 9940568-9940619 (orient:-) max_ev_support = 1 scaffold_25 - retained_exons 9940568-9940619 asmbl_34531 scaffold_25 - intron_skips_exon 9939882-9942193 asmbl_34530 // Retained and Spliced Intron # retained_intron 902566-902678 (orient:+) max_ev_support = 2 # spliced_intron 902566-902678 (orient:+) max_ev_support = 2 scaffold_26 + intron 902566-902678 asmbl_34710 scaffold_26 + retained_intron 902566-902678 asmbl_34709 // Retained and Spliced Intron # retained_intron 902781-902905 (orient:+) max_ev_support = 2 # spliced_intron 902781-902905 (orient:+) max_ev_support = 2 scaffold_26 + intron 902781-902905 asmbl_34710 scaffold_26 + retained_intron 902781-902905 asmbl_34709 // Retained and Spliced Intron # retained_intron 903117-903347 (orient:+) max_ev_support = 3 # spliced_intron 903117-903347 (orient:+) max_ev_support = 2 scaffold_26 + intron 903117-903347 asmbl_34710 scaffold_26 + retained_intron 903117-903347 asmbl_34709 // Exon Skipping and Retention # skipped_exon 1994624-1995447 (orient:+) max_ev_support = 1 # retained_exon 1995175-1995221 (orient:+) max_ev_support = 1 scaffold_26 + retained_exons 1995175-1995221 asmbl_34727 scaffold_26 + intron_skips_exon 1994624-1995447 asmbl_34729 // Exon Skipping and Retention # skipped_exon 1994935-1997416 (orient:+) max_ev_support = 1 # retained_exon 1995175-1995532 (orient:+) max_ev_support = 1 scaffold_26 + retained_exons 1995175-1995221,1995448-1995532 asmbl_34727 scaffold_26 + intron_skips_exon 1994935-1997416 asmbl_34728 // Exon Skipping and Retention # skipped_exon 1994012-1995174 (orient:+) max_ev_support = 1 # retained_exon 1994577-1994934 (orient:+) max_ev_support = 1 scaffold_26 + retained_exons 1994577-1994623,1994850-1994934 asmbl_34728 scaffold_26 + intron_skips_exon 1994012-1995174 asmbl_34727 // Retained and Spliced Intron # retained_intron 2253736-2255266 (orient:+) max_ev_support = 1 # spliced_intron 2253736-2255266 (orient:+) max_ev_support = 2 scaffold_26 + intron 2253736-2255266 asmbl_34734,asmbl_34738 scaffold_26 + retained_intron 2253736-2255266 asmbl_34737 // Retained and Spliced Intron # retained_intron 2261353-2261420 (orient:+) max_ev_support = 1 # spliced_intron 2261353-2261420 (orient:+) max_ev_support = 1 scaffold_26 + intron 2261353-2261420 asmbl_34739 scaffold_26 + retained_intron 2261353-2261420 asmbl_34740 // Retained and Spliced Intron # retained_intron 2264373-2264869 (orient:+) max_ev_support = 2 # spliced_intron 2264373-2264869 (orient:+) max_ev_support = 2 scaffold_26 + intron 2264373-2264869 asmbl_34742 scaffold_26 + retained_intron 2264373-2264869 asmbl_34741 // Exon Skipping and Retention # skipped_exon 2781259-2782166 (orient:+) max_ev_support = 1 # retained_exon 2781939-2781953 (orient:+) max_ev_support = 1 scaffold_26 + retained_exons 2781939-2781953 asmbl_34754 scaffold_26 + intron_skips_exon 2781259-2782166 asmbl_34755 // Retained and Spliced Intron # retained_intron 3361212-3361377 (orient:+) max_ev_support = 1 # spliced_intron 3361212-3361377 (orient:+) max_ev_support = 2 scaffold_26 + intron 3361212-3361377 asmbl_34773 scaffold_26 + retained_intron 3361212-3361377 asmbl_34775 // Retained and Spliced Intron # retained_intron 3361453-3361585 (orient:+) max_ev_support = 1 # spliced_intron 3361453-3361585 (orient:+) max_ev_support = 2 scaffold_26 + intron 3361453-3361585 asmbl_34773 scaffold_26 + retained_intron 3361453-3361585 asmbl_34775 // Retained and Spliced Intron # retained_intron 3432400-3432532 (orient:+) max_ev_support = 1 # spliced_intron 3432400-3432532 (orient:+) max_ev_support = 2 scaffold_26 + intron 3432400-3432532 asmbl_34778,asmbl_34779 scaffold_26 + retained_intron 3432400-3432532 asmbl_34780 // Retained and Spliced Intron # retained_intron 3562965-3563144 (orient:+) max_ev_support = 2 # spliced_intron 3562965-3563144 (orient:+) max_ev_support = 1 scaffold_26 + intron 3562965-3563144 asmbl_34791 scaffold_26 + retained_intron 3562965-3563144 asmbl_34789,asmbl_34790 // Retained and Spliced Intron # retained_intron 3563037-3563144 (orient:+) max_ev_support = 2 # spliced_intron 3563037-3563144 (orient:+) max_ev_support = 1 scaffold_26 + intron 3563037-3563144 asmbl_34792,asmbl_34794 scaffold_26 + retained_intron 3563037-3563144 asmbl_34789,asmbl_34790 // Retained and Spliced Intron # retained_intron 3563207-3563305 (orient:+) max_ev_support = 2 # spliced_intron 3563207-3563305 (orient:+) max_ev_support = 2 scaffold_26 + intron 3563207-3563305 asmbl_34789,asmbl_34791,asmbl_34792,asmbl_34794 scaffold_26 + retained_intron 3563207-3563305 asmbl_34790 // Retained and Spliced Intron # retained_intron 3573675-3573769 (orient:+) max_ev_support = 1 # spliced_intron 3573675-3573769 (orient:+) max_ev_support = 2 scaffold_26 + intron 3573675-3573769 asmbl_34795 scaffold_26 + retained_intron 3573675-3573769 asmbl_34796 // Retained and Spliced Intron # retained_intron 3591176-3591371 (orient:+) max_ev_support = 1 # spliced_intron 3591176-3591371 (orient:+) max_ev_support = 1 scaffold_26 + intron 3591176-3591371 asmbl_34798 scaffold_26 + retained_intron 3591176-3591371 asmbl_34799 // Retained and Spliced Intron # retained_intron 3623024-3623045 (orient:+) max_ev_support = 1 # spliced_intron 3623024-3623045 (orient:+) max_ev_support = 1 scaffold_26 + intron 3623024-3623045 asmbl_34802 scaffold_26 + retained_intron 3623024-3623045 asmbl_34803 // Exon Skipping and Retention # skipped_exon 3672079-3673128 (orient:+) max_ev_support = 1 # retained_exon 3672349-3672378 (orient:+) max_ev_support = 2 scaffold_26 + retained_exons 3672349-3672378 asmbl_34808,asmbl_34809,asmbl_34811 scaffold_26 + intron_skips_exon 3672079-3673128 asmbl_34810,asmbl_34812 // Retained and Spliced Intron # retained_intron 3673200-3673300 (orient:+) max_ev_support = 1 # spliced_intron 3673200-3673300 (orient:+) max_ev_support = 2 scaffold_26 + intron 3673200-3673300 asmbl_34808,asmbl_34809,asmbl_34810,asmbl_34811 scaffold_26 + retained_intron 3673200-3673300 asmbl_34812 // Retained and Spliced Intron # retained_intron 3791532-3791799 (orient:+) max_ev_support = 1 # spliced_intron 3791532-3791799 (orient:+) max_ev_support = 1 scaffold_26 + intron 3791532-3791799 asmbl_34838 scaffold_26 + retained_intron 3791532-3791799 asmbl_34835,asmbl_34837 // Retained and Spliced Intron # retained_intron 3790895-3791028 (orient:+) max_ev_support = 1 # spliced_intron 3790895-3791028 (orient:+) max_ev_support = 1 scaffold_26 + intron 3790895-3791028 asmbl_34835,asmbl_34838 scaffold_26 + retained_intron 3790895-3791028 asmbl_34836,asmbl_34837 // Retained and Spliced Intron # retained_intron 3791186-3791394 (orient:+) max_ev_support = 1 # spliced_intron 3791186-3791394 (orient:+) max_ev_support = 1 scaffold_26 + intron 3791186-3791394 asmbl_34835,asmbl_34838 scaffold_26 + retained_intron 3791186-3791394 asmbl_34837 // Retained and Spliced Intron # retained_intron 3791282-3791394 (orient:+) max_ev_support = 1 # spliced_intron 3791282-3791394 (orient:+) max_ev_support = 1 scaffold_26 + intron 3791282-3791394 asmbl_34836 scaffold_26 + retained_intron 3791282-3791394 asmbl_34837 // Retained and Spliced Intron # retained_intron 4110627-4110718 (orient:+) max_ev_support = 1 # spliced_intron 4110627-4110718 (orient:+) max_ev_support = 2 scaffold_26 + intron 4110627-4110718 asmbl_34859 scaffold_26 + retained_intron 4110627-4110718 asmbl_34860,asmbl_34861 // Retained and Spliced Intron # retained_intron 4109409-4109599 (orient:+) max_ev_support = 1 # spliced_intron 4109409-4109599 (orient:+) max_ev_support = 2 scaffold_26 + intron 4109409-4109599 asmbl_34859,asmbl_34860 scaffold_26 + retained_intron 4109409-4109599 asmbl_34861 // Exon Skipping and Retention # skipped_exon 4142306-4142563 (orient:+) max_ev_support = 1 # retained_exon 4142374-4142407 (orient:+) max_ev_support = 1 scaffold_26 + retained_exons 4142374-4142407 asmbl_34871 scaffold_26 + intron_skips_exon 4142306-4142563 asmbl_34872 // Exon Skipping and Retention # skipped_exon 4141796-4142563 (orient:+) max_ev_support = 1 # retained_exon 4142374-4142407 (orient:+) max_ev_support = 1 scaffold_26 + retained_exons 4142374-4142407 asmbl_34871 scaffold_26 + intron_skips_exon 4141796-4142563 asmbl_34873 // Exon Skipping and Retention # skipped_exon 4141762-4142373 (orient:+) max_ev_support = 1 # retained_exon 4142272-4142305 (orient:+) max_ev_support = 1 scaffold_26 + retained_exons 4142272-4142305 asmbl_34872 scaffold_26 + intron_skips_exon 4141762-4142373 asmbl_34871 // Exon Skipping and Retention # skipped_exon 4141796-4142563 (orient:+) max_ev_support = 1 # retained_exon 4142272-4142305 (orient:+) max_ev_support = 1 scaffold_26 + retained_exons 4142272-4142305 asmbl_34872 scaffold_26 + intron_skips_exon 4141796-4142563 asmbl_34873 // Exon Skipping and Retention # skipped_exon 4141762-4142407 (orient:+) max_ev_support = 1 # retained_exon 4142272-4142305 (orient:+) max_ev_support = 1 scaffold_26 + retained_exons 4142272-4142305 asmbl_34872 scaffold_26 + intron_skips_exon 4141762-4142407 asmbl_34874 // Retained and Spliced Intron # retained_intron 4155586-4155680 (orient:+) max_ev_support = 1 # spliced_intron 4155586-4155680 (orient:+) max_ev_support = 2 scaffold_26 + intron 4155586-4155680 asmbl_34877 scaffold_26 + retained_intron 4155586-4155680 asmbl_34878 // Retained and Spliced Intron # retained_intron 4440010-4440139 (orient:+) max_ev_support = 2 # spliced_intron 4440010-4440139 (orient:+) max_ev_support = 1 scaffold_26 + intron 4440010-4440139 asmbl_34901 scaffold_26 + retained_intron 4440010-4440139 asmbl_34899,asmbl_34900 // Retained and Spliced Intron # retained_intron 4441929-4442021 (orient:+) max_ev_support = 3 # spliced_intron 4441929-4442021 (orient:+) max_ev_support = 2 scaffold_26 + intron 4441929-4442021 asmbl_34900,asmbl_34901 scaffold_26 + retained_intron 4441929-4442021 asmbl_34899 // Retained and Spliced Intron # retained_intron 5043870-5044023 (orient:+) max_ev_support = 2 # spliced_intron 5043870-5044023 (orient:+) max_ev_support = 2 scaffold_26 + intron 5043870-5044023 asmbl_34943,asmbl_34948,asmbl_34949,asmbl_34950,asmbl_34951,asmbl_34952,asmbl_34954,asmbl_34955,asmbl_34957 scaffold_26 + retained_intron 5043870-5044023 asmbl_34937 // Retained and Spliced Intron # retained_intron 5033716-5033863 (orient:+) max_ev_support = 2 # spliced_intron 5033716-5033863 (orient:+) max_ev_support = 2 scaffold_26 + intron 5033716-5033863 asmbl_34944,asmbl_34955 scaffold_26 + retained_intron 5033716-5033863 asmbl_34943,asmbl_34945,asmbl_34946,asmbl_34950,asmbl_34954,asmbl_34956,asmbl_34957 // Retained and Spliced Intron # retained_intron 5043449-5043773 (orient:+) max_ev_support = 2 # spliced_intron 5043449-5043773 (orient:+) max_ev_support = 2 scaffold_26 + intron 5043449-5043773 asmbl_34937,asmbl_34943,asmbl_34948,asmbl_34949,asmbl_34950,asmbl_34951,asmbl_34952,asmbl_34954,asmbl_34955,asmbl_34957 scaffold_26 + retained_intron 5043449-5043773 asmbl_34946 // Retained and Spliced Intron # retained_intron 5044652-5044757 (orient:+) max_ev_support = 1 # spliced_intron 5044652-5044757 (orient:+) max_ev_support = 2 scaffold_26 + intron 5044652-5044757 asmbl_34937,asmbl_34943,asmbl_34949,asmbl_34950,asmbl_34951,asmbl_34952,asmbl_34955,asmbl_34957 scaffold_26 + retained_intron 5044652-5044757 asmbl_34947,asmbl_34948,asmbl_34954 // Retained and Spliced Intron # retained_intron 5045239-5045524 (orient:+) max_ev_support = 1 # spliced_intron 5045239-5045524 (orient:+) max_ev_support = 2 scaffold_26 + intron 5045239-5045524 asmbl_34937,asmbl_34943,asmbl_34947,asmbl_34949,asmbl_34952,asmbl_34955,asmbl_34957 scaffold_26 + retained_intron 5045239-5045524 asmbl_34950,asmbl_34951 // Retained and Spliced Intron # retained_intron 5045661-5045778 (orient:+) max_ev_support = 1 # spliced_intron 5045661-5045778 (orient:+) max_ev_support = 2 scaffold_26 + intron 5045661-5045778 asmbl_34937,asmbl_34943,asmbl_34947,asmbl_34949,asmbl_34950,asmbl_34951,asmbl_34952,asmbl_34955 scaffold_26 + retained_intron 5045661-5045778 asmbl_34957 // Retained and Spliced Intron # retained_intron 5294667-5294755 (orient:+) max_ev_support = 1 # spliced_intron 5294667-5294755 (orient:+) max_ev_support = 3 scaffold_26 + intron 5294667-5294755 asmbl_34974 scaffold_26 + retained_intron 5294667-5294755 asmbl_34975 // Retained and Spliced Intron # retained_intron 5483268-5483396 (orient:+) max_ev_support = 2 # spliced_intron 5483268-5483396 (orient:+) max_ev_support = 1 scaffold_26 + intron 5483268-5483396 asmbl_34994,asmbl_34995,asmbl_34996,asmbl_34997,asmbl_34998 scaffold_26 + retained_intron 5483268-5483396 asmbl_34993 // Retained and Spliced Intron # retained_intron 5487654-5488597 (orient:+) max_ev_support = 9 # spliced_intron 5487654-5488597 (orient:+) max_ev_support = 3 scaffold_26 + intron 5487654-5488597 asmbl_35000,asmbl_35002 scaffold_26 + retained_intron 5487654-5488597 asmbl_34999 // Retained and Spliced Intron # retained_intron 5489603-5489761 (orient:+) max_ev_support = 2 # spliced_intron 5489603-5489761 (orient:+) max_ev_support = 1 scaffold_26 + intron 5489603-5489761 asmbl_35003 scaffold_26 + retained_intron 5489603-5489761 asmbl_35000 // Retained and Spliced Intron # retained_intron 5486047-5486534 (orient:+) max_ev_support = 2 # spliced_intron 5486047-5486534 (orient:+) max_ev_support = 3 scaffold_26 + intron 5486047-5486534 asmbl_35000 scaffold_26 + retained_intron 5486047-5486534 asmbl_35001 // Retained and Spliced Intron # retained_intron 5486047-5487189 (orient:+) max_ev_support = 3 # spliced_intron 5486047-5487189 (orient:+) max_ev_support = 3 scaffold_26 + intron 5486047-5487189 asmbl_34999,asmbl_35002 scaffold_26 + retained_intron 5486047-5487189 asmbl_35001 // Retained and Spliced Intron # retained_intron 5501908-5502171 (orient:+) max_ev_support = 2 # spliced_intron 5501908-5502171 (orient:+) max_ev_support = 2 scaffold_26 + intron 5501908-5502171 asmbl_35008 scaffold_26 + retained_intron 5501908-5502171 asmbl_35007 // Retained and Spliced Intron # retained_intron 5524354-5524425 (orient:+) max_ev_support = 1 # spliced_intron 5524354-5524425 (orient:+) max_ev_support = 1 scaffold_26 + intron 5524354-5524425 asmbl_35014 scaffold_26 + retained_intron 5524354-5524425 asmbl_35015 // Retained and Spliced Intron # retained_intron 5562155-5562324 (orient:+) max_ev_support = 1 # spliced_intron 5562155-5562324 (orient:+) max_ev_support = 1 scaffold_26 + intron 5562155-5562324 asmbl_35020 scaffold_26 + retained_intron 5562155-5562324 asmbl_35021 // Retained and Spliced Intron # retained_intron 5561589-5561755 (orient:+) max_ev_support = 2 # spliced_intron 5561589-5561755 (orient:+) max_ev_support = 2 scaffold_26 + intron 5561589-5561755 asmbl_35024 scaffold_26 + retained_intron 5561589-5561755 asmbl_35025,asmbl_35028 // Exon Skipping and Retention # skipped_exon 5744770-5745955 (orient:+) max_ev_support = 2 # retained_exon 5745760-5745849 (orient:+) max_ev_support = 1 scaffold_26 + retained_exons 5745760-5745849 asmbl_35031,asmbl_35034 scaffold_26 + intron_skips_exon 5744770-5745955 asmbl_35032,asmbl_35033,asmbl_35035 // Retained and Spliced Intron # retained_intron 5746449-5746583 (orient:+) max_ev_support = 2 # spliced_intron 5746449-5746583 (orient:+) max_ev_support = 1 scaffold_26 + intron 5746449-5746583 asmbl_35031,asmbl_35032,asmbl_35034,asmbl_35035 scaffold_26 + retained_intron 5746449-5746583 asmbl_35033 // Retained and Spliced Intron # retained_intron 5755074-5756532 (orient:+) max_ev_support = 2 # spliced_intron 5755074-5756532 (orient:+) max_ev_support = 1 scaffold_26 + intron 5755074-5756532 asmbl_35039 scaffold_26 + retained_intron 5755074-5756532 asmbl_35037,asmbl_35038 // Retained and Spliced Intron # retained_intron 5756917-5757157 (orient:+) max_ev_support = 1 # spliced_intron 5756917-5757157 (orient:+) max_ev_support = 1 scaffold_26 + intron 5756917-5757157 asmbl_35037,asmbl_35039 scaffold_26 + retained_intron 5756917-5757157 asmbl_35038 // Retained and Spliced Intron # retained_intron 5891547-5891797 (orient:+) max_ev_support = 1 # spliced_intron 5891547-5891797 (orient:+) max_ev_support = 2 scaffold_26 + intron 5891547-5891797 asmbl_35052 scaffold_26 + retained_intron 5891547-5891797 asmbl_35053,asmbl_35054 // Exon Skipping and Retention # skipped_exon 5983273-5983512 (orient:+) max_ev_support = 2 # retained_exon 5983388-5983402 (orient:+) max_ev_support = 1 scaffold_26 + retained_exons 5983388-5983402 asmbl_35064,asmbl_35065 scaffold_26 + intron_skips_exon 5983273-5983512 asmbl_35061,asmbl_35062 // Retained and Spliced Intron # retained_intron 6660908-6661271 (orient:+) max_ev_support = 3 # spliced_intron 6660908-6661271 (orient:+) max_ev_support = 2 scaffold_26 + intron 6660908-6661271 asmbl_35097,asmbl_35099 scaffold_26 + retained_intron 6660908-6661271 asmbl_35098 // Retained and Spliced Intron # retained_intron 6659499-6659582 (orient:+) max_ev_support = 1 # spliced_intron 6659499-6659582 (orient:+) max_ev_support = 2 scaffold_26 + intron 6659499-6659582 asmbl_35097,asmbl_35098 scaffold_26 + retained_intron 6659499-6659582 asmbl_35099 // Retained and Spliced Intron # retained_intron 6663635-6663720 (orient:+) max_ev_support = 3 # spliced_intron 6663635-6663720 (orient:+) max_ev_support = 2 scaffold_26 + intron 6663635-6663720 asmbl_35101,asmbl_35103 scaffold_26 + retained_intron 6663635-6663720 asmbl_35102 // Retained and Spliced Intron # retained_intron 6663772-6663872 (orient:+) max_ev_support = 3 # spliced_intron 6663772-6663872 (orient:+) max_ev_support = 2 scaffold_26 + intron 6663772-6663872 asmbl_35101,asmbl_35103 scaffold_26 + retained_intron 6663772-6663872 asmbl_35102 // Retained and Spliced Intron # retained_intron 6721964-6722044 (orient:+) max_ev_support = 2 # spliced_intron 6721964-6722044 (orient:+) max_ev_support = 2 scaffold_26 + intron 6721964-6722044 asmbl_35108 scaffold_26 + retained_intron 6721964-6722044 asmbl_35107 // Retained and Spliced Intron # retained_intron 6721964-6722078 (orient:+) max_ev_support = 2 # spliced_intron 6721964-6722078 (orient:+) max_ev_support = 1 scaffold_26 + intron 6721964-6722078 asmbl_35109 scaffold_26 + retained_intron 6721964-6722078 asmbl_35107 // Retained and Spliced Intron # retained_intron 7774100-7774213 (orient:+) max_ev_support = 2 # spliced_intron 7774100-7774213 (orient:+) max_ev_support = 1 scaffold_26 + intron 7774100-7774213 asmbl_35146 scaffold_26 + retained_intron 7774100-7774213 asmbl_35145 // Retained and Spliced Intron # retained_intron 7900294-7900429 (orient:+) max_ev_support = 2 # spliced_intron 7900294-7900429 (orient:+) max_ev_support = 3 scaffold_26 + intron 7900294-7900429 asmbl_35153 scaffold_26 + retained_intron 7900294-7900429 asmbl_35154,asmbl_35155 // Retained and Spliced Intron # retained_intron 7900944-7901028 (orient:+) max_ev_support = 1 # spliced_intron 7900944-7901028 (orient:+) max_ev_support = 3 scaffold_26 + intron 7900944-7901028 asmbl_35153,asmbl_35154 scaffold_26 + retained_intron 7900944-7901028 asmbl_35155 // Retained and Spliced Intron # retained_intron 7904645-7904751 (orient:+) max_ev_support = 1 # spliced_intron 7904645-7904751 (orient:+) max_ev_support = 1 scaffold_26 + intron 7904645-7904751 asmbl_35156 scaffold_26 + retained_intron 7904645-7904751 asmbl_35157 // Retained and Spliced Intron # retained_intron 8995725-8995801 (orient:+) max_ev_support = 1 # spliced_intron 8995725-8995801 (orient:+) max_ev_support = 2 scaffold_26 + intron 8995725-8995801 asmbl_35192 scaffold_26 + retained_intron 8995725-8995801 asmbl_35194 // Retained and Spliced Intron # retained_intron 9029889-9029987 (orient:+) max_ev_support = 2 # spliced_intron 9029889-9029987 (orient:+) max_ev_support = 2 scaffold_26 + intron 9029889-9029987 asmbl_35195 scaffold_26 + retained_intron 9029889-9029987 asmbl_35196 // Retained and Spliced Intron # retained_intron 9044430-9044639 (orient:+) max_ev_support = 2 # spliced_intron 9044430-9044639 (orient:+) max_ev_support = 3 scaffold_26 + intron 9044430-9044639 asmbl_35200,asmbl_35204 scaffold_26 + retained_intron 9044430-9044639 asmbl_35201 // Retained and Spliced Intron # retained_intron 9045289-9045366 (orient:+) max_ev_support = 2 # spliced_intron 9045289-9045366 (orient:+) max_ev_support = 3 scaffold_26 + intron 9045289-9045366 asmbl_35200,asmbl_35204 scaffold_26 + retained_intron 9045289-9045366 asmbl_35203 // Retained and Spliced Intron # retained_intron 9316596-9316754 (orient:+) max_ev_support = 1 # spliced_intron 9316596-9316754 (orient:+) max_ev_support = 2 scaffold_26 + intron 9316596-9316754 asmbl_35214,asmbl_35217,asmbl_35218,asmbl_35219,asmbl_35224 scaffold_26 + retained_intron 9316596-9316754 asmbl_35215,asmbl_35216,asmbl_35222 // Retained and Spliced Intron # retained_intron 9315862-9315995 (orient:+) max_ev_support = 2 # spliced_intron 9315862-9315995 (orient:+) max_ev_support = 2 scaffold_26 + intron 9315862-9315995 asmbl_35214,asmbl_35215,asmbl_35217,asmbl_35222,asmbl_35224 scaffold_26 + retained_intron 9315862-9315995 asmbl_35216,asmbl_35218,asmbl_35219,asmbl_35221 // Retained and Spliced Intron # retained_intron 9316247-9316445 (orient:+) max_ev_support = 1 # spliced_intron 9316247-9316445 (orient:+) max_ev_support = 2 scaffold_26 + intron 9316247-9316445 asmbl_35214,asmbl_35215,asmbl_35217,asmbl_35218,asmbl_35222,asmbl_35224 scaffold_26 + retained_intron 9316247-9316445 asmbl_35216,asmbl_35219 // Retained and Spliced Intron # retained_intron 9315311-9315414 (orient:+) max_ev_support = 1 # spliced_intron 9315311-9315414 (orient:+) max_ev_support = 2 scaffold_26 + intron 9315311-9315414 asmbl_35214,asmbl_35215,asmbl_35216,asmbl_35222,asmbl_35224 scaffold_26 + retained_intron 9315311-9315414 asmbl_35217 // Retained and Spliced Intron # retained_intron 9315672-9315826 (orient:+) max_ev_support = 2 # spliced_intron 9315672-9315826 (orient:+) max_ev_support = 2 scaffold_26 + intron 9315672-9315826 asmbl_35214,asmbl_35215,asmbl_35216,asmbl_35217,asmbl_35222,asmbl_35224 scaffold_26 + retained_intron 9315672-9315826 asmbl_35218,asmbl_35219,asmbl_35221 // Retained and Spliced Intron # retained_intron 9314784-9314931 (orient:+) max_ev_support = 1 # spliced_intron 9314784-9314931 (orient:+) max_ev_support = 2 scaffold_26 + intron 9314784-9314931 asmbl_35214,asmbl_35215,asmbl_35216,asmbl_35217,asmbl_35222,asmbl_35223,asmbl_35224 scaffold_26 + retained_intron 9314784-9314931 asmbl_35226 // Retained and Spliced Intron # retained_intron 9514352-9514514 (orient:+) max_ev_support = 1 # spliced_intron 9514352-9514514 (orient:+) max_ev_support = 1 scaffold_26 + intron 9514352-9514514 asmbl_35240 scaffold_26 + retained_intron 9514352-9514514 asmbl_35239 // Exon Skipping and Retention # skipped_exon 9607417-9610401 (orient:+) max_ev_support = 1 # retained_exon 9608494-9609701 (orient:+) max_ev_support = 3 scaffold_26 + retained_exons 9608494-9608597,9609222-9609346,9609504-9609701 asmbl_35244 scaffold_26 + intron_skips_exon 9607417-9610401 asmbl_35249 // Retained and Spliced Intron # retained_intron 9772322-9772792 (orient:+) max_ev_support = 2 # spliced_intron 9772322-9772792 (orient:+) max_ev_support = 2 scaffold_26 + intron 9772322-9772792 asmbl_35259,asmbl_35263,asmbl_35266 scaffold_26 + retained_intron 9772322-9772792 asmbl_35256,asmbl_35258,asmbl_35262,asmbl_35265 // Retained and Spliced Intron # retained_intron 9772322-9772904 (orient:+) max_ev_support = 2 # spliced_intron 9772322-9772904 (orient:+) max_ev_support = 2 scaffold_26 + intron 9772322-9772904 asmbl_35260,asmbl_35261,asmbl_35264,asmbl_35267 scaffold_26 + retained_intron 9772322-9772904 asmbl_35256,asmbl_35258,asmbl_35262,asmbl_35265 // Retained and Spliced Intron # retained_intron 9772970-9773112 (orient:+) max_ev_support = 2 # spliced_intron 9772970-9773112 (orient:+) max_ev_support = 2 scaffold_26 + intron 9772970-9773112 asmbl_35257,asmbl_35258,asmbl_35260,asmbl_35264 scaffold_26 + retained_intron 9772970-9773112 asmbl_35256,asmbl_35259,asmbl_35261,asmbl_35262,asmbl_35263,asmbl_35265,asmbl_35266,asmbl_35267 // Retained and Spliced Intron # retained_intron 9773180-9773315 (orient:+) max_ev_support = 2 # spliced_intron 9773180-9773315 (orient:+) max_ev_support = 2 scaffold_26 + intron 9773180-9773315 asmbl_35257,asmbl_35260,asmbl_35261,asmbl_35262,asmbl_35263,asmbl_35264,asmbl_35265,asmbl_35266,asmbl_35267 scaffold_26 + retained_intron 9773180-9773315 asmbl_35256,asmbl_35258,asmbl_35259 // Retained and Spliced Intron # retained_intron 9773422-9774174 (orient:+) max_ev_support = 3 # spliced_intron 9773422-9774174 (orient:+) max_ev_support = 1 scaffold_26 + intron 9773422-9774174 asmbl_35264,asmbl_35265 scaffold_26 + retained_intron 9773422-9774174 asmbl_35256,asmbl_35257,asmbl_35258,asmbl_35259,asmbl_35260,asmbl_35261 // Retained and Spliced Intron # retained_intron 9773422-9774402 (orient:+) max_ev_support = 3 # spliced_intron 9773422-9774402 (orient:+) max_ev_support = 2 scaffold_26 + intron 9773422-9774402 asmbl_35262,asmbl_35263,asmbl_35266,asmbl_35267 scaffold_26 + retained_intron 9773422-9774402 asmbl_35256,asmbl_35257,asmbl_35258,asmbl_35259,asmbl_35260,asmbl_35261 // Retained and Spliced Intron # retained_intron 9774294-9774402 (orient:+) max_ev_support = 3 # spliced_intron 9774294-9774402 (orient:+) max_ev_support = 1 scaffold_26 + intron 9774294-9774402 asmbl_35264 scaffold_26 + retained_intron 9774294-9774402 asmbl_35256,asmbl_35257,asmbl_35258,asmbl_35259,asmbl_35260,asmbl_35261,asmbl_35265 // Retained and Spliced Intron # retained_intron 9774454-9775593 (orient:+) max_ev_support = 3 # spliced_intron 9774454-9775593 (orient:+) max_ev_support = 1 scaffold_26 + intron 9774454-9775593 asmbl_35264,asmbl_35266,asmbl_35267 scaffold_26 + retained_intron 9774454-9775593 asmbl_35256,asmbl_35257,asmbl_35258,asmbl_35259,asmbl_35260,asmbl_35261,asmbl_35262,asmbl_35263,asmbl_35265 // Exon Skipping and Retention # skipped_exon 9773422-9774402 (orient:+) max_ev_support = 2 # retained_exon 9774175-9774293 (orient:+) max_ev_support = 1 scaffold_26 + retained_exons 9774175-9774293 asmbl_35264 scaffold_26 + intron_skips_exon 9773422-9774402 asmbl_35262,asmbl_35263,asmbl_35266,asmbl_35267 // Retained and Spliced Intron # retained_intron 9781574-9781736 (orient:+) max_ev_support = 2 # spliced_intron 9781574-9781736 (orient:+) max_ev_support = 3 scaffold_26 + intron 9781574-9781736 asmbl_35268 scaffold_26 + retained_intron 9781574-9781736 asmbl_35269 // Retained and Spliced Intron # retained_intron 9781848-9782129 (orient:+) max_ev_support = 2 # spliced_intron 9781848-9782129 (orient:+) max_ev_support = 3 scaffold_26 + intron 9781848-9782129 asmbl_35268 scaffold_26 + retained_intron 9781848-9782129 asmbl_35269 // Exon Skipping and Retention # skipped_exon 9829475-9830981 (orient:+) max_ev_support = 1 # retained_exon 9829802-9829918 (orient:+) max_ev_support = 2 scaffold_26 + retained_exons 9829802-9829918 asmbl_35274 scaffold_26 + intron_skips_exon 9829475-9830981 asmbl_35275 // Exon Skipping and Retention # skipped_exon 9843220-9843548 (orient:+) max_ev_support = 1 # retained_exon 9843315-9843402 (orient:+) max_ev_support = 2 scaffold_26 + retained_exons 9843315-9843402 asmbl_35278,asmbl_35283,asmbl_35284,asmbl_35285,asmbl_35288,asmbl_35290 scaffold_26 + intron_skips_exon 9843220-9843548 asmbl_35282,asmbl_35286,asmbl_35287 // Retained and Spliced Intron # retained_intron 9844185-9844437 (orient:+) max_ev_support = 2 # spliced_intron 9844185-9844437 (orient:+) max_ev_support = 1 scaffold_26 + intron 9844185-9844437 asmbl_35285,asmbl_35289 scaffold_26 + retained_intron 9844185-9844437 asmbl_35278,asmbl_35279,asmbl_35282,asmbl_35283,asmbl_35284,asmbl_35286,asmbl_35287,asmbl_35288,asmbl_35290 // Retained and Spliced Intron # retained_intron 9853517-9853606 (orient:+) max_ev_support = 2 # spliced_intron 9853517-9853606 (orient:+) max_ev_support = 1 scaffold_26 + intron 9853517-9853606 asmbl_35282,asmbl_35283,asmbl_35284,asmbl_35286 scaffold_26 + retained_intron 9853517-9853606 asmbl_35278,asmbl_35279,asmbl_35285,asmbl_35287,asmbl_35288,asmbl_35289,asmbl_35290 // Retained and Spliced Intron # retained_intron 1322177-1322196 (orient:-) max_ev_support = 1 # spliced_intron 1322177-1322196 (orient:-) max_ev_support = 1 scaffold_26 - intron 1322177-1322196 asmbl_35398 scaffold_26 - retained_intron 1322177-1322196 asmbl_35402 // Retained and Spliced Intron # retained_intron 2809035-2809204 (orient:-) max_ev_support = 1 # spliced_intron 2809035-2809204 (orient:-) max_ev_support = 1 scaffold_26 - intron 2809035-2809204 asmbl_35446 scaffold_26 - retained_intron 2809035-2809204 asmbl_35447 // Exon Skipping and Retention # skipped_exon 2960900-2963885 (orient:-) max_ev_support = 1 # retained_exon 2962932-2962975 (orient:-) max_ev_support = 2 scaffold_26 - retained_exons 2962932-2962975 asmbl_35458,asmbl_35459,asmbl_35460 scaffold_26 - intron_skips_exon 2960900-2963885 asmbl_35462,asmbl_35463 // Exon Skipping and Retention # skipped_exon 3178424-3179728 (orient:-) max_ev_support = 2 # retained_exon 3179305-3179382 (orient:-) max_ev_support = 2 scaffold_26 - retained_exons 3179305-3179382 asmbl_35473 scaffold_26 - intron_skips_exon 3178424-3179728 asmbl_35472 // Exon Skipping and Retention # skipped_exon 3343557-3345562 (orient:-) max_ev_support = 1 # retained_exon 3343796-3343936 (orient:-) max_ev_support = 1 scaffold_26 - retained_exons 3343796-3343936 asmbl_35482,asmbl_35483,asmbl_35485 scaffold_26 - intron_skips_exon 3343557-3345562 asmbl_35484 // Retained and Spliced Intron # retained_intron 3651416-3651580 (orient:-) max_ev_support = 2 # spliced_intron 3651416-3651580 (orient:-) max_ev_support = 2 scaffold_26 - intron 3651416-3651580 asmbl_35498 scaffold_26 - retained_intron 3651416-3651580 asmbl_35499 // Retained and Spliced Intron # retained_intron 3811137-3811207 (orient:-) max_ev_support = 2 # spliced_intron 3811137-3811207 (orient:-) max_ev_support = 2 scaffold_26 - intron 3811137-3811207 asmbl_35506 scaffold_26 - retained_intron 3811137-3811207 asmbl_35507 // Exon Skipping and Retention # skipped_exon 3941793-3943946 (orient:-) max_ev_support = 1 # retained_exon 3941905-3941985 (orient:-) max_ev_support = 2 scaffold_26 - retained_exons 3941905-3941985 asmbl_35512 scaffold_26 - intron_skips_exon 3941793-3943946 asmbl_35515 // Retained and Spliced Intron # retained_intron 4135749-4135855 (orient:-) max_ev_support = 1 # spliced_intron 4135749-4135855 (orient:-) max_ev_support = 2 scaffold_26 - intron 4135749-4135855 asmbl_35530,asmbl_35531,asmbl_35533,asmbl_35534 scaffold_26 - retained_intron 4135749-4135855 asmbl_35532 // Retained and Spliced Intron # retained_intron 4136117-4136364 (orient:-) max_ev_support = 2 # spliced_intron 4136117-4136364 (orient:-) max_ev_support = 2 scaffold_26 - intron 4136117-4136364 asmbl_35530,asmbl_35531,asmbl_35533 scaffold_26 - retained_intron 4136117-4136364 asmbl_35532,asmbl_35534 // Exon Skipping and Retention # skipped_exon 4331957-4333629 (orient:-) max_ev_support = 1 # retained_exon 4332659-4333373 (orient:-) max_ev_support = 1 scaffold_26 - retained_exons 4332659-4332682,4333329-4333373 asmbl_35542 scaffold_26 - intron_skips_exon 4331957-4333629 asmbl_35543,asmbl_35544 // Exon Skipping and Retention # skipped_exon 4332683-4333629 (orient:-) max_ev_support = 1 # retained_exon 4333329-4333373 (orient:-) max_ev_support = 1 scaffold_26 - retained_exons 4333329-4333373 asmbl_35542 scaffold_26 - intron_skips_exon 4332683-4333629 asmbl_35546 // Retained and Spliced Intron # retained_intron 4593627-4593805 (orient:-) max_ev_support = 2 # spliced_intron 4593627-4593805 (orient:-) max_ev_support = 1 scaffold_26 - intron 4593627-4593805 asmbl_35567 scaffold_26 - retained_intron 4593627-4593805 asmbl_35569,asmbl_35572 // Retained and Spliced Intron # retained_intron 4678864-4679059 (orient:-) max_ev_support = 1 # spliced_intron 4678864-4679059 (orient:-) max_ev_support = 1 scaffold_26 - intron 4678864-4679059 asmbl_35584 scaffold_26 - retained_intron 4678864-4679059 asmbl_35583 // Retained and Spliced Intron # retained_intron 4679112-4679225 (orient:-) max_ev_support = 1 # spliced_intron 4679112-4679225 (orient:-) max_ev_support = 1 scaffold_26 - intron 4679112-4679225 asmbl_35583 scaffold_26 - retained_intron 4679112-4679225 asmbl_35584 // Retained and Spliced Intron # retained_intron 4690170-4690297 (orient:-) max_ev_support = 1 # spliced_intron 4690170-4690297 (orient:-) max_ev_support = 2 scaffold_26 - intron 4690170-4690297 asmbl_35585,asmbl_35586,asmbl_35587,asmbl_35588 scaffold_26 - retained_intron 4690170-4690297 asmbl_35589 // Retained and Spliced Intron # retained_intron 4925304-4925435 (orient:-) max_ev_support = 3 # spliced_intron 4925304-4925435 (orient:-) max_ev_support = 1 scaffold_26 - intron 4925304-4925435 asmbl_35600 scaffold_26 - retained_intron 4925304-4925435 asmbl_35599 // Retained and Spliced Intron # retained_intron 5646059-5646185 (orient:-) max_ev_support = 3 # spliced_intron 5646059-5646185 (orient:-) max_ev_support = 1 scaffold_26 - intron 5646059-5646185 asmbl_35617 scaffold_26 - retained_intron 5646059-5646185 asmbl_35608,asmbl_35609,asmbl_35610 // Exon Skipping and Retention # skipped_exon 5647284-5649356 (orient:-) max_ev_support = 2 # retained_exon 5648478-5648504 (orient:-) max_ev_support = 2 scaffold_26 - retained_exons 5648478-5648504 asmbl_35608,asmbl_35610,asmbl_35611,asmbl_35612,asmbl_35613,asmbl_35614 scaffold_26 - intron_skips_exon 5647284-5649356 asmbl_35609 // Exon Skipping and Retention # skipped_exon 5648505-5649556 (orient:-) max_ev_support = 1 # retained_exon 5649357-5649445 (orient:-) max_ev_support = 4 scaffold_26 - retained_exons 5649357-5649445 asmbl_35608,asmbl_35609,asmbl_35611,asmbl_35612,asmbl_35613,asmbl_35614 scaffold_26 - intron_skips_exon 5648505-5649556 asmbl_35610 // Exon Skipping and Retention # skipped_exon 5657869-5660156 (orient:-) max_ev_support = 1 # retained_exon 5658452-5658472 (orient:-) max_ev_support = 3 scaffold_26 - retained_exons 5658452-5658472 asmbl_35608,asmbl_35610,asmbl_35612 scaffold_26 - intron_skips_exon 5657869-5660156 asmbl_35609,asmbl_35611,asmbl_35613,asmbl_35614 // Retained and Spliced Intron # retained_intron 5795098-5795276 (orient:-) max_ev_support = 1 # spliced_intron 5795098-5795276 (orient:-) max_ev_support = 1 scaffold_26 - intron 5795098-5795276 asmbl_35626 scaffold_26 - retained_intron 5795098-5795276 asmbl_35625,asmbl_35627 // Retained and Spliced Intron # retained_intron 5874040-5874142 (orient:-) max_ev_support = 1 # spliced_intron 5874040-5874142 (orient:-) max_ev_support = 3 scaffold_26 - intron 5874040-5874142 asmbl_35632 scaffold_26 - retained_intron 5874040-5874142 asmbl_35633 // Retained and Spliced Intron # retained_intron 5874800-5875093 (orient:-) max_ev_support = 3 # spliced_intron 5874800-5875093 (orient:-) max_ev_support = 3 scaffold_26 - intron 5874800-5875093 asmbl_35632 scaffold_26 - retained_intron 5874800-5875093 asmbl_35633 // Exon Skipping and Retention # skipped_exon 5894384-5894720 (orient:-) max_ev_support = 1 # retained_exon 5894474-5894601 (orient:-) max_ev_support = 2 scaffold_26 - retained_exons 5894474-5894601 asmbl_35638,asmbl_35639,asmbl_35644 scaffold_26 - intron_skips_exon 5894384-5894720 asmbl_35643 // Retained and Spliced Intron # retained_intron 5895307-5895541 (orient:-) max_ev_support = 2 # spliced_intron 5895307-5895541 (orient:-) max_ev_support = 2 scaffold_26 - intron 5895307-5895541 asmbl_35639,asmbl_35643,asmbl_35644 scaffold_26 - retained_intron 5895307-5895541 asmbl_35638 // Retained and Spliced Intron # retained_intron 5894602-5894720 (orient:-) max_ev_support = 2 # spliced_intron 5894602-5894720 (orient:-) max_ev_support = 2 scaffold_26 - intron 5894602-5894720 asmbl_35638,asmbl_35639,asmbl_35644 scaffold_26 - retained_intron 5894602-5894720 asmbl_35640 // Retained and Spliced Intron # retained_intron 5945002-5945154 (orient:-) max_ev_support = 3 # spliced_intron 5945002-5945154 (orient:-) max_ev_support = 3 scaffold_26 - intron 5945002-5945154 asmbl_35652 scaffold_26 - retained_intron 5945002-5945154 asmbl_35651 // Retained and Spliced Intron # retained_intron 5945016-5945154 (orient:-) max_ev_support = 3 # spliced_intron 5945016-5945154 (orient:-) max_ev_support = 1 scaffold_26 - intron 5945016-5945154 asmbl_35653 scaffold_26 - retained_intron 5945016-5945154 asmbl_35651 // Retained and Spliced Intron # retained_intron 5953595-5953639 (orient:-) max_ev_support = 3 # spliced_intron 5953595-5953639 (orient:-) max_ev_support = 1 scaffold_26 - intron 5953595-5953639 asmbl_35656 scaffold_26 - retained_intron 5953595-5953639 asmbl_35654,asmbl_35655 // Retained and Spliced Intron # retained_intron 5954384-5954477 (orient:-) max_ev_support = 1 # spliced_intron 5954384-5954477 (orient:-) max_ev_support = 2 scaffold_26 - intron 5954384-5954477 asmbl_35654,asmbl_35656 scaffold_26 - retained_intron 5954384-5954477 asmbl_35655 // Retained and Spliced Intron # retained_intron 6320095-6320279 (orient:-) max_ev_support = 2 # spliced_intron 6320095-6320279 (orient:-) max_ev_support = 2 scaffold_26 - intron 6320095-6320279 asmbl_35671 scaffold_26 - retained_intron 6320095-6320279 asmbl_35672,asmbl_35673 // Exon Skipping and Retention # skipped_exon 6350865-6351295 (orient:-) max_ev_support = 1 # retained_exon 6351172-6351208 (orient:-) max_ev_support = 2 scaffold_26 - retained_exons 6351172-6351208 asmbl_35680,asmbl_35685 scaffold_26 - intron_skips_exon 6350865-6351295 asmbl_35682 // Retained and Spliced Intron # retained_intron 6350817-6351171 (orient:-) max_ev_support = 2 # spliced_intron 6350817-6351171 (orient:-) max_ev_support = 1 scaffold_26 - intron 6350817-6351171 asmbl_35685 scaffold_26 - retained_intron 6350817-6351171 asmbl_35681 // Retained and Spliced Intron # retained_intron 6350832-6351171 (orient:-) max_ev_support = 2 # spliced_intron 6350832-6351171 (orient:-) max_ev_support = 2 scaffold_26 - intron 6350832-6351171 asmbl_35680,asmbl_35684 scaffold_26 - retained_intron 6350832-6351171 asmbl_35681 // Retained and Spliced Intron # retained_intron 6350865-6351156 (orient:-) max_ev_support = 2 # spliced_intron 6350865-6351156 (orient:-) max_ev_support = 1 scaffold_26 - intron 6350865-6351156 asmbl_35683 scaffold_26 - retained_intron 6350865-6351156 asmbl_35681 // Retained and Spliced Intron # retained_intron 6350865-6351295 (orient:-) max_ev_support = 2 # spliced_intron 6350865-6351295 (orient:-) max_ev_support = 1 scaffold_26 - intron 6350865-6351295 asmbl_35682 scaffold_26 - retained_intron 6350865-6351295 asmbl_35681 // Retained and Spliced Intron # retained_intron 6351209-6351295 (orient:-) max_ev_support = 1 # spliced_intron 6351209-6351295 (orient:-) max_ev_support = 2 scaffold_26 - intron 6351209-6351295 asmbl_35680,asmbl_35683,asmbl_35685 scaffold_26 - retained_intron 6351209-6351295 asmbl_35681,asmbl_35684 // Exon Skipping and Retention # skipped_exon 6703883-6704797 (orient:-) max_ev_support = 1 # retained_exon 6704291-6704368 (orient:-) max_ev_support = 2 scaffold_26 - retained_exons 6704291-6704368 asmbl_35696,asmbl_35698,asmbl_35700 scaffold_26 - intron_skips_exon 6703883-6704797 asmbl_35701 // Retained and Spliced Intron # retained_intron 6703606-6703786 (orient:-) max_ev_support = 1 # spliced_intron 6703606-6703786 (orient:-) max_ev_support = 2 scaffold_26 - intron 6703606-6703786 asmbl_35696,asmbl_35698,asmbl_35700,asmbl_35701 scaffold_26 - retained_intron 6703606-6703786 asmbl_35697,asmbl_35699 // Retained and Spliced Intron # retained_intron 9082921-9083032 (orient:-) max_ev_support = 3 # spliced_intron 9082921-9083032 (orient:-) max_ev_support = 2 scaffold_26 - intron 9082921-9083032 asmbl_35764,asmbl_35765,asmbl_35766,asmbl_35767 scaffold_26 - retained_intron 9082921-9083032 asmbl_35763 // Retained and Spliced Intron # retained_intron 9083212-9083394 (orient:-) max_ev_support = 1 # spliced_intron 9083212-9083394 (orient:-) max_ev_support = 2 scaffold_26 - intron 9083212-9083394 asmbl_35764,asmbl_35765,asmbl_35767 scaffold_26 - retained_intron 9083212-9083394 asmbl_35763,asmbl_35766 // Retained and Spliced Intron # retained_intron 9083573-9083738 (orient:-) max_ev_support = 2 # spliced_intron 9083573-9083738 (orient:-) max_ev_support = 1 scaffold_26 - intron 9083573-9083738 asmbl_35767 scaffold_26 - retained_intron 9083573-9083738 asmbl_35765 // Retained and Spliced Intron # retained_intron 9083581-9083738 (orient:-) max_ev_support = 2 # spliced_intron 9083581-9083738 (orient:-) max_ev_support = 2 scaffold_26 - intron 9083581-9083738 asmbl_35763,asmbl_35764 scaffold_26 - retained_intron 9083581-9083738 asmbl_35765 // Retained and Spliced Intron # retained_intron 9420301-9420411 (orient:-) max_ev_support = 2 # spliced_intron 9420301-9420411 (orient:-) max_ev_support = 1 scaffold_26 - intron 9420301-9420411 asmbl_35777 scaffold_26 - retained_intron 9420301-9420411 asmbl_35778 // Retained and Spliced Intron # retained_intron 9426206-9426291 (orient:-) max_ev_support = 1 # spliced_intron 9426206-9426291 (orient:-) max_ev_support = 1 scaffold_26 - intron 9426206-9426291 asmbl_35780 scaffold_26 - retained_intron 9426206-9426291 asmbl_35779 // Exon Skipping and Retention # skipped_exon 9841126-9842483 (orient:-) max_ev_support = 1 # retained_exon 9841947-9842107 (orient:-) max_ev_support = 3 scaffold_26 - retained_exons 9841947-9842107 asmbl_35793 scaffold_26 - intron_skips_exon 9841126-9842483 asmbl_35797 // Exon Skipping and Retention # skipped_exon 9840009-9841946 (orient:-) max_ev_support = 3 # retained_exon 9840738-9841125 (orient:-) max_ev_support = 1 scaffold_26 - retained_exons 9840738-9841125 asmbl_35797 scaffold_26 - intron_skips_exon 9840009-9841946 asmbl_35793 // Retained and Spliced Intron # retained_intron 9943076-9943771 (orient:-) max_ev_support = 5 # spliced_intron 9943076-9943771 (orient:-) max_ev_support = 1 scaffold_26 - intron 9943076-9943771 asmbl_35805 scaffold_26 - retained_intron 9943076-9943771 asmbl_35803,asmbl_35804 // Retained and Spliced Intron # retained_intron 10097149-10097583 (orient:-) max_ev_support = 2 # spliced_intron 10097149-10097583 (orient:-) max_ev_support = 1 scaffold_26 - intron 10097149-10097583 asmbl_35811 scaffold_26 - retained_intron 10097149-10097583 asmbl_35808,asmbl_35812 // Retained and Spliced Intron # retained_intron 10097149-10097600 (orient:-) max_ev_support = 2 # spliced_intron 10097149-10097600 (orient:-) max_ev_support = 2 scaffold_26 - intron 10097149-10097600 asmbl_35807 scaffold_26 - retained_intron 10097149-10097600 asmbl_35808,asmbl_35812 // Exon Skipping and Retention # skipped_exon 10120348-10122046 (orient:-) max_ev_support = 2 # retained_exon 10121517-10121910 (orient:-) max_ev_support = 3 scaffold_26 - retained_exons 10121517-10121616,10121765-10121910 asmbl_35814 scaffold_26 - retained_exons 10121517-10121649,10121765-10121910 asmbl_35816,asmbl_35820,asmbl_35821 scaffold_26 - intron_skips_exon 10120348-10122046 asmbl_35817 // Retained and Spliced Intron # retained_intron 10119226-10119413 (orient:-) max_ev_support = 1 # spliced_intron 10119226-10119413 (orient:-) max_ev_support = 3 scaffold_26 - intron 10119226-10119413 asmbl_35814,asmbl_35816,asmbl_35817,asmbl_35818,asmbl_35821 scaffold_26 - retained_intron 10119226-10119413 asmbl_35822 // Retained and Spliced Intron # retained_intron 294852-294971 (orient:+) max_ev_support = 3 # spliced_intron 294852-294971 (orient:+) max_ev_support = 3 scaffold_27 + intron 294852-294971 asmbl_35943 scaffold_27 + retained_intron 294852-294971 asmbl_35942 // Exon Skipping and Retention # skipped_exon 616486-616959 (orient:+) max_ev_support = 1 # retained_exon 616619-616723 (orient:+) max_ev_support = 2 scaffold_27 + retained_exons 616619-616723 asmbl_35959 scaffold_27 + intron_skips_exon 616486-616959 asmbl_35960 // Exon Skipping and Retention # skipped_exon 973032-975196 (orient:+) max_ev_support = 2 # retained_exon 974848-975044 (orient:+) max_ev_support = 1 scaffold_27 + retained_exons 974848-975044 asmbl_35967 scaffold_27 + intron_skips_exon 973032-975196 asmbl_35973 // Exon Skipping and Retention # skipped_exon 973032-974847 (orient:+) max_ev_support = 1 # retained_exon 973582-973720 (orient:+) max_ev_support = 2 scaffold_27 + retained_exons 973582-973720 asmbl_35968,asmbl_35974,asmbl_35975 scaffold_27 + intron_skips_exon 973032-974847 asmbl_35967 // Retained and Spliced Intron # retained_intron 975659-975913 (orient:+) max_ev_support = 1 # spliced_intron 975659-975913 (orient:+) max_ev_support = 2 scaffold_27 + intron 975659-975913 asmbl_35967,asmbl_35968,asmbl_35970,asmbl_35971,asmbl_35973,asmbl_35975 scaffold_27 + retained_intron 975659-975913 asmbl_35976 // Retained and Spliced Intron # retained_intron 1419227-1419252 (orient:+) max_ev_support = 1 # spliced_intron 1419227-1419252 (orient:+) max_ev_support = 1 scaffold_27 + intron 1419227-1419252 asmbl_36003,asmbl_36005 scaffold_27 + retained_intron 1419227-1419252 asmbl_36002,asmbl_36004 // Retained and Spliced Intron # retained_intron 1551570-1551779 (orient:+) max_ev_support = 1 # spliced_intron 1551570-1551779 (orient:+) max_ev_support = 3 scaffold_27 + intron 1551570-1551779 asmbl_36020,asmbl_36023,asmbl_36025 scaffold_27 + retained_intron 1551570-1551779 asmbl_36026 // Exon Skipping and Retention # skipped_exon 1774172-1774783 (orient:+) max_ev_support = 1 # retained_exon 1774274-1774539 (orient:+) max_ev_support = 2 scaffold_27 + retained_exons 1774274-1774355,1774456-1774539 asmbl_36037,asmbl_36039 scaffold_27 + intron_skips_exon 1774172-1774783 asmbl_36038 // Exon Skipping and Retention # skipped_exon 1774540-1775914 (orient:+) max_ev_support = 1 # retained_exon 1774784-1775049 (orient:+) max_ev_support = 1 scaffold_27 + retained_exons 1774784-1774865,1774966-1775049 asmbl_36038 scaffold_27 + intron_skips_exon 1774540-1775914 asmbl_36037,asmbl_36039 // Exon Skipping and Retention # skipped_exon 1986699-1987064 (orient:+) max_ev_support = 1 # retained_exon 1986906-1986978 (orient:+) max_ev_support = 1 scaffold_27 + retained_exons 1986906-1986978 asmbl_36059,asmbl_36061 scaffold_27 + intron_skips_exon 1986699-1987064 asmbl_36058 // Retained and Spliced Intron # retained_intron 2047111-2047352 (orient:+) max_ev_support = 1 # spliced_intron 2047111-2047352 (orient:+) max_ev_support = 2 scaffold_27 + intron 2047111-2047352 asmbl_36062 scaffold_27 + retained_intron 2047111-2047352 asmbl_36063 // Retained and Spliced Intron # retained_intron 2049473-2049594 (orient:+) max_ev_support = 1 # spliced_intron 2049473-2049594 (orient:+) max_ev_support = 2 scaffold_27 + intron 2049473-2049594 asmbl_36062,asmbl_36063 scaffold_27 + retained_intron 2049473-2049594 asmbl_36064 // Retained and Spliced Intron # retained_intron 2436344-2436368 (orient:+) max_ev_support = 1 # spliced_intron 2436344-2436368 (orient:+) max_ev_support = 1 scaffold_27 + intron 2436344-2436368 asmbl_36085 scaffold_27 + retained_intron 2436344-2436368 asmbl_36086 // Retained and Spliced Intron # retained_intron 2436344-2436418 (orient:+) max_ev_support = 1 # spliced_intron 2436344-2436418 (orient:+) max_ev_support = 1 scaffold_27 + intron 2436344-2436418 asmbl_36084 scaffold_27 + retained_intron 2436344-2436418 asmbl_36086 // Retained and Spliced Intron # retained_intron 2536912-2537126 (orient:+) max_ev_support = 1 # spliced_intron 2536912-2537126 (orient:+) max_ev_support = 2 scaffold_27 + intron 2536912-2537126 asmbl_36087 scaffold_27 + retained_intron 2536912-2537126 asmbl_36088 // Retained and Spliced Intron # retained_intron 2548208-2548242 (orient:+) max_ev_support = 2 # spliced_intron 2548208-2548242 (orient:+) max_ev_support = 1 scaffold_27 + intron 2548208-2548242 asmbl_36094 scaffold_27 + retained_intron 2548208-2548242 asmbl_36092,asmbl_36093 // Exon Skipping and Retention # skipped_exon 2641245-2642085 (orient:+) max_ev_support = 2 # retained_exon 2641397-2641510 (orient:+) max_ev_support = 2 scaffold_27 + retained_exons 2641397-2641510 asmbl_36099 scaffold_27 + intron_skips_exon 2641245-2642085 asmbl_36100 // Retained and Spliced Intron # retained_intron 2786649-2786780 (orient:+) max_ev_support = 2 # spliced_intron 2786649-2786780 (orient:+) max_ev_support = 2 scaffold_27 + intron 2786649-2786780 asmbl_36106,asmbl_36107,asmbl_36108 scaffold_27 + retained_intron 2786649-2786780 asmbl_36110 // Retained and Spliced Intron # retained_intron 2792841-2792968 (orient:+) max_ev_support = 1 # spliced_intron 2792841-2792968 (orient:+) max_ev_support = 1 scaffold_27 + intron 2792841-2792968 asmbl_36114,asmbl_36115,asmbl_36116 scaffold_27 + retained_intron 2792841-2792968 asmbl_36111 // Retained and Spliced Intron # retained_intron 2793632-2795233 (orient:+) max_ev_support = 3 # spliced_intron 2793632-2795233 (orient:+) max_ev_support = 1 scaffold_27 + intron 2793632-2795233 asmbl_36114,asmbl_36115,asmbl_36116 scaffold_27 + retained_intron 2793632-2795233 asmbl_36111 // Exon Skipping and Retention # skipped_exon 2814303-2815090 (orient:+) max_ev_support = 2 # retained_exon 2814732-2814833 (orient:+) max_ev_support = 3 scaffold_27 + retained_exons 2814732-2814833 asmbl_36117 scaffold_27 + intron_skips_exon 2814303-2815090 asmbl_36118,asmbl_36119,asmbl_36122 // Exon Skipping and Retention # skipped_exon 2814408-2815090 (orient:+) max_ev_support = 1 # retained_exon 2814732-2814833 (orient:+) max_ev_support = 3 scaffold_27 + retained_exons 2814732-2814833 asmbl_36117 scaffold_27 + intron_skips_exon 2814408-2815090 asmbl_36123 // Exon Skipping and Retention # skipped_exon 2815397-2816799 (orient:+) max_ev_support = 2 # retained_exon 2816041-2816073 (orient:+) max_ev_support = 2 scaffold_27 + retained_exons 2816041-2816073 asmbl_36117,asmbl_36119 scaffold_27 + intron_skips_exon 2815397-2816799 asmbl_36118,asmbl_36122,asmbl_36123 // Exon Skipping and Retention # skipped_exon 2829483-2832414 (orient:+) max_ev_support = 2 # retained_exon 2830195-2830215 (orient:+) max_ev_support = 2 scaffold_27 + retained_exons 2830195-2830215 asmbl_36126 scaffold_27 + intron_skips_exon 2829483-2832414 asmbl_36127 // Exon Skipping and Retention # skipped_exon 2829483-2830934 (orient:+) max_ev_support = 2 # retained_exon 2830195-2830215 (orient:+) max_ev_support = 2 scaffold_27 + retained_exons 2830195-2830215 asmbl_36126 scaffold_27 + intron_skips_exon 2829483-2830934 asmbl_36129 // Exon Skipping and Retention # skipped_exon 2830216-2832414 (orient:+) max_ev_support = 2 # retained_exon 2830935-2831768 (orient:+) max_ev_support = 2 scaffold_27 + retained_exons 2830935-2831768 asmbl_36129 scaffold_27 + intron_skips_exon 2830216-2832414 asmbl_36126 // Retained and Spliced Intron # retained_intron 2881786-2881921 (orient:+) max_ev_support = 1 # spliced_intron 2881786-2881921 (orient:+) max_ev_support = 2 scaffold_27 + intron 2881786-2881921 asmbl_36142,asmbl_36143,asmbl_36144,asmbl_36146 scaffold_27 + retained_intron 2881786-2881921 asmbl_36147 // Retained and Spliced Intron # retained_intron 3000478-3000572 (orient:+) max_ev_support = 2 # spliced_intron 3000478-3000572 (orient:+) max_ev_support = 2 scaffold_27 + intron 3000478-3000572 asmbl_36150,asmbl_36155,asmbl_36156,asmbl_36158,asmbl_36159 scaffold_27 + retained_intron 3000478-3000572 asmbl_36151,asmbl_36154,asmbl_36160 // Retained and Spliced Intron # retained_intron 2998993-2999967 (orient:+) max_ev_support = 1 # spliced_intron 2998993-2999967 (orient:+) max_ev_support = 2 scaffold_27 + intron 2998993-2999967 asmbl_36150,asmbl_36151,asmbl_36154,asmbl_36155,asmbl_36156,asmbl_36158 scaffold_27 + retained_intron 2998993-2999967 asmbl_36152,asmbl_36157 // Retained and Spliced Intron # retained_intron 3000034-3000124 (orient:+) max_ev_support = 1 # spliced_intron 3000034-3000124 (orient:+) max_ev_support = 2 scaffold_27 + intron 3000034-3000124 asmbl_36150,asmbl_36151,asmbl_36154,asmbl_36155,asmbl_36156,asmbl_36158,asmbl_36159 scaffold_27 + retained_intron 3000034-3000124 asmbl_36152,asmbl_36157 // Retained and Spliced Intron # retained_intron 2998365-2998500 (orient:+) max_ev_support = 1 # spliced_intron 2998365-2998500 (orient:+) max_ev_support = 2 scaffold_27 + intron 2998365-2998500 asmbl_36150,asmbl_36151,asmbl_36152,asmbl_36154,asmbl_36155,asmbl_36156,asmbl_36157,asmbl_36158 scaffold_27 + retained_intron 2998365-2998500 asmbl_36153 // Retained and Spliced Intron # retained_intron 2997750-2997932 (orient:+) max_ev_support = 1 # spliced_intron 2997750-2997932 (orient:+) max_ev_support = 1 scaffold_27 + intron 2997750-2997932 asmbl_36156 scaffold_27 + retained_intron 2997750-2997932 asmbl_36155,asmbl_36157,asmbl_36158 // Retained and Spliced Intron # retained_intron 3000638-3000932 (orient:+) max_ev_support = 1 # spliced_intron 3000638-3000932 (orient:+) max_ev_support = 2 scaffold_27 + intron 3000638-3000932 asmbl_36150,asmbl_36151,asmbl_36154,asmbl_36155,asmbl_36156,asmbl_36158,asmbl_36159 scaffold_27 + retained_intron 3000638-3000932 asmbl_36160 // Exon Skipping and Retention # skipped_exon 3023796-3025670 (orient:+) max_ev_support = 1 # retained_exon 3024865-3024965 (orient:+) max_ev_support = 1 scaffold_27 + retained_exons 3024865-3024965 asmbl_36169 scaffold_27 + intron_skips_exon 3023796-3025670 asmbl_36162,asmbl_36163,asmbl_36171 // Exon Skipping and Retention # skipped_exon 3020508-3022748 (orient:+) max_ev_support = 1 # retained_exon 3020770-3020793 (orient:+) max_ev_support = 1 scaffold_27 + retained_exons 3020770-3020793 asmbl_36171 scaffold_27 + intron_skips_exon 3020508-3022748 asmbl_36162,asmbl_36163,asmbl_36169,asmbl_36172 // Retained and Spliced Intron # retained_intron 3063415-3063502 (orient:+) max_ev_support = 4 # spliced_intron 3063415-3063502 (orient:+) max_ev_support = 1 scaffold_27 + intron 3063415-3063502 asmbl_36180 scaffold_27 + retained_intron 3063415-3063502 asmbl_36177,asmbl_36178,asmbl_36179 // Retained and Spliced Intron # retained_intron 3104389-3104460 (orient:+) max_ev_support = 1 # spliced_intron 3104389-3104460 (orient:+) max_ev_support = 2 scaffold_27 + intron 3104389-3104460 asmbl_36183 scaffold_27 + retained_intron 3104389-3104460 asmbl_36184 // Retained and Spliced Intron # retained_intron 3130050-3130150 (orient:+) max_ev_support = 2 # spliced_intron 3130050-3130150 (orient:+) max_ev_support = 2 scaffold_27 + intron 3130050-3130150 asmbl_36188,asmbl_36190,asmbl_36191 scaffold_27 + retained_intron 3130050-3130150 asmbl_36189 // Retained and Spliced Intron # retained_intron 3624384-3624770 (orient:+) max_ev_support = 2 # spliced_intron 3624384-3624770 (orient:+) max_ev_support = 3 scaffold_27 + intron 3624384-3624770 asmbl_36212,asmbl_36216 scaffold_27 + retained_intron 3624384-3624770 asmbl_36213,asmbl_36215,asmbl_36217 // Retained and Spliced Intron # retained_intron 3624875-3625095 (orient:+) max_ev_support = 2 # spliced_intron 3624875-3625095 (orient:+) max_ev_support = 3 scaffold_27 + intron 3624875-3625095 asmbl_36212,asmbl_36216,asmbl_36217 scaffold_27 + retained_intron 3624875-3625095 asmbl_36213,asmbl_36215 // Retained and Spliced Intron # retained_intron 3872262-3872498 (orient:+) max_ev_support = 2 # spliced_intron 3872262-3872498 (orient:+) max_ev_support = 1 scaffold_27 + intron 3872262-3872498 asmbl_36228 scaffold_27 + retained_intron 3872262-3872498 asmbl_36227 // Retained and Spliced Intron # retained_intron 3874917-3875034 (orient:+) max_ev_support = 1 # spliced_intron 3874917-3875034 (orient:+) max_ev_support = 1 scaffold_27 + intron 3874917-3875034 asmbl_36229,asmbl_36231 scaffold_27 + retained_intron 3874917-3875034 asmbl_36230 // Exon Skipping and Retention # skipped_exon 3972325-3972647 (orient:+) max_ev_support = 1 # retained_exon 3972444-3972536 (orient:+) max_ev_support = 4 scaffold_27 + retained_exons 3972444-3972536 asmbl_36241 scaffold_27 + intron_skips_exon 3972325-3972647 asmbl_36242 // Retained and Spliced Intron # retained_intron 4004657-4005068 (orient:+) max_ev_support = 2 # spliced_intron 4004657-4005068 (orient:+) max_ev_support = 2 scaffold_27 + intron 4004657-4005068 asmbl_36243,asmbl_36245,asmbl_36248,asmbl_36253 scaffold_27 + retained_intron 4004657-4005068 asmbl_36244,asmbl_36249,asmbl_36250,asmbl_36252 // Retained and Spliced Intron # retained_intron 4123018-4123064 (orient:+) max_ev_support = 5 # spliced_intron 4123018-4123064 (orient:+) max_ev_support = 1 scaffold_27 + intron 4123018-4123064 asmbl_36256 scaffold_27 + retained_intron 4123018-4123064 asmbl_36255 // Retained and Spliced Intron # retained_intron 4186686-4186765 (orient:+) max_ev_support = 1 # spliced_intron 4186686-4186765 (orient:+) max_ev_support = 2 scaffold_27 + intron 4186686-4186765 asmbl_36259 scaffold_27 + retained_intron 4186686-4186765 asmbl_36260 // Retained and Spliced Intron # retained_intron 4526378-4526769 (orient:+) max_ev_support = 1 # spliced_intron 4526378-4526769 (orient:+) max_ev_support = 1 scaffold_27 + intron 4526378-4526769 asmbl_36302,asmbl_36303 scaffold_27 + retained_intron 4526378-4526769 asmbl_36308 // Retained and Spliced Intron # retained_intron 4755122-4755207 (orient:+) max_ev_support = 1 # spliced_intron 4755122-4755207 (orient:+) max_ev_support = 1 scaffold_27 + intron 4755122-4755207 asmbl_36313 scaffold_27 + retained_intron 4755122-4755207 asmbl_36314 // Retained and Spliced Intron # retained_intron 4938413-4938601 (orient:+) max_ev_support = 1 # spliced_intron 4938413-4938601 (orient:+) max_ev_support = 2 scaffold_27 + intron 4938413-4938601 asmbl_36325,asmbl_36326,asmbl_36328,asmbl_36329 scaffold_27 + retained_intron 4938413-4938601 asmbl_36327,asmbl_36330 // Retained and Spliced Intron # retained_intron 4961885-4961915 (orient:+) max_ev_support = 1 # spliced_intron 4961885-4961915 (orient:+) max_ev_support = 1 scaffold_27 + intron 4961885-4961915 asmbl_36332 scaffold_27 + retained_intron 4961885-4961915 asmbl_36333 // Exon Skipping and Retention # skipped_exon 5015909-5017714 (orient:+) max_ev_support = 3 # retained_exon 5017042-5017098 (orient:+) max_ev_support = 2 scaffold_27 + retained_exons 5017042-5017098 asmbl_36335,asmbl_36336 scaffold_27 + intron_skips_exon 5015909-5017714 asmbl_36334 // Retained and Spliced Intron # retained_intron 5686546-5686785 (orient:+) max_ev_support = 4 # spliced_intron 5686546-5686785 (orient:+) max_ev_support = 2 scaffold_27 + intron 5686546-5686785 asmbl_36359,asmbl_36360 scaffold_27 + retained_intron 5686546-5686785 asmbl_36356,asmbl_36357,asmbl_36358 // Retained and Spliced Intron # retained_intron 6069445-6069599 (orient:+) max_ev_support = 2 # spliced_intron 6069445-6069599 (orient:+) max_ev_support = 2 scaffold_27 + intron 6069445-6069599 asmbl_36368 scaffold_27 + retained_intron 6069445-6069599 asmbl_36369,asmbl_36370 // Exon Skipping and Retention # skipped_exon 6195178-6196958 (orient:+) max_ev_support = 1 # retained_exon 6196555-6196599 (orient:+) max_ev_support = 1 scaffold_27 + retained_exons 6196555-6196599 asmbl_36378,asmbl_36380 scaffold_27 + intron_skips_exon 6195178-6196958 asmbl_36379 // Exon Skipping and Retention # skipped_exon 6194706-6196554 (orient:+) max_ev_support = 1 # retained_exon 6195097-6195177 (orient:+) max_ev_support = 1 scaffold_27 + retained_exons 6195097-6195177 asmbl_36379 scaffold_27 + intron_skips_exon 6194706-6196554 asmbl_36378,asmbl_36380 // Retained and Spliced Intron # retained_intron 6196600-6196958 (orient:+) max_ev_support = 1 # spliced_intron 6196600-6196958 (orient:+) max_ev_support = 2 scaffold_27 + intron 6196600-6196958 asmbl_36378,asmbl_36380,asmbl_36383 scaffold_27 + retained_intron 6196600-6196958 asmbl_36386 // Retained and Spliced Intron # retained_intron 6258368-6258607 (orient:+) max_ev_support = 2 # spliced_intron 6258368-6258607 (orient:+) max_ev_support = 2 scaffold_27 + intron 6258368-6258607 asmbl_36394 scaffold_27 + retained_intron 6258368-6258607 asmbl_36393 // Retained and Spliced Intron # retained_intron 6258393-6258607 (orient:+) max_ev_support = 2 # spliced_intron 6258393-6258607 (orient:+) max_ev_support = 1 scaffold_27 + intron 6258393-6258607 asmbl_36397 scaffold_27 + retained_intron 6258393-6258607 asmbl_36393 // Retained and Spliced Intron # retained_intron 6258393-6258777 (orient:+) max_ev_support = 2 # spliced_intron 6258393-6258777 (orient:+) max_ev_support = 1 scaffold_27 + intron 6258393-6258777 asmbl_36396,asmbl_36398 scaffold_27 + retained_intron 6258393-6258777 asmbl_36393 // Retained and Spliced Intron # retained_intron 6742224-6742264 (orient:+) max_ev_support = 2 # spliced_intron 6742224-6742264 (orient:+) max_ev_support = 1 scaffold_27 + intron 6742224-6742264 asmbl_36412 scaffold_27 + retained_intron 6742224-6742264 asmbl_36411,asmbl_36413 // Retained and Spliced Intron # retained_intron 7277803-7277891 (orient:+) max_ev_support = 3 # spliced_intron 7277803-7277891 (orient:+) max_ev_support = 1 scaffold_27 + intron 7277803-7277891 asmbl_36446 scaffold_27 + retained_intron 7277803-7277891 asmbl_36445 // Retained and Spliced Intron # retained_intron 7277981-7278212 (orient:+) max_ev_support = 3 # spliced_intron 7277981-7278212 (orient:+) max_ev_support = 1 scaffold_27 + intron 7277981-7278212 asmbl_36446 scaffold_27 + retained_intron 7277981-7278212 asmbl_36445 // Retained and Spliced Intron # retained_intron 7449983-7450375 (orient:+) max_ev_support = 3 # spliced_intron 7449983-7450375 (orient:+) max_ev_support = 1 scaffold_27 + intron 7449983-7450375 asmbl_36453 scaffold_27 + retained_intron 7449983-7450375 asmbl_36452 // Retained and Spliced Intron # retained_intron 7522152-7522244 (orient:+) max_ev_support = 1 # spliced_intron 7522152-7522244 (orient:+) max_ev_support = 1 scaffold_27 + intron 7522152-7522244 asmbl_36467 scaffold_27 + retained_intron 7522152-7522244 asmbl_36466 // Exon Skipping and Retention # skipped_exon 7521642-7522241 (orient:+) max_ev_support = 2 # retained_exon 7522112-7522151 (orient:+) max_ev_support = 1 scaffold_27 + retained_exons 7522112-7522151 asmbl_36467 scaffold_27 + intron_skips_exon 7521642-7522241 asmbl_36464 // Exon Skipping and Retention # skipped_exon 7521642-7522244 (orient:+) max_ev_support = 1 # retained_exon 7522112-7522151 (orient:+) max_ev_support = 1 scaffold_27 + retained_exons 7522112-7522151 asmbl_36467 scaffold_27 + intron_skips_exon 7521642-7522244 asmbl_36465 // Retained and Spliced Intron # retained_intron 8919877-8919990 (orient:+) max_ev_support = 3 # spliced_intron 8919877-8919990 (orient:+) max_ev_support = 1 scaffold_27 + intron 8919877-8919990 asmbl_36479 scaffold_27 + retained_intron 8919877-8919990 asmbl_36478 // Retained and Spliced Intron # retained_intron 9917345-9917430 (orient:+) max_ev_support = 2 # spliced_intron 9917345-9917430 (orient:+) max_ev_support = 1 scaffold_27 + intron 9917345-9917430 asmbl_36543 scaffold_27 + retained_intron 9917345-9917430 asmbl_36540 // Retained and Spliced Intron # retained_intron 9968387-9968472 (orient:+) max_ev_support = 2 # spliced_intron 9968387-9968472 (orient:+) max_ev_support = 2 scaffold_27 + intron 9968387-9968472 asmbl_36553 scaffold_27 + retained_intron 9968387-9968472 asmbl_36552,asmbl_36554 // Exon Skipping and Retention # skipped_exon 9989075-9989784 (orient:+) max_ev_support = 1 # retained_exon 9989337-9989454 (orient:+) max_ev_support = 3 scaffold_27 + retained_exons 9989337-9989454 asmbl_36555 scaffold_27 + intron_skips_exon 9989075-9989784 asmbl_36556 // Retained and Spliced Intron # retained_intron 128244-128281 (orient:-) max_ev_support = 1 # spliced_intron 128244-128281 (orient:-) max_ev_support = 3 scaffold_27 - intron 128244-128281 asmbl_36635,asmbl_36636 scaffold_27 - retained_intron 128244-128281 asmbl_36637 // Retained and Spliced Intron # retained_intron 129467-131958 (orient:-) max_ev_support = 2 # spliced_intron 129467-131958 (orient:-) max_ev_support = 3 scaffold_27 - intron 129467-131958 asmbl_36635,asmbl_36637 scaffold_27 - retained_intron 129467-131958 asmbl_36638,asmbl_36639 // Exon Skipping and Retention # skipped_exon 144985-146719 (orient:-) max_ev_support = 1 # retained_exon 145842-145925 (orient:-) max_ev_support = 2 scaffold_27 - retained_exons 145842-145925 asmbl_36644 scaffold_27 - intron_skips_exon 144985-146719 asmbl_36646 // Retained and Spliced Intron # retained_intron 157697-157951 (orient:-) max_ev_support = 3 # spliced_intron 157697-157951 (orient:-) max_ev_support = 2 scaffold_27 - intron 157697-157951 asmbl_36650 scaffold_27 - retained_intron 157697-157951 asmbl_36649,asmbl_36651 // Retained and Spliced Intron # retained_intron 158035-158158 (orient:-) max_ev_support = 3 # spliced_intron 158035-158158 (orient:-) max_ev_support = 2 scaffold_27 - intron 158035-158158 asmbl_36650,asmbl_36651 scaffold_27 - retained_intron 158035-158158 asmbl_36649 // Retained and Spliced Intron # retained_intron 160376-160481 (orient:-) max_ev_support = 2 # spliced_intron 160376-160481 (orient:-) max_ev_support = 3 scaffold_27 - intron 160376-160481 asmbl_36653 scaffold_27 - retained_intron 160376-160481 asmbl_36654 // Retained and Spliced Intron # retained_intron 313987-314158 (orient:-) max_ev_support = 2 # spliced_intron 313987-314158 (orient:-) max_ev_support = 1 scaffold_27 - intron 313987-314158 asmbl_36658,asmbl_36660,asmbl_36661,asmbl_36662,asmbl_36663 scaffold_27 - retained_intron 313987-314158 asmbl_36657 // Retained and Spliced Intron # retained_intron 313987-314458 (orient:-) max_ev_support = 2 # spliced_intron 313987-314458 (orient:-) max_ev_support = 1 scaffold_27 - intron 313987-314458 asmbl_36659 scaffold_27 - retained_intron 313987-314458 asmbl_36657 // Retained and Spliced Intron # retained_intron 314278-314458 (orient:-) max_ev_support = 2 # spliced_intron 314278-314458 (orient:-) max_ev_support = 1 scaffold_27 - intron 314278-314458 asmbl_36658,asmbl_36660,asmbl_36661,asmbl_36662,asmbl_36663 scaffold_27 - retained_intron 314278-314458 asmbl_36657 // Retained and Spliced Intron # retained_intron 314564-314644 (orient:-) max_ev_support = 2 # spliced_intron 314564-314644 (orient:-) max_ev_support = 1 scaffold_27 - intron 314564-314644 asmbl_36658,asmbl_36659,asmbl_36660,asmbl_36661,asmbl_36662,asmbl_36663 scaffold_27 - retained_intron 314564-314644 asmbl_36657 // Retained and Spliced Intron # retained_intron 315477-315621 (orient:-) max_ev_support = 1 # spliced_intron 315477-315621 (orient:-) max_ev_support = 1 scaffold_27 - intron 315477-315621 asmbl_36661,asmbl_36663 scaffold_27 - retained_intron 315477-315621 asmbl_36657,asmbl_36658,asmbl_36659,asmbl_36660,asmbl_36662 // Exon Skipping and Retention # skipped_exon 313987-314458 (orient:-) max_ev_support = 1 # retained_exon 314159-314277 (orient:-) max_ev_support = 1 scaffold_27 - retained_exons 314159-314277 asmbl_36658,asmbl_36660,asmbl_36661,asmbl_36662,asmbl_36663 scaffold_27 - intron_skips_exon 313987-314458 asmbl_36659 // Retained and Spliced Intron # retained_intron 314737-315174 (orient:-) max_ev_support = 1 # spliced_intron 314737-315174 (orient:-) max_ev_support = 2 scaffold_27 - intron 314737-315174 asmbl_36657,asmbl_36661 scaffold_27 - retained_intron 314737-315174 asmbl_36658,asmbl_36659,asmbl_36662,asmbl_36663 // Retained and Spliced Intron # retained_intron 314755-315174 (orient:-) max_ev_support = 1 # spliced_intron 314755-315174 (orient:-) max_ev_support = 1 scaffold_27 - intron 314755-315174 asmbl_36660 scaffold_27 - retained_intron 314755-315174 asmbl_36658,asmbl_36659,asmbl_36662,asmbl_36663 // Retained and Spliced Intron # retained_intron 358421-358649 (orient:-) max_ev_support = 2 # spliced_intron 358421-358649 (orient:-) max_ev_support = 3 scaffold_27 - intron 358421-358649 asmbl_36677 scaffold_27 - retained_intron 358421-358649 asmbl_36678 // Retained and Spliced Intron # retained_intron 381928-382157 (orient:-) max_ev_support = 2 # spliced_intron 381928-382157 (orient:-) max_ev_support = 2 scaffold_27 - intron 381928-382157 asmbl_36680 scaffold_27 - retained_intron 381928-382157 asmbl_36681 // Retained and Spliced Intron # retained_intron 381931-382927 (orient:-) max_ev_support = 4 # spliced_intron 381931-382927 (orient:-) max_ev_support = 2 scaffold_27 - intron 381931-382927 asmbl_36682,asmbl_36683 scaffold_27 - retained_intron 381931-382927 asmbl_36681 // Exon Skipping and Retention # skipped_exon 381931-384414 (orient:-) max_ev_support = 2 # retained_exon 382928-383039 (orient:-) max_ev_support = 2 scaffold_27 - retained_exons 382928-383039 asmbl_36683 scaffold_27 - intron_skips_exon 381931-384414 asmbl_36684 // Retained and Spliced Intron # retained_intron 390464-390593 (orient:-) max_ev_support = 1 # spliced_intron 390464-390593 (orient:-) max_ev_support = 1 scaffold_27 - intron 390464-390593 asmbl_36688 scaffold_27 - retained_intron 390464-390593 asmbl_36687 // Retained and Spliced Intron # retained_intron 512494-512580 (orient:-) max_ev_support = 1 # spliced_intron 512494-512580 (orient:-) max_ev_support = 1 scaffold_27 - intron 512494-512580 asmbl_36696,asmbl_36698 scaffold_27 - retained_intron 512494-512580 asmbl_36695,asmbl_36697 // Retained and Spliced Intron # retained_intron 512659-512738 (orient:-) max_ev_support = 3 # spliced_intron 512659-512738 (orient:-) max_ev_support = 1 scaffold_27 - intron 512659-512738 asmbl_36697,asmbl_36698 scaffold_27 - retained_intron 512659-512738 asmbl_36695,asmbl_36696 // Exon Skipping and Retention # skipped_exon 626799-628881 (orient:-) max_ev_support = 2 # retained_exon 627096-627300 (orient:-) max_ev_support = 2 scaffold_27 - retained_exons 627096-627300 asmbl_36701,asmbl_36707 scaffold_27 - intron_skips_exon 626799-628881 asmbl_36703 // Retained and Spliced Intron # retained_intron 638380-638592 (orient:-) max_ev_support = 2 # spliced_intron 638380-638592 (orient:-) max_ev_support = 2 scaffold_27 - intron 638380-638592 asmbl_36708 scaffold_27 - retained_intron 638380-638592 asmbl_36709 // Retained and Spliced Intron # retained_intron 638419-638515 (orient:-) max_ev_support = 2 # spliced_intron 638419-638515 (orient:-) max_ev_support = 2 scaffold_27 - intron 638419-638515 asmbl_36710,asmbl_36712 scaffold_27 - retained_intron 638419-638515 asmbl_36709 // Retained and Spliced Intron # retained_intron 927062-927428 (orient:-) max_ev_support = 3 # spliced_intron 927062-927428 (orient:-) max_ev_support = 3 scaffold_27 - intron 927062-927428 asmbl_36715,asmbl_36716 scaffold_27 - retained_intron 927062-927428 asmbl_36714 // Retained and Spliced Intron # retained_intron 931032-931338 (orient:-) max_ev_support = 3 # spliced_intron 931032-931338 (orient:-) max_ev_support = 1 scaffold_27 - intron 931032-931338 asmbl_36720,asmbl_36722 scaffold_27 - retained_intron 931032-931338 asmbl_36718,asmbl_36719,asmbl_36721 // Exon Skipping and Retention # skipped_exon 932171-933022 (orient:-) max_ev_support = 1 # retained_exon 932682-932837 (orient:-) max_ev_support = 3 scaffold_27 - retained_exons 932682-932837 asmbl_36718,asmbl_36719,asmbl_36720,asmbl_36722 scaffold_27 - intron_skips_exon 932171-933022 asmbl_36721 // Retained and Spliced Intron # retained_intron 1026348-1026649 (orient:-) max_ev_support = 1 # spliced_intron 1026348-1026649 (orient:-) max_ev_support = 2 scaffold_27 - intron 1026348-1026649 asmbl_36739,asmbl_36740,asmbl_36742 scaffold_27 - retained_intron 1026348-1026649 asmbl_36741 // Retained and Spliced Intron # retained_intron 1424171-1424344 (orient:-) max_ev_support = 1 # spliced_intron 1424171-1424344 (orient:-) max_ev_support = 2 scaffold_27 - intron 1424171-1424344 asmbl_36757 scaffold_27 - retained_intron 1424171-1424344 asmbl_36759 // Retained and Spliced Intron # retained_intron 1638883-1639004 (orient:-) max_ev_support = 1 # spliced_intron 1638883-1639004 (orient:-) max_ev_support = 2 scaffold_27 - intron 1638883-1639004 asmbl_36774 scaffold_27 - retained_intron 1638883-1639004 asmbl_36775 // Exon Skipping and Retention # skipped_exon 1728475-1730643 (orient:-) max_ev_support = 2 # retained_exon 1729172-1729204 (orient:-) max_ev_support = 2 scaffold_27 - retained_exons 1729172-1729204 asmbl_36783 scaffold_27 - intron_skips_exon 1728475-1730643 asmbl_36784 // Exon Skipping and Retention # skipped_exon 1983237-1983877 (orient:-) max_ev_support = 2 # retained_exon 1983496-1983703 (orient:-) max_ev_support = 2 scaffold_27 - retained_exons 1983496-1983703 asmbl_36800 scaffold_27 - intron_skips_exon 1983237-1983877 asmbl_36801 // Exon Skipping and Retention # skipped_exon 2550132-2552911 (orient:-) max_ev_support = 2 # retained_exon 2551118-2551162 (orient:-) max_ev_support = 2 scaffold_27 - retained_exons 2551118-2551162 asmbl_36829 scaffold_27 - intron_skips_exon 2550132-2552911 asmbl_36828 // Retained and Spliced Intron # retained_intron 2824529-2824739 (orient:-) max_ev_support = 1 # spliced_intron 2824529-2824739 (orient:-) max_ev_support = 2 scaffold_27 - intron 2824529-2824739 asmbl_36860,asmbl_36863 scaffold_27 - retained_intron 2824529-2824739 asmbl_36862 // Retained and Spliced Intron # retained_intron 2883096-2883240 (orient:-) max_ev_support = 2 # spliced_intron 2883096-2883240 (orient:-) max_ev_support = 2 scaffold_27 - intron 2883096-2883240 asmbl_36865,asmbl_36867 scaffold_27 - retained_intron 2883096-2883240 asmbl_36866 // Retained and Spliced Intron # retained_intron 2903073-2903179 (orient:-) max_ev_support = 2 # spliced_intron 2903073-2903179 (orient:-) max_ev_support = 3 scaffold_27 - intron 2903073-2903179 asmbl_36868 scaffold_27 - retained_intron 2903073-2903179 asmbl_36870 // Retained and Spliced Intron # retained_intron 2903102-2903179 (orient:-) max_ev_support = 2 # spliced_intron 2903102-2903179 (orient:-) max_ev_support = 1 scaffold_27 - intron 2903102-2903179 asmbl_36869 scaffold_27 - retained_intron 2903102-2903179 asmbl_36870 // Retained and Spliced Intron # retained_intron 3090524-3090653 (orient:-) max_ev_support = 2 # spliced_intron 3090524-3090653 (orient:-) max_ev_support = 2 scaffold_27 - intron 3090524-3090653 asmbl_36886,asmbl_36887,asmbl_36889,asmbl_36890,asmbl_36893 scaffold_27 - retained_intron 3090524-3090653 asmbl_36888,asmbl_36892 // Retained and Spliced Intron # retained_intron 3093328-3093432 (orient:-) max_ev_support = 2 # spliced_intron 3093328-3093432 (orient:-) max_ev_support = 1 scaffold_27 - intron 3093328-3093432 asmbl_36893 scaffold_27 - retained_intron 3093328-3093432 asmbl_36889,asmbl_36891,asmbl_36892,asmbl_36894 // Exon Skipping and Retention # skipped_exon 3091909-3093432 (orient:-) max_ev_support = 2 # retained_exon 3093282-3093327 (orient:-) max_ev_support = 1 scaffold_27 - retained_exons 3093282-3093327 asmbl_36893 scaffold_27 - intron_skips_exon 3091909-3093432 asmbl_36887 // Retained and Spliced Intron # retained_intron 3297546-3297880 (orient:-) max_ev_support = 3 # spliced_intron 3297546-3297880 (orient:-) max_ev_support = 1 scaffold_27 - intron 3297546-3297880 asmbl_36907 scaffold_27 - retained_intron 3297546-3297880 asmbl_36906 // Retained and Spliced Intron # retained_intron 3742551-3742650 (orient:-) max_ev_support = 2 # spliced_intron 3742551-3742650 (orient:-) max_ev_support = 2 scaffold_27 - intron 3742551-3742650 asmbl_36920,asmbl_36921 scaffold_27 - retained_intron 3742551-3742650 asmbl_36919,asmbl_36922 // Retained and Spliced Intron # retained_intron 3741581-3742122 (orient:-) max_ev_support = 2 # spliced_intron 3741581-3742122 (orient:-) max_ev_support = 2 scaffold_27 - intron 3741581-3742122 asmbl_36919,asmbl_36920 scaffold_27 - retained_intron 3741581-3742122 asmbl_36921,asmbl_36922 // Exon Skipping and Retention # skipped_exon 3920125-3920693 (orient:-) max_ev_support = 1 # retained_exon 3920227-3920466 (orient:-) max_ev_support = 2 scaffold_27 - retained_exons 3920227-3920321,3920403-3920466 asmbl_36938 scaffold_27 - intron_skips_exon 3920125-3920693 asmbl_36939 // Retained and Spliced Intron # retained_intron 4799664-4799998 (orient:-) max_ev_support = 2 # spliced_intron 4799664-4799998 (orient:-) max_ev_support = 3 scaffold_27 - intron 4799664-4799998 asmbl_36970,asmbl_36972 scaffold_27 - retained_intron 4799664-4799998 asmbl_36971 // Retained and Spliced Intron # retained_intron 5049610-5049786 (orient:-) max_ev_support = 3 # spliced_intron 5049610-5049786 (orient:-) max_ev_support = 1 scaffold_27 - intron 5049610-5049786 asmbl_36982,asmbl_36983 scaffold_27 - retained_intron 5049610-5049786 asmbl_36981 // Retained and Spliced Intron # retained_intron 5049880-5050708 (orient:-) max_ev_support = 3 # spliced_intron 5049880-5050708 (orient:-) max_ev_support = 1 scaffold_27 - intron 5049880-5050708 asmbl_36982 scaffold_27 - retained_intron 5049880-5050708 asmbl_36981,asmbl_36983 // Retained and Spliced Intron # retained_intron 5320907-5320932 (orient:-) max_ev_support = 2 # spliced_intron 5320907-5320932 (orient:-) max_ev_support = 1 scaffold_27 - intron 5320907-5320932 asmbl_37003 scaffold_27 - retained_intron 5320907-5320932 asmbl_37002 // Exon Skipping and Retention # skipped_exon 5797927-5799064 (orient:-) max_ev_support = 1 # retained_exon 5798208-5798314 (orient:-) max_ev_support = 1 scaffold_27 - retained_exons 5798208-5798314 asmbl_37025 scaffold_27 - intron_skips_exon 5797927-5799064 asmbl_37024 // Retained and Spliced Intron # retained_intron 6482619-6483087 (orient:-) max_ev_support = 2 # spliced_intron 6482619-6483087 (orient:-) max_ev_support = 1 scaffold_27 - intron 6482619-6483087 asmbl_37057 scaffold_27 - retained_intron 6482619-6483087 asmbl_37056 // Exon Skipping and Retention # skipped_exon 6610373-6611472 (orient:-) max_ev_support = 2 # retained_exon 6610883-6610940 (orient:-) max_ev_support = 1 scaffold_27 - retained_exons 6610883-6610940 asmbl_37068,asmbl_37069 scaffold_27 - intron_skips_exon 6610373-6611472 asmbl_37067 // Retained and Spliced Intron # retained_intron 6702554-6703059 (orient:-) max_ev_support = 2 # spliced_intron 6702554-6703059 (orient:-) max_ev_support = 1 scaffold_27 - intron 6702554-6703059 asmbl_37078 scaffold_27 - retained_intron 6702554-6703059 asmbl_37077 // Retained and Spliced Intron # retained_intron 6782117-6782250 (orient:-) max_ev_support = 2 # spliced_intron 6782117-6782250 (orient:-) max_ev_support = 2 scaffold_27 - intron 6782117-6782250 asmbl_37082 scaffold_27 - retained_intron 6782117-6782250 asmbl_37079 // Exon Skipping and Retention # skipped_exon 6782129-6782627 (orient:-) max_ev_support = 2 # retained_exon 6782251-6782466 (orient:-) max_ev_support = 2 scaffold_27 - retained_exons 6782251-6782466 asmbl_37082 scaffold_27 - intron_skips_exon 6782129-6782627 asmbl_37080 // Exon Skipping and Retention # skipped_exon 6782164-6782627 (orient:-) max_ev_support = 2 # retained_exon 6782251-6782466 (orient:-) max_ev_support = 2 scaffold_27 - retained_exons 6782251-6782466 asmbl_37082 scaffold_27 - intron_skips_exon 6782164-6782627 asmbl_37081 // Retained and Spliced Intron # retained_intron 6782460-6782627 (orient:-) max_ev_support = 2 # spliced_intron 6782460-6782627 (orient:-) max_ev_support = 1 scaffold_27 - intron 6782460-6782627 asmbl_37084 scaffold_27 - retained_intron 6782460-6782627 asmbl_37083 // Retained and Spliced Intron # retained_intron 6782467-6782627 (orient:-) max_ev_support = 2 # spliced_intron 6782467-6782627 (orient:-) max_ev_support = 2 scaffold_27 - intron 6782467-6782627 asmbl_37079,asmbl_37082 scaffold_27 - retained_intron 6782467-6782627 asmbl_37083 // Exon Skipping and Retention # skipped_exon 7192145-7194416 (orient:-) max_ev_support = 2 # retained_exon 7193619-7193775 (orient:-) max_ev_support = 2 scaffold_27 - retained_exons 7193619-7193775 asmbl_37094 scaffold_27 - intron_skips_exon 7192145-7194416 asmbl_37093 // Exon Skipping and Retention # skipped_exon 9331939-9334621 (orient:-) max_ev_support = 2 # retained_exon 9333891-9333995 (orient:-) max_ev_support = 1 scaffold_27 - retained_exons 9333891-9333995 asmbl_37131 scaffold_27 - intron_skips_exon 9331939-9334621 asmbl_37130,asmbl_37133 // Retained and Spliced Intron # retained_intron 835-963 (orient:-) max_ev_support = 1 # spliced_intron 835-963 (orient:-) max_ev_support = 1 scaffold_2727 - intron 835-963 asmbl_37236 scaffold_2727 - retained_intron 835-963 asmbl_37237 // Retained and Spliced Intron # retained_intron 232681-232757 (orient:+) max_ev_support = 1 # spliced_intron 232681-232757 (orient:+) max_ev_support = 2 scaffold_28 + intron 232681-232757 asmbl_37255,asmbl_37257,asmbl_37258,asmbl_37259,asmbl_37260 scaffold_28 + retained_intron 232681-232757 asmbl_37256 // Retained and Spliced Intron # retained_intron 230628-230710 (orient:+) max_ev_support = 1 # spliced_intron 230628-230710 (orient:+) max_ev_support = 2 scaffold_28 + intron 230628-230710 asmbl_37255,asmbl_37256,asmbl_37258,asmbl_37259 scaffold_28 + retained_intron 230628-230710 asmbl_37257 // Retained and Spliced Intron # retained_intron 233915-233981 (orient:+) max_ev_support = 1 # spliced_intron 233915-233981 (orient:+) max_ev_support = 3 scaffold_28 + intron 233915-233981 asmbl_37255,asmbl_37257,asmbl_37258 scaffold_28 + retained_intron 233915-233981 asmbl_37259,asmbl_37260 // Retained and Spliced Intron # retained_intron 232029-232185 (orient:+) max_ev_support = 1 # spliced_intron 232029-232185 (orient:+) max_ev_support = 2 scaffold_28 + intron 232029-232185 asmbl_37255,asmbl_37256,asmbl_37257,asmbl_37259 scaffold_28 + retained_intron 232029-232185 asmbl_37260 // Retained and Spliced Intron # retained_intron 232029-232204 (orient:+) max_ev_support = 1 # spliced_intron 232029-232204 (orient:+) max_ev_support = 1 scaffold_28 + intron 232029-232204 asmbl_37258 scaffold_28 + retained_intron 232029-232204 asmbl_37260 // Retained and Spliced Intron # retained_intron 293837-294231 (orient:+) max_ev_support = 2 # spliced_intron 293837-294231 (orient:+) max_ev_support = 2 scaffold_28 + intron 293837-294231 asmbl_37267 scaffold_28 + retained_intron 293837-294231 asmbl_37268 // Retained and Spliced Intron # retained_intron 294106-294231 (orient:+) max_ev_support = 2 # spliced_intron 294106-294231 (orient:+) max_ev_support = 1 scaffold_28 + intron 294106-294231 asmbl_37269,asmbl_37270 scaffold_28 + retained_intron 294106-294231 asmbl_37268 // Retained and Spliced Intron # retained_intron 295538-295617 (orient:+) max_ev_support = 1 # spliced_intron 295538-295617 (orient:+) max_ev_support = 2 scaffold_28 + intron 295538-295617 asmbl_37267,asmbl_37268,asmbl_37269,asmbl_37270 scaffold_28 + retained_intron 295538-295617 asmbl_37271 // Retained and Spliced Intron # retained_intron 295738-295857 (orient:+) max_ev_support = 1 # spliced_intron 295738-295857 (orient:+) max_ev_support = 2 scaffold_28 + intron 295738-295857 asmbl_37267,asmbl_37268,asmbl_37269,asmbl_37270,asmbl_37271 scaffold_28 + retained_intron 295738-295857 asmbl_37272 // Retained and Spliced Intron # retained_intron 295957-296054 (orient:+) max_ev_support = 1 # spliced_intron 295957-296054 (orient:+) max_ev_support = 2 scaffold_28 + intron 295957-296054 asmbl_37267,asmbl_37268,asmbl_37269,asmbl_37270,asmbl_37271 scaffold_28 + retained_intron 295957-296054 asmbl_37272 // Retained and Spliced Intron # retained_intron 303659-303696 (orient:+) max_ev_support = 3 # spliced_intron 303659-303696 (orient:+) max_ev_support = 2 scaffold_28 + intron 303659-303696 asmbl_37274,asmbl_37276 scaffold_28 + retained_intron 303659-303696 asmbl_37273 // Retained and Spliced Intron # retained_intron 303659-303715 (orient:+) max_ev_support = 2 # spliced_intron 303659-303715 (orient:+) max_ev_support = 1 scaffold_28 + intron 303659-303715 asmbl_37275 scaffold_28 + retained_intron 303659-303715 asmbl_37273 // Retained and Spliced Intron # retained_intron 414159-414254 (orient:+) max_ev_support = 3 # spliced_intron 414159-414254 (orient:+) max_ev_support = 1 scaffold_28 + intron 414159-414254 asmbl_37280 scaffold_28 + retained_intron 414159-414254 asmbl_37279 // Retained and Spliced Intron # retained_intron 2109125-2109263 (orient:+) max_ev_support = 1 # spliced_intron 2109125-2109263 (orient:+) max_ev_support = 1 scaffold_28 + intron 2109125-2109263 asmbl_37323 scaffold_28 + retained_intron 2109125-2109263 asmbl_37324 // Retained and Spliced Intron # retained_intron 2198918-2199018 (orient:+) max_ev_support = 2 # spliced_intron 2198918-2199018 (orient:+) max_ev_support = 2 scaffold_28 + intron 2198918-2199018 asmbl_37344,asmbl_37347 scaffold_28 + retained_intron 2198918-2199018 asmbl_37345,asmbl_37346 // Retained and Spliced Intron # retained_intron 2199808-2199837 (orient:+) max_ev_support = 4 # spliced_intron 2199808-2199837 (orient:+) max_ev_support = 1 scaffold_28 + intron 2199808-2199837 asmbl_37350 scaffold_28 + retained_intron 2199808-2199837 asmbl_37348,asmbl_37349 // Retained and Spliced Intron # retained_intron 2199318-2199412 (orient:+) max_ev_support = 3 # spliced_intron 2199318-2199412 (orient:+) max_ev_support = 2 scaffold_28 + intron 2199318-2199412 asmbl_37348,asmbl_37350 scaffold_28 + retained_intron 2199318-2199412 asmbl_37349 // Retained and Spliced Intron # retained_intron 2404241-2404447 (orient:+) max_ev_support = 2 # spliced_intron 2404241-2404447 (orient:+) max_ev_support = 2 scaffold_28 + intron 2404241-2404447 asmbl_37364 scaffold_28 + retained_intron 2404241-2404447 asmbl_37363,asmbl_37365,asmbl_37366 // Retained and Spliced Intron # retained_intron 2622616-2622713 (orient:+) max_ev_support = 1 # spliced_intron 2622616-2622713 (orient:+) max_ev_support = 2 scaffold_28 + intron 2622616-2622713 asmbl_37387 scaffold_28 + retained_intron 2622616-2622713 asmbl_37388 // Exon Skipping and Retention # skipped_exon 2641399-2643017 (orient:+) max_ev_support = 3 # retained_exon 2642632-2642744 (orient:+) max_ev_support = 3 scaffold_28 + retained_exons 2642632-2642744 asmbl_37390 scaffold_28 + intron_skips_exon 2641399-2643017 asmbl_37391,asmbl_37392 // Retained and Spliced Intron # retained_intron 2651234-2651332 (orient:+) max_ev_support = 1 # spliced_intron 2651234-2651332 (orient:+) max_ev_support = 2 scaffold_28 + intron 2651234-2651332 asmbl_37394 scaffold_28 + retained_intron 2651234-2651332 asmbl_37395 // Retained and Spliced Intron # retained_intron 2721160-2721312 (orient:+) max_ev_support = 1 # spliced_intron 2721160-2721312 (orient:+) max_ev_support = 1 scaffold_28 + intron 2721160-2721312 asmbl_37407,asmbl_37411 scaffold_28 + retained_intron 2721160-2721312 asmbl_37406,asmbl_37408,asmbl_37409,asmbl_37410 // Retained and Spliced Intron # retained_intron 2724883-2725090 (orient:+) max_ev_support = 2 # spliced_intron 2724883-2725090 (orient:+) max_ev_support = 1 scaffold_28 + intron 2724883-2725090 asmbl_37407,asmbl_37408 scaffold_28 + retained_intron 2724883-2725090 asmbl_37406 // Retained and Spliced Intron # retained_intron 2724505-2724705 (orient:+) max_ev_support = 1 # spliced_intron 2724505-2724705 (orient:+) max_ev_support = 1 scaffold_28 + intron 2724505-2724705 asmbl_37406,asmbl_37407,asmbl_37408 scaffold_28 + retained_intron 2724505-2724705 asmbl_37409,asmbl_37411 // Exon Skipping and Retention # skipped_exon 3068473-3069082 (orient:+) max_ev_support = 2 # retained_exon 3068809-3068864 (orient:+) max_ev_support = 1 scaffold_28 + retained_exons 3068809-3068864 asmbl_37434 scaffold_28 + intron_skips_exon 3068473-3069082 asmbl_37432 // Exon Skipping and Retention # skipped_exon 3068473-3069108 (orient:+) max_ev_support = 2 # retained_exon 3068809-3068864 (orient:+) max_ev_support = 1 scaffold_28 + retained_exons 3068809-3068864 asmbl_37434 scaffold_28 + intron_skips_exon 3068473-3069108 asmbl_37433 // Retained and Spliced Intron # retained_intron 3167478-3167541 (orient:+) max_ev_support = 1 # spliced_intron 3167478-3167541 (orient:+) max_ev_support = 1 scaffold_28 + intron 3167478-3167541 asmbl_37453 scaffold_28 + retained_intron 3167478-3167541 asmbl_37451,asmbl_37452 // Retained and Spliced Intron # retained_intron 3168895-3169011 (orient:+) max_ev_support = 1 # spliced_intron 3168895-3169011 (orient:+) max_ev_support = 2 scaffold_28 + intron 3168895-3169011 asmbl_37450 scaffold_28 + retained_intron 3168895-3169011 asmbl_37451,asmbl_37452,asmbl_37453 // Exon Skipping and Retention # skipped_exon 3320505-3322855 (orient:+) max_ev_support = 2 # retained_exon 3321404-3321493 (orient:+) max_ev_support = 1 scaffold_28 + retained_exons 3321404-3321493 asmbl_37474 scaffold_28 + intron_skips_exon 3320505-3322855 asmbl_37473 // Exon Skipping and Retention # skipped_exon 3389665-3390454 (orient:+) max_ev_support = 1 # retained_exon 3389756-3389854 (orient:+) max_ev_support = 1 scaffold_28 + retained_exons 3389756-3389854 asmbl_37481 scaffold_28 + intron_skips_exon 3389665-3390454 asmbl_37480,asmbl_37482 // Exon Skipping and Retention # skipped_exon 3839816-3840769 (orient:+) max_ev_support = 2 # retained_exon 3839986-3840025 (orient:+) max_ev_support = 2 scaffold_28 + retained_exons 3839986-3840025 asmbl_37493 scaffold_28 + intron_skips_exon 3839816-3840769 asmbl_37494 // Retained and Spliced Intron # retained_intron 3968426-3968455 (orient:+) max_ev_support = 1 # spliced_intron 3968426-3968455 (orient:+) max_ev_support = 1 scaffold_28 + intron 3968426-3968455 asmbl_37510 scaffold_28 + retained_intron 3968426-3968455 asmbl_37511 // Retained and Spliced Intron # retained_intron 4267785-4268006 (orient:+) max_ev_support = 2 # spliced_intron 4267785-4268006 (orient:+) max_ev_support = 3 scaffold_28 + intron 4267785-4268006 asmbl_37532 scaffold_28 + retained_intron 4267785-4268006 asmbl_37533 // Retained and Spliced Intron # retained_intron 4839616-4841649 (orient:+) max_ev_support = 2 # spliced_intron 4839616-4841649 (orient:+) max_ev_support = 3 scaffold_28 + intron 4839616-4841649 asmbl_37548 scaffold_28 + retained_intron 4839616-4841649 asmbl_37549 // Exon Skipping and Retention # skipped_exon 5014513-5014754 (orient:+) max_ev_support = 2 # retained_exon 5014596-5014675 (orient:+) max_ev_support = 3 scaffold_28 + retained_exons 5014596-5014675 asmbl_37555,asmbl_37556 scaffold_28 + intron_skips_exon 5014513-5014754 asmbl_37559 // Retained and Spliced Intron # retained_intron 5011999-5012133 (orient:+) max_ev_support = 2 # spliced_intron 5011999-5012133 (orient:+) max_ev_support = 1 scaffold_28 + intron 5011999-5012133 asmbl_37555,asmbl_37560,asmbl_37561 scaffold_28 + retained_intron 5011999-5012133 asmbl_37557 // Retained and Spliced Intron # retained_intron 5014513-5014595 (orient:+) max_ev_support = 2 # spliced_intron 5014513-5014595 (orient:+) max_ev_support = 3 scaffold_28 + intron 5014513-5014595 asmbl_37555,asmbl_37556,asmbl_37557,asmbl_37560,asmbl_37561 scaffold_28 + retained_intron 5014513-5014595 asmbl_37558,asmbl_37562 // Retained and Spliced Intron # retained_intron 5014513-5014754 (orient:+) max_ev_support = 2 # spliced_intron 5014513-5014754 (orient:+) max_ev_support = 2 scaffold_28 + intron 5014513-5014754 asmbl_37559 scaffold_28 + retained_intron 5014513-5014754 asmbl_37558 // Retained and Spliced Intron # retained_intron 5014676-5014754 (orient:+) max_ev_support = 2 # spliced_intron 5014676-5014754 (orient:+) max_ev_support = 3 scaffold_28 + intron 5014676-5014754 asmbl_37555,asmbl_37556,asmbl_37562 scaffold_28 + retained_intron 5014676-5014754 asmbl_37558 // Retained and Spliced Intron # retained_intron 5010558-5011216 (orient:+) max_ev_support = 1 # spliced_intron 5010558-5011216 (orient:+) max_ev_support = 1 scaffold_28 + intron 5010558-5011216 asmbl_37555,asmbl_37560 scaffold_28 + retained_intron 5010558-5011216 asmbl_37561 // Retained and Spliced Intron # retained_intron 5022371-5022502 (orient:+) max_ev_support = 1 # spliced_intron 5022371-5022502 (orient:+) max_ev_support = 1 scaffold_28 + intron 5022371-5022502 asmbl_37563 scaffold_28 + retained_intron 5022371-5022502 asmbl_37564,asmbl_37565 // Exon Skipping and Retention # skipped_exon 5017926-5018141 (orient:+) max_ev_support = 2 # retained_exon 5018011-5018060 (orient:+) max_ev_support = 1 scaffold_28 + retained_exons 5018011-5018060 asmbl_37565 scaffold_28 + intron_skips_exon 5017926-5018141 asmbl_37563,asmbl_37564 // Retained and Spliced Intron # retained_intron 5024052-5024125 (orient:+) max_ev_support = 3 # spliced_intron 5024052-5024125 (orient:+) max_ev_support = 2 scaffold_28 + intron 5024052-5024125 asmbl_37563,asmbl_37564 scaffold_28 + retained_intron 5024052-5024125 asmbl_37566 // Retained and Spliced Intron # retained_intron 5024248-5024400 (orient:+) max_ev_support = 3 # spliced_intron 5024248-5024400 (orient:+) max_ev_support = 2 scaffold_28 + intron 5024248-5024400 asmbl_37563,asmbl_37564 scaffold_28 + retained_intron 5024248-5024400 asmbl_37566 // Exon Skipping and Retention # skipped_exon 5390808-5391169 (orient:+) max_ev_support = 2 # retained_exon 5391043-5391083 (orient:+) max_ev_support = 3 scaffold_28 + retained_exons 5391043-5391083 asmbl_37583,asmbl_37588 scaffold_28 + intron_skips_exon 5390808-5391169 asmbl_37586 // Exon Skipping and Retention # skipped_exon 5390808-5391483 (orient:+) max_ev_support = 2 # retained_exon 5391043-5391381 (orient:+) max_ev_support = 3 scaffold_28 + retained_exons 5391043-5391083,5391170-5391381 asmbl_37583,asmbl_37588 scaffold_28 + intron_skips_exon 5390808-5391483 asmbl_37585,asmbl_37587 // Retained and Spliced Intron # retained_intron 5390808-5391042 (orient:+) max_ev_support = 3 # spliced_intron 5390808-5391042 (orient:+) max_ev_support = 3 scaffold_28 + intron 5390808-5391042 asmbl_37583,asmbl_37588,asmbl_37589 scaffold_28 + retained_intron 5390808-5391042 asmbl_37584 // Retained and Spliced Intron # retained_intron 5390808-5391169 (orient:+) max_ev_support = 3 # spliced_intron 5390808-5391169 (orient:+) max_ev_support = 2 scaffold_28 + intron 5390808-5391169 asmbl_37586 scaffold_28 + retained_intron 5390808-5391169 asmbl_37584 // Retained and Spliced Intron # retained_intron 5390808-5391483 (orient:+) max_ev_support = 3 # spliced_intron 5390808-5391483 (orient:+) max_ev_support = 2 scaffold_28 + intron 5390808-5391483 asmbl_37585,asmbl_37587 scaffold_28 + retained_intron 5390808-5391483 asmbl_37584 // Retained and Spliced Intron # retained_intron 5391084-5391169 (orient:+) max_ev_support = 3 # spliced_intron 5391084-5391169 (orient:+) max_ev_support = 3 scaffold_28 + intron 5391084-5391169 asmbl_37583,asmbl_37588 scaffold_28 + retained_intron 5391084-5391169 asmbl_37584,asmbl_37589 // Retained and Spliced Intron # retained_intron 5391382-5391483 (orient:+) max_ev_support = 1 # spliced_intron 5391382-5391483 (orient:+) max_ev_support = 3 scaffold_28 + intron 5391382-5391483 asmbl_37583,asmbl_37586,asmbl_37588 scaffold_28 + retained_intron 5391382-5391483 asmbl_37584 // Retained and Spliced Intron # retained_intron 5755532-5756003 (orient:+) max_ev_support = 2 # spliced_intron 5755532-5756003 (orient:+) max_ev_support = 3 scaffold_28 + intron 5755532-5756003 asmbl_37603 scaffold_28 + retained_intron 5755532-5756003 asmbl_37604 // Retained and Spliced Intron # retained_intron 5755662-5756003 (orient:+) max_ev_support = 2 # spliced_intron 5755662-5756003 (orient:+) max_ev_support = 3 scaffold_28 + intron 5755662-5756003 asmbl_37602 scaffold_28 + retained_intron 5755662-5756003 asmbl_37604 // Retained and Spliced Intron # retained_intron 7156851-7156991 (orient:+) max_ev_support = 2 # spliced_intron 7156851-7156991 (orient:+) max_ev_support = 2 scaffold_28 + intron 7156851-7156991 asmbl_37633,asmbl_37634,asmbl_37635,asmbl_37637 scaffold_28 + retained_intron 7156851-7156991 asmbl_37636 // Exon Skipping and Retention # skipped_exon 7228838-7230748 (orient:+) max_ev_support = 1 # retained_exon 7229350-7229926 (orient:+) max_ev_support = 2 scaffold_28 + retained_exons 7229350-7229487,7229758-7229926 asmbl_37638 scaffold_28 + intron_skips_exon 7228838-7230748 asmbl_37639 // Retained and Spliced Intron # retained_intron 7234548-7234723 (orient:+) max_ev_support = 3 # spliced_intron 7234548-7234723 (orient:+) max_ev_support = 1 scaffold_28 + intron 7234548-7234723 asmbl_37644 scaffold_28 + retained_intron 7234548-7234723 asmbl_37642 // Retained and Spliced Intron # retained_intron 7234548-7235090 (orient:+) max_ev_support = 4 # spliced_intron 7234548-7235090 (orient:+) max_ev_support = 2 scaffold_28 + intron 7234548-7235090 asmbl_37643 scaffold_28 + retained_intron 7234548-7235090 asmbl_37642 // Retained and Spliced Intron # retained_intron 7234745-7235090 (orient:+) max_ev_support = 4 # spliced_intron 7234745-7235090 (orient:+) max_ev_support = 1 scaffold_28 + intron 7234745-7235090 asmbl_37644 scaffold_28 + retained_intron 7234745-7235090 asmbl_37642 // Exon Skipping and Retention # skipped_exon 7233835-7235090 (orient:+) max_ev_support = 1 # retained_exon 7234355-7234547 (orient:+) max_ev_support = 2 scaffold_28 + retained_exons 7234355-7234547 asmbl_37643 scaffold_28 + intron_skips_exon 7233835-7235090 asmbl_37645 // Exon Skipping and Retention # skipped_exon 7234548-7235090 (orient:+) max_ev_support = 2 # retained_exon 7234724-7234744 (orient:+) max_ev_support = 1 scaffold_28 + retained_exons 7234724-7234744 asmbl_37644 scaffold_28 + intron_skips_exon 7234548-7235090 asmbl_37643 // Exon Skipping and Retention # skipped_exon 7237911-7238320 (orient:+) max_ev_support = 2 # retained_exon 7238011-7238146 (orient:+) max_ev_support = 2 scaffold_28 + retained_exons 7238011-7238146 asmbl_37646 scaffold_28 + intron_skips_exon 7237911-7238320 asmbl_37647 // Retained and Spliced Intron # retained_intron 7359508-7359739 (orient:+) max_ev_support = 2 # spliced_intron 7359508-7359739 (orient:+) max_ev_support = 3 scaffold_28 + intron 7359508-7359739 asmbl_37666 scaffold_28 + retained_intron 7359508-7359739 asmbl_37668 // Retained and Spliced Intron # retained_intron 7438245-7438344 (orient:+) max_ev_support = 2 # spliced_intron 7438245-7438344 (orient:+) max_ev_support = 2 scaffold_28 + intron 7438245-7438344 asmbl_37680 scaffold_28 + retained_intron 7438245-7438344 asmbl_37679 // Exon Skipping and Retention # skipped_exon 7490219-7493147 (orient:+) max_ev_support = 2 # retained_exon 7491067-7491099 (orient:+) max_ev_support = 2 scaffold_28 + retained_exons 7491067-7491099 asmbl_37685 scaffold_28 + intron_skips_exon 7490219-7493147 asmbl_37686 // Retained and Spliced Intron # retained_intron 7528910-7529100 (orient:+) max_ev_support = 1 # spliced_intron 7528910-7529100 (orient:+) max_ev_support = 2 scaffold_28 + intron 7528910-7529100 asmbl_37689,asmbl_37692 scaffold_28 + retained_intron 7528910-7529100 asmbl_37691 // Retained and Spliced Intron # retained_intron 7720311-7721514 (orient:+) max_ev_support = 4 # spliced_intron 7720311-7721514 (orient:+) max_ev_support = 2 scaffold_28 + intron 7720311-7721514 asmbl_37703,asmbl_37706 scaffold_28 + retained_intron 7720311-7721514 asmbl_37704 // Retained and Spliced Intron # retained_intron 7720499-7721514 (orient:+) max_ev_support = 4 # spliced_intron 7720499-7721514 (orient:+) max_ev_support = 1 scaffold_28 + intron 7720499-7721514 asmbl_37707 scaffold_28 + retained_intron 7720499-7721514 asmbl_37704 // Retained and Spliced Intron # retained_intron 7721599-7722019 (orient:+) max_ev_support = 1 # spliced_intron 7721599-7722019 (orient:+) max_ev_support = 2 scaffold_28 + intron 7721599-7722019 asmbl_37703,asmbl_37704,asmbl_37706,asmbl_37707 scaffold_28 + retained_intron 7721599-7722019 asmbl_37708 // Retained and Spliced Intron # retained_intron 8030132-8030254 (orient:+) max_ev_support = 1 # spliced_intron 8030132-8030254 (orient:+) max_ev_support = 1 scaffold_28 + intron 8030132-8030254 asmbl_37716 scaffold_28 + retained_intron 8030132-8030254 asmbl_37718 // Retained and Spliced Intron # retained_intron 8051811-8052141 (orient:+) max_ev_support = 2 # spliced_intron 8051811-8052141 (orient:+) max_ev_support = 3 scaffold_28 + intron 8051811-8052141 asmbl_37719 scaffold_28 + retained_intron 8051811-8052141 asmbl_37720 // Retained and Spliced Intron # retained_intron 8276719-8276800 (orient:+) max_ev_support = 2 # spliced_intron 8276719-8276800 (orient:+) max_ev_support = 1 scaffold_28 + intron 8276719-8276800 asmbl_37738 scaffold_28 + retained_intron 8276719-8276800 asmbl_37737 // Exon Skipping and Retention # skipped_exon 8412619-8414892 (orient:+) max_ev_support = 2 # retained_exon 8413200-8413268 (orient:+) max_ev_support = 3 scaffold_28 + retained_exons 8413200-8413268 asmbl_37745 scaffold_28 + intron_skips_exon 8412619-8414892 asmbl_37746 // Exon Skipping and Retention # skipped_exon 8412619-8414931 (orient:+) max_ev_support = 1 # retained_exon 8413200-8413268 (orient:+) max_ev_support = 3 scaffold_28 + retained_exons 8413200-8413268 asmbl_37745 scaffold_28 + intron_skips_exon 8412619-8414931 asmbl_37747 // Retained and Spliced Intron # retained_intron 8422122-8422142 (orient:+) max_ev_support = 3 # spliced_intron 8422122-8422142 (orient:+) max_ev_support = 1 scaffold_28 + intron 8422122-8422142 asmbl_37749 scaffold_28 + retained_intron 8422122-8422142 asmbl_37748 // Retained and Spliced Intron # retained_intron 8481657-8481677 (orient:+) max_ev_support = 2 # spliced_intron 8481657-8481677 (orient:+) max_ev_support = 1 scaffold_28 + intron 8481657-8481677 asmbl_37754 scaffold_28 + retained_intron 8481657-8481677 asmbl_37753 // Exon Skipping and Retention # skipped_exon 9268494-9269691 (orient:+) max_ev_support = 3 # retained_exon 9268985-9269134 (orient:+) max_ev_support = 1 scaffold_28 + retained_exons 9268985-9269134 asmbl_37780 scaffold_28 + intron_skips_exon 9268494-9269691 asmbl_37778 // Retained and Spliced Intron # retained_intron 9641239-9641325 (orient:+) max_ev_support = 1 # spliced_intron 9641239-9641325 (orient:+) max_ev_support = 3 scaffold_28 + intron 9641239-9641325 asmbl_37797 scaffold_28 + retained_intron 9641239-9641325 asmbl_37798 // Retained and Spliced Intron # retained_intron 9681871-9681946 (orient:+) max_ev_support = 1 # spliced_intron 9681871-9681946 (orient:+) max_ev_support = 2 scaffold_28 + intron 9681871-9681946 asmbl_37801,asmbl_37803 scaffold_28 + retained_intron 9681871-9681946 asmbl_37802 // Retained and Spliced Intron # retained_intron 9808981-9809004 (orient:+) max_ev_support = 3 # spliced_intron 9808981-9809004 (orient:+) max_ev_support = 1 scaffold_28 + intron 9808981-9809004 asmbl_37811 scaffold_28 + retained_intron 9808981-9809004 asmbl_37810 // Exon Skipping and Retention # skipped_exon 56889-58087 (orient:-) max_ev_support = 1 # retained_exon 57850-57968 (orient:-) max_ev_support = 2 scaffold_28 - retained_exons 57850-57968 asmbl_37881,asmbl_37886,asmbl_37887 scaffold_28 - intron_skips_exon 56889-58087 asmbl_37885 // Retained and Spliced Intron # retained_intron 58885-58965 (orient:-) max_ev_support = 2 # spliced_intron 58885-58965 (orient:-) max_ev_support = 2 scaffold_28 - intron 58885-58965 asmbl_37881,asmbl_37885,asmbl_37886,asmbl_37887 scaffold_28 - retained_intron 58885-58965 asmbl_37884 // Retained and Spliced Intron # retained_intron 56228-56300 (orient:-) max_ev_support = 1 # spliced_intron 56228-56300 (orient:-) max_ev_support = 2 scaffold_28 - intron 56228-56300 asmbl_37881,asmbl_37885 scaffold_28 - retained_intron 56228-56300 asmbl_37886 // Retained and Spliced Intron # retained_intron 107460-108782 (orient:-) max_ev_support = 1 # spliced_intron 107460-108782 (orient:-) max_ev_support = 2 scaffold_28 - intron 107460-108782 asmbl_37891 scaffold_28 - retained_intron 107460-108782 asmbl_37892,asmbl_37893,asmbl_37894 // Retained and Spliced Intron # retained_intron 106950-107373 (orient:-) max_ev_support = 1 # spliced_intron 106950-107373 (orient:-) max_ev_support = 2 scaffold_28 - intron 106950-107373 asmbl_37891,asmbl_37892 scaffold_28 - retained_intron 106950-107373 asmbl_37893,asmbl_37894 // Retained and Spliced Intron # retained_intron 105779-105881 (orient:-) max_ev_support = 1 # spliced_intron 105779-105881 (orient:-) max_ev_support = 2 scaffold_28 - intron 105779-105881 asmbl_37891,asmbl_37892,asmbl_37893 scaffold_28 - retained_intron 105779-105881 asmbl_37894 // Retained and Spliced Intron # retained_intron 221848-222198 (orient:-) max_ev_support = 1 # spliced_intron 221848-222198 (orient:-) max_ev_support = 1 scaffold_28 - intron 221848-222198 asmbl_37900 scaffold_28 - retained_intron 221848-222198 asmbl_37901,asmbl_37902 // Retained and Spliced Intron # retained_intron 226675-226779 (orient:-) max_ev_support = 1 # spliced_intron 226675-226779 (orient:-) max_ev_support = 1 scaffold_28 - intron 226675-226779 asmbl_37900,asmbl_37901 scaffold_28 - retained_intron 226675-226779 asmbl_37902 // Retained and Spliced Intron # retained_intron 535489-536046 (orient:-) max_ev_support = 5 # spliced_intron 535489-536046 (orient:-) max_ev_support = 2 scaffold_28 - intron 535489-536046 asmbl_37907 scaffold_28 - retained_intron 535489-536046 asmbl_37906 // Exon Skipping and Retention # skipped_exon 538019-538931 (orient:-) max_ev_support = 1 # retained_exon 538460-538587 (orient:-) max_ev_support = 2 scaffold_28 - retained_exons 538460-538587 asmbl_37909,asmbl_37910,asmbl_37911 scaffold_28 - intron_skips_exon 538019-538931 asmbl_37912 // Exon Skipping and Retention # skipped_exon 539383-539895 (orient:-) max_ev_support = 1 # retained_exon 539546-539623 (orient:-) max_ev_support = 2 scaffold_28 - retained_exons 539546-539623 asmbl_37909 scaffold_28 - intron_skips_exon 539383-539895 asmbl_37910,asmbl_37911,asmbl_37912 // Retained and Spliced Intron # retained_intron 575733-575994 (orient:-) max_ev_support = 2 # spliced_intron 575733-575994 (orient:-) max_ev_support = 2 scaffold_28 - intron 575733-575994 asmbl_37916,asmbl_37919 scaffold_28 - retained_intron 575733-575994 asmbl_37917 // Exon Skipping and Retention # skipped_exon 1008096-1008835 (orient:-) max_ev_support = 1 # retained_exon 1008211-1008357 (orient:-) max_ev_support = 2 scaffold_28 - retained_exons 1008211-1008357 asmbl_37957 scaffold_28 - intron_skips_exon 1008096-1008835 asmbl_37958,asmbl_37959 // Retained and Spliced Intron # retained_intron 1104760-1104779 (orient:-) max_ev_support = 1 # spliced_intron 1104760-1104779 (orient:-) max_ev_support = 2 scaffold_28 - intron 1104760-1104779 asmbl_37965 scaffold_28 - retained_intron 1104760-1104779 asmbl_37966 // Exon Skipping and Retention # skipped_exon 1431687-1434129 (orient:-) max_ev_support = 2 # retained_exon 1432997-1433103 (orient:-) max_ev_support = 2 scaffold_28 - retained_exons 1432997-1433103 asmbl_37990 scaffold_28 - intron_skips_exon 1431687-1434129 asmbl_37989,asmbl_37991 // Exon Skipping and Retention # skipped_exon 1434222-1435417 (orient:-) max_ev_support = 2 # retained_exon 1434807-1434860 (orient:-) max_ev_support = 2 scaffold_28 - retained_exons 1434807-1434860 asmbl_37990,asmbl_37991 scaffold_28 - intron_skips_exon 1434222-1435417 asmbl_37989 // Retained and Spliced Intron # retained_intron 2265643-2266048 (orient:-) max_ev_support = 1 # spliced_intron 2265643-2266048 (orient:-) max_ev_support = 2 scaffold_28 - intron 2265643-2266048 asmbl_38023,asmbl_38024,asmbl_38025,asmbl_38030 scaffold_28 - retained_intron 2265643-2266048 asmbl_38029 // Retained and Spliced Intron # retained_intron 2303296-2303372 (orient:-) max_ev_support = 1 # spliced_intron 2303296-2303372 (orient:-) max_ev_support = 1 scaffold_28 - intron 2303296-2303372 asmbl_38037 scaffold_28 - retained_intron 2303296-2303372 asmbl_38036 // Retained and Spliced Intron # retained_intron 2729367-2729694 (orient:-) max_ev_support = 1 # spliced_intron 2729367-2729694 (orient:-) max_ev_support = 2 scaffold_28 - intron 2729367-2729694 asmbl_38081 scaffold_28 - retained_intron 2729367-2729694 asmbl_38082 // Retained and Spliced Intron # retained_intron 2810466-2811309 (orient:-) max_ev_support = 1 # spliced_intron 2810466-2811309 (orient:-) max_ev_support = 1 scaffold_28 - intron 2810466-2811309 asmbl_38088,asmbl_38092 scaffold_28 - retained_intron 2810466-2811309 asmbl_38086,asmbl_38089,asmbl_38090,asmbl_38091 // Exon Skipping and Retention # skipped_exon 2810466-2811511 (orient:-) max_ev_support = 1 # retained_exon 2811310-2811348 (orient:-) max_ev_support = 1 scaffold_28 - retained_exons 2811310-2811348 asmbl_38088,asmbl_38092 scaffold_28 - intron_skips_exon 2810466-2811511 asmbl_38087,asmbl_38093 // Retained and Spliced Intron # retained_intron 2808976-2809341 (orient:-) max_ev_support = 1 # spliced_intron 2808976-2809341 (orient:-) max_ev_support = 1 scaffold_28 - intron 2808976-2809341 asmbl_38086,asmbl_38087,asmbl_38088,asmbl_38090,asmbl_38091 scaffold_28 - retained_intron 2808976-2809341 asmbl_38089,asmbl_38092,asmbl_38093 // Retained and Spliced Intron # retained_intron 2810466-2811511 (orient:-) max_ev_support = 1 # spliced_intron 2810466-2811511 (orient:-) max_ev_support = 1 scaffold_28 - intron 2810466-2811511 asmbl_38087,asmbl_38093 scaffold_28 - retained_intron 2810466-2811511 asmbl_38089,asmbl_38090,asmbl_38091 // Retained and Spliced Intron # retained_intron 2811349-2811511 (orient:-) max_ev_support = 1 # spliced_intron 2811349-2811511 (orient:-) max_ev_support = 1 scaffold_28 - intron 2811349-2811511 asmbl_38086,asmbl_38088,asmbl_38092 scaffold_28 - retained_intron 2811349-2811511 asmbl_38089,asmbl_38090,asmbl_38091 // Retained and Spliced Intron # retained_intron 2811643-2811903 (orient:-) max_ev_support = 1 # spliced_intron 2811643-2811903 (orient:-) max_ev_support = 1 scaffold_28 - intron 2811643-2811903 asmbl_38086,asmbl_38087,asmbl_38088,asmbl_38092,asmbl_38093 scaffold_28 - retained_intron 2811643-2811903 asmbl_38091 // Retained and Spliced Intron # retained_intron 3037644-3038209 (orient:-) max_ev_support = 3 # spliced_intron 3037644-3038209 (orient:-) max_ev_support = 1 scaffold_28 - intron 3037644-3038209 asmbl_38128 scaffold_28 - retained_intron 3037644-3038209 asmbl_38127 // Exon Skipping and Retention # skipped_exon 3117227-3117613 (orient:-) max_ev_support = 1 # retained_exon 3117420-3117491 (orient:-) max_ev_support = 2 scaffold_28 - retained_exons 3117420-3117491 asmbl_38132 scaffold_28 - intron_skips_exon 3117227-3117613 asmbl_38133 // Retained and Spliced Intron # retained_intron 3175623-3175744 (orient:-) max_ev_support = 1 # spliced_intron 3175623-3175744 (orient:-) max_ev_support = 2 scaffold_28 - intron 3175623-3175744 asmbl_38135 scaffold_28 - retained_intron 3175623-3175744 asmbl_38136 // Retained and Spliced Intron # retained_intron 3523207-3523344 (orient:-) max_ev_support = 2 # spliced_intron 3523207-3523344 (orient:-) max_ev_support = 1 scaffold_28 - intron 3523207-3523344 asmbl_38154 scaffold_28 - retained_intron 3523207-3523344 asmbl_38153 // Retained and Spliced Intron # retained_intron 3730685-3731676 (orient:-) max_ev_support = 2 # spliced_intron 3730685-3731676 (orient:-) max_ev_support = 1 scaffold_28 - intron 3730685-3731676 asmbl_38162,asmbl_38163,asmbl_38169,asmbl_38170 scaffold_28 - retained_intron 3730685-3731676 asmbl_38161,asmbl_38164,asmbl_38165,asmbl_38166,asmbl_38168,asmbl_38171 // Exon Skipping and Retention # skipped_exon 3731759-3732710 (orient:-) max_ev_support = 1 # retained_exon 3732310-3732446 (orient:-) max_ev_support = 2 scaffold_28 - retained_exons 3732310-3732446 asmbl_38161,asmbl_38162,asmbl_38163,asmbl_38164,asmbl_38165,asmbl_38169,asmbl_38170 scaffold_28 - intron_skips_exon 3731759-3732710 asmbl_38166 // Exon Skipping and Retention # skipped_exon 3740466-3740968 (orient:-) max_ev_support = 1 # retained_exon 3740835-3740885 (orient:-) max_ev_support = 1 scaffold_28 - retained_exons 3740835-3740885 asmbl_38161,asmbl_38162,asmbl_38163,asmbl_38164,asmbl_38165,asmbl_38166,asmbl_38169 scaffold_28 - intron_skips_exon 3740466-3740968 asmbl_38171 // Retained and Spliced Intron # retained_intron 3734861-3735230 (orient:-) max_ev_support = 1 # spliced_intron 3734861-3735230 (orient:-) max_ev_support = 1 scaffold_28 - intron 3734861-3735230 asmbl_38169,asmbl_38171 scaffold_28 - retained_intron 3734861-3735230 asmbl_38170 // Retained and Spliced Intron # retained_intron 4194207-4194283 (orient:-) max_ev_support = 1 # spliced_intron 4194207-4194283 (orient:-) max_ev_support = 2 scaffold_28 - intron 4194207-4194283 asmbl_38199 scaffold_28 - retained_intron 4194207-4194283 asmbl_38200 // Retained and Spliced Intron # retained_intron 4255504-4255598 (orient:-) max_ev_support = 1 # spliced_intron 4255504-4255598 (orient:-) max_ev_support = 2 scaffold_28 - intron 4255504-4255598 asmbl_38201,asmbl_38203 scaffold_28 - retained_intron 4255504-4255598 asmbl_38202 // Retained and Spliced Intron # retained_intron 4255778-4255887 (orient:-) max_ev_support = 1 # spliced_intron 4255778-4255887 (orient:-) max_ev_support = 2 scaffold_28 - intron 4255778-4255887 asmbl_38201,asmbl_38202 scaffold_28 - retained_intron 4255778-4255887 asmbl_38203 // Retained and Spliced Intron # retained_intron 4440911-4440975 (orient:-) max_ev_support = 2 # spliced_intron 4440911-4440975 (orient:-) max_ev_support = 1 scaffold_28 - intron 4440911-4440975 asmbl_38209 scaffold_28 - retained_intron 4440911-4440975 asmbl_38208 // Exon Skipping and Retention # skipped_exon 4558423-4559051 (orient:-) max_ev_support = 2 # retained_exon 4558738-4558973 (orient:-) max_ev_support = 1 scaffold_28 - retained_exons 4558738-4558973 asmbl_38214 scaffold_28 - intron_skips_exon 4558423-4559051 asmbl_38213 // Retained and Spliced Intron # retained_intron 4562120-4562213 (orient:-) max_ev_support = 3 # spliced_intron 4562120-4562213 (orient:-) max_ev_support = 3 scaffold_28 - intron 4562120-4562213 asmbl_38215,asmbl_38217 scaffold_28 - retained_intron 4562120-4562213 asmbl_38216 // Retained and Spliced Intron # retained_intron 4875335-4875549 (orient:-) max_ev_support = 2 # spliced_intron 4875335-4875549 (orient:-) max_ev_support = 3 scaffold_28 - intron 4875335-4875549 asmbl_38227,asmbl_38228 scaffold_28 - retained_intron 4875335-4875549 asmbl_38229 // Retained and Spliced Intron # retained_intron 5228162-5228266 (orient:-) max_ev_support = 1 # spliced_intron 5228162-5228266 (orient:-) max_ev_support = 2 scaffold_28 - intron 5228162-5228266 asmbl_38260,asmbl_38263 scaffold_28 - retained_intron 5228162-5228266 asmbl_38258 // Retained and Spliced Intron # retained_intron 5228162-5228281 (orient:-) max_ev_support = 1 # spliced_intron 5228162-5228281 (orient:-) max_ev_support = 1 scaffold_28 - intron 5228162-5228281 asmbl_38262,asmbl_38264 scaffold_28 - retained_intron 5228162-5228281 asmbl_38258 // Retained and Spliced Intron # retained_intron 5230739-5230823 (orient:-) max_ev_support = 1 # spliced_intron 5230739-5230823 (orient:-) max_ev_support = 2 scaffold_28 - intron 5230739-5230823 asmbl_38261 scaffold_28 - retained_intron 5230739-5230823 asmbl_38264 // Retained and Spliced Intron # retained_intron 5238035-5238122 (orient:-) max_ev_support = 2 # spliced_intron 5238035-5238122 (orient:-) max_ev_support = 2 scaffold_28 - intron 5238035-5238122 asmbl_38268,asmbl_38270,asmbl_38273 scaffold_28 - retained_intron 5238035-5238122 asmbl_38267,asmbl_38272 // Retained and Spliced Intron # retained_intron 5234854-5235055 (orient:-) max_ev_support = 2 # spliced_intron 5234854-5235055 (orient:-) max_ev_support = 2 scaffold_28 - intron 5234854-5235055 asmbl_38267,asmbl_38268,asmbl_38271,asmbl_38272,asmbl_38273,asmbl_38274 scaffold_28 - retained_intron 5234854-5235055 asmbl_38269 // Retained and Spliced Intron # retained_intron 5237564-5237680 (orient:-) max_ev_support = 1 # spliced_intron 5237564-5237680 (orient:-) max_ev_support = 2 scaffold_28 - intron 5237564-5237680 asmbl_38267,asmbl_38268,asmbl_38272,asmbl_38273 scaffold_28 - retained_intron 5237564-5237680 asmbl_38271,asmbl_38274 // Retained and Spliced Intron # retained_intron 5233036-5233314 (orient:-) max_ev_support = 1 # spliced_intron 5233036-5233314 (orient:-) max_ev_support = 2 scaffold_28 - intron 5233036-5233314 asmbl_38267,asmbl_38268,asmbl_38271,asmbl_38272 scaffold_28 - retained_intron 5233036-5233314 asmbl_38273,asmbl_38274 // Retained and Spliced Intron # retained_intron 5249878-5250166 (orient:-) max_ev_support = 2 # spliced_intron 5249878-5250166 (orient:-) max_ev_support = 2 scaffold_28 - intron 5249878-5250166 asmbl_38276 scaffold_28 - retained_intron 5249878-5250166 asmbl_38275 // Retained and Spliced Intron # retained_intron 5358747-5358813 (orient:-) max_ev_support = 1 # spliced_intron 5358747-5358813 (orient:-) max_ev_support = 2 scaffold_28 - intron 5358747-5358813 asmbl_38286 scaffold_28 - retained_intron 5358747-5358813 asmbl_38287 // Retained and Spliced Intron # retained_intron 5358871-5358960 (orient:-) max_ev_support = 1 # spliced_intron 5358871-5358960 (orient:-) max_ev_support = 2 scaffold_28 - intron 5358871-5358960 asmbl_38286 scaffold_28 - retained_intron 5358871-5358960 asmbl_38287 // Exon Skipping and Retention # skipped_exon 5361539-5362274 (orient:-) max_ev_support = 1 # retained_exon 5361810-5361968 (orient:-) max_ev_support = 3 scaffold_28 - retained_exons 5361810-5361968 asmbl_38288 scaffold_28 - intron_skips_exon 5361539-5362274 asmbl_38289 // Retained and Spliced Intron # retained_intron 5611216-5611353 (orient:-) max_ev_support = 2 # spliced_intron 5611216-5611353 (orient:-) max_ev_support = 3 scaffold_28 - intron 5611216-5611353 asmbl_38301,asmbl_38304 scaffold_28 - retained_intron 5611216-5611353 asmbl_38298,asmbl_38300,asmbl_38302,asmbl_38303 // Retained and Spliced Intron # retained_intron 5611216-5611372 (orient:-) max_ev_support = 2 # spliced_intron 5611216-5611372 (orient:-) max_ev_support = 3 scaffold_28 - intron 5611216-5611372 asmbl_38299 scaffold_28 - retained_intron 5611216-5611372 asmbl_38298,asmbl_38300,asmbl_38302,asmbl_38303 // Retained and Spliced Intron # retained_intron 5611496-5611679 (orient:-) max_ev_support = 3 # spliced_intron 5611496-5611679 (orient:-) max_ev_support = 3 scaffold_28 - intron 5611496-5611679 asmbl_38301,asmbl_38302 scaffold_28 - retained_intron 5611496-5611679 asmbl_38298,asmbl_38299,asmbl_38300,asmbl_38303,asmbl_38304 // Retained and Spliced Intron # retained_intron 5611858-5612155 (orient:-) max_ev_support = 3 # spliced_intron 5611858-5612155 (orient:-) max_ev_support = 3 scaffold_28 - intron 5611858-5612155 asmbl_38300 scaffold_28 - retained_intron 5611858-5612155 asmbl_38298 // Retained and Spliced Intron # retained_intron 5638196-5638636 (orient:-) max_ev_support = 1 # spliced_intron 5638196-5638636 (orient:-) max_ev_support = 3 scaffold_28 - intron 5638196-5638636 asmbl_38306,asmbl_38307,asmbl_38311,asmbl_38313 scaffold_28 - retained_intron 5638196-5638636 asmbl_38309,asmbl_38310 // Retained and Spliced Intron # retained_intron 5735192-5735278 (orient:-) max_ev_support = 2 # spliced_intron 5735192-5735278 (orient:-) max_ev_support = 3 scaffold_28 - intron 5735192-5735278 asmbl_38318 scaffold_28 - retained_intron 5735192-5735278 asmbl_38319 // Retained and Spliced Intron # retained_intron 6515478-6515563 (orient:-) max_ev_support = 1 # spliced_intron 6515478-6515563 (orient:-) max_ev_support = 1 scaffold_28 - intron 6515478-6515563 asmbl_38350 scaffold_28 - retained_intron 6515478-6515563 asmbl_38348,asmbl_38349 // Retained and Spliced Intron # retained_intron 6515507-6515534 (orient:-) max_ev_support = 1 # spliced_intron 6515507-6515534 (orient:-) max_ev_support = 1 scaffold_28 - intron 6515507-6515534 asmbl_38347 scaffold_28 - retained_intron 6515507-6515534 asmbl_38348,asmbl_38349 // Exon Skipping and Retention # skipped_exon 6546537-6547929 (orient:-) max_ev_support = 1 # retained_exon 6546833-6546895 (orient:-) max_ev_support = 1 scaffold_28 - retained_exons 6546833-6546895 asmbl_38353 scaffold_28 - intron_skips_exon 6546537-6547929 asmbl_38356 // Exon Skipping and Retention # skipped_exon 6546896-6548299 (orient:-) max_ev_support = 1 # retained_exon 6547487-6547549 (orient:-) max_ev_support = 1 scaffold_28 - retained_exons 6547487-6547549 asmbl_38354 scaffold_28 - intron_skips_exon 6546896-6548299 asmbl_38353 // Exon Skipping and Retention # skipped_exon 6547550-6548299 (orient:-) max_ev_support = 1 # retained_exon 6547930-6548040 (orient:-) max_ev_support = 1 scaffold_28 - retained_exons 6547930-6548040 asmbl_38356,asmbl_38355 scaffold_28 - intron_skips_exon 6547550-6548299 asmbl_38354 // Retained and Spliced Intron # retained_intron 6557835-6557938 (orient:-) max_ev_support = 1 # spliced_intron 6557835-6557938 (orient:-) max_ev_support = 2 scaffold_28 - intron 6557835-6557938 asmbl_38360 scaffold_28 - retained_intron 6557835-6557938 asmbl_38361,asmbl_38362 // Retained and Spliced Intron # retained_intron 6926010-6926670 (orient:-) max_ev_support = 3 # spliced_intron 6926010-6926670 (orient:-) max_ev_support = 2 scaffold_28 - intron 6926010-6926670 asmbl_38365 scaffold_28 - retained_intron 6926010-6926670 asmbl_38364 // Retained and Spliced Intron # retained_intron 6926103-6926670 (orient:-) max_ev_support = 3 # spliced_intron 6926103-6926670 (orient:-) max_ev_support = 1 scaffold_28 - intron 6926103-6926670 asmbl_38366 scaffold_28 - retained_intron 6926103-6926670 asmbl_38364 // Retained and Spliced Intron # retained_intron 7305588-7306228 (orient:-) max_ev_support = 1 # spliced_intron 7305588-7306228 (orient:-) max_ev_support = 3 scaffold_28 - intron 7305588-7306228 asmbl_38391 scaffold_28 - retained_intron 7305588-7306228 asmbl_38393 // Retained and Spliced Intron # retained_intron 7421600-7421706 (orient:-) max_ev_support = 1 # spliced_intron 7421600-7421706 (orient:-) max_ev_support = 2 scaffold_28 - intron 7421600-7421706 asmbl_38399 scaffold_28 - retained_intron 7421600-7421706 asmbl_38400 // Retained and Spliced Intron # retained_intron 7421777-7421872 (orient:-) max_ev_support = 1 # spliced_intron 7421777-7421872 (orient:-) max_ev_support = 2 scaffold_28 - intron 7421777-7421872 asmbl_38399 scaffold_28 - retained_intron 7421777-7421872 asmbl_38400 // Exon Skipping and Retention # skipped_exon 7746453-7747360 (orient:-) max_ev_support = 1 # retained_exon 7746842-7747034 (orient:-) max_ev_support = 2 scaffold_28 - retained_exons 7746842-7747034 asmbl_38407 scaffold_28 - intron_skips_exon 7746453-7747360 asmbl_38410 // Exon Skipping and Retention # skipped_exon 7747035-7748172 (orient:-) max_ev_support = 2 # retained_exon 7747361-7747553 (orient:-) max_ev_support = 1 scaffold_28 - retained_exons 7747361-7747553 asmbl_38410 scaffold_28 - intron_skips_exon 7747035-7748172 asmbl_38407 // Exon Skipping and Retention # skipped_exon 7880365-7880912 (orient:-) max_ev_support = 2 # retained_exon 7880680-7880694 (orient:-) max_ev_support = 1 scaffold_28 - retained_exons 7880680-7880694 asmbl_38429 scaffold_28 - intron_skips_exon 7880365-7880912 asmbl_38427 // Retained and Spliced Intron # retained_intron 9115472-9115873 (orient:-) max_ev_support = 2 # spliced_intron 9115472-9115873 (orient:-) max_ev_support = 2 scaffold_28 - intron 9115472-9115873 asmbl_38490 scaffold_28 - retained_intron 9115472-9115873 asmbl_38491,asmbl_38492 // Retained and Spliced Intron # retained_intron 9225871-9225909 (orient:-) max_ev_support = 3 # spliced_intron 9225871-9225909 (orient:-) max_ev_support = 2 scaffold_28 - intron 9225871-9225909 asmbl_38498 scaffold_28 - retained_intron 9225871-9225909 asmbl_38497,asmbl_38499,asmbl_38500 // Retained and Spliced Intron # retained_intron 9225948-9225986 (orient:-) max_ev_support = 3 # spliced_intron 9225948-9225986 (orient:-) max_ev_support = 1 scaffold_28 - intron 9225948-9225986 asmbl_38500 scaffold_28 - retained_intron 9225948-9225986 asmbl_38497,asmbl_38498 // Retained and Spliced Intron # retained_intron 9225948-9226024 (orient:-) max_ev_support = 3 # spliced_intron 9225948-9226024 (orient:-) max_ev_support = 1 scaffold_28 - intron 9225948-9226024 asmbl_38499 scaffold_28 - retained_intron 9225948-9226024 asmbl_38497,asmbl_38498 // Retained and Spliced Intron # retained_intron 9415572-9415730 (orient:-) max_ev_support = 1 # spliced_intron 9415572-9415730 (orient:-) max_ev_support = 2 scaffold_28 - intron 9415572-9415730 asmbl_38508 scaffold_28 - retained_intron 9415572-9415730 asmbl_38510 // Retained and Spliced Intron # retained_intron 9441074-9441164 (orient:-) max_ev_support = 1 # spliced_intron 9441074-9441164 (orient:-) max_ev_support = 1 scaffold_28 - intron 9441074-9441164 asmbl_38515 scaffold_28 - retained_intron 9441074-9441164 asmbl_38514 // Retained and Spliced Intron # retained_intron 9441283-9441479 (orient:-) max_ev_support = 1 # spliced_intron 9441283-9441479 (orient:-) max_ev_support = 1 scaffold_28 - intron 9441283-9441479 asmbl_38515 scaffold_28 - retained_intron 9441283-9441479 asmbl_38514 // Retained and Spliced Intron # retained_intron 1629-1871 (orient:+) max_ev_support = 2 # spliced_intron 1629-1871 (orient:+) max_ev_support = 1 scaffold_285 + intron 1629-1871 asmbl_38623 scaffold_285 + retained_intron 1629-1871 asmbl_38622 // Retained and Spliced Intron # retained_intron 56911-57031 (orient:+) max_ev_support = 3 # spliced_intron 56911-57031 (orient:+) max_ev_support = 1 scaffold_29 + intron 56911-57031 asmbl_38639 scaffold_29 + retained_intron 56911-57031 asmbl_38638 // Exon Skipping and Retention # skipped_exon 743-2048 (orient:-) max_ev_support = 1 # retained_exon 1776-1793 (orient:-) max_ev_support = 1 scaffold_298 - retained_exons 1776-1793 asmbl_38660 scaffold_298 - intron_skips_exon 743-2048 asmbl_38659 // Retained and Spliced Intron # retained_intron 800441-800585 (orient:-) max_ev_support = 3 # spliced_intron 800441-800585 (orient:-) max_ev_support = 2 scaffold_3 - intron 800441-800585 asmbl_38676,asmbl_38677 scaffold_3 - retained_intron 800441-800585 asmbl_38675 // Exon Skipping and Retention # skipped_exon 935338-937335 (orient:-) max_ev_support = 1 # retained_exon 935528-935956 (orient:-) max_ev_support = 1 scaffold_3 - retained_exons 935528-935956 asmbl_38683 scaffold_3 - retained_exons 935528-935721,935830-935956 asmbl_38685 scaffold_3 - intron_skips_exon 935338-937335 asmbl_38686 // Retained and Spliced Intron # retained_intron 935722-935829 (orient:-) max_ev_support = 1 # spliced_intron 935722-935829 (orient:-) max_ev_support = 1 scaffold_3 - intron 935722-935829 asmbl_38684,asmbl_38685 scaffold_3 - retained_intron 935722-935829 asmbl_38683 // Retained and Spliced Intron # retained_intron 935338-935527 (orient:-) max_ev_support = 1 # spliced_intron 935338-935527 (orient:-) max_ev_support = 1 scaffold_3 - intron 935338-935527 asmbl_38683,asmbl_38685 scaffold_3 - retained_intron 935338-935527 asmbl_38684 // Retained and Spliced Intron # retained_intron 1466208-1466551 (orient:-) max_ev_support = 2 # spliced_intron 1466208-1466551 (orient:-) max_ev_support = 2 scaffold_3 - intron 1466208-1466551 asmbl_38708 scaffold_3 - retained_intron 1466208-1466551 asmbl_38707 // Retained and Spliced Intron # retained_intron 1531004-1531031 (orient:-) max_ev_support = 3 # spliced_intron 1531004-1531031 (orient:-) max_ev_support = 1 scaffold_3 - intron 1531004-1531031 asmbl_38714 scaffold_3 - retained_intron 1531004-1531031 asmbl_38713 // Exon Skipping and Retention # skipped_exon 2182686-2183829 (orient:-) max_ev_support = 3 # retained_exon 2183328-2183412 (orient:-) max_ev_support = 2 scaffold_3 - retained_exons 2183328-2183412 asmbl_38733 scaffold_3 - intron_skips_exon 2182686-2183829 asmbl_38732 // Retained and Spliced Intron # retained_intron 3271219-3271370 (orient:-) max_ev_support = 2 # spliced_intron 3271219-3271370 (orient:-) max_ev_support = 1 scaffold_3 - intron 3271219-3271370 asmbl_38764,asmbl_38765,asmbl_38766 scaffold_3 - retained_intron 3271219-3271370 asmbl_38763 // Retained and Spliced Intron # retained_intron 3271219-3272019 (orient:-) max_ev_support = 2 # spliced_intron 3271219-3272019 (orient:-) max_ev_support = 2 scaffold_3 - intron 3271219-3272019 asmbl_38761,asmbl_38767 scaffold_3 - retained_intron 3271219-3272019 asmbl_38763 // Retained and Spliced Intron # retained_intron 3268072-3268486 (orient:-) max_ev_support = 1 # spliced_intron 3268072-3268486 (orient:-) max_ev_support = 2 scaffold_3 - intron 3268072-3268486 asmbl_38760,asmbl_38761,asmbl_38765 scaffold_3 - retained_intron 3268072-3268486 asmbl_38764 // Retained and Spliced Intron # retained_intron 3322168-3322250 (orient:-) max_ev_support = 1 # spliced_intron 3322168-3322250 (orient:-) max_ev_support = 2 scaffold_3 - intron 3322168-3322250 asmbl_38772,asmbl_38774,asmbl_38776 scaffold_3 - retained_intron 3322168-3322250 asmbl_38775 // Retained and Spliced Intron # retained_intron 4267463-4267695 (orient:-) max_ev_support = 5 # spliced_intron 4267463-4267695 (orient:-) max_ev_support = 1 scaffold_3 - intron 4267463-4267695 asmbl_38795 scaffold_3 - retained_intron 4267463-4267695 asmbl_38793,asmbl_38794 // Retained and Spliced Intron # retained_intron 4268351-4268565 (orient:-) max_ev_support = 3 # spliced_intron 4268351-4268565 (orient:-) max_ev_support = 1 scaffold_3 - intron 4268351-4268565 asmbl_38794 scaffold_3 - retained_intron 4268351-4268565 asmbl_38793 // Retained and Spliced Intron # retained_intron 4304531-4304555 (orient:-) max_ev_support = 1 # spliced_intron 4304531-4304555 (orient:-) max_ev_support = 1 scaffold_3 - intron 4304531-4304555 asmbl_38800 scaffold_3 - retained_intron 4304531-4304555 asmbl_38799 // Retained and Spliced Intron # retained_intron 5129399-5129745 (orient:-) max_ev_support = 2 # spliced_intron 5129399-5129745 (orient:-) max_ev_support = 2 scaffold_3 - intron 5129399-5129745 asmbl_38831 scaffold_3 - retained_intron 5129399-5129745 asmbl_38832 // Retained and Spliced Intron # retained_intron 5159772-5159888 (orient:-) max_ev_support = 2 # spliced_intron 5159772-5159888 (orient:-) max_ev_support = 1 scaffold_3 - intron 5159772-5159888 asmbl_38836 scaffold_3 - retained_intron 5159772-5159888 asmbl_38837 // Retained and Spliced Intron # retained_intron 5260258-5260560 (orient:-) max_ev_support = 2 # spliced_intron 5260258-5260560 (orient:-) max_ev_support = 2 scaffold_3 - intron 5260258-5260560 asmbl_38841,asmbl_38842,asmbl_38843 scaffold_3 - retained_intron 5260258-5260560 asmbl_38840 // Retained and Spliced Intron # retained_intron 5529821-5529991 (orient:-) max_ev_support = 1 # spliced_intron 5529821-5529991 (orient:-) max_ev_support = 1 scaffold_3 - intron 5529821-5529991 asmbl_38851 scaffold_3 - retained_intron 5529821-5529991 asmbl_38849 // Retained and Spliced Intron # retained_intron 5774678-5774814 (orient:-) max_ev_support = 3 # spliced_intron 5774678-5774814 (orient:-) max_ev_support = 1 scaffold_3 - intron 5774678-5774814 asmbl_38860,asmbl_38861,asmbl_38865 scaffold_3 - retained_intron 5774678-5774814 asmbl_38859,asmbl_38862 // Retained and Spliced Intron # retained_intron 5774893-5775417 (orient:-) max_ev_support = 4 # spliced_intron 5774893-5775417 (orient:-) max_ev_support = 1 scaffold_3 - intron 5774893-5775417 asmbl_38860,asmbl_38862,asmbl_38865 scaffold_3 - retained_intron 5774893-5775417 asmbl_38859,asmbl_38861 // Exon Skipping and Retention # skipped_exon 5927206-5928685 (orient:-) max_ev_support = 1 # retained_exon 5927361-5928299 (orient:-) max_ev_support = 2 scaffold_3 - retained_exons 5927361-5927422,5927546-5927618,5927855-5927910,5928005-5928052,5928150-5928299 asmbl_38872,asmbl_38875 scaffold_3 - intron_skips_exon 5927206-5928685 asmbl_38873 // Exon Skipping and Retention # skipped_exon 5928825-5929630 (orient:-) max_ev_support = 1 # retained_exon 5929029-5929153 (orient:-) max_ev_support = 2 scaffold_3 - retained_exons 5929029-5929153 asmbl_38872,asmbl_38875 scaffold_3 - intron_skips_exon 5928825-5929630 asmbl_38873 // Retained and Spliced Intron # retained_intron 5926294-5926496 (orient:-) max_ev_support = 1 # spliced_intron 5926294-5926496 (orient:-) max_ev_support = 2 scaffold_3 - intron 5926294-5926496 asmbl_38872,asmbl_38873,asmbl_38874 scaffold_3 - retained_intron 5926294-5926496 asmbl_38875 // Exon Skipping and Retention # skipped_exon 5951042-5951658 (orient:-) max_ev_support = 2 # retained_exon 5951166-5951453 (orient:-) max_ev_support = 2 scaffold_3 - retained_exons 5951166-5951453 asmbl_38879,asmbl_38880,asmbl_38881,asmbl_38882 scaffold_3 - intron_skips_exon 5951042-5951658 asmbl_38878,asmbl_38883 // Exon Skipping and Retention # skipped_exon 6037685-6039291 (orient:-) max_ev_support = 1 # retained_exon 6037861-6038979 (orient:-) max_ev_support = 1 scaffold_3 - retained_exons 6037861-6037923,6038128-6038979 asmbl_38879,asmbl_38881,asmbl_38882 scaffold_3 - intron_skips_exon 6037685-6039291 asmbl_38880,asmbl_38883 // Exon Skipping and Retention # skipped_exon 6041928-6044119 (orient:-) max_ev_support = 1 # retained_exon 6042295-6043728 (orient:-) max_ev_support = 1 scaffold_3 - retained_exons 6042295-6042354,6042734-6042778,6042879-6042935,6043241-6043267,6043347-6043424,6043519-6043728 asmbl_38879 scaffold_3 - intron_skips_exon 6041928-6044119 asmbl_38880 // Exon Skipping and Retention # skipped_exon 6043268-6044119 (orient:-) max_ev_support = 1 # retained_exon 6043347-6043728 (orient:-) max_ev_support = 1 scaffold_3 - retained_exons 6043347-6043424,6043519-6043728 asmbl_38879 scaffold_3 - intron_skips_exon 6043268-6044119 asmbl_38881,asmbl_38882,asmbl_38883 // Retained and Spliced Intron # retained_intron 6046201-6046335 (orient:-) max_ev_support = 1 # spliced_intron 6046201-6046335 (orient:-) max_ev_support = 1 scaffold_3 - intron 6046201-6046335 asmbl_38882 scaffold_3 - retained_intron 6046201-6046335 asmbl_38879,asmbl_38880,asmbl_38881,asmbl_38883 // Retained and Spliced Intron # retained_intron 6049629-6049714 (orient:-) max_ev_support = 1 # spliced_intron 6049629-6049714 (orient:-) max_ev_support = 2 scaffold_3 - intron 6049629-6049714 asmbl_38879,asmbl_38880,asmbl_38882,asmbl_38883,asmbl_38889 scaffold_3 - retained_intron 6049629-6049714 asmbl_38881 // Retained and Spliced Intron # retained_intron 5951042-5951165 (orient:-) max_ev_support = 1 # spliced_intron 5951042-5951165 (orient:-) max_ev_support = 2 scaffold_3 - intron 5951042-5951165 asmbl_38879,asmbl_38880,asmbl_38881,asmbl_38882,asmbl_38885 scaffold_3 - retained_intron 5951042-5951165 asmbl_38884,asmbl_38886,asmbl_38887 // Retained and Spliced Intron # retained_intron 5951042-5951658 (orient:-) max_ev_support = 1 # spliced_intron 5951042-5951658 (orient:-) max_ev_support = 2 scaffold_3 - intron 5951042-5951658 asmbl_38878,asmbl_38883 scaffold_3 - retained_intron 5951042-5951658 asmbl_38884,asmbl_38886 // Retained and Spliced Intron # retained_intron 5951454-5951658 (orient:-) max_ev_support = 1 # spliced_intron 5951454-5951658 (orient:-) max_ev_support = 2 scaffold_3 - intron 5951454-5951658 asmbl_38879,asmbl_38880,asmbl_38881,asmbl_38882,asmbl_38887 scaffold_3 - retained_intron 5951454-5951658 asmbl_38884,asmbl_38885,asmbl_38886 // Retained and Spliced Intron # retained_intron 5951813-5951900 (orient:-) max_ev_support = 1 # spliced_intron 5951813-5951900 (orient:-) max_ev_support = 2 scaffold_3 - intron 5951813-5951900 asmbl_38878,asmbl_38879,asmbl_38880,asmbl_38881,asmbl_38882,asmbl_38883,asmbl_38884,asmbl_38887 scaffold_3 - retained_intron 5951813-5951900 asmbl_38885,asmbl_38886 // Exon Skipping and Retention # skipped_exon 6076986-6079075 (orient:-) max_ev_support = 3 # retained_exon 6077192-6078434 (orient:-) max_ev_support = 3 scaffold_3 - retained_exons 6077192-6077440,6077949-6078062,6078195-6078434 asmbl_38895,asmbl_38896 scaffold_3 - intron_skips_exon 6076986-6079075 asmbl_38894 // Exon Skipping and Retention # skipped_exon 6174096-6176391 (orient:-) max_ev_support = 2 # retained_exon 6174518-6176149 (orient:-) max_ev_support = 2 scaffold_3 - retained_exons 6174518-6176149 asmbl_38901 scaffold_3 - intron_skips_exon 6174096-6176391 asmbl_38902,asmbl_38903,asmbl_38904 // Exon Skipping and Retention # skipped_exon 6170797-6171815 (orient:-) max_ev_support = 2 # retained_exon 6170991-6171653 (orient:-) max_ev_support = 2 scaffold_3 - retained_exons 6170991-6171257,6171387-6171653 asmbl_38902,asmbl_38903 scaffold_3 - intron_skips_exon 6170797-6171815 asmbl_38901,asmbl_38904 // Exon Skipping and Retention # skipped_exon 6176437-6177777 (orient:-) max_ev_support = 2 # retained_exon 6177589-6177666 (orient:-) max_ev_support = 1 scaffold_3 - retained_exons 6177589-6177666 asmbl_38903 scaffold_3 - intron_skips_exon 6176437-6177777 asmbl_38901,asmbl_38902,asmbl_38904 // Exon Skipping and Retention # skipped_exon 6187507-6190087 (orient:-) max_ev_support = 2 # retained_exon 6188092-6189042 (orient:-) max_ev_support = 2 scaffold_3 - retained_exons 6188092-6188133,6188666-6188710,6188803-6188859,6189016-6189042 asmbl_38908,asmbl_38917 scaffold_3 - intron_skips_exon 6187507-6190087 asmbl_38910,asmbl_38916 // Retained and Spliced Intron # retained_intron 6189213-6189316 (orient:-) max_ev_support = 1 # spliced_intron 6189213-6189316 (orient:-) max_ev_support = 1 scaffold_3 - intron 6189213-6189316 asmbl_38914 scaffold_3 - retained_intron 6189213-6189316 asmbl_38911 // Exon Skipping and Retention # skipped_exon 6189043-6190087 (orient:-) max_ev_support = 2 # retained_exon 6189135-6189526 (orient:-) max_ev_support = 1 scaffold_3 - retained_exons 6189135-6189212,6189317-6189526 asmbl_38914 scaffold_3 - intron_skips_exon 6189043-6190087 asmbl_38908,asmbl_38917 // Retained and Spliced Intron # retained_intron 6183517-6183564 (orient:-) max_ev_support = 1 # spliced_intron 6183517-6183564 (orient:-) max_ev_support = 1 scaffold_3 - intron 6183517-6183564 asmbl_38915 scaffold_3 - retained_intron 6183517-6183564 asmbl_38916,asmbl_38917 // Retained and Spliced Intron # retained_intron 6200511-6200607 (orient:-) max_ev_support = 3 # spliced_intron 6200511-6200607 (orient:-) max_ev_support = 3 scaffold_3 - intron 6200511-6200607 asmbl_38920,asmbl_38921 scaffold_3 - retained_intron 6200511-6200607 asmbl_38919 // Retained and Spliced Intron # retained_intron 6200887-6200973 (orient:-) max_ev_support = 3 # spliced_intron 6200887-6200973 (orient:-) max_ev_support = 1 scaffold_3 - intron 6200887-6200973 asmbl_38921 scaffold_3 - retained_intron 6200887-6200973 asmbl_38919,asmbl_38920 // Retained and Spliced Intron # retained_intron 6218352-6218491 (orient:-) max_ev_support = 3 # spliced_intron 6218352-6218491 (orient:-) max_ev_support = 1 scaffold_3 - intron 6218352-6218491 asmbl_38930 scaffold_3 - retained_intron 6218352-6218491 asmbl_38924 // Retained and Spliced Intron # retained_intron 6213194-6213223 (orient:-) max_ev_support = 1 # spliced_intron 6213194-6213223 (orient:-) max_ev_support = 1 scaffold_3 - intron 6213194-6213223 asmbl_38924,asmbl_38929,asmbl_38930 scaffold_3 - retained_intron 6213194-6213223 asmbl_38928 // Exon Skipping and Retention # skipped_exon 6218352-6219358 (orient:-) max_ev_support = 1 # retained_exon 6218492-6218585 (orient:-) max_ev_support = 1 scaffold_3 - retained_exons 6218492-6218585 asmbl_38930 scaffold_3 - intron_skips_exon 6218352-6219358 asmbl_38929 // Retained and Spliced Intron # retained_intron 6240997-6241570 (orient:-) max_ev_support = 2 # spliced_intron 6240997-6241570 (orient:-) max_ev_support = 2 scaffold_3 - intron 6240997-6241570 asmbl_38932,asmbl_38934,asmbl_38935,asmbl_38938 scaffold_3 - retained_intron 6240997-6241570 asmbl_38933,asmbl_38936,asmbl_38937,asmbl_38941 // Retained and Spliced Intron # retained_intron 7287291-7287439 (orient:-) max_ev_support = 3 # spliced_intron 7287291-7287439 (orient:-) max_ev_support = 2 scaffold_3 - intron 7287291-7287439 asmbl_38961,asmbl_38962,asmbl_38963 scaffold_3 - retained_intron 7287291-7287439 asmbl_38960 // Retained and Spliced Intron # retained_intron 7286007-7286114 (orient:-) max_ev_support = 2 # spliced_intron 7286007-7286114 (orient:-) max_ev_support = 2 scaffold_3 - intron 7286007-7286114 asmbl_38961 scaffold_3 - retained_intron 7286007-7286114 asmbl_38962,asmbl_38963 // Exon Skipping and Retention # skipped_exon 7408578-7410004 (orient:-) max_ev_support = 2 # retained_exon 7408924-7408953 (orient:-) max_ev_support = 2 scaffold_3 - retained_exons 7408924-7408953 asmbl_38967 scaffold_3 - intron_skips_exon 7408578-7410004 asmbl_38966 // Retained and Spliced Intron # retained_intron 7708801-7708889 (orient:-) max_ev_support = 1 # spliced_intron 7708801-7708889 (orient:-) max_ev_support = 1 scaffold_3 - intron 7708801-7708889 asmbl_38976,asmbl_38977,asmbl_38978,asmbl_38979,asmbl_38981,asmbl_38982,asmbl_38983 scaffold_3 - retained_intron 7708801-7708889 asmbl_38980,asmbl_38984 // Retained and Spliced Intron # retained_intron 7708984-7709075 (orient:-) max_ev_support = 1 # spliced_intron 7708984-7709075 (orient:-) max_ev_support = 1 scaffold_3 - intron 7708984-7709075 asmbl_38976,asmbl_38978,asmbl_38979,asmbl_38981,asmbl_38983 scaffold_3 - retained_intron 7708984-7709075 asmbl_38980 // Retained and Spliced Intron # retained_intron 7708984-7709096 (orient:-) max_ev_support = 1 # spliced_intron 7708984-7709096 (orient:-) max_ev_support = 1 scaffold_3 - intron 7708984-7709096 asmbl_38977,asmbl_38982,asmbl_38984 scaffold_3 - retained_intron 7708984-7709096 asmbl_38980 // Retained and Spliced Intron # retained_intron 7908386-7908760 (orient:-) max_ev_support = 2 # spliced_intron 7908386-7908760 (orient:-) max_ev_support = 2 scaffold_3 - intron 7908386-7908760 asmbl_38995 scaffold_3 - retained_intron 7908386-7908760 asmbl_38996 // Retained and Spliced Intron # retained_intron 7917839-7917880 (orient:-) max_ev_support = 1 # spliced_intron 7917839-7917880 (orient:-) max_ev_support = 1 scaffold_3 - intron 7917839-7917880 asmbl_38997 scaffold_3 - retained_intron 7917839-7917880 asmbl_39001,asmbl_39002 // Retained and Spliced Intron # retained_intron 7917839-7917894 (orient:-) max_ev_support = 1 # spliced_intron 7917839-7917894 (orient:-) max_ev_support = 1 scaffold_3 - intron 7917839-7917894 asmbl_38999 scaffold_3 - retained_intron 7917839-7917894 asmbl_39001,asmbl_39002 // Retained and Spliced Intron # retained_intron 7917853-7917880 (orient:-) max_ev_support = 1 # spliced_intron 7917853-7917880 (orient:-) max_ev_support = 1 scaffold_3 - intron 7917853-7917880 asmbl_39000 scaffold_3 - retained_intron 7917853-7917880 asmbl_39001,asmbl_39002 // Retained and Spliced Intron # retained_intron 7917853-7917894 (orient:-) max_ev_support = 1 # spliced_intron 7917853-7917894 (orient:-) max_ev_support = 1 scaffold_3 - intron 7917853-7917894 asmbl_38998 scaffold_3 - retained_intron 7917853-7917894 asmbl_39001,asmbl_39002 // Retained and Spliced Intron # retained_intron 7919332-7919535 (orient:-) max_ev_support = 1 # spliced_intron 7919332-7919535 (orient:-) max_ev_support = 1 scaffold_3 - intron 7919332-7919535 asmbl_38997,asmbl_38998,asmbl_38999,asmbl_39000,asmbl_39002 scaffold_3 - retained_intron 7919332-7919535 asmbl_39001 // Exon Skipping and Retention # skipped_exon 7956219-7956673 (orient:-) max_ev_support = 2 # retained_exon 7956311-7956397 (orient:-) max_ev_support = 2 scaffold_3 - retained_exons 7956311-7956397 asmbl_39005,asmbl_39007 scaffold_3 - intron_skips_exon 7956219-7956673 asmbl_39006,asmbl_39008 // Exon Skipping and Retention # skipped_exon 8191936-8193365 (orient:-) max_ev_support = 1 # retained_exon 8192021-8193251 (orient:-) max_ev_support = 2 scaffold_3 - retained_exons 8192021-8192128,8192327-8192431,8192603-8192806,8192940-8193251 asmbl_39010 scaffold_3 - intron_skips_exon 8191936-8193365 asmbl_39020 // Retained and Spliced Intron # retained_intron 8165751-8166312 (orient:-) max_ev_support = 2 # spliced_intron 8165751-8166312 (orient:-) max_ev_support = 1 scaffold_3 - intron 8165751-8166312 asmbl_39010,asmbl_39022 scaffold_3 - retained_intron 8165751-8166312 asmbl_39014 // Retained and Spliced Intron # retained_intron 8165106-8165645 (orient:-) max_ev_support = 1 # spliced_intron 8165106-8165645 (orient:-) max_ev_support = 1 scaffold_3 - intron 8165106-8165645 asmbl_39010 scaffold_3 - retained_intron 8165106-8165645 asmbl_39022 // Retained and Spliced Intron # retained_intron 8245052-8245071 (orient:-) max_ev_support = 1 # spliced_intron 8245052-8245071 (orient:-) max_ev_support = 1 scaffold_3 - intron 8245052-8245071 asmbl_39029 scaffold_3 - retained_intron 8245052-8245071 asmbl_39028 // Exon Skipping and Retention # skipped_exon 8995392-8998178 (orient:-) max_ev_support = 1 # retained_exon 8997704-8997790 (orient:-) max_ev_support = 2 scaffold_3 - retained_exons 8997704-8997790 asmbl_39046,asmbl_39052 scaffold_3 - intron_skips_exon 8995392-8998178 asmbl_39050,asmbl_39051 // Exon Skipping and Retention # skipped_exon 8999514-9000798 (orient:-) max_ev_support = 1 # retained_exon 8999962-9000055 (orient:-) max_ev_support = 2 scaffold_3 - retained_exons 8999962-9000055 asmbl_39046,asmbl_39050 scaffold_3 - intron_skips_exon 8999514-9000798 asmbl_39051,asmbl_39052 // Exon Skipping and Retention # skipped_exon 8998706-8999961 (orient:-) max_ev_support = 2 # retained_exon 8999420-8999513 (orient:-) max_ev_support = 1 scaffold_3 - retained_exons 8999420-8999513 asmbl_39051,asmbl_39052 scaffold_3 - intron_skips_exon 8998706-8999961 asmbl_39046,asmbl_39050 // Exon Skipping and Retention # skipped_exon 9843938-9845789 (orient:-) max_ev_support = 2 # retained_exon 9844427-9844973 (orient:-) max_ev_support = 2 scaffold_3 - retained_exons 9844427-9844603,9844821-9844973 asmbl_39071 scaffold_3 - intron_skips_exon 9843938-9845789 asmbl_39070 // Retained and Spliced Intron # retained_intron 10607348-10607574 (orient:-) max_ev_support = 2 # spliced_intron 10607348-10607574 (orient:-) max_ev_support = 2 scaffold_3 - intron 10607348-10607574 asmbl_39101,asmbl_39104 scaffold_3 - retained_intron 10607348-10607574 asmbl_39098,asmbl_39102 // Retained and Spliced Intron # retained_intron 10937352-10937449 (orient:-) max_ev_support = 2 # spliced_intron 10937352-10937449 (orient:-) max_ev_support = 2 scaffold_3 - intron 10937352-10937449 asmbl_39122 scaffold_3 - retained_intron 10937352-10937449 asmbl_39121,asmbl_39123 // Retained and Spliced Intron # retained_intron 10946294-10946668 (orient:-) max_ev_support = 1 # spliced_intron 10946294-10946668 (orient:-) max_ev_support = 2 scaffold_3 - intron 10946294-10946668 asmbl_39125,asmbl_39128 scaffold_3 - retained_intron 10946294-10946668 asmbl_39127 // Exon Skipping and Retention # skipped_exon 11608270-11609155 (orient:-) max_ev_support = 3 # retained_exon 11608608-11608730 (orient:-) max_ev_support = 2 scaffold_3 - retained_exons 11608608-11608730 asmbl_39174 scaffold_3 - intron_skips_exon 11608270-11609155 asmbl_39173 // Exon Skipping and Retention # skipped_exon 11777605-11778736 (orient:-) max_ev_support = 2 # retained_exon 11778452-11778567 (orient:-) max_ev_support = 1 scaffold_3 - retained_exons 11778452-11778567 asmbl_39189 scaffold_3 - intron_skips_exon 11777605-11778736 asmbl_39188 // Retained and Spliced Intron # retained_intron 12465871-12466558 (orient:-) max_ev_support = 2 # spliced_intron 12465871-12466558 (orient:-) max_ev_support = 3 scaffold_3 - intron 12465871-12466558 asmbl_39214 scaffold_3 - retained_intron 12465871-12466558 asmbl_39215 // Retained and Spliced Intron # retained_intron 12627468-12627566 (orient:-) max_ev_support = 2 # spliced_intron 12627468-12627566 (orient:-) max_ev_support = 2 scaffold_3 - intron 12627468-12627566 asmbl_39218 scaffold_3 - retained_intron 12627468-12627566 asmbl_39217 // Retained and Spliced Intron # retained_intron 13327018-13327170 (orient:-) max_ev_support = 2 # spliced_intron 13327018-13327170 (orient:-) max_ev_support = 3 scaffold_3 - intron 13327018-13327170 asmbl_39247 scaffold_3 - retained_intron 13327018-13327170 asmbl_39248,asmbl_39249 // Retained and Spliced Intron # retained_intron 13327306-13327386 (orient:-) max_ev_support = 2 # spliced_intron 13327306-13327386 (orient:-) max_ev_support = 3 scaffold_3 - intron 13327306-13327386 asmbl_39247,asmbl_39249 scaffold_3 - retained_intron 13327306-13327386 asmbl_39248 // Retained and Spliced Intron # retained_intron 13419144-13419405 (orient:-) max_ev_support = 2 # spliced_intron 13419144-13419405 (orient:-) max_ev_support = 1 scaffold_3 - intron 13419144-13419405 asmbl_39265 scaffold_3 - retained_intron 13419144-13419405 asmbl_39259,asmbl_39260,asmbl_39262,asmbl_39263 // Retained and Spliced Intron # retained_intron 13419144-13419481 (orient:-) max_ev_support = 2 # spliced_intron 13419144-13419481 (orient:-) max_ev_support = 1 scaffold_3 - intron 13419144-13419481 asmbl_39264 scaffold_3 - retained_intron 13419144-13419481 asmbl_39259,asmbl_39260,asmbl_39262,asmbl_39263 // Retained and Spliced Intron # retained_intron 13423924-13424030 (orient:-) max_ev_support = 2 # spliced_intron 13423924-13424030 (orient:-) max_ev_support = 1 scaffold_3 - intron 13423924-13424030 asmbl_39262,asmbl_39265 scaffold_3 - retained_intron 13423924-13424030 asmbl_39259 // Retained and Spliced Intron # retained_intron 13423924-13424513 (orient:-) max_ev_support = 2 # spliced_intron 13423924-13424513 (orient:-) max_ev_support = 1 scaffold_3 - intron 13423924-13424513 asmbl_39263,asmbl_39264 scaffold_3 - retained_intron 13423924-13424513 asmbl_39259 // Exon Skipping and Retention # skipped_exon 13423924-13425865 (orient:-) max_ev_support = 2 # retained_exon 13424031-13424799 (orient:-) max_ev_support = 1 scaffold_3 - retained_exons 13424031-13424799 asmbl_39262,asmbl_39265 scaffold_3 - intron_skips_exon 13423924-13425865 asmbl_39260 // Exon Skipping and Retention # skipped_exon 13424800-13425865 (orient:-) max_ev_support = 2 # retained_exon 13425154-13425197 (orient:-) max_ev_support = 1 scaffold_3 - retained_exons 13425154-13425197 asmbl_39264 scaffold_3 - intron_skips_exon 13424800-13425865 asmbl_39259,asmbl_39262,asmbl_39263,asmbl_39265 // Exon Skipping and Retention # skipped_exon 13647877-13648874 (orient:-) max_ev_support = 3 # retained_exon 13648702-13648766 (orient:-) max_ev_support = 3 scaffold_3 - retained_exons 13648702-13648766 asmbl_39275 scaffold_3 - intron_skips_exon 13647877-13648874 asmbl_39274 // Retained and Spliced Intron # retained_intron 13647877-13648701 (orient:-) max_ev_support = 3 # spliced_intron 13647877-13648701 (orient:-) max_ev_support = 3 scaffold_3 - intron 13647877-13648701 asmbl_39275 scaffold_3 - retained_intron 13647877-13648701 asmbl_39276 // Retained and Spliced Intron # retained_intron 13647877-13648874 (orient:-) max_ev_support = 3 # spliced_intron 13647877-13648874 (orient:-) max_ev_support = 3 scaffold_3 - intron 13647877-13648874 asmbl_39274 scaffold_3 - retained_intron 13647877-13648874 asmbl_39276 // Retained and Spliced Intron # retained_intron 13648767-13648874 (orient:-) max_ev_support = 3 # spliced_intron 13648767-13648874 (orient:-) max_ev_support = 3 scaffold_3 - intron 13648767-13648874 asmbl_39275 scaffold_3 - retained_intron 13648767-13648874 asmbl_39276 // Exon Skipping and Retention # skipped_exon 13664353-13664809 (orient:-) max_ev_support = 1 # retained_exon 13664588-13664678 (orient:-) max_ev_support = 1 scaffold_3 - retained_exons 13664588-13664678 asmbl_39280 scaffold_3 - intron_skips_exon 13664353-13664809 asmbl_39281 // Retained and Spliced Intron # retained_intron 13801022-13801246 (orient:-) max_ev_support = 2 # spliced_intron 13801022-13801246 (orient:-) max_ev_support = 2 scaffold_3 - intron 13801022-13801246 asmbl_39302 scaffold_3 - retained_intron 13801022-13801246 asmbl_39303,asmbl_39304,asmbl_39305 // Retained and Spliced Intron # retained_intron 13800170-13800928 (orient:-) max_ev_support = 2 # spliced_intron 13800170-13800928 (orient:-) max_ev_support = 2 scaffold_3 - intron 13800170-13800928 asmbl_39302,asmbl_39303,asmbl_39305 scaffold_3 - retained_intron 13800170-13800928 asmbl_39304 // Exon Skipping and Retention # skipped_exon 13958707-13958998 (orient:-) max_ev_support = 3 # retained_exon 13958772-13958806 (orient:-) max_ev_support = 3 scaffold_3 - retained_exons 13958772-13958806 asmbl_39313 scaffold_3 - intron_skips_exon 13958707-13958998 asmbl_39314 // Exon Skipping and Retention # skipped_exon 13986406-13987046 (orient:-) max_ev_support = 2 # retained_exon 13986481-13986906 (orient:-) max_ev_support = 2 scaffold_3 - retained_exons 13986481-13986627,13986838-13986906 asmbl_39317 scaffold_3 - intron_skips_exon 13986406-13987046 asmbl_39318 // Retained and Spliced Intron # retained_intron 14177620-14177901 (orient:-) max_ev_support = 3 # spliced_intron 14177620-14177901 (orient:-) max_ev_support = 2 scaffold_3 - intron 14177620-14177901 asmbl_39324 scaffold_3 - retained_intron 14177620-14177901 asmbl_39323 // Retained and Spliced Intron # retained_intron 14183210-14183724 (orient:-) max_ev_support = 2 # spliced_intron 14183210-14183724 (orient:-) max_ev_support = 2 scaffold_3 - intron 14183210-14183724 asmbl_39329,asmbl_39330,asmbl_39332 scaffold_3 - retained_intron 14183210-14183724 asmbl_39327,asmbl_39328,asmbl_39331,asmbl_39333 // Retained and Spliced Intron # retained_intron 14186470-14186940 (orient:-) max_ev_support = 3 # spliced_intron 14186470-14186940 (orient:-) max_ev_support = 2 scaffold_3 - intron 14186470-14186940 asmbl_39330,asmbl_39331,asmbl_39332,asmbl_39333,asmbl_39334,asmbl_39335 scaffold_3 - retained_intron 14186470-14186940 asmbl_39327 // Retained and Spliced Intron # retained_intron 14187141-14189176 (orient:-) max_ev_support = 3 # spliced_intron 14187141-14189176 (orient:-) max_ev_support = 1 scaffold_3 - intron 14187141-14189176 asmbl_39332 scaffold_3 - retained_intron 14187141-14189176 asmbl_39327,asmbl_39331,asmbl_39333 // Retained and Spliced Intron # retained_intron 14187141-14189188 (orient:-) max_ev_support = 3 # spliced_intron 14187141-14189188 (orient:-) max_ev_support = 2 scaffold_3 - intron 14187141-14189188 asmbl_39330,asmbl_39334,asmbl_39335 scaffold_3 - retained_intron 14187141-14189188 asmbl_39327,asmbl_39331,asmbl_39333 // Retained and Spliced Intron # retained_intron 14186116-14186271 (orient:-) max_ev_support = 1 # spliced_intron 14186116-14186271 (orient:-) max_ev_support = 2 scaffold_3 - intron 14186116-14186271 asmbl_39327,asmbl_39330,asmbl_39331 scaffold_3 - retained_intron 14186116-14186271 asmbl_39332,asmbl_39333,asmbl_39334 // Retained and Spliced Intron # retained_intron 14186116-14186364 (orient:-) max_ev_support = 1 # spliced_intron 14186116-14186364 (orient:-) max_ev_support = 1 scaffold_3 - intron 14186116-14186364 asmbl_39335 scaffold_3 - retained_intron 14186116-14186364 asmbl_39332,asmbl_39333,asmbl_39334 // Retained and Spliced Intron # retained_intron 14301647-14301823 (orient:-) max_ev_support = 3 # spliced_intron 14301647-14301823 (orient:-) max_ev_support = 3 scaffold_3 - intron 14301647-14301823 asmbl_39346 scaffold_3 - retained_intron 14301647-14301823 asmbl_39347 // Retained and Spliced Intron # retained_intron 14319899-14319995 (orient:-) max_ev_support = 2 # spliced_intron 14319899-14319995 (orient:-) max_ev_support = 3 scaffold_3 - intron 14319899-14319995 asmbl_39355 scaffold_3 - retained_intron 14319899-14319995 asmbl_39356,asmbl_39357 // Retained and Spliced Intron # retained_intron 14317546-14317663 (orient:-) max_ev_support = 1 # spliced_intron 14317546-14317663 (orient:-) max_ev_support = 2 scaffold_3 - intron 14317546-14317663 asmbl_39355,asmbl_39356,asmbl_39359 scaffold_3 - retained_intron 14317546-14317663 asmbl_39358 // Retained and Spliced Intron # retained_intron 14334025-14334182 (orient:-) max_ev_support = 3 # spliced_intron 14334025-14334182 (orient:-) max_ev_support = 3 scaffold_3 - intron 14334025-14334182 asmbl_39362,asmbl_39363 scaffold_3 - retained_intron 14334025-14334182 asmbl_39364 // Retained and Spliced Intron # retained_intron 14433082-14433258 (orient:-) max_ev_support = 3 # spliced_intron 14433082-14433258 (orient:-) max_ev_support = 3 scaffold_3 - intron 14433082-14433258 asmbl_39371,asmbl_39374 scaffold_3 - retained_intron 14433082-14433258 asmbl_39372 // Retained and Spliced Intron # retained_intron 14495657-14495730 (orient:-) max_ev_support = 1 # spliced_intron 14495657-14495730 (orient:-) max_ev_support = 1 scaffold_3 - intron 14495657-14495730 asmbl_39379 scaffold_3 - retained_intron 14495657-14495730 asmbl_39378 // Exon Skipping and Retention # skipped_exon 14495186-14495730 (orient:-) max_ev_support = 2 # retained_exon 14495454-14495656 (orient:-) max_ev_support = 2 scaffold_3 - retained_exons 14495454-14495656 asmbl_39379 scaffold_3 - intron_skips_exon 14495186-14495730 asmbl_39382,asmbl_39383 // Exon Skipping and Retention # skipped_exon 14513575-14514227 (orient:-) max_ev_support = 1 # retained_exon 14514078-14514131 (orient:-) max_ev_support = 3 scaffold_3 - retained_exons 14514078-14514131 asmbl_39385 scaffold_3 - intron_skips_exon 14513575-14514227 asmbl_39387 // Exon Skipping and Retention # skipped_exon 14513809-14514499 (orient:-) max_ev_support = 1 # retained_exon 14514078-14514365 (orient:-) max_ev_support = 3 scaffold_3 - retained_exons 14514078-14514131,14514228-14514365 asmbl_39385 scaffold_3 - intron_skips_exon 14513809-14514499 asmbl_39386 // Exon Skipping and Retention # skipped_exon 14512784-14514077 (orient:-) max_ev_support = 3 # retained_exon 14513521-14513808 (orient:-) max_ev_support = 1 scaffold_3 - retained_exons 14513521-14513574,14513671-14513808 asmbl_39386 scaffold_3 - intron_skips_exon 14512784-14514077 asmbl_39385 // Retained and Spliced Intron # retained_intron 14519626-14519705 (orient:-) max_ev_support = 2 # spliced_intron 14519626-14519705 (orient:-) max_ev_support = 3 scaffold_3 - intron 14519626-14519705 asmbl_39388,asmbl_39390 scaffold_3 - retained_intron 14519626-14519705 asmbl_39389 // Exon Skipping and Retention # skipped_exon 14530559-14532845 (orient:-) max_ev_support = 2 # retained_exon 14531538-14531594 (orient:-) max_ev_support = 2 scaffold_3 - retained_exons 14531538-14531594 asmbl_39392 scaffold_3 - intron_skips_exon 14530559-14532845 asmbl_39393 // Retained and Spliced Intron # retained_intron 14559144-14559490 (orient:-) max_ev_support = 3 # spliced_intron 14559144-14559490 (orient:-) max_ev_support = 3 scaffold_3 - intron 14559144-14559490 asmbl_39396 scaffold_3 - retained_intron 14559144-14559490 asmbl_39395 // Exon Skipping and Retention # skipped_exon 14576071-14578468 (orient:-) max_ev_support = 2 # retained_exon 14576165-14576217 (orient:-) max_ev_support = 2 scaffold_3 - retained_exons 14576165-14576217 asmbl_39398 scaffold_3 - intron_skips_exon 14576071-14578468 asmbl_39397 // Exon Skipping and Retention # skipped_exon 14571129-14573597 (orient:-) max_ev_support = 2 # retained_exon 14573434-14573502 (orient:-) max_ev_support = 1 scaffold_3 - retained_exons 14573434-14573502 asmbl_39399 scaffold_3 - intron_skips_exon 14571129-14573597 asmbl_39397,asmbl_39398,asmbl_39401 // Retained and Spliced Intron # retained_intron 14587006-14587312 (orient:-) max_ev_support = 2 # spliced_intron 14587006-14587312 (orient:-) max_ev_support = 3 scaffold_3 - intron 14587006-14587312 asmbl_39403 scaffold_3 - retained_intron 14587006-14587312 asmbl_39404 // Retained and Spliced Intron # retained_intron 14700578-14700686 (orient:-) max_ev_support = 2 # spliced_intron 14700578-14700686 (orient:-) max_ev_support = 1 scaffold_3 - intron 14700578-14700686 asmbl_39412 scaffold_3 - retained_intron 14700578-14700686 asmbl_39411 // Retained and Spliced Intron # retained_intron 14763888-14764213 (orient:-) max_ev_support = 3 # spliced_intron 14763888-14764213 (orient:-) max_ev_support = 2 scaffold_3 - intron 14763888-14764213 asmbl_39417,asmbl_39418,asmbl_39420 scaffold_3 - retained_intron 14763888-14764213 asmbl_39415,asmbl_39419 // Retained and Spliced Intron # retained_intron 14774473-14774932 (orient:-) max_ev_support = 2 # spliced_intron 14774473-14774932 (orient:-) max_ev_support = 2 scaffold_3 - intron 14774473-14774932 asmbl_39423 scaffold_3 - retained_intron 14774473-14774932 asmbl_39424 // Exon Skipping and Retention # skipped_exon 14807270-14807933 (orient:-) max_ev_support = 2 # retained_exon 14807664-14807675 (orient:-) max_ev_support = 1 scaffold_3 - retained_exons 14807664-14807675 asmbl_39430 scaffold_3 - intron_skips_exon 14807270-14807933 asmbl_39429 // Retained and Spliced Intron # retained_intron 15741539-15741648 (orient:-) max_ev_support = 2 # spliced_intron 15741539-15741648 (orient:-) max_ev_support = 2 scaffold_3 - intron 15741539-15741648 asmbl_39440,asmbl_39442 scaffold_3 - retained_intron 15741539-15741648 asmbl_39438,asmbl_39439 // Exon Skipping and Retention # skipped_exon 15784164-15787002 (orient:-) max_ev_support = 1 # retained_exon 15785044-15785748 (orient:-) max_ev_support = 2 scaffold_3 - retained_exons 15785044-15785748 asmbl_39449 scaffold_3 - intron_skips_exon 15784164-15787002 asmbl_39450 // Retained and Spliced Intron # retained_intron 15781656-15781744 (orient:-) max_ev_support = 1 # spliced_intron 15781656-15781744 (orient:-) max_ev_support = 2 scaffold_3 - intron 15781656-15781744 asmbl_39449,asmbl_39450,asmbl_39451 scaffold_3 - retained_intron 15781656-15781744 asmbl_39452 // Retained and Spliced Intron # retained_intron 16006545-16006633 (orient:-) max_ev_support = 1 # spliced_intron 16006545-16006633 (orient:-) max_ev_support = 2 scaffold_3 - intron 16006545-16006633 asmbl_39467 scaffold_3 - retained_intron 16006545-16006633 asmbl_39470 // Exon Skipping and Retention # skipped_exon 16076915-16079016 (orient:-) max_ev_support = 1 # retained_exon 16077959-16078006 (orient:-) max_ev_support = 2 scaffold_3 - retained_exons 16077959-16078006 asmbl_39473,asmbl_39474 scaffold_3 - intron_skips_exon 16076915-16079016 asmbl_39475 // Exon Skipping and Retention # skipped_exon 16076915-16078214 (orient:-) max_ev_support = 1 # retained_exon 16077959-16078006 (orient:-) max_ev_support = 2 scaffold_3 - retained_exons 16077959-16078006 asmbl_39473,asmbl_39474 scaffold_3 - intron_skips_exon 16076915-16078214 asmbl_39476 // Exon Skipping and Retention # skipped_exon 16078007-16079016 (orient:-) max_ev_support = 2 # retained_exon 16078215-16078232 (orient:-) max_ev_support = 2 scaffold_3 - retained_exons 16078215-16078232 asmbl_39474,asmbl_39476 scaffold_3 - intron_skips_exon 16078007-16079016 asmbl_39473 // Retained and Spliced Intron # retained_intron 16336074-16336193 (orient:-) max_ev_support = 3 # spliced_intron 16336074-16336193 (orient:-) max_ev_support = 1 scaffold_3 - intron 16336074-16336193 asmbl_39494 scaffold_3 - retained_intron 16336074-16336193 asmbl_39493 // Exon Skipping and Retention # skipped_exon 16346254-16347398 (orient:-) max_ev_support = 2 # retained_exon 16346338-16347311 (orient:-) max_ev_support = 5 scaffold_3 - retained_exons 16346338-16347311 asmbl_39496 scaffold_3 - intron_skips_exon 16346254-16347398 asmbl_39499,asmbl_39501 // Retained and Spliced Intron # retained_intron 16346254-16346337 (orient:-) max_ev_support = 2 # spliced_intron 16346254-16346337 (orient:-) max_ev_support = 2 scaffold_3 - intron 16346254-16346337 asmbl_39496 scaffold_3 - retained_intron 16346254-16346337 asmbl_39497 // Exon Skipping and Retention # skipped_exon 16797210-16800128 (orient:-) max_ev_support = 2 # retained_exon 16799187-16799398 (orient:-) max_ev_support = 1 scaffold_3 - retained_exons 16799187-16799398 asmbl_39516 scaffold_3 - intron_skips_exon 16797210-16800128 asmbl_39515 // Exon Skipping and Retention # skipped_exon 17083146-17084104 (orient:-) max_ev_support = 1 # retained_exon 17083237-17083321 (orient:-) max_ev_support = 1 scaffold_3 - retained_exons 17083237-17083321 asmbl_39534 scaffold_3 - intron_skips_exon 17083146-17084104 asmbl_39535 // Retained and Spliced Intron # retained_intron 17094055-17094262 (orient:-) max_ev_support = 2 # spliced_intron 17094055-17094262 (orient:-) max_ev_support = 2 scaffold_3 - intron 17094055-17094262 asmbl_39537 scaffold_3 - retained_intron 17094055-17094262 asmbl_39536,asmbl_39538 // Retained and Spliced Intron # retained_intron 17094412-17095225 (orient:-) max_ev_support = 3 # spliced_intron 17094412-17095225 (orient:-) max_ev_support = 2 scaffold_3 - intron 17094412-17095225 asmbl_39537,asmbl_39538 scaffold_3 - retained_intron 17094412-17095225 asmbl_39536 // Retained and Spliced Intron # retained_intron 17338585-17338883 (orient:-) max_ev_support = 2 # spliced_intron 17338585-17338883 (orient:-) max_ev_support = 2 scaffold_3 - intron 17338585-17338883 asmbl_39541 scaffold_3 - retained_intron 17338585-17338883 asmbl_39542 // Exon Skipping and Retention # skipped_exon 17366201-17366613 (orient:-) max_ev_support = 1 # retained_exon 17366415-17366491 (orient:-) max_ev_support = 2 scaffold_3 - retained_exons 17366415-17366491 asmbl_39547,asmbl_39550,asmbl_39552,asmbl_39555,asmbl_39556 scaffold_3 - intron_skips_exon 17366201-17366613 asmbl_39549,asmbl_39551,asmbl_39554 // Retained and Spliced Intron # retained_intron 17361952-17362032 (orient:-) max_ev_support = 2 # spliced_intron 17361952-17362032 (orient:-) max_ev_support = 2 scaffold_3 - intron 17361952-17362032 asmbl_39547,asmbl_39549,asmbl_39550,asmbl_39551,asmbl_39552,asmbl_39553,asmbl_39554,asmbl_39555,asmbl_39556,asmbl_39557 scaffold_3 - retained_intron 17361952-17362032 asmbl_39548,asmbl_39558 // Retained and Spliced Intron # retained_intron 17364750-17364900 (orient:-) max_ev_support = 1 # spliced_intron 17364750-17364900 (orient:-) max_ev_support = 1 scaffold_3 - intron 17364750-17364900 asmbl_39552 scaffold_3 - retained_intron 17364750-17364900 asmbl_39550,asmbl_39556 // Retained and Spliced Intron # retained_intron 17364750-17365193 (orient:-) max_ev_support = 1 # spliced_intron 17364750-17365193 (orient:-) max_ev_support = 2 scaffold_3 - intron 17364750-17365193 asmbl_39547,asmbl_39548,asmbl_39551,asmbl_39554,asmbl_39555 scaffold_3 - retained_intron 17364750-17365193 asmbl_39550,asmbl_39556 // Retained and Spliced Intron # retained_intron 17364766-17365193 (orient:-) max_ev_support = 1 # spliced_intron 17364766-17365193 (orient:-) max_ev_support = 2 scaffold_3 - intron 17364766-17365193 asmbl_39549,asmbl_39557 scaffold_3 - retained_intron 17364766-17365193 asmbl_39550,asmbl_39556 // Retained and Spliced Intron # retained_intron 17362106-17362259 (orient:-) max_ev_support = 1 # spliced_intron 17362106-17362259 (orient:-) max_ev_support = 2 scaffold_3 - intron 17362106-17362259 asmbl_39547,asmbl_39548,asmbl_39549,asmbl_39550,asmbl_39554 scaffold_3 - retained_intron 17362106-17362259 asmbl_39551,asmbl_39552,asmbl_39553,asmbl_39555,asmbl_39556,asmbl_39557,asmbl_39558 // Retained and Spliced Intron # retained_intron 17535333-17535434 (orient:-) max_ev_support = 2 # spliced_intron 17535333-17535434 (orient:-) max_ev_support = 2 scaffold_3 - intron 17535333-17535434 asmbl_39570,asmbl_39571 scaffold_3 - retained_intron 17535333-17535434 asmbl_39569,asmbl_39572 // Exon Skipping and Retention # skipped_exon 17536205-17536591 (orient:-) max_ev_support = 2 # retained_exon 17536305-17536373 (orient:-) max_ev_support = 2 scaffold_3 - retained_exons 17536305-17536373 asmbl_39570,asmbl_39572 scaffold_3 - intron_skips_exon 17536205-17536591 asmbl_39569,asmbl_39571 // Retained and Spliced Intron # retained_intron 17849572-17849654 (orient:-) max_ev_support = 2 # spliced_intron 17849572-17849654 (orient:-) max_ev_support = 1 scaffold_3 - intron 17849572-17849654 asmbl_39577 scaffold_3 - retained_intron 17849572-17849654 asmbl_39576 // Exon Skipping and Retention # skipped_exon 18141547-18142686 (orient:-) max_ev_support = 1 # retained_exon 18141712-18142100 (orient:-) max_ev_support = 2 scaffold_3 - retained_exons 18141712-18141837,18141960-18142100 asmbl_39592,asmbl_39593,asmbl_39595 scaffold_3 - intron_skips_exon 18141547-18142686 asmbl_39594 // Exon Skipping and Retention # skipped_exon 18154089-18156320 (orient:-) max_ev_support = 2 # retained_exon 18154875-18154934 (orient:-) max_ev_support = 2 scaffold_3 - retained_exons 18154875-18154934 asmbl_39596 scaffold_3 - intron_skips_exon 18154089-18156320 asmbl_39597 // Exon Skipping and Retention # skipped_exon 18154089-18156850 (orient:-) max_ev_support = 1 # retained_exon 18154875-18156395 (orient:-) max_ev_support = 2 scaffold_3 - retained_exons 18154875-18154934,18156321-18156395 asmbl_39596 scaffold_3 - intron_skips_exon 18154089-18156850 asmbl_39598,asmbl_39599 // Retained and Spliced Intron # retained_intron 18372532-18372629 (orient:-) max_ev_support = 1 # spliced_intron 18372532-18372629 (orient:-) max_ev_support = 1 scaffold_3 - intron 18372532-18372629 asmbl_39619 scaffold_3 - retained_intron 18372532-18372629 asmbl_39620 // Retained and Spliced Intron # retained_intron 18372738-18372846 (orient:-) max_ev_support = 1 # spliced_intron 18372738-18372846 (orient:-) max_ev_support = 1 scaffold_3 - intron 18372738-18372846 asmbl_39619 scaffold_3 - retained_intron 18372738-18372846 asmbl_39620 // Exon Skipping and Retention # skipped_exon 18376861-18377450 (orient:-) max_ev_support = 1 # retained_exon 18376956-18377274 (orient:-) max_ev_support = 2 scaffold_3 - retained_exons 18376956-18377018,18377179-18377274 asmbl_39621 scaffold_3 - intron_skips_exon 18376861-18377450 asmbl_39622 // Exon Skipping and Retention # skipped_exon 18494690-18496221 (orient:-) max_ev_support = 2 # retained_exon 18495876-18495899 (orient:-) max_ev_support = 1 scaffold_3 - retained_exons 18495876-18495899 asmbl_39628 scaffold_3 - intron_skips_exon 18494690-18496221 asmbl_39627 // Retained and Spliced Intron # retained_intron 19029164-19029934 (orient:-) max_ev_support = 1 # spliced_intron 19029164-19029934 (orient:-) max_ev_support = 1 scaffold_3 - intron 19029164-19029934 asmbl_39636,asmbl_39639 scaffold_3 - retained_intron 19029164-19029934 asmbl_39637 // Exon Skipping and Retention # skipped_exon 19407196-19407789 (orient:-) max_ev_support = 1 # retained_exon 19407474-19407526 (orient:-) max_ev_support = 2 scaffold_3 - retained_exons 19407474-19407526 asmbl_39647,asmbl_39648,asmbl_39652 scaffold_3 - intron_skips_exon 19407196-19407789 asmbl_39650,asmbl_39653 // Retained and Spliced Intron # retained_intron 19407196-19407399 (orient:-) max_ev_support = 1 # spliced_intron 19407196-19407399 (orient:-) max_ev_support = 1 scaffold_3 - intron 19407196-19407399 asmbl_39651 scaffold_3 - retained_intron 19407196-19407399 asmbl_39649 // Retained and Spliced Intron # retained_intron 19407196-19407473 (orient:-) max_ev_support = 1 # spliced_intron 19407196-19407473 (orient:-) max_ev_support = 2 scaffold_3 - intron 19407196-19407473 asmbl_39647,asmbl_39648,asmbl_39652 scaffold_3 - retained_intron 19407196-19407473 asmbl_39649 // Retained and Spliced Intron # retained_intron 19821324-19822204 (orient:-) max_ev_support = 5 # spliced_intron 19821324-19822204 (orient:-) max_ev_support = 3 scaffold_3 - intron 19821324-19822204 asmbl_39661 scaffold_3 - retained_intron 19821324-19822204 asmbl_39659,asmbl_39660 // Retained and Spliced Intron # retained_intron 19885475-19886383 (orient:-) max_ev_support = 5 # spliced_intron 19885475-19886383 (orient:-) max_ev_support = 3 scaffold_3 - intron 19885475-19886383 asmbl_39671,asmbl_39674 scaffold_3 - retained_intron 19885475-19886383 asmbl_39669 // Retained and Spliced Intron # retained_intron 19885475-19886465 (orient:-) max_ev_support = 5 # spliced_intron 19885475-19886465 (orient:-) max_ev_support = 1 scaffold_3 - intron 19885475-19886465 asmbl_39673 scaffold_3 - retained_intron 19885475-19886465 asmbl_39669 // Retained and Spliced Intron # retained_intron 19884864-19885175 (orient:-) max_ev_support = 2 # spliced_intron 19884864-19885175 (orient:-) max_ev_support = 3 scaffold_3 - intron 19884864-19885175 asmbl_39671,asmbl_39672 scaffold_3 - retained_intron 19884864-19885175 asmbl_39670,asmbl_39673 // Retained and Spliced Intron # retained_intron 19884864-19885401 (orient:-) max_ev_support = 2 # spliced_intron 19884864-19885401 (orient:-) max_ev_support = 3 scaffold_3 - intron 19884864-19885401 asmbl_39669,asmbl_39674 scaffold_3 - retained_intron 19884864-19885401 asmbl_39670,asmbl_39673 // Retained and Spliced Intron # retained_intron 19885239-19885401 (orient:-) max_ev_support = 2 # spliced_intron 19885239-19885401 (orient:-) max_ev_support = 3 scaffold_3 - intron 19885239-19885401 asmbl_39671,asmbl_39672 scaffold_3 - retained_intron 19885239-19885401 asmbl_39670,asmbl_39673 // Exon Skipping and Retention # skipped_exon 19884864-19885401 (orient:-) max_ev_support = 3 # retained_exon 19885176-19885238 (orient:-) max_ev_support = 3 scaffold_3 - retained_exons 19885176-19885238 asmbl_39671,asmbl_39672 scaffold_3 - intron_skips_exon 19884864-19885401 asmbl_39669,asmbl_39674 // Retained and Spliced Intron # retained_intron 19882464-19882567 (orient:-) max_ev_support = 2 # spliced_intron 19882464-19882567 (orient:-) max_ev_support = 1 scaffold_3 - intron 19882464-19882567 asmbl_39676 scaffold_3 - retained_intron 19882464-19882567 asmbl_39675 // Retained and Spliced Intron # retained_intron 19887827-19887892 (orient:-) max_ev_support = 3 # spliced_intron 19887827-19887892 (orient:-) max_ev_support = 1 scaffold_3 - intron 19887827-19887892 asmbl_39678 scaffold_3 - retained_intron 19887827-19887892 asmbl_39677 // Retained and Spliced Intron # retained_intron 192086-192185 (orient:+) max_ev_support = 3 # spliced_intron 192086-192185 (orient:+) max_ev_support = 1 scaffold_3 + intron 192086-192185 asmbl_39810 scaffold_3 + retained_intron 192086-192185 asmbl_39809 // Retained and Spliced Intron # retained_intron 795219-795435 (orient:+) max_ev_support = 2 # spliced_intron 795219-795435 (orient:+) max_ev_support = 2 scaffold_3 + intron 795219-795435 asmbl_39814 scaffold_3 + retained_intron 795219-795435 asmbl_39813 // Retained and Spliced Intron # retained_intron 1089470-1089642 (orient:+) max_ev_support = 2 # spliced_intron 1089470-1089642 (orient:+) max_ev_support = 1 scaffold_3 + intron 1089470-1089642 asmbl_39830,asmbl_39831 scaffold_3 + retained_intron 1089470-1089642 asmbl_39829 // Retained and Spliced Intron # retained_intron 1089700-1089735 (orient:+) max_ev_support = 1 # spliced_intron 1089700-1089735 (orient:+) max_ev_support = 2 scaffold_3 + intron 1089700-1089735 asmbl_39829,asmbl_39831 scaffold_3 + retained_intron 1089700-1089735 asmbl_39830 // Retained and Spliced Intron # retained_intron 1487982-1488142 (orient:+) max_ev_support = 3 # spliced_intron 1487982-1488142 (orient:+) max_ev_support = 1 scaffold_3 + intron 1487982-1488142 asmbl_39857 scaffold_3 + retained_intron 1487982-1488142 asmbl_39856 // Exon Skipping and Retention # skipped_exon 1758083-1758974 (orient:+) max_ev_support = 1 # retained_exon 1758480-1758557 (orient:+) max_ev_support = 3 scaffold_3 + retained_exons 1758480-1758557 asmbl_39872,asmbl_39874,asmbl_39875 scaffold_3 + intron_skips_exon 1758083-1758974 asmbl_39873 // Retained and Spliced Intron # retained_intron 1765661-1765894 (orient:+) max_ev_support = 2 # spliced_intron 1765661-1765894 (orient:+) max_ev_support = 1 scaffold_3 + intron 1765661-1765894 asmbl_39878,asmbl_39883 scaffold_3 + retained_intron 1765661-1765894 asmbl_39879,asmbl_39881 // Retained and Spliced Intron # retained_intron 1767415-1767435 (orient:+) max_ev_support = 2 # spliced_intron 1767415-1767435 (orient:+) max_ev_support = 1 scaffold_3 + intron 1767415-1767435 asmbl_39883 scaffold_3 + retained_intron 1767415-1767435 asmbl_39882 // Retained and Spliced Intron # retained_intron 1767415-1767456 (orient:+) max_ev_support = 2 # spliced_intron 1767415-1767456 (orient:+) max_ev_support = 1 scaffold_3 + intron 1767415-1767456 asmbl_39880 scaffold_3 + retained_intron 1767415-1767456 asmbl_39882 // Retained and Spliced Intron # retained_intron 1841145-1841393 (orient:+) max_ev_support = 3 # spliced_intron 1841145-1841393 (orient:+) max_ev_support = 2 scaffold_3 + intron 1841145-1841393 asmbl_39892 scaffold_3 + retained_intron 1841145-1841393 asmbl_39891 // Exon Skipping and Retention # skipped_exon 1839647-1840955 (orient:+) max_ev_support = 1 # retained_exon 1840093-1840248 (orient:+) max_ev_support = 2 scaffold_3 + retained_exons 1840093-1840248 asmbl_39892 scaffold_3 + intron_skips_exon 1839647-1840955 asmbl_39891 // Retained and Spliced Intron # retained_intron 2264175-2264205 (orient:+) max_ev_support = 2 # spliced_intron 2264175-2264205 (orient:+) max_ev_support = 1 scaffold_3 + intron 2264175-2264205 asmbl_39904 scaffold_3 + retained_intron 2264175-2264205 asmbl_39903 // Retained and Spliced Intron # retained_intron 2269178-2269345 (orient:+) max_ev_support = 2 # spliced_intron 2269178-2269345 (orient:+) max_ev_support = 2 scaffold_3 + intron 2269178-2269345 asmbl_39905 scaffold_3 + retained_intron 2269178-2269345 asmbl_39906 // Exon Skipping and Retention # skipped_exon 2667897-2668742 (orient:+) max_ev_support = 2 # retained_exon 2668199-2668225 (orient:+) max_ev_support = 2 scaffold_3 + retained_exons 2668199-2668225 asmbl_39916,asmbl_39917 scaffold_3 + intron_skips_exon 2667897-2668742 asmbl_39912,asmbl_39913,asmbl_39914 // Retained and Spliced Intron # retained_intron 3062725-3062797 (orient:+) max_ev_support = 3 # spliced_intron 3062725-3062797 (orient:+) max_ev_support = 3 scaffold_3 + intron 3062725-3062797 asmbl_39930 scaffold_3 + retained_intron 3062725-3062797 asmbl_39931 // Retained and Spliced Intron # retained_intron 3261824-3262038 (orient:+) max_ev_support = 1 # spliced_intron 3261824-3262038 (orient:+) max_ev_support = 1 scaffold_3 + intron 3261824-3262038 asmbl_39938,asmbl_39939 scaffold_3 + retained_intron 3261824-3262038 asmbl_39944 // Exon Skipping and Retention # skipped_exon 3734522-3736476 (orient:+) max_ev_support = 2 # retained_exon 3735950-3736073 (orient:+) max_ev_support = 2 scaffold_3 + retained_exons 3735950-3736073 asmbl_39968 scaffold_3 + intron_skips_exon 3734522-3736476 asmbl_39967 // Retained and Spliced Intron # retained_intron 3890125-3890210 (orient:+) max_ev_support = 1 # spliced_intron 3890125-3890210 (orient:+) max_ev_support = 3 scaffold_3 + intron 3890125-3890210 asmbl_39979 scaffold_3 + retained_intron 3890125-3890210 asmbl_39980 // Retained and Spliced Intron # retained_intron 4257051-4257133 (orient:+) max_ev_support = 2 # spliced_intron 4257051-4257133 (orient:+) max_ev_support = 1 scaffold_3 + intron 4257051-4257133 asmbl_39985 scaffold_3 + retained_intron 4257051-4257133 asmbl_39984 // Retained and Spliced Intron # retained_intron 4275917-4276088 (orient:+) max_ev_support = 2 # spliced_intron 4275917-4276088 (orient:+) max_ev_support = 2 scaffold_3 + intron 4275917-4276088 asmbl_39990 scaffold_3 + retained_intron 4275917-4276088 asmbl_39991 // Retained and Spliced Intron # retained_intron 4282352-4282433 (orient:+) max_ev_support = 1 # spliced_intron 4282352-4282433 (orient:+) max_ev_support = 1 scaffold_3 + intron 4282352-4282433 asmbl_39994 scaffold_3 + retained_intron 4282352-4282433 asmbl_39993 // Retained and Spliced Intron # retained_intron 4282597-4282658 (orient:+) max_ev_support = 1 # spliced_intron 4282597-4282658 (orient:+) max_ev_support = 1 scaffold_3 + intron 4282597-4282658 asmbl_39994 scaffold_3 + retained_intron 4282597-4282658 asmbl_39993 // Retained and Spliced Intron # retained_intron 4304074-4304185 (orient:+) max_ev_support = 1 # spliced_intron 4304074-4304185 (orient:+) max_ev_support = 1 scaffold_3 + intron 4304074-4304185 asmbl_40009 scaffold_3 + retained_intron 4304074-4304185 asmbl_40008 // Retained and Spliced Intron # retained_intron 4889563-4889668 (orient:+) max_ev_support = 2 # spliced_intron 4889563-4889668 (orient:+) max_ev_support = 1 scaffold_3 + intron 4889563-4889668 asmbl_40038,asmbl_40039 scaffold_3 + retained_intron 4889563-4889668 asmbl_40037 // Retained and Spliced Intron # retained_intron 4889766-4890090 (orient:+) max_ev_support = 2 # spliced_intron 4889766-4890090 (orient:+) max_ev_support = 1 scaffold_3 + intron 4889766-4890090 asmbl_40038 scaffold_3 + retained_intron 4889766-4890090 asmbl_40037,asmbl_40039 // Retained and Spliced Intron # retained_intron 4953609-4954271 (orient:+) max_ev_support = 2 # spliced_intron 4953609-4954271 (orient:+) max_ev_support = 2 scaffold_3 + intron 4953609-4954271 asmbl_40047 scaffold_3 + retained_intron 4953609-4954271 asmbl_40046 // Exon Skipping and Retention # skipped_exon 5750863-5753366 (orient:+) max_ev_support = 3 # retained_exon 5751391-5751499 (orient:+) max_ev_support = 1 scaffold_3 + retained_exons 5751391-5751499 asmbl_40081 scaffold_3 + intron_skips_exon 5750863-5753366 asmbl_40075 // Retained and Spliced Intron # retained_intron 6658263-6658355 (orient:+) max_ev_support = 4 # spliced_intron 6658263-6658355 (orient:+) max_ev_support = 2 scaffold_3 + intron 6658263-6658355 asmbl_40110,asmbl_40111,asmbl_40114,asmbl_40115,asmbl_40116 scaffold_3 + retained_intron 6658263-6658355 asmbl_40103,asmbl_40104,asmbl_40105,asmbl_40106,asmbl_40107,asmbl_40108,asmbl_40112,asmbl_40113 // Retained and Spliced Intron # retained_intron 6658411-6658488 (orient:+) max_ev_support = 2 # spliced_intron 6658411-6658488 (orient:+) max_ev_support = 2 scaffold_3 + intron 6658411-6658488 asmbl_40104,asmbl_40108,asmbl_40110,asmbl_40111,asmbl_40112,asmbl_40114,asmbl_40115,asmbl_40116 scaffold_3 + retained_intron 6658411-6658488 asmbl_40103,asmbl_40105,asmbl_40106,asmbl_40107,asmbl_40113 // Retained and Spliced Intron # retained_intron 6658616-6658787 (orient:+) max_ev_support = 2 # spliced_intron 6658616-6658787 (orient:+) max_ev_support = 2 scaffold_3 + intron 6658616-6658787 asmbl_40104,asmbl_40108,asmbl_40110,asmbl_40115 scaffold_3 + retained_intron 6658616-6658787 asmbl_40103,asmbl_40105,asmbl_40106,asmbl_40107,asmbl_40111,asmbl_40112,asmbl_40113,asmbl_40114,asmbl_40116 // Retained and Spliced Intron # retained_intron 6659645-6660509 (orient:+) max_ev_support = 2 # spliced_intron 6659645-6660509 (orient:+) max_ev_support = 2 scaffold_3 + intron 6659645-6660509 asmbl_40106,asmbl_40111 scaffold_3 + retained_intron 6659645-6660509 asmbl_40104,asmbl_40107,asmbl_40109,asmbl_40112,asmbl_40113,asmbl_40114,asmbl_40115 // Retained and Spliced Intron # retained_intron 6659747-6660509 (orient:+) max_ev_support = 2 # spliced_intron 6659747-6660509 (orient:+) max_ev_support = 2 scaffold_3 + intron 6659747-6660509 asmbl_40103,asmbl_40108,asmbl_40110,asmbl_40116 scaffold_3 + retained_intron 6659747-6660509 asmbl_40104,asmbl_40107,asmbl_40109,asmbl_40112,asmbl_40113,asmbl_40114,asmbl_40115 // Retained and Spliced Intron # retained_intron 6659860-6660509 (orient:+) max_ev_support = 2 # spliced_intron 6659860-6660509 (orient:+) max_ev_support = 1 scaffold_3 + intron 6659860-6660509 asmbl_40105 scaffold_3 + retained_intron 6659860-6660509 asmbl_40104,asmbl_40107,asmbl_40109,asmbl_40112,asmbl_40113,asmbl_40114,asmbl_40115 // Retained and Spliced Intron # retained_intron 6661802-6662072 (orient:+) max_ev_support = 3 # spliced_intron 6661802-6662072 (orient:+) max_ev_support = 1 scaffold_3 + intron 6661802-6662072 asmbl_40118 scaffold_3 + retained_intron 6661802-6662072 asmbl_40117 // Retained and Spliced Intron # retained_intron 6692163-6692245 (orient:+) max_ev_support = 1 # spliced_intron 6692163-6692245 (orient:+) max_ev_support = 3 scaffold_3 + intron 6692163-6692245 asmbl_40126 scaffold_3 + retained_intron 6692163-6692245 asmbl_40127 // Exon Skipping and Retention # skipped_exon 6821999-6822283 (orient:+) max_ev_support = 1 # retained_exon 6822082-6822198 (orient:+) max_ev_support = 1 scaffold_3 + retained_exons 6822082-6822198 asmbl_40134 scaffold_3 + intron_skips_exon 6821999-6822283 asmbl_40135 // Retained and Spliced Intron # retained_intron 6871188-6871289 (orient:+) max_ev_support = 2 # spliced_intron 6871188-6871289 (orient:+) max_ev_support = 1 scaffold_3 + intron 6871188-6871289 asmbl_40145 scaffold_3 + retained_intron 6871188-6871289 asmbl_40143 // Retained and Spliced Intron # retained_intron 7593502-7593776 (orient:+) max_ev_support = 1 # spliced_intron 7593502-7593776 (orient:+) max_ev_support = 2 scaffold_3 + intron 7593502-7593776 asmbl_40169 scaffold_3 + retained_intron 7593502-7593776 asmbl_40171 // Retained and Spliced Intron # retained_intron 7727603-7727817 (orient:+) max_ev_support = 1 # spliced_intron 7727603-7727817 (orient:+) max_ev_support = 1 scaffold_3 + intron 7727603-7727817 asmbl_40175,asmbl_40178 scaffold_3 + retained_intron 7727603-7727817 asmbl_40176 // Retained and Spliced Intron # retained_intron 7739054-7739724 (orient:+) max_ev_support = 6 # spliced_intron 7739054-7739724 (orient:+) max_ev_support = 1 scaffold_3 + intron 7739054-7739724 asmbl_40181 scaffold_3 + retained_intron 7739054-7739724 asmbl_40179 // Exon Skipping and Retention # skipped_exon 7924972-7927366 (orient:+) max_ev_support = 1 # retained_exon 7926286-7927017 (orient:+) max_ev_support = 1 scaffold_3 + retained_exons 7926286-7927017 asmbl_40185 scaffold_3 + intron_skips_exon 7924972-7927366 asmbl_40184 // Retained and Spliced Intron # retained_intron 7927018-7927366 (orient:+) max_ev_support = 1 # spliced_intron 7927018-7927366 (orient:+) max_ev_support = 1 scaffold_3 + intron 7927018-7927366 asmbl_40185 scaffold_3 + retained_intron 7927018-7927366 asmbl_40186 // Retained and Spliced Intron # retained_intron 7972688-7972770 (orient:+) max_ev_support = 1 # spliced_intron 7972688-7972770 (orient:+) max_ev_support = 2 scaffold_3 + intron 7972688-7972770 asmbl_40188 scaffold_3 + retained_intron 7972688-7972770 asmbl_40189 // Retained and Spliced Intron # retained_intron 7972688-7972773 (orient:+) max_ev_support = 1 # spliced_intron 7972688-7972773 (orient:+) max_ev_support = 1 scaffold_3 + intron 7972688-7972773 asmbl_40190 scaffold_3 + retained_intron 7972688-7972773 asmbl_40189 // Exon Skipping and Retention # skipped_exon 8253370-8255934 (orient:+) max_ev_support = 1 # retained_exon 8253586-8255632 (orient:+) max_ev_support = 3 scaffold_3 + retained_exons 8253586-8253604,8253991-8254079,8254681-8254802,8255454-8255632 asmbl_40206 scaffold_3 + intron_skips_exon 8253370-8255934 asmbl_40207 // Exon Skipping and Retention # skipped_exon 8532827-8533627 (orient:+) max_ev_support = 1 # retained_exon 8533143-8533271 (orient:+) max_ev_support = 1 scaffold_3 + retained_exons 8533143-8533271 asmbl_40217 scaffold_3 + intron_skips_exon 8532827-8533627 asmbl_40218 // Retained and Spliced Intron # retained_intron 9516758-9517928 (orient:+) max_ev_support = 2 # spliced_intron 9516758-9517928 (orient:+) max_ev_support = 3 scaffold_3 + intron 9516758-9517928 asmbl_40226,asmbl_40227 scaffold_3 + retained_intron 9516758-9517928 asmbl_40225,asmbl_40228,asmbl_40229 // Retained and Spliced Intron # retained_intron 9517588-9517928 (orient:+) max_ev_support = 2 # spliced_intron 9517588-9517928 (orient:+) max_ev_support = 1 scaffold_3 + intron 9517588-9517928 asmbl_40230 scaffold_3 + retained_intron 9517588-9517928 asmbl_40225,asmbl_40228,asmbl_40229 // Retained and Spliced Intron # retained_intron 9518073-9518444 (orient:+) max_ev_support = 2 # spliced_intron 9518073-9518444 (orient:+) max_ev_support = 3 scaffold_3 + intron 9518073-9518444 asmbl_40226,asmbl_40227,asmbl_40228,asmbl_40229 scaffold_3 + retained_intron 9518073-9518444 asmbl_40225 // Retained and Spliced Intron # retained_intron 9518619-9518734 (orient:+) max_ev_support = 2 # spliced_intron 9518619-9518734 (orient:+) max_ev_support = 3 scaffold_3 + intron 9518619-9518734 asmbl_40226,asmbl_40227,asmbl_40228,asmbl_40229 scaffold_3 + retained_intron 9518619-9518734 asmbl_40225 // Retained and Spliced Intron # retained_intron 9518813-9518999 (orient:+) max_ev_support = 4 # spliced_intron 9518813-9518999 (orient:+) max_ev_support = 3 scaffold_3 + intron 9518813-9518999 asmbl_40227,asmbl_40228,asmbl_40229 scaffold_3 + retained_intron 9518813-9518999 asmbl_40225,asmbl_40226 // Retained and Spliced Intron # retained_intron 9515750-9516729 (orient:+) max_ev_support = 3 # spliced_intron 9515750-9516729 (orient:+) max_ev_support = 3 scaffold_3 + intron 9515750-9516729 asmbl_40225,asmbl_40226,asmbl_40227,asmbl_40229 scaffold_3 + retained_intron 9515750-9516729 asmbl_40228 // Exon Skipping and Retention # skipped_exon 10274721-10275590 (orient:+) max_ev_support = 2 # retained_exon 10275025-10275117 (orient:+) max_ev_support = 2 scaffold_3 + retained_exons 10275025-10275117 asmbl_40247,asmbl_40253,asmbl_40257 scaffold_3 + intron_skips_exon 10274721-10275590 asmbl_40248,asmbl_40251 // Exon Skipping and Retention # skipped_exon 10276182-10277684 (orient:+) max_ev_support = 2 # retained_exon 10276587-10276769 (orient:+) max_ev_support = 2 scaffold_3 + retained_exons 10276587-10276769 asmbl_40247,asmbl_40250 scaffold_3 + intron_skips_exon 10276182-10277684 asmbl_40248,asmbl_40251 // Exon Skipping and Retention # skipped_exon 10275118-10275967 (orient:+) max_ev_support = 2 # retained_exon 10275591-10275683 (orient:+) max_ev_support = 2 scaffold_3 + retained_exons 10275591-10275683 asmbl_40248,asmbl_40251 scaffold_3 + intron_skips_exon 10275118-10275967 asmbl_40247,asmbl_40250,asmbl_40253,asmbl_40256,asmbl_40257 // Retained and Spliced Intron # retained_intron 10274721-10275024 (orient:+) max_ev_support = 1 # spliced_intron 10274721-10275024 (orient:+) max_ev_support = 2 scaffold_3 + intron 10274721-10275024 asmbl_40247,asmbl_40253,asmbl_40257 scaffold_3 + retained_intron 10274721-10275024 asmbl_40250,asmbl_40256 // Retained and Spliced Intron # retained_intron 10276182-10276586 (orient:+) max_ev_support = 1 # spliced_intron 10276182-10276586 (orient:+) max_ev_support = 2 scaffold_3 + intron 10276182-10276586 asmbl_40247,asmbl_40250,asmbl_40253,asmbl_40255,asmbl_40256,asmbl_40257 scaffold_3 + retained_intron 10276182-10276586 asmbl_40252 // Retained and Spliced Intron # retained_intron 10275118-10275967 (orient:+) max_ev_support = 2 # spliced_intron 10275118-10275967 (orient:+) max_ev_support = 2 scaffold_3 + intron 10275118-10275967 asmbl_40247,asmbl_40250,asmbl_40253,asmbl_40256,asmbl_40257 scaffold_3 + retained_intron 10275118-10275967 asmbl_40255 // Retained and Spliced Intron # retained_intron 10275684-10275967 (orient:+) max_ev_support = 2 # spliced_intron 10275684-10275967 (orient:+) max_ev_support = 2 scaffold_3 + intron 10275684-10275967 asmbl_40248,asmbl_40251 scaffold_3 + retained_intron 10275684-10275967 asmbl_40255 // Exon Skipping and Retention # skipped_exon 10296072-10297387 (orient:+) max_ev_support = 2 # retained_exon 10296535-10296612 (orient:+) max_ev_support = 2 scaffold_3 + retained_exons 10296535-10296612 asmbl_40260 scaffold_3 + intron_skips_exon 10296072-10297387 asmbl_40259 // Retained and Spliced Intron # retained_intron 10304998-10305546 (orient:+) max_ev_support = 5 # spliced_intron 10304998-10305546 (orient:+) max_ev_support = 3 scaffold_3 + intron 10304998-10305546 asmbl_40262,asmbl_40265 scaffold_3 + retained_intron 10304998-10305546 asmbl_40261 // Retained and Spliced Intron # retained_intron 10305664-10306094 (orient:+) max_ev_support = 3 # spliced_intron 10305664-10306094 (orient:+) max_ev_support = 3 scaffold_3 + intron 10305664-10306094 asmbl_40262,asmbl_40265 scaffold_3 + retained_intron 10305664-10306094 asmbl_40261 // Retained and Spliced Intron # retained_intron 10302177-10302270 (orient:+) max_ev_support = 2 # spliced_intron 10302177-10302270 (orient:+) max_ev_support = 2 scaffold_3 + intron 10302177-10302270 asmbl_40263 scaffold_3 + retained_intron 10302177-10302270 asmbl_40266 // Exon Skipping and Retention # skipped_exon 10627882-10630201 (orient:+) max_ev_support = 2 # retained_exon 10628153-10628315 (orient:+) max_ev_support = 2 scaffold_3 + retained_exons 10628153-10628315 asmbl_40279 scaffold_3 + intron_skips_exon 10627882-10630201 asmbl_40284 // Retained and Spliced Intron # retained_intron 10628322-10628697 (orient:+) max_ev_support = 1 # spliced_intron 10628322-10628697 (orient:+) max_ev_support = 2 scaffold_3 + intron 10628322-10628697 asmbl_40283,asmbl_40290 scaffold_3 + retained_intron 10628322-10628697 asmbl_40280,asmbl_40281,asmbl_40288 // Retained and Spliced Intron # retained_intron 10628351-10628697 (orient:+) max_ev_support = 1 # spliced_intron 10628351-10628697 (orient:+) max_ev_support = 2 scaffold_3 + intron 10628351-10628697 asmbl_40286,asmbl_40287,asmbl_40289 scaffold_3 + retained_intron 10628351-10628697 asmbl_40280,asmbl_40281,asmbl_40288 // Exon Skipping and Retention # skipped_exon 10628316-10630201 (orient:+) max_ev_support = 2 # retained_exon 10628901-10629296 (orient:+) max_ev_support = 1 scaffold_3 + retained_exons 10628901-10629296 asmbl_40280 scaffold_3 + intron_skips_exon 10628316-10630201 asmbl_40279 // Exon Skipping and Retention # skipped_exon 10628322-10630201 (orient:+) max_ev_support = 1 # retained_exon 10628901-10629296 (orient:+) max_ev_support = 1 scaffold_3 + retained_exons 10628901-10629296 asmbl_40280 scaffold_3 + intron_skips_exon 10628322-10630201 asmbl_40282 // Exon Skipping and Retention # skipped_exon 10628826-10630201 (orient:+) max_ev_support = 2 # retained_exon 10628901-10629296 (orient:+) max_ev_support = 1 scaffold_3 + retained_exons 10628901-10629296 asmbl_40280 scaffold_3 + intron_skips_exon 10628826-10630201 asmbl_40283,asmbl_40289 // Exon Skipping and Retention # skipped_exon 10628322-10630201 (orient:+) max_ev_support = 1 # retained_exon 10629028-10629296 (orient:+) max_ev_support = 2 scaffold_3 + retained_exons 10629028-10629296 asmbl_40281,asmbl_40286,asmbl_40290 scaffold_3 + intron_skips_exon 10628322-10630201 asmbl_40282 // Exon Skipping and Retention # skipped_exon 10628826-10630201 (orient:+) max_ev_support = 2 # retained_exon 10629028-10629296 (orient:+) max_ev_support = 2 scaffold_3 + retained_exons 10629028-10629296 asmbl_40281,asmbl_40286,asmbl_40290 scaffold_3 + intron_skips_exon 10628826-10630201 asmbl_40283,asmbl_40289 // Exon Skipping and Retention # skipped_exon 10628322-10630201 (orient:+) max_ev_support = 1 # retained_exon 10628698-10628825 (orient:+) max_ev_support = 2 scaffold_3 + retained_exons 10628698-10628825 asmbl_40283,asmbl_40289 scaffold_3 + intron_skips_exon 10628322-10630201 asmbl_40282 // Exon Skipping and Retention # skipped_exon 10628322-10630201 (orient:+) max_ev_support = 1 # retained_exon 10628698-10629296 (orient:+) max_ev_support = 2 scaffold_3 + retained_exons 10628698-10628825,10629028-10629296 asmbl_40286,asmbl_40290 scaffold_3 + intron_skips_exon 10628322-10630201 asmbl_40282 // Retained and Spliced Intron # retained_intron 10756104-10756206 (orient:+) max_ev_support = 2 # spliced_intron 10756104-10756206 (orient:+) max_ev_support = 2 scaffold_3 + intron 10756104-10756206 asmbl_40295 scaffold_3 + retained_intron 10756104-10756206 asmbl_40296 // Retained and Spliced Intron # retained_intron 10756336-10756429 (orient:+) max_ev_support = 2 # spliced_intron 10756336-10756429 (orient:+) max_ev_support = 2 scaffold_3 + intron 10756336-10756429 asmbl_40295 scaffold_3 + retained_intron 10756336-10756429 asmbl_40296 // Retained and Spliced Intron # retained_intron 10849045-10849122 (orient:+) max_ev_support = 3 # spliced_intron 10849045-10849122 (orient:+) max_ev_support = 3 scaffold_3 + intron 10849045-10849122 asmbl_40307 scaffold_3 + retained_intron 10849045-10849122 asmbl_40306 // Retained and Spliced Intron # retained_intron 10929425-10929727 (orient:+) max_ev_support = 2 # spliced_intron 10929425-10929727 (orient:+) max_ev_support = 2 scaffold_3 + intron 10929425-10929727 asmbl_40320 scaffold_3 + retained_intron 10929425-10929727 asmbl_40321 // Retained and Spliced Intron # retained_intron 10937871-10938064 (orient:+) max_ev_support = 2 # spliced_intron 10937871-10938064 (orient:+) max_ev_support = 2 scaffold_3 + intron 10937871-10938064 asmbl_40322 scaffold_3 + retained_intron 10937871-10938064 asmbl_40323 // Retained and Spliced Intron # retained_intron 11270000-11270142 (orient:+) max_ev_support = 2 # spliced_intron 11270000-11270142 (orient:+) max_ev_support = 3 scaffold_3 + intron 11270000-11270142 asmbl_40335 scaffold_3 + retained_intron 11270000-11270142 asmbl_40336 // Retained and Spliced Intron # retained_intron 11526115-11526216 (orient:+) max_ev_support = 2 # spliced_intron 11526115-11526216 (orient:+) max_ev_support = 3 scaffold_3 + intron 11526115-11526216 asmbl_40359 scaffold_3 + retained_intron 11526115-11526216 asmbl_40360 // Exon Skipping and Retention # skipped_exon 11644642-11645915 (orient:+) max_ev_support = 1 # retained_exon 11645052-11645162 (orient:+) max_ev_support = 2 scaffold_3 + retained_exons 11645052-11645162 asmbl_40367 scaffold_3 + intron_skips_exon 11644642-11645915 asmbl_40368 // Retained and Spliced Intron # retained_intron 11654136-11654326 (orient:+) max_ev_support = 3 # spliced_intron 11654136-11654326 (orient:+) max_ev_support = 2 scaffold_3 + intron 11654136-11654326 asmbl_40372,asmbl_40373,asmbl_40374 scaffold_3 + retained_intron 11654136-11654326 asmbl_40369,asmbl_40370,asmbl_40371,asmbl_40375 // Exon Skipping and Retention # skipped_exon 11658956-11660776 (orient:+) max_ev_support = 3 # retained_exon 11659462-11659533 (orient:+) max_ev_support = 3 scaffold_3 + retained_exons 11659462-11659533 asmbl_40370,asmbl_40371,asmbl_40374 scaffold_3 + intron_skips_exon 11658956-11660776 asmbl_40369,asmbl_40372,asmbl_40373,asmbl_40375 // Exon Skipping and Retention # skipped_exon 11977944-11980935 (orient:+) max_ev_support = 1 # retained_exon 11978355-11978457 (orient:+) max_ev_support = 3 scaffold_3 + retained_exons 11978355-11978457 asmbl_40383 scaffold_3 + intron_skips_exon 11977944-11980935 asmbl_40385 // Retained and Spliced Intron # retained_intron 11997571-11997651 (orient:+) max_ev_support = 2 # spliced_intron 11997571-11997651 (orient:+) max_ev_support = 1 scaffold_3 + intron 11997571-11997651 asmbl_40389 scaffold_3 + retained_intron 11997571-11997651 asmbl_40388 // Exon Skipping and Retention # skipped_exon 12419601-12421743 (orient:+) max_ev_support = 2 # retained_exon 12421536-12421583 (orient:+) max_ev_support = 2 scaffold_3 + retained_exons 12421536-12421583 asmbl_40399 scaffold_3 + intron_skips_exon 12419601-12421743 asmbl_40400 // Retained and Spliced Intron # retained_intron 12445250-12446860 (orient:+) max_ev_support = 3 # spliced_intron 12445250-12446860 (orient:+) max_ev_support = 1 scaffold_3 + intron 12445250-12446860 asmbl_40404 scaffold_3 + retained_intron 12445250-12446860 asmbl_40403 // Retained and Spliced Intron # retained_intron 12774687-12774814 (orient:+) max_ev_support = 3 # spliced_intron 12774687-12774814 (orient:+) max_ev_support = 1 scaffold_3 + intron 12774687-12774814 asmbl_40415,asmbl_40416 scaffold_3 + retained_intron 12774687-12774814 asmbl_40414 // Retained and Spliced Intron # retained_intron 12773155-12773414 (orient:+) max_ev_support = 3 # spliced_intron 12773155-12773414 (orient:+) max_ev_support = 3 scaffold_3 + intron 12773155-12773414 asmbl_40416 scaffold_3 + retained_intron 12773155-12773414 asmbl_40415 // Retained and Spliced Intron # retained_intron 13160942-13161070 (orient:+) max_ev_support = 1 # spliced_intron 13160942-13161070 (orient:+) max_ev_support = 2 scaffold_3 + intron 13160942-13161070 asmbl_40423,asmbl_40427 scaffold_3 + retained_intron 13160942-13161070 asmbl_40425 // Retained and Spliced Intron # retained_intron 13179330-13179422 (orient:+) max_ev_support = 2 # spliced_intron 13179330-13179422 (orient:+) max_ev_support = 1 scaffold_3 + intron 13179330-13179422 asmbl_40433,asmbl_40434,asmbl_40436,asmbl_40437 scaffold_3 + retained_intron 13179330-13179422 asmbl_40432 // Exon Skipping and Retention # skipped_exon 13176718-13177541 (orient:+) max_ev_support = 1 # retained_exon 13176884-13176898 (orient:+) max_ev_support = 1 scaffold_3 + retained_exons 13176884-13176898 asmbl_40433,asmbl_40434 scaffold_3 + intron_skips_exon 13176718-13177541 asmbl_40436 // Retained and Spliced Intron # retained_intron 13179592-13179723 (orient:+) max_ev_support = 1 # spliced_intron 13179592-13179723 (orient:+) max_ev_support = 1 scaffold_3 + intron 13179592-13179723 asmbl_40434,asmbl_40436,asmbl_40437 scaffold_3 + retained_intron 13179592-13179723 asmbl_40433 // Retained and Spliced Intron # retained_intron 13462730-13462851 (orient:+) max_ev_support = 1 # spliced_intron 13462730-13462851 (orient:+) max_ev_support = 2 scaffold_3 + intron 13462730-13462851 asmbl_40439 scaffold_3 + retained_intron 13462730-13462851 asmbl_40441,asmbl_40442 // Retained and Spliced Intron # retained_intron 13463114-13463211 (orient:+) max_ev_support = 1 # spliced_intron 13463114-13463211 (orient:+) max_ev_support = 2 scaffold_3 + intron 13463114-13463211 asmbl_40439,asmbl_40441 scaffold_3 + retained_intron 13463114-13463211 asmbl_40442 // Retained and Spliced Intron # retained_intron 13702911-13703499 (orient:+) max_ev_support = 2 # spliced_intron 13702911-13703499 (orient:+) max_ev_support = 3 scaffold_3 + intron 13702911-13703499 asmbl_40448,asmbl_40450 scaffold_3 + retained_intron 13702911-13703499 asmbl_40449,asmbl_40451 // Exon Skipping and Retention # skipped_exon 13700565-13703526 (orient:+) max_ev_support = 1 # retained_exon 13702786-13702910 (orient:+) max_ev_support = 2 scaffold_3 + retained_exons 13702786-13702910 asmbl_40450 scaffold_3 + intron_skips_exon 13700565-13703526 asmbl_40452,asmbl_40454 // Retained and Spliced Intron # retained_intron 13703667-13704187 (orient:+) max_ev_support = 2 # spliced_intron 13703667-13704187 (orient:+) max_ev_support = 3 scaffold_3 + intron 13703667-13704187 asmbl_40448,asmbl_40449,asmbl_40450,asmbl_40452,asmbl_40454 scaffold_3 + retained_intron 13703667-13704187 asmbl_40451 // Retained and Spliced Intron # retained_intron 13833535-13833619 (orient:+) max_ev_support = 4 # spliced_intron 13833535-13833619 (orient:+) max_ev_support = 2 scaffold_3 + intron 13833535-13833619 asmbl_40463 scaffold_3 + retained_intron 13833535-13833619 asmbl_40461,asmbl_40462 // Exon Skipping and Retention # skipped_exon 13833535-13836456 (orient:+) max_ev_support = 2 # retained_exon 13833620-13833814 (orient:+) max_ev_support = 2 scaffold_3 + retained_exons 13833620-13833814 asmbl_40463 scaffold_3 + intron_skips_exon 13833535-13836456 asmbl_40464 // Retained and Spliced Intron # retained_intron 13898905-13899019 (orient:+) max_ev_support = 1 # spliced_intron 13898905-13899019 (orient:+) max_ev_support = 2 scaffold_3 + intron 13898905-13899019 asmbl_40467,asmbl_40469 scaffold_3 + retained_intron 13898905-13899019 asmbl_40468 // Retained and Spliced Intron # retained_intron 13899490-13899649 (orient:+) max_ev_support = 1 # spliced_intron 13899490-13899649 (orient:+) max_ev_support = 2 scaffold_3 + intron 13899490-13899649 asmbl_40467,asmbl_40468 scaffold_3 + retained_intron 13899490-13899649 asmbl_40469 // Retained and Spliced Intron # retained_intron 13988445-13988538 (orient:+) max_ev_support = 2 # spliced_intron 13988445-13988538 (orient:+) max_ev_support = 1 scaffold_3 + intron 13988445-13988538 asmbl_40479 scaffold_3 + retained_intron 13988445-13988538 asmbl_40475,asmbl_40476,asmbl_40477,asmbl_40483 // Retained and Spliced Intron # retained_intron 13988803-13989050 (orient:+) max_ev_support = 3 # spliced_intron 13988803-13989050 (orient:+) max_ev_support = 2 scaffold_3 + intron 13988803-13989050 asmbl_40476,asmbl_40479 scaffold_3 + retained_intron 13988803-13989050 asmbl_40475 // Retained and Spliced Intron # retained_intron 13988803-13989079 (orient:+) max_ev_support = 3 # spliced_intron 13988803-13989079 (orient:+) max_ev_support = 2 scaffold_3 + intron 13988803-13989079 asmbl_40477,asmbl_40483 scaffold_3 + retained_intron 13988803-13989079 asmbl_40475 // Retained and Spliced Intron # retained_intron 14048563-14048700 (orient:+) max_ev_support = 2 # spliced_intron 14048563-14048700 (orient:+) max_ev_support = 1 scaffold_3 + intron 14048563-14048700 asmbl_40499 scaffold_3 + retained_intron 14048563-14048700 asmbl_40497 // Retained and Spliced Intron # retained_intron 14259583-14259877 (orient:+) max_ev_support = 2 # spliced_intron 14259583-14259877 (orient:+) max_ev_support = 2 scaffold_3 + intron 14259583-14259877 asmbl_40504 scaffold_3 + retained_intron 14259583-14259877 asmbl_40505,asmbl_40506 // Exon Skipping and Retention # skipped_exon 14331851-14332118 (orient:+) max_ev_support = 1 # retained_exon 14331973-14332041 (orient:+) max_ev_support = 2 scaffold_3 + retained_exons 14331973-14332041 asmbl_40507,asmbl_40509 scaffold_3 + intron_skips_exon 14331851-14332118 asmbl_40508 // Retained and Spliced Intron # retained_intron 14332211-14332313 (orient:+) max_ev_support = 2 # spliced_intron 14332211-14332313 (orient:+) max_ev_support = 1 scaffold_3 + intron 14332211-14332313 asmbl_40509 scaffold_3 + retained_intron 14332211-14332313 asmbl_40507,asmbl_40508 // Retained and Spliced Intron # retained_intron 14424172-14424368 (orient:+) max_ev_support = 4 # spliced_intron 14424172-14424368 (orient:+) max_ev_support = 3 scaffold_3 + intron 14424172-14424368 asmbl_40520,asmbl_40521 scaffold_3 + retained_intron 14424172-14424368 asmbl_40519 // Retained and Spliced Intron # retained_intron 14425017-14426154 (orient:+) max_ev_support = 4 # spliced_intron 14425017-14426154 (orient:+) max_ev_support = 3 scaffold_3 + intron 14425017-14426154 asmbl_40521 scaffold_3 + retained_intron 14425017-14426154 asmbl_40519,asmbl_40520 // Exon Skipping and Retention # skipped_exon 14479533-14479788 (orient:+) max_ev_support = 2 # retained_exon 14479687-14479761 (orient:+) max_ev_support = 2 scaffold_3 + retained_exons 14479687-14479761 asmbl_40528 scaffold_3 + intron_skips_exon 14479533-14479788 asmbl_40527 // Exon Skipping and Retention # skipped_exon 14668755-14671274 (orient:+) max_ev_support = 3 # retained_exon 14670173-14670250 (orient:+) max_ev_support = 3 scaffold_3 + retained_exons 14670173-14670250 asmbl_40541,asmbl_40543 scaffold_3 + intron_skips_exon 14668755-14671274 asmbl_40542 // Retained and Spliced Intron # retained_intron 14844379-14844569 (orient:+) max_ev_support = 1 # spliced_intron 14844379-14844569 (orient:+) max_ev_support = 2 scaffold_3 + intron 14844379-14844569 asmbl_40555 scaffold_3 + retained_intron 14844379-14844569 asmbl_40554 // Retained and Spliced Intron # retained_intron 15573354-15573483 (orient:+) max_ev_support = 1 # spliced_intron 15573354-15573483 (orient:+) max_ev_support = 2 scaffold_3 + intron 15573354-15573483 asmbl_40567,asmbl_40568 scaffold_3 + retained_intron 15573354-15573483 asmbl_40569,asmbl_40570,asmbl_40571 // Retained and Spliced Intron # retained_intron 16038460-16038558 (orient:+) max_ev_support = 1 # spliced_intron 16038460-16038558 (orient:+) max_ev_support = 3 scaffold_3 + intron 16038460-16038558 asmbl_40597 scaffold_3 + retained_intron 16038460-16038558 asmbl_40598 // Retained and Spliced Intron # retained_intron 16072508-16072620 (orient:+) max_ev_support = 1 # spliced_intron 16072508-16072620 (orient:+) max_ev_support = 2 scaffold_3 + intron 16072508-16072620 asmbl_40604,asmbl_40605 scaffold_3 + retained_intron 16072508-16072620 asmbl_40606 // Retained and Spliced Intron # retained_intron 16072508-16072625 (orient:+) max_ev_support = 1 # spliced_intron 16072508-16072625 (orient:+) max_ev_support = 1 scaffold_3 + intron 16072508-16072625 asmbl_40607 scaffold_3 + retained_intron 16072508-16072625 asmbl_40606 // Retained and Spliced Intron # retained_intron 17144430-17144593 (orient:+) max_ev_support = 3 # spliced_intron 17144430-17144593 (orient:+) max_ev_support = 2 scaffold_3 + intron 17144430-17144593 asmbl_40655,asmbl_40656,asmbl_40657,asmbl_40658 scaffold_3 + retained_intron 17144430-17144593 asmbl_40654 // Retained and Spliced Intron # retained_intron 17144659-17145212 (orient:+) max_ev_support = 3 # spliced_intron 17144659-17145212 (orient:+) max_ev_support = 2 scaffold_3 + intron 17144659-17145212 asmbl_40656,asmbl_40657,asmbl_40658 scaffold_3 + retained_intron 17144659-17145212 asmbl_40654,asmbl_40655 // Retained and Spliced Intron # retained_intron 17145299-17145473 (orient:+) max_ev_support = 2 # spliced_intron 17145299-17145473 (orient:+) max_ev_support = 1 scaffold_3 + intron 17145299-17145473 asmbl_40654,asmbl_40658 scaffold_3 + retained_intron 17145299-17145473 asmbl_40655,asmbl_40657 // Retained and Spliced Intron # retained_intron 17455934-17455991 (orient:+) max_ev_support = 3 # spliced_intron 17455934-17455991 (orient:+) max_ev_support = 1 scaffold_3 + intron 17455934-17455991 asmbl_40683 scaffold_3 + retained_intron 17455934-17455991 asmbl_40679,asmbl_40680,asmbl_40682,asmbl_40684 // Retained and Spliced Intron # retained_intron 17456078-17456973 (orient:+) max_ev_support = 2 # spliced_intron 17456078-17456973 (orient:+) max_ev_support = 3 scaffold_3 + intron 17456078-17456973 asmbl_40679,asmbl_40681,asmbl_40683,asmbl_40684 scaffold_3 + retained_intron 17456078-17456973 asmbl_40680,asmbl_40682 // Retained and Spliced Intron # retained_intron 17457148-17457253 (orient:+) max_ev_support = 2 # spliced_intron 17457148-17457253 (orient:+) max_ev_support = 3 scaffold_3 + intron 17457148-17457253 asmbl_40679,asmbl_40681,asmbl_40682,asmbl_40683 scaffold_3 + retained_intron 17457148-17457253 asmbl_40680,asmbl_40684 // Exon Skipping and Retention # skipped_exon 17695398-17696191 (orient:+) max_ev_support = 1 # retained_exon 17695731-17695801 (orient:+) max_ev_support = 2 scaffold_3 + retained_exons 17695731-17695801 asmbl_40689 scaffold_3 + intron_skips_exon 17695398-17696191 asmbl_40690 // Retained and Spliced Intron # retained_intron 17780927-17781032 (orient:+) max_ev_support = 3 # spliced_intron 17780927-17781032 (orient:+) max_ev_support = 1 scaffold_3 + intron 17780927-17781032 asmbl_40694 scaffold_3 + retained_intron 17780927-17781032 asmbl_40692 // Retained and Spliced Intron # retained_intron 17831614-17832488 (orient:+) max_ev_support = 1 # spliced_intron 17831614-17832488 (orient:+) max_ev_support = 2 scaffold_3 + intron 17831614-17832488 asmbl_40698 scaffold_3 + retained_intron 17831614-17832488 asmbl_40699,asmbl_40700 // Retained and Spliced Intron # retained_intron 17845439-17845779 (orient:+) max_ev_support = 1 # spliced_intron 17845439-17845779 (orient:+) max_ev_support = 2 scaffold_3 + intron 17845439-17845779 asmbl_40705 scaffold_3 + retained_intron 17845439-17845779 asmbl_40706,asmbl_40708 // Retained and Spliced Intron # retained_intron 17845439-17845840 (orient:+) max_ev_support = 1 # spliced_intron 17845439-17845840 (orient:+) max_ev_support = 2 scaffold_3 + intron 17845439-17845840 asmbl_40704,asmbl_40707 scaffold_3 + retained_intron 17845439-17845840 asmbl_40706,asmbl_40708 // Retained and Spliced Intron # retained_intron 18733461-18733619 (orient:+) max_ev_support = 1 # spliced_intron 18733461-18733619 (orient:+) max_ev_support = 2 scaffold_3 + intron 18733461-18733619 asmbl_40742 scaffold_3 + retained_intron 18733461-18733619 asmbl_40743 // Retained and Spliced Intron # retained_intron 18947965-18948081 (orient:+) max_ev_support = 1 # spliced_intron 18947965-18948081 (orient:+) max_ev_support = 2 scaffold_3 + intron 18947965-18948081 asmbl_40754 scaffold_3 + retained_intron 18947965-18948081 asmbl_40755 // Exon Skipping and Retention # skipped_exon 19802510-19803682 (orient:+) max_ev_support = 1 # retained_exon 19803452-19803532 (orient:+) max_ev_support = 2 scaffold_3 + retained_exons 19803452-19803532 asmbl_40772 scaffold_3 + intron_skips_exon 19802510-19803682 asmbl_40773,asmbl_40774,asmbl_40775 // Retained and Spliced Intron # retained_intron 1280-1585 (orient:+) max_ev_support = 2 # spliced_intron 1280-1585 (orient:+) max_ev_support = 2 scaffold_300 + intron 1280-1585 asmbl_40903 scaffold_300 + retained_intron 1280-1585 asmbl_40902 // Retained and Spliced Intron # retained_intron 1280-1588 (orient:+) max_ev_support = 2 # spliced_intron 1280-1588 (orient:+) max_ev_support = 1 scaffold_300 + intron 1280-1588 asmbl_40904 scaffold_300 + retained_intron 1280-1588 asmbl_40902 // Retained and Spliced Intron # retained_intron 2945-3159 (orient:+) max_ev_support = 1 # spliced_intron 2945-3159 (orient:+) max_ev_support = 2 scaffold_300 + intron 2945-3159 asmbl_40902,asmbl_40903,asmbl_40904,asmbl_40905 scaffold_300 + retained_intron 2945-3159 asmbl_40906 // Retained and Spliced Intron # retained_intron 358-614 (orient:+) max_ev_support = 2 # spliced_intron 358-614 (orient:+) max_ev_support = 1 scaffold_3026 + intron 358-614 asmbl_40913 scaffold_3026 + retained_intron 358-614 asmbl_40912 // Retained and Spliced Intron # retained_intron 362-614 (orient:+) max_ev_support = 2 # spliced_intron 362-614 (orient:+) max_ev_support = 1 scaffold_3026 + intron 362-614 asmbl_40914 scaffold_3026 + retained_intron 362-614 asmbl_40912 // Retained and Spliced Intron # retained_intron 488-641 (orient:-) max_ev_support = 3 # spliced_intron 488-641 (orient:-) max_ev_support = 1 scaffold_3030 - intron 488-641 asmbl_40916 scaffold_3030 - retained_intron 488-641 asmbl_40915 // Retained and Spliced Intron # retained_intron 806-1026 (orient:+) max_ev_support = 1 # spliced_intron 806-1026 (orient:+) max_ev_support = 1 scaffold_321 + intron 806-1026 asmbl_40960 scaffold_321 + retained_intron 806-1026 asmbl_40961 // Retained and Spliced Intron # retained_intron 608-748 (orient:+) max_ev_support = 3 # spliced_intron 608-748 (orient:+) max_ev_support = 1 scaffold_322 + intron 608-748 asmbl_40963 scaffold_322 + retained_intron 608-748 asmbl_40962 // Retained and Spliced Intron # retained_intron 6549-6737 (orient:-) max_ev_support = 2 # spliced_intron 6549-6737 (orient:-) max_ev_support = 1 scaffold_322 - intron 6549-6737 asmbl_40973 scaffold_322 - retained_intron 6549-6737 asmbl_40971 // Retained and Spliced Intron # retained_intron 6574-6737 (orient:-) max_ev_support = 2 # spliced_intron 6574-6737 (orient:-) max_ev_support = 1 scaffold_322 - intron 6574-6737 asmbl_40972 scaffold_322 - retained_intron 6574-6737 asmbl_40971 // Retained and Spliced Intron # retained_intron 2802-2916 (orient:+) max_ev_support = 3 # spliced_intron 2802-2916 (orient:+) max_ev_support = 1 scaffold_340 + intron 2802-2916 asmbl_41011,asmbl_41012,asmbl_41015 scaffold_340 + retained_intron 2802-2916 asmbl_41010 // Retained and Spliced Intron # retained_intron 2802-2919 (orient:+) max_ev_support = 3 # spliced_intron 2802-2919 (orient:+) max_ev_support = 1 scaffold_340 + intron 2802-2919 asmbl_41014 scaffold_340 + retained_intron 2802-2919 asmbl_41010 // Retained and Spliced Intron # retained_intron 2968-3178 (orient:+) max_ev_support = 3 # spliced_intron 2968-3178 (orient:+) max_ev_support = 1 scaffold_340 + intron 2968-3178 asmbl_41011,asmbl_41014,asmbl_41015 scaffold_340 + retained_intron 2968-3178 asmbl_41010,asmbl_41012 // Retained and Spliced Intron # retained_intron 3284-3408 (orient:+) max_ev_support = 5 # spliced_intron 3284-3408 (orient:+) max_ev_support = 1 scaffold_340 + intron 3284-3408 asmbl_41014,asmbl_41015 scaffold_340 + retained_intron 3284-3408 asmbl_41010,asmbl_41011,asmbl_41012 // Retained and Spliced Intron # retained_intron 809-1024 (orient:+) max_ev_support = 2 # spliced_intron 809-1024 (orient:+) max_ev_support = 1 scaffold_340 + intron 809-1024 asmbl_41014 scaffold_340 + retained_intron 809-1024 asmbl_41013,asmbl_41015 // Retained and Spliced Intron # retained_intron 809-1149 (orient:+) max_ev_support = 2 # spliced_intron 809-1149 (orient:+) max_ev_support = 1 scaffold_340 + intron 809-1149 asmbl_41010,asmbl_41011,asmbl_41012 scaffold_340 + retained_intron 809-1149 asmbl_41013,asmbl_41015 // Retained and Spliced Intron # retained_intron 4207-4444 (orient:+) max_ev_support = 1 # spliced_intron 4207-4444 (orient:+) max_ev_support = 1 scaffold_340 + intron 4207-4444 asmbl_41018 scaffold_340 + retained_intron 4207-4444 asmbl_41017 // Retained and Spliced Intron # retained_intron 1680-1727 (orient:+) max_ev_support = 1 # spliced_intron 1680-1727 (orient:+) max_ev_support = 1 scaffold_369 + intron 1680-1727 asmbl_41051 scaffold_369 + retained_intron 1680-1727 asmbl_41052 // Retained and Spliced Intron # retained_intron 1752-1811 (orient:+) max_ev_support = 1 # spliced_intron 1752-1811 (orient:+) max_ev_support = 1 scaffold_369 + intron 1752-1811 asmbl_41051 scaffold_369 + retained_intron 1752-1811 asmbl_41052 // Exon Skipping and Retention # skipped_exon 3031-4016 (orient:-) max_ev_support = 2 # retained_exon 3388-3594 (orient:-) max_ev_support = 2 scaffold_395 - retained_exons 3388-3594 asmbl_41075 scaffold_395 - intron_skips_exon 3031-4016 asmbl_41076 // Exon Skipping and Retention # skipped_exon 1391-3387 (orient:-) max_ev_support = 2 # retained_exon 2824-3030 (orient:-) max_ev_support = 2 scaffold_395 - retained_exons 2824-3030 asmbl_41076 scaffold_395 - intron_skips_exon 1391-3387 asmbl_41075 // Retained and Spliced Intron # retained_intron 158350-158690 (orient:+) max_ev_support = 4 # spliced_intron 158350-158690 (orient:+) max_ev_support = 2 scaffold_4 + intron 158350-158690 asmbl_41088 scaffold_4 + retained_intron 158350-158690 asmbl_41087 // Exon Skipping and Retention # skipped_exon 247323-249396 (orient:+) max_ev_support = 1 # retained_exon 248696-248852 (orient:+) max_ev_support = 1 scaffold_4 + retained_exons 248696-248852 asmbl_41092 scaffold_4 + intron_skips_exon 247323-249396 asmbl_41093 // Exon Skipping and Retention # skipped_exon 246127-248695 (orient:+) max_ev_support = 1 # retained_exon 247166-247322 (orient:+) max_ev_support = 1 scaffold_4 + retained_exons 247166-247322 asmbl_41093 scaffold_4 + intron_skips_exon 246127-248695 asmbl_41092 // Retained and Spliced Intron # retained_intron 1307873-1308003 (orient:+) max_ev_support = 3 # spliced_intron 1307873-1308003 (orient:+) max_ev_support = 2 scaffold_4 + intron 1307873-1308003 asmbl_41105 scaffold_4 + retained_intron 1307873-1308003 asmbl_41104 // Retained and Spliced Intron # retained_intron 1618801-1618830 (orient:+) max_ev_support = 1 # spliced_intron 1618801-1618830 (orient:+) max_ev_support = 1 scaffold_4 + intron 1618801-1618830 asmbl_41117 scaffold_4 + retained_intron 1618801-1618830 asmbl_41118 // Exon Skipping and Retention # skipped_exon 1877027-1879616 (orient:+) max_ev_support = 2 # retained_exon 1877964-1878008 (orient:+) max_ev_support = 2 scaffold_4 + retained_exons 1877964-1878008 asmbl_41133 scaffold_4 + intron_skips_exon 1877027-1879616 asmbl_41134 // Retained and Spliced Intron # retained_intron 1969732-1969832 (orient:+) max_ev_support = 3 # spliced_intron 1969732-1969832 (orient:+) max_ev_support = 3 scaffold_4 + intron 1969732-1969832 asmbl_41146 scaffold_4 + retained_intron 1969732-1969832 asmbl_41147 // Exon Skipping and Retention # skipped_exon 3340468-3342662 (orient:+) max_ev_support = 1 # retained_exon 3341413-3341484 (orient:+) max_ev_support = 3 scaffold_4 + retained_exons 3341413-3341484 asmbl_41179 scaffold_4 + intron_skips_exon 3340468-3342662 asmbl_41180 // Retained and Spliced Intron # retained_intron 3383632-3383773 (orient:+) max_ev_support = 1 # spliced_intron 3383632-3383773 (orient:+) max_ev_support = 2 scaffold_4 + intron 3383632-3383773 asmbl_41188,asmbl_41189,asmbl_41192 scaffold_4 + retained_intron 3383632-3383773 asmbl_41193,asmbl_41194 // Retained and Spliced Intron # retained_intron 3383834-3383996 (orient:+) max_ev_support = 1 # spliced_intron 3383834-3383996 (orient:+) max_ev_support = 2 scaffold_4 + intron 3383834-3383996 asmbl_41188 scaffold_4 + retained_intron 3383834-3383996 asmbl_41195 // Retained and Spliced Intron # retained_intron 3383834-3384084 (orient:+) max_ev_support = 1 # spliced_intron 3383834-3384084 (orient:+) max_ev_support = 2 scaffold_4 + intron 3383834-3384084 asmbl_41189,asmbl_41192,asmbl_41193,asmbl_41194 scaffold_4 + retained_intron 3383834-3384084 asmbl_41195 // Retained and Spliced Intron # retained_intron 4051130-4051203 (orient:+) max_ev_support = 2 # spliced_intron 4051130-4051203 (orient:+) max_ev_support = 3 scaffold_4 + intron 4051130-4051203 asmbl_41210 scaffold_4 + retained_intron 4051130-4051203 asmbl_41211 // Exon Skipping and Retention # skipped_exon 4096133-4096603 (orient:+) max_ev_support = 1 # retained_exon 4096330-4096420 (orient:+) max_ev_support = 2 scaffold_4 + retained_exons 4096330-4096420 asmbl_41217,asmbl_41218,asmbl_41219,asmbl_41220,asmbl_41221,asmbl_41229 scaffold_4 + intron_skips_exon 4096133-4096603 asmbl_41227 // Retained and Spliced Intron # retained_intron 4095323-4095811 (orient:+) max_ev_support = 1 # spliced_intron 4095323-4095811 (orient:+) max_ev_support = 2 scaffold_4 + intron 4095323-4095811 asmbl_41217,asmbl_41221 scaffold_4 + retained_intron 4095323-4095811 asmbl_41220,asmbl_41227,asmbl_41229 // Retained and Spliced Intron # retained_intron 4095323-4095843 (orient:+) max_ev_support = 1 # spliced_intron 4095323-4095843 (orient:+) max_ev_support = 2 scaffold_4 + intron 4095323-4095843 asmbl_41218 scaffold_4 + retained_intron 4095323-4095843 asmbl_41220,asmbl_41227,asmbl_41229 // Retained and Spliced Intron # retained_intron 4095323-4095985 (orient:+) max_ev_support = 1 # spliced_intron 4095323-4095985 (orient:+) max_ev_support = 2 scaffold_4 + intron 4095323-4095985 asmbl_41219 scaffold_4 + retained_intron 4095323-4095985 asmbl_41220,asmbl_41227,asmbl_41229 // Retained and Spliced Intron # retained_intron 4094067-4094177 (orient:+) max_ev_support = 2 # spliced_intron 4094067-4094177 (orient:+) max_ev_support = 2 scaffold_4 + intron 4094067-4094177 asmbl_41217,asmbl_41218,asmbl_41219,asmbl_41220,asmbl_41224,asmbl_41228 scaffold_4 + retained_intron 4094067-4094177 asmbl_41221,asmbl_41222 // Retained and Spliced Intron # retained_intron 4099761-4100917 (orient:+) max_ev_support = 3 # spliced_intron 4099761-4100917 (orient:+) max_ev_support = 1 scaffold_4 + intron 4099761-4100917 asmbl_41231,asmbl_41232 scaffold_4 + retained_intron 4099761-4100917 asmbl_41230 // Retained and Spliced Intron # retained_intron 4103311-4103635 (orient:+) max_ev_support = 7 # spliced_intron 4103311-4103635 (orient:+) max_ev_support = 1 scaffold_4 + intron 4103311-4103635 asmbl_41231,asmbl_41232 scaffold_4 + retained_intron 4103311-4103635 asmbl_41230 // Retained and Spliced Intron # retained_intron 4103839-4104240 (orient:+) max_ev_support = 5 # spliced_intron 4103839-4104240 (orient:+) max_ev_support = 1 scaffold_4 + intron 4103839-4104240 asmbl_41231,asmbl_41232 scaffold_4 + retained_intron 4103839-4104240 asmbl_41230 // Retained and Spliced Intron # retained_intron 4104440-4104704 (orient:+) max_ev_support = 3 # spliced_intron 4104440-4104704 (orient:+) max_ev_support = 1 scaffold_4 + intron 4104440-4104704 asmbl_41232 scaffold_4 + retained_intron 4104440-4104704 asmbl_41230,asmbl_41231 // Retained and Spliced Intron # retained_intron 4104938-4105082 (orient:+) max_ev_support = 1 # spliced_intron 4104938-4105082 (orient:+) max_ev_support = 1 scaffold_4 + intron 4104938-4105082 asmbl_41232 scaffold_4 + retained_intron 4104938-4105082 asmbl_41230 // Retained and Spliced Intron # retained_intron 4102190-4102272 (orient:+) max_ev_support = 1 # spliced_intron 4102190-4102272 (orient:+) max_ev_support = 1 scaffold_4 + intron 4102190-4102272 asmbl_41230,asmbl_41232 scaffold_4 + retained_intron 4102190-4102272 asmbl_41231 // Retained and Spliced Intron # retained_intron 4371150-4371554 (orient:+) max_ev_support = 1 # spliced_intron 4371150-4371554 (orient:+) max_ev_support = 2 scaffold_4 + intron 4371150-4371554 asmbl_41240,asmbl_41242 scaffold_4 + retained_intron 4371150-4371554 asmbl_41241 // Retained and Spliced Intron # retained_intron 4413750-4414043 (orient:+) max_ev_support = 4 # spliced_intron 4413750-4414043 (orient:+) max_ev_support = 2 scaffold_4 + intron 4413750-4414043 asmbl_41245,asmbl_41255,asmbl_41262 scaffold_4 + retained_intron 4413750-4414043 asmbl_41244 // Retained and Spliced Intron # retained_intron 4414352-4414502 (orient:+) max_ev_support = 3 # spliced_intron 4414352-4414502 (orient:+) max_ev_support = 1 scaffold_4 + intron 4414352-4414502 asmbl_41245,asmbl_41260 scaffold_4 + retained_intron 4414352-4414502 asmbl_41244,asmbl_41262 // Exon Skipping and Retention # skipped_exon 4413750-4415344 (orient:+) max_ev_support = 2 # retained_exon 4414044-4414706 (orient:+) max_ev_support = 3 scaffold_4 + retained_exons 4414044-4414351,4414503-4414706 asmbl_41245 scaffold_4 + intron_skips_exon 4413750-4415344 asmbl_41254 // Exon Skipping and Retention # skipped_exon 4414071-4415344 (orient:+) max_ev_support = 2 # retained_exon 4414503-4414706 (orient:+) max_ev_support = 3 scaffold_4 + retained_exons 4414503-4414706 asmbl_41245 scaffold_4 + intron_skips_exon 4414071-4415344 asmbl_41250,asmbl_41255,asmbl_41258 // Retained and Spliced Intron # retained_intron 4417120-4417266 (orient:+) max_ev_support = 2 # spliced_intron 4417120-4417266 (orient:+) max_ev_support = 3 scaffold_4 + intron 4417120-4417266 asmbl_41244,asmbl_41245,asmbl_41246,asmbl_41254,asmbl_41255,asmbl_41257,asmbl_41258,asmbl_41261 scaffold_4 + retained_intron 4417120-4417266 asmbl_41249,asmbl_41250,asmbl_41256 // Retained and Spliced Intron # retained_intron 4415761-4416396 (orient:+) max_ev_support = 2 # spliced_intron 4415761-4416396 (orient:+) max_ev_support = 3 scaffold_4 + intron 4415761-4416396 asmbl_41244,asmbl_41245,asmbl_41246,asmbl_41248,asmbl_41249,asmbl_41254,asmbl_41255,asmbl_41258 scaffold_4 + retained_intron 4415761-4416396 asmbl_41250,asmbl_41256,asmbl_41257,asmbl_41259,asmbl_41261 // Retained and Spliced Intron # retained_intron 4416472-4417029 (orient:+) max_ev_support = 2 # spliced_intron 4416472-4417029 (orient:+) max_ev_support = 2 scaffold_4 + intron 4416472-4417029 asmbl_41249 scaffold_4 + retained_intron 4416472-4417029 asmbl_41250,asmbl_41256,asmbl_41257,asmbl_41261 // Retained and Spliced Intron # retained_intron 4416472-4417089 (orient:+) max_ev_support = 2 # spliced_intron 4416472-4417089 (orient:+) max_ev_support = 3 scaffold_4 + intron 4416472-4417089 asmbl_41244,asmbl_41245,asmbl_41246,asmbl_41254,asmbl_41255,asmbl_41258,asmbl_41259 scaffold_4 + retained_intron 4416472-4417089 asmbl_41250,asmbl_41256,asmbl_41257,asmbl_41261 // Retained and Spliced Intron # retained_intron 4417303-4417393 (orient:+) max_ev_support = 2 # spliced_intron 4417303-4417393 (orient:+) max_ev_support = 3 scaffold_4 + intron 4417303-4417393 asmbl_41244,asmbl_41245,asmbl_41246,asmbl_41249,asmbl_41254,asmbl_41255,asmbl_41258,asmbl_41261 scaffold_4 + retained_intron 4417303-4417393 asmbl_41250,asmbl_41256,asmbl_41257 // Retained and Spliced Intron # retained_intron 4417425-4417532 (orient:+) max_ev_support = 2 # spliced_intron 4417425-4417532 (orient:+) max_ev_support = 3 scaffold_4 + intron 4417425-4417532 asmbl_41244,asmbl_41245,asmbl_41246,asmbl_41249,asmbl_41254,asmbl_41255,asmbl_41256,asmbl_41258,asmbl_41261 scaffold_4 + retained_intron 4417425-4417532 asmbl_41250,asmbl_41257 // Retained and Spliced Intron # retained_intron 4414707-4415344 (orient:+) max_ev_support = 1 # spliced_intron 4414707-4415344 (orient:+) max_ev_support = 3 scaffold_4 + intron 4414707-4415344 asmbl_41244,asmbl_41245,asmbl_41249,asmbl_41259 scaffold_4 + retained_intron 4414707-4415344 asmbl_41256,asmbl_41257,asmbl_41261 // Retained and Spliced Intron # retained_intron 4414847-4415344 (orient:+) max_ev_support = 1 # spliced_intron 4414847-4415344 (orient:+) max_ev_support = 2 scaffold_4 + intron 4414847-4415344 asmbl_41248 scaffold_4 + retained_intron 4414847-4415344 asmbl_41256,asmbl_41257,asmbl_41261 // Retained and Spliced Intron # retained_intron 4433640-4433862 (orient:+) max_ev_support = 2 # spliced_intron 4433640-4433862 (orient:+) max_ev_support = 2 scaffold_4 + intron 4433640-4433862 asmbl_41268,asmbl_41269 scaffold_4 + retained_intron 4433640-4433862 asmbl_41267 // Retained and Spliced Intron # retained_intron 4433714-4433862 (orient:+) max_ev_support = 2 # spliced_intron 4433714-4433862 (orient:+) max_ev_support = 1 scaffold_4 + intron 4433714-4433862 asmbl_41270 scaffold_4 + retained_intron 4433714-4433862 asmbl_41267 // Retained and Spliced Intron # retained_intron 4449410-4449595 (orient:+) max_ev_support = 2 # spliced_intron 4449410-4449595 (orient:+) max_ev_support = 3 scaffold_4 + intron 4449410-4449595 asmbl_41273 scaffold_4 + retained_intron 4449410-4449595 asmbl_41274 // Retained and Spliced Intron # retained_intron 4451696-4451771 (orient:+) max_ev_support = 1 # spliced_intron 4451696-4451771 (orient:+) max_ev_support = 1 scaffold_4 + intron 4451696-4451771 asmbl_41275 scaffold_4 + retained_intron 4451696-4451771 asmbl_41276,asmbl_41278 // Exon Skipping and Retention # skipped_exon 4551331-4552859 (orient:+) max_ev_support = 2 # retained_exon 4551832-4551855 (orient:+) max_ev_support = 2 scaffold_4 + retained_exons 4551832-4551855 asmbl_41288 scaffold_4 + intron_skips_exon 4551331-4552859 asmbl_41287 // Retained and Spliced Intron # retained_intron 4692423-4692526 (orient:+) max_ev_support = 1 # spliced_intron 4692423-4692526 (orient:+) max_ev_support = 1 scaffold_4 + intron 4692423-4692526 asmbl_41296,asmbl_41298,asmbl_41299,asmbl_41300,asmbl_41301,asmbl_41302,asmbl_41303 scaffold_4 + retained_intron 4692423-4692526 asmbl_41297 // Retained and Spliced Intron # retained_intron 4692582-4692952 (orient:+) max_ev_support = 1 # spliced_intron 4692582-4692952 (orient:+) max_ev_support = 1 scaffold_4 + intron 4692582-4692952 asmbl_41296,asmbl_41298,asmbl_41299,asmbl_41301,asmbl_41302,asmbl_41303 scaffold_4 + retained_intron 4692582-4692952 asmbl_41297,asmbl_41300 // Retained and Spliced Intron # retained_intron 4691873-4692128 (orient:+) max_ev_support = 1 # spliced_intron 4691873-4692128 (orient:+) max_ev_support = 1 scaffold_4 + intron 4691873-4692128 asmbl_41296,asmbl_41297,asmbl_41298,asmbl_41300,asmbl_41301,asmbl_41303 scaffold_4 + retained_intron 4691873-4692128 asmbl_41299,asmbl_41302 // Retained and Spliced Intron # retained_intron 4691328-4691558 (orient:+) max_ev_support = 1 # spliced_intron 4691328-4691558 (orient:+) max_ev_support = 1 scaffold_4 + intron 4691328-4691558 asmbl_41296,asmbl_41297,asmbl_41298,asmbl_41299,asmbl_41300,asmbl_41301,asmbl_41302 scaffold_4 + retained_intron 4691328-4691558 asmbl_41303 // Retained and Spliced Intron # retained_intron 4912273-4912392 (orient:+) max_ev_support = 2 # spliced_intron 4912273-4912392 (orient:+) max_ev_support = 1 scaffold_4 + intron 4912273-4912392 asmbl_41314,asmbl_41317 scaffold_4 + retained_intron 4912273-4912392 asmbl_41313,asmbl_41316 // Retained and Spliced Intron # retained_intron 4911794-4911995 (orient:+) max_ev_support = 2 # spliced_intron 4911794-4911995 (orient:+) max_ev_support = 2 scaffold_4 + intron 4911794-4911995 asmbl_41313,asmbl_41314 scaffold_4 + retained_intron 4911794-4911995 asmbl_41316,asmbl_41317 // Exon Skipping and Retention # skipped_exon 4922110-4923378 (orient:+) max_ev_support = 1 # retained_exon 4922781-4922890 (orient:+) max_ev_support = 2 scaffold_4 + retained_exons 4922781-4922890 asmbl_41319,asmbl_41321 scaffold_4 + intron_skips_exon 4922110-4923378 asmbl_41320 // Exon Skipping and Retention # skipped_exon 5677456-5678803 (orient:+) max_ev_support = 2 # retained_exon 5677972-5678066 (orient:+) max_ev_support = 1 scaffold_4 + retained_exons 5677972-5678066 asmbl_41366 scaffold_4 + intron_skips_exon 5677456-5678803 asmbl_41365 // Retained and Spliced Intron # retained_intron 5832068-5832537 (orient:+) max_ev_support = 1 # spliced_intron 5832068-5832537 (orient:+) max_ev_support = 1 scaffold_4 + intron 5832068-5832537 asmbl_41372 scaffold_4 + retained_intron 5832068-5832537 asmbl_41373,asmbl_41374 // Retained and Spliced Intron # retained_intron 6247748-6247873 (orient:+) max_ev_support = 2 # spliced_intron 6247748-6247873 (orient:+) max_ev_support = 2 scaffold_4 + intron 6247748-6247873 asmbl_41381 scaffold_4 + retained_intron 6247748-6247873 asmbl_41380,asmbl_41382,asmbl_41383 // Retained and Spliced Intron # retained_intron 6294036-6294226 (orient:+) max_ev_support = 1 # spliced_intron 6294036-6294226 (orient:+) max_ev_support = 2 scaffold_4 + intron 6294036-6294226 asmbl_41387 scaffold_4 + retained_intron 6294036-6294226 asmbl_41388 // Retained and Spliced Intron # retained_intron 6304427-6304811 (orient:+) max_ev_support = 3 # spliced_intron 6304427-6304811 (orient:+) max_ev_support = 3 scaffold_4 + intron 6304427-6304811 asmbl_41389,asmbl_41393,asmbl_41394 scaffold_4 + retained_intron 6304427-6304811 asmbl_41390,asmbl_41391,asmbl_41395 // Retained and Spliced Intron # retained_intron 6304956-6305145 (orient:+) max_ev_support = 3 # spliced_intron 6304956-6305145 (orient:+) max_ev_support = 3 scaffold_4 + intron 6304956-6305145 asmbl_41389,asmbl_41394 scaffold_4 + retained_intron 6304956-6305145 asmbl_41390,asmbl_41391,asmbl_41393,asmbl_41395 // Retained and Spliced Intron # retained_intron 6303061-6303375 (orient:+) max_ev_support = 2 # spliced_intron 6303061-6303375 (orient:+) max_ev_support = 3 scaffold_4 + intron 6303061-6303375 asmbl_41389,asmbl_41390,asmbl_41391,asmbl_41394,asmbl_41395 scaffold_4 + retained_intron 6303061-6303375 asmbl_41392 // Retained and Spliced Intron # retained_intron 6300650-6300748 (orient:+) max_ev_support = 1 # spliced_intron 6300650-6300748 (orient:+) max_ev_support = 3 scaffold_4 + intron 6300650-6300748 asmbl_41389,asmbl_41390 scaffold_4 + retained_intron 6300650-6300748 asmbl_41394,asmbl_41395 // Retained and Spliced Intron # retained_intron 6300842-6302966 (orient:+) max_ev_support = 1 # spliced_intron 6300842-6302966 (orient:+) max_ev_support = 3 scaffold_4 + intron 6300842-6302966 asmbl_41389,asmbl_41390,asmbl_41391 scaffold_4 + retained_intron 6300842-6302966 asmbl_41394,asmbl_41395 // Retained and Spliced Intron # retained_intron 6332069-6332164 (orient:+) max_ev_support = 3 # spliced_intron 6332069-6332164 (orient:+) max_ev_support = 2 scaffold_4 + intron 6332069-6332164 asmbl_41397 scaffold_4 + retained_intron 6332069-6332164 asmbl_41396 // Exon Skipping and Retention # skipped_exon 6704324-6705681 (orient:+) max_ev_support = 1 # retained_exon 6704806-6705397 (orient:+) max_ev_support = 2 scaffold_4 + retained_exons 6704806-6705141,6705271-6705397 asmbl_41422 scaffold_4 + retained_exons 6704806-6705013,6705100-6705141,6705271-6705397 asmbl_41423 scaffold_4 + intron_skips_exon 6704324-6705681 asmbl_41424 // Retained and Spliced Intron # retained_intron 6705014-6705099 (orient:+) max_ev_support = 2 # spliced_intron 6705014-6705099 (orient:+) max_ev_support = 1 scaffold_4 + intron 6705014-6705099 asmbl_41423 scaffold_4 + retained_intron 6705014-6705099 asmbl_41422 // Exon Skipping and Retention # skipped_exon 6947237-6947567 (orient:+) max_ev_support = 1 # retained_exon 6947400-6947441 (orient:+) max_ev_support = 2 scaffold_4 + retained_exons 6947400-6947441 asmbl_41432,asmbl_41433 scaffold_4 + intron_skips_exon 6947237-6947567 asmbl_41434,asmbl_41435 // Retained and Spliced Intron # retained_intron 6949321-6949391 (orient:+) max_ev_support = 3 # spliced_intron 6949321-6949391 (orient:+) max_ev_support = 3 scaffold_4 + intron 6949321-6949391 asmbl_41432,asmbl_41433 scaffold_4 + retained_intron 6949321-6949391 asmbl_41434,asmbl_41435,asmbl_41436 // Exon Skipping and Retention # skipped_exon 7032456-7034797 (orient:+) max_ev_support = 1 # retained_exon 7033834-7033980 (orient:+) max_ev_support = 1 scaffold_4 + retained_exons 7033834-7033980 asmbl_41449 scaffold_4 + intron_skips_exon 7032456-7034797 asmbl_41448 // Retained and Spliced Intron # retained_intron 7090140-7091175 (orient:+) max_ev_support = 2 # spliced_intron 7090140-7091175 (orient:+) max_ev_support = 2 scaffold_4 + intron 7090140-7091175 asmbl_41460 scaffold_4 + retained_intron 7090140-7091175 asmbl_41459 // Retained and Spliced Intron # retained_intron 7090983-7091175 (orient:+) max_ev_support = 1 # spliced_intron 7090983-7091175 (orient:+) max_ev_support = 1 scaffold_4 + intron 7090983-7091175 asmbl_41458,asmbl_41461 scaffold_4 + retained_intron 7090983-7091175 asmbl_41459 // Exon Skipping and Retention # skipped_exon 7150686-7151689 (orient:+) max_ev_support = 1 # retained_exon 7150796-7150899 (orient:+) max_ev_support = 1 scaffold_4 + retained_exons 7150796-7150899 asmbl_41470,asmbl_41471,asmbl_41465,asmbl_41466 scaffold_4 + intron_skips_exon 7150686-7151689 asmbl_41469,asmbl_41468 // Exon Skipping and Retention # skipped_exon 7150686-7152429 (orient:+) max_ev_support = 1 # retained_exon 7150796-7151997 (orient:+) max_ev_support = 1 scaffold_4 + retained_exons 7150796-7150899,7151965-7151997 asmbl_41465,asmbl_41466 scaffold_4 + intron_skips_exon 7150686-7151689 asmbl_41468 scaffold_4 + intron_skips_exon 7151794-7152429 asmbl_41468 // Exon Skipping and Retention # skipped_exon 7151104-7152429 (orient:+) max_ev_support = 1 # retained_exon 7151965-7151997 (orient:+) max_ev_support = 1 scaffold_4 + retained_exons 7151965-7151997 asmbl_41465,asmbl_41466,asmbl_41469 scaffold_4 + intron_skips_exon 7151104-7152429 asmbl_41467 // Exon Skipping and Retention # skipped_exon 7150900-7152429 (orient:+) max_ev_support = 1 # retained_exon 7151965-7151997 (orient:+) max_ev_support = 1 scaffold_4 + retained_exons 7151965-7151997 asmbl_41465,asmbl_41466,asmbl_41469 scaffold_4 + intron_skips_exon 7150900-7152429 asmbl_41470,asmbl_41471 // Exon Skipping and Retention # skipped_exon 7154144-7154943 (orient:+) max_ev_support = 1 # retained_exon 7154530-7154765 (orient:+) max_ev_support = 1 scaffold_4 + retained_exons 7154530-7154765 asmbl_41465,asmbl_41468,asmbl_41470 scaffold_4 + intron_skips_exon 7154144-7154943 asmbl_41466,asmbl_41467,asmbl_41469,asmbl_41471 // Exon Skipping and Retention # skipped_exon 7150686-7151689 (orient:+) max_ev_support = 1 # retained_exon 7150796-7151103 (orient:+) max_ev_support = 1 scaffold_4 + retained_exons 7150796-7150899,7151071-7151103 asmbl_41467 scaffold_4 + intron_skips_exon 7150686-7151689 asmbl_41469,asmbl_41468 // Exon Skipping and Retention # skipped_exon 7150900-7151964 (orient:+) max_ev_support = 1 # retained_exon 7151071-7151103 (orient:+) max_ev_support = 1 scaffold_4 + retained_exons 7151071-7151103 asmbl_41467 scaffold_4 + intron_skips_exon 7150900-7151964 asmbl_41465,asmbl_41466 // Exon Skipping and Retention # skipped_exon 7150900-7152429 (orient:+) max_ev_support = 1 # retained_exon 7151071-7151103 (orient:+) max_ev_support = 1 scaffold_4 + retained_exons 7151071-7151103 asmbl_41467 scaffold_4 + intron_skips_exon 7150900-7152429 asmbl_41470,asmbl_41471 // Exon Skipping and Retention # skipped_exon 7150900-7152429 (orient:+) max_ev_support = 1 # retained_exon 7151690-7151793 (orient:+) max_ev_support = 1 scaffold_4 + retained_exons 7151690-7151793 asmbl_41468,asmbl_41469 scaffold_4 + intron_skips_exon 7150900-7152429 asmbl_41470,asmbl_41471 // Exon Skipping and Retention # skipped_exon 7150900-7151964 (orient:+) max_ev_support = 1 # retained_exon 7151690-7151793 (orient:+) max_ev_support = 1 scaffold_4 + retained_exons 7151690-7151793 asmbl_41468,asmbl_41469 scaffold_4 + intron_skips_exon 7150900-7151964 asmbl_41465,asmbl_41466 // Exon Skipping and Retention # skipped_exon 7151794-7152429 (orient:+) max_ev_support = 1 # retained_exon 7151965-7151997 (orient:+) max_ev_support = 1 scaffold_4 + retained_exons 7151965-7151997 asmbl_41465,asmbl_41466,asmbl_41469 scaffold_4 + intron_skips_exon 7151794-7152429 asmbl_41468 // Retained and Spliced Intron # retained_intron 7267306-7267957 (orient:+) max_ev_support = 3 # spliced_intron 7267306-7267957 (orient:+) max_ev_support = 3 scaffold_4 + intron 7267306-7267957 asmbl_41483,asmbl_41486 scaffold_4 + retained_intron 7267306-7267957 asmbl_41480,asmbl_41485 // Exon Skipping and Retention # skipped_exon 7266733-7267957 (orient:+) max_ev_support = 3 # retained_exon 7267216-7267305 (orient:+) max_ev_support = 3 scaffold_4 + retained_exons 7267216-7267305 asmbl_41483,asmbl_41486 scaffold_4 + intron_skips_exon 7266733-7267957 asmbl_41481 // Retained and Spliced Intron # retained_intron 7389727-7389948 (orient:+) max_ev_support = 2 # spliced_intron 7389727-7389948 (orient:+) max_ev_support = 1 scaffold_4 + intron 7389727-7389948 asmbl_41499 scaffold_4 + retained_intron 7389727-7389948 asmbl_41497 // Retained and Spliced Intron # retained_intron 8746476-8746565 (orient:+) max_ev_support = 2 # spliced_intron 8746476-8746565 (orient:+) max_ev_support = 1 scaffold_4 + intron 8746476-8746565 asmbl_41574,asmbl_41576 scaffold_4 + retained_intron 8746476-8746565 asmbl_41573 // Retained and Spliced Intron # retained_intron 8746094-8746165 (orient:+) max_ev_support = 1 # spliced_intron 8746094-8746165 (orient:+) max_ev_support = 1 scaffold_4 + intron 8746094-8746165 asmbl_41575 scaffold_4 + retained_intron 8746094-8746165 asmbl_41574 // Retained and Spliced Intron # retained_intron 8746286-8746309 (orient:+) max_ev_support = 1 # spliced_intron 8746286-8746309 (orient:+) max_ev_support = 1 scaffold_4 + intron 8746286-8746309 asmbl_41574 scaffold_4 + retained_intron 8746286-8746309 asmbl_41576 // Exon Skipping and Retention # skipped_exon 8771059-8771702 (orient:+) max_ev_support = 3 # retained_exon 8771496-8771567 (orient:+) max_ev_support = 1 scaffold_4 + retained_exons 8771496-8771567 asmbl_41582 scaffold_4 + intron_skips_exon 8771059-8771702 asmbl_41578,asmbl_41579,asmbl_41580,asmbl_41581 // Retained and Spliced Intron # retained_intron 9254304-9254682 (orient:+) max_ev_support = 1 # spliced_intron 9254304-9254682 (orient:+) max_ev_support = 2 scaffold_4 + intron 9254304-9254682 asmbl_41605 scaffold_4 + retained_intron 9254304-9254682 asmbl_41606 // Exon Skipping and Retention # skipped_exon 9728853-9730590 (orient:+) max_ev_support = 1 # retained_exon 9729577-9729732 (orient:+) max_ev_support = 2 scaffold_4 + retained_exons 9729577-9729732 asmbl_41620 scaffold_4 + intron_skips_exon 9728853-9730590 asmbl_41621 // Retained and Spliced Intron # retained_intron 9998114-9998655 (orient:+) max_ev_support = 3 # spliced_intron 9998114-9998655 (orient:+) max_ev_support = 2 scaffold_4 + intron 9998114-9998655 asmbl_41638,asmbl_41640,asmbl_41641 scaffold_4 + retained_intron 9998114-9998655 asmbl_41637,asmbl_41639 // Exon Skipping and Retention # skipped_exon 10471942-10472461 (orient:+) max_ev_support = 1 # retained_exon 10472211-10472318 (orient:+) max_ev_support = 2 scaffold_4 + retained_exons 10472211-10472318 asmbl_41665 scaffold_4 + intron_skips_exon 10471942-10472461 asmbl_41666 // Exon Skipping and Retention # skipped_exon 10855073-10857971 (orient:+) max_ev_support = 1 # retained_exon 10856850-10856930 (orient:+) max_ev_support = 2 scaffold_4 + retained_exons 10856850-10856930 asmbl_41674 scaffold_4 + intron_skips_exon 10855073-10857971 asmbl_41676 // Exon Skipping and Retention # skipped_exon 10949549-10950569 (orient:+) max_ev_support = 2 # retained_exon 10949926-10949958 (orient:+) max_ev_support = 1 scaffold_4 + retained_exons 10949926-10949958 asmbl_41688 scaffold_4 + intron_skips_exon 10949549-10950569 asmbl_41687 // Retained and Spliced Intron # retained_intron 11075139-11075491 (orient:+) max_ev_support = 3 # spliced_intron 11075139-11075491 (orient:+) max_ev_support = 3 scaffold_4 + intron 11075139-11075491 asmbl_41699 scaffold_4 + retained_intron 11075139-11075491 asmbl_41700 // Retained and Spliced Intron # retained_intron 11075139-11075573 (orient:+) max_ev_support = 3 # spliced_intron 11075139-11075573 (orient:+) max_ev_support = 3 scaffold_4 + intron 11075139-11075573 asmbl_41698 scaffold_4 + retained_intron 11075139-11075573 asmbl_41700 // Retained and Spliced Intron # retained_intron 12457553-12457685 (orient:+) max_ev_support = 1 # spliced_intron 12457553-12457685 (orient:+) max_ev_support = 2 scaffold_4 + intron 12457553-12457685 asmbl_41725 scaffold_4 + retained_intron 12457553-12457685 asmbl_41726 // Retained and Spliced Intron # retained_intron 12711355-12711630 (orient:+) max_ev_support = 3 # spliced_intron 12711355-12711630 (orient:+) max_ev_support = 1 scaffold_4 + intron 12711355-12711630 asmbl_41742 scaffold_4 + retained_intron 12711355-12711630 asmbl_41738 // Exon Skipping and Retention # skipped_exon 12710958-12711630 (orient:+) max_ev_support = 2 # retained_exon 12711343-12711354 (orient:+) max_ev_support = 1 scaffold_4 + retained_exons 12711343-12711354 asmbl_41742 scaffold_4 + intron_skips_exon 12710958-12711630 asmbl_41740 // Exon Skipping and Retention # skipped_exon 12727702-12728360 (orient:+) max_ev_support = 2 # retained_exon 12727979-12728062 (orient:+) max_ev_support = 2 scaffold_4 + retained_exons 12727979-12728062 asmbl_41743 scaffold_4 + intron_skips_exon 12727702-12728360 asmbl_41744 // Retained and Spliced Intron # retained_intron 13075747-13075881 (orient:+) max_ev_support = 2 # spliced_intron 13075747-13075881 (orient:+) max_ev_support = 1 scaffold_4 + intron 13075747-13075881 asmbl_41780 scaffold_4 + retained_intron 13075747-13075881 asmbl_41775,asmbl_41776,asmbl_41777,asmbl_41778,asmbl_41779,asmbl_41781 // Exon Skipping and Retention # skipped_exon 13076162-13076428 (orient:+) max_ev_support = 1 # retained_exon 13076259-13076299 (orient:+) max_ev_support = 2 scaffold_4 + retained_exons 13076259-13076299 asmbl_41775 scaffold_4 + intron_skips_exon 13076162-13076428 asmbl_41778,asmbl_41780 // Exon Skipping and Retention # skipped_exon 13076162-13076345 (orient:+) max_ev_support = 1 # retained_exon 13076259-13076299 (orient:+) max_ev_support = 2 scaffold_4 + retained_exons 13076259-13076299 asmbl_41775 scaffold_4 + intron_skips_exon 13076162-13076345 asmbl_41779 // Retained and Spliced Intron # retained_intron 13076283-13076428 (orient:+) max_ev_support = 1 # spliced_intron 13076283-13076428 (orient:+) max_ev_support = 2 scaffold_4 + intron 13076283-13076428 asmbl_41776,asmbl_41781 scaffold_4 + retained_intron 13076283-13076428 asmbl_41777 // Retained and Spliced Intron # retained_intron 13076300-13076428 (orient:+) max_ev_support = 1 # spliced_intron 13076300-13076428 (orient:+) max_ev_support = 2 scaffold_4 + intron 13076300-13076428 asmbl_41775 scaffold_4 + retained_intron 13076300-13076428 asmbl_41777 // Retained and Spliced Intron # retained_intron 13416104-13416213 (orient:+) max_ev_support = 1 # spliced_intron 13416104-13416213 (orient:+) max_ev_support = 2 scaffold_4 + intron 13416104-13416213 asmbl_41788,asmbl_41789,asmbl_41790,asmbl_41791 scaffold_4 + retained_intron 13416104-13416213 asmbl_41792,asmbl_41793 // Exon Skipping and Retention # skipped_exon 13429773-13431110 (orient:+) max_ev_support = 1 # retained_exon 13430086-13430250 (orient:+) max_ev_support = 1 scaffold_4 + retained_exons 13430086-13430250 asmbl_41795,asmbl_41797 scaffold_4 + intron_skips_exon 13429773-13431110 asmbl_41796 // Retained and Spliced Intron # retained_intron 13429478-13429669 (orient:+) max_ev_support = 1 # spliced_intron 13429478-13429669 (orient:+) max_ev_support = 1 scaffold_4 + intron 13429478-13429669 asmbl_41795,asmbl_41796 scaffold_4 + retained_intron 13429478-13429669 asmbl_41797 // Retained and Spliced Intron # retained_intron 13590208-13590355 (orient:+) max_ev_support = 2 # spliced_intron 13590208-13590355 (orient:+) max_ev_support = 2 scaffold_4 + intron 13590208-13590355 asmbl_41803 scaffold_4 + retained_intron 13590208-13590355 asmbl_41804,asmbl_41805 // Retained and Spliced Intron # retained_intron 14086400-14086753 (orient:+) max_ev_support = 3 # spliced_intron 14086400-14086753 (orient:+) max_ev_support = 3 scaffold_4 + intron 14086400-14086753 asmbl_41838 scaffold_4 + retained_intron 14086400-14086753 asmbl_41837,asmbl_41839 // Retained and Spliced Intron # retained_intron 14087005-14087119 (orient:+) max_ev_support = 2 # spliced_intron 14087005-14087119 (orient:+) max_ev_support = 3 scaffold_4 + intron 14087005-14087119 asmbl_41837,asmbl_41838 scaffold_4 + retained_intron 14087005-14087119 asmbl_41839 // Exon Skipping and Retention # skipped_exon 14981928-14982524 (orient:+) max_ev_support = 2 # retained_exon 14982184-14982314 (orient:+) max_ev_support = 2 scaffold_4 + retained_exons 14982184-14982314 asmbl_41916 scaffold_4 + intron_skips_exon 14981928-14982524 asmbl_41915 // Exon Skipping and Retention # skipped_exon 15007037-15008243 (orient:+) max_ev_support = 2 # retained_exon 15007303-15008130 (orient:+) max_ev_support = 2 scaffold_4 + retained_exons 15007303-15007405,15007707-15007809,15007908-15007981,15008070-15008130 asmbl_41920 scaffold_4 + intron_skips_exon 15007037-15008243 asmbl_41919 // Retained and Spliced Intron # retained_intron 15296018-15296103 (orient:+) max_ev_support = 3 # spliced_intron 15296018-15296103 (orient:+) max_ev_support = 1 scaffold_4 + intron 15296018-15296103 asmbl_41942 scaffold_4 + retained_intron 15296018-15296103 asmbl_41938 // Exon Skipping and Retention # skipped_exon 15295339-15296103 (orient:+) max_ev_support = 2 # retained_exon 15295934-15296017 (orient:+) max_ev_support = 1 scaffold_4 + retained_exons 15295934-15296017 asmbl_41942 scaffold_4 + intron_skips_exon 15295339-15296103 asmbl_41939,asmbl_41941 // Retained and Spliced Intron # retained_intron 16315868-16316019 (orient:+) max_ev_support = 2 # spliced_intron 16315868-16316019 (orient:+) max_ev_support = 2 scaffold_4 + intron 16315868-16316019 asmbl_41962 scaffold_4 + retained_intron 16315868-16316019 asmbl_41961 // Retained and Spliced Intron # retained_intron 16577833-16578010 (orient:+) max_ev_support = 2 # spliced_intron 16577833-16578010 (orient:+) max_ev_support = 2 scaffold_4 + intron 16577833-16578010 asmbl_41975,asmbl_41977,asmbl_41980 scaffold_4 + retained_intron 16577833-16578010 asmbl_41976,asmbl_41979 // Retained and Spliced Intron # retained_intron 16582373-16582576 (orient:+) max_ev_support = 2 # spliced_intron 16582373-16582576 (orient:+) max_ev_support = 3 scaffold_4 + intron 16582373-16582576 asmbl_41981 scaffold_4 + retained_intron 16582373-16582576 asmbl_41982 // Retained and Spliced Intron # retained_intron 16912206-16912455 (orient:+) max_ev_support = 1 # spliced_intron 16912206-16912455 (orient:+) max_ev_support = 1 scaffold_4 + intron 16912206-16912455 asmbl_42010 scaffold_4 + retained_intron 16912206-16912455 asmbl_42011 // Retained and Spliced Intron # retained_intron 16912206-16912492 (orient:+) max_ev_support = 1 # spliced_intron 16912206-16912492 (orient:+) max_ev_support = 1 scaffold_4 + intron 16912206-16912492 asmbl_42009 scaffold_4 + retained_intron 16912206-16912492 asmbl_42011 // Retained and Spliced Intron # retained_intron 16912391-16912492 (orient:+) max_ev_support = 1 # spliced_intron 16912391-16912492 (orient:+) max_ev_support = 1 scaffold_4 + intron 16912391-16912492 asmbl_42008 scaffold_4 + retained_intron 16912391-16912492 asmbl_42011 // Retained and Spliced Intron # retained_intron 17031495-17031641 (orient:+) max_ev_support = 1 # spliced_intron 17031495-17031641 (orient:+) max_ev_support = 2 scaffold_4 + intron 17031495-17031641 asmbl_42020,asmbl_42021 scaffold_4 + retained_intron 17031495-17031641 asmbl_42025 // Retained and Spliced Intron # retained_intron 17032148-17032361 (orient:+) max_ev_support = 1 # spliced_intron 17032148-17032361 (orient:+) max_ev_support = 2 scaffold_4 + intron 17032148-17032361 asmbl_42020,asmbl_42021 scaffold_4 + retained_intron 17032148-17032361 asmbl_42026 // Retained and Spliced Intron # retained_intron 17115130-17115304 (orient:+) max_ev_support = 1 # spliced_intron 17115130-17115304 (orient:+) max_ev_support = 1 scaffold_4 + intron 17115130-17115304 asmbl_42036 scaffold_4 + retained_intron 17115130-17115304 asmbl_42038 // Retained and Spliced Intron # retained_intron 17537231-17537656 (orient:+) max_ev_support = 1 # spliced_intron 17537231-17537656 (orient:+) max_ev_support = 2 scaffold_4 + intron 17537231-17537656 asmbl_42051 scaffold_4 + retained_intron 17537231-17537656 asmbl_42052 // Retained and Spliced Intron # retained_intron 17580414-17580544 (orient:+) max_ev_support = 1 # spliced_intron 17580414-17580544 (orient:+) max_ev_support = 1 scaffold_4 + intron 17580414-17580544 asmbl_42062 scaffold_4 + retained_intron 17580414-17580544 asmbl_42063 // Retained and Spliced Intron # retained_intron 17580414-17580979 (orient:+) max_ev_support = 1 # spliced_intron 17580414-17580979 (orient:+) max_ev_support = 1 scaffold_4 + intron 17580414-17580979 asmbl_42061,asmbl_42064 scaffold_4 + retained_intron 17580414-17580979 asmbl_42063 // Retained and Spliced Intron # retained_intron 17622846-17622975 (orient:+) max_ev_support = 1 # spliced_intron 17622846-17622975 (orient:+) max_ev_support = 2 scaffold_4 + intron 17622846-17622975 asmbl_42068 scaffold_4 + retained_intron 17622846-17622975 asmbl_42069 // Retained and Spliced Intron # retained_intron 17805603-17805997 (orient:+) max_ev_support = 1 # spliced_intron 17805603-17805997 (orient:+) max_ev_support = 1 scaffold_4 + intron 17805603-17805997 asmbl_42076 scaffold_4 + retained_intron 17805603-17805997 asmbl_42074 // Retained and Spliced Intron # retained_intron 17805603-17806025 (orient:+) max_ev_support = 1 # spliced_intron 17805603-17806025 (orient:+) max_ev_support = 1 scaffold_4 + intron 17805603-17806025 asmbl_42075 scaffold_4 + retained_intron 17805603-17806025 asmbl_42074 // Retained and Spliced Intron # retained_intron 18282392-18282451 (orient:+) max_ev_support = 3 # spliced_intron 18282392-18282451 (orient:+) max_ev_support = 1 scaffold_4 + intron 18282392-18282451 asmbl_42086 scaffold_4 + retained_intron 18282392-18282451 asmbl_42085 // Retained and Spliced Intron # retained_intron 18288544-18288639 (orient:+) max_ev_support = 1 # spliced_intron 18288544-18288639 (orient:+) max_ev_support = 1 scaffold_4 + intron 18288544-18288639 asmbl_42090 scaffold_4 + retained_intron 18288544-18288639 asmbl_42091 // Retained and Spliced Intron # retained_intron 18296287-18296326 (orient:+) max_ev_support = 2 # spliced_intron 18296287-18296326 (orient:+) max_ev_support = 1 scaffold_4 + intron 18296287-18296326 asmbl_42097 scaffold_4 + retained_intron 18296287-18296326 asmbl_42096 // Retained and Spliced Intron # retained_intron 18348146-18348526 (orient:+) max_ev_support = 2 # spliced_intron 18348146-18348526 (orient:+) max_ev_support = 2 scaffold_4 + intron 18348146-18348526 asmbl_42098 scaffold_4 + retained_intron 18348146-18348526 asmbl_42099 // Exon Skipping and Retention # skipped_exon 18793260-18795594 (orient:+) max_ev_support = 1 # retained_exon 18793443-18794717 (orient:+) max_ev_support = 2 scaffold_4 + retained_exons 18793443-18793507,18793603-18794266,18794643-18794717 asmbl_42109 scaffold_4 + intron_skips_exon 18793260-18795594 asmbl_42110 // Retained and Spliced Intron # retained_intron 19128360-19128385 (orient:+) max_ev_support = 1 # spliced_intron 19128360-19128385 (orient:+) max_ev_support = 2 scaffold_4 + intron 19128360-19128385 asmbl_42123 scaffold_4 + retained_intron 19128360-19128385 asmbl_42124 // Retained and Spliced Intron # retained_intron 19141911-19141983 (orient:+) max_ev_support = 1 # spliced_intron 19141911-19141983 (orient:+) max_ev_support = 2 scaffold_4 + intron 19141911-19141983 asmbl_42125 scaffold_4 + retained_intron 19141911-19141983 asmbl_42126 // Exon Skipping and Retention # skipped_exon 19371845-19374246 (orient:+) max_ev_support = 1 # retained_exon 19372029-19372090 (orient:+) max_ev_support = 2 scaffold_4 + retained_exons 19372029-19372090 asmbl_42137 scaffold_4 + intron_skips_exon 19371845-19374246 asmbl_42136 // Retained and Spliced Intron # retained_intron 19379217-19379340 (orient:+) max_ev_support = 2 # spliced_intron 19379217-19379340 (orient:+) max_ev_support = 2 scaffold_4 + intron 19379217-19379340 asmbl_42136 scaffold_4 + retained_intron 19379217-19379340 asmbl_42137 // Exon Skipping and Retention # skipped_exon 19443462-19444949 (orient:+) max_ev_support = 1 # retained_exon 19443661-19444835 (orient:+) max_ev_support = 1 scaffold_4 + retained_exons 19443661-19443913,19444618-19444835 asmbl_42147 scaffold_4 + intron_skips_exon 19443462-19444949 asmbl_42148 // Exon Skipping and Retention # skipped_exon 19679866-19680199 (orient:+) max_ev_support = 3 # retained_exon 19679973-19680110 (orient:+) max_ev_support = 3 scaffold_4 + retained_exons 19679973-19680110 asmbl_42156,asmbl_42157 scaffold_4 + intron_skips_exon 19679866-19680199 asmbl_42155 // Exon Skipping and Retention # skipped_exon 19752549-19753056 (orient:+) max_ev_support = 3 # retained_exon 19752814-19752930 (orient:+) max_ev_support = 3 scaffold_4 + retained_exons 19752814-19752930 asmbl_42160 scaffold_4 + intron_skips_exon 19752549-19753056 asmbl_42161,asmbl_42162 // Retained and Spliced Intron # retained_intron 19753353-19753666 (orient:+) max_ev_support = 3 # spliced_intron 19753353-19753666 (orient:+) max_ev_support = 3 scaffold_4 + intron 19753353-19753666 asmbl_42160,asmbl_42161 scaffold_4 + retained_intron 19753353-19753666 asmbl_42162 // Retained and Spliced Intron # retained_intron 115885-116152 (orient:-) max_ev_support = 3 # spliced_intron 115885-116152 (orient:-) max_ev_support = 2 scaffold_4 - intron 115885-116152 asmbl_42306 scaffold_4 - retained_intron 115885-116152 asmbl_42305 // Retained and Spliced Intron # retained_intron 232495-232641 (orient:-) max_ev_support = 3 # spliced_intron 232495-232641 (orient:-) max_ev_support = 1 scaffold_4 - intron 232495-232641 asmbl_42316 scaffold_4 - retained_intron 232495-232641 asmbl_42315 // Retained and Spliced Intron # retained_intron 306262-306547 (orient:-) max_ev_support = 3 # spliced_intron 306262-306547 (orient:-) max_ev_support = 3 scaffold_4 - intron 306262-306547 asmbl_42325 scaffold_4 - retained_intron 306262-306547 asmbl_42324 // Exon Skipping and Retention # skipped_exon 306262-307220 (orient:-) max_ev_support = 3 # retained_exon 306548-306715 (orient:-) max_ev_support = 3 scaffold_4 - retained_exons 306548-306715 asmbl_42325 scaffold_4 - intron_skips_exon 306262-307220 asmbl_42326 // Retained and Spliced Intron # retained_intron 753564-753737 (orient:-) max_ev_support = 3 # spliced_intron 753564-753737 (orient:-) max_ev_support = 1 scaffold_4 - intron 753564-753737 asmbl_42347 scaffold_4 - retained_intron 753564-753737 asmbl_42346 // Retained and Spliced Intron # retained_intron 1441879-1442446 (orient:-) max_ev_support = 3 # spliced_intron 1441879-1442446 (orient:-) max_ev_support = 1 scaffold_4 - intron 1441879-1442446 asmbl_42377 scaffold_4 - retained_intron 1441879-1442446 asmbl_42376 // Retained and Spliced Intron # retained_intron 2611815-2611924 (orient:-) max_ev_support = 2 # spliced_intron 2611815-2611924 (orient:-) max_ev_support = 2 scaffold_4 - intron 2611815-2611924 asmbl_42396 scaffold_4 - retained_intron 2611815-2611924 asmbl_42395 // Retained and Spliced Intron # retained_intron 3211226-3211758 (orient:-) max_ev_support = 5 # spliced_intron 3211226-3211758 (orient:-) max_ev_support = 1 scaffold_4 - intron 3211226-3211758 asmbl_42410 scaffold_4 - retained_intron 3211226-3211758 asmbl_42409 // Exon Skipping and Retention # skipped_exon 3229649-3230889 (orient:-) max_ev_support = 1 # retained_exon 3230322-3230370 (orient:-) max_ev_support = 1 scaffold_4 - retained_exons 3230322-3230370 asmbl_42417 scaffold_4 - intron_skips_exon 3229649-3230889 asmbl_42416,asmbl_42419 // Retained and Spliced Intron # retained_intron 3237101-3237225 (orient:-) max_ev_support = 4 # spliced_intron 3237101-3237225 (orient:-) max_ev_support = 2 scaffold_4 - intron 3237101-3237225 asmbl_42423,asmbl_42424,asmbl_42425,asmbl_42426 scaffold_4 - retained_intron 3237101-3237225 asmbl_42422 // Retained and Spliced Intron # retained_intron 3237335-3237419 (orient:-) max_ev_support = 4 # spliced_intron 3237335-3237419 (orient:-) max_ev_support = 2 scaffold_4 - intron 3237335-3237419 asmbl_42423,asmbl_42426 scaffold_4 - retained_intron 3237335-3237419 asmbl_42422 // Retained and Spliced Intron # retained_intron 3237335-3237423 (orient:-) max_ev_support = 4 # spliced_intron 3237335-3237423 (orient:-) max_ev_support = 1 scaffold_4 - intron 3237335-3237423 asmbl_42425 scaffold_4 - retained_intron 3237335-3237423 asmbl_42422 // Retained and Spliced Intron # retained_intron 3237335-3238369 (orient:-) max_ev_support = 4 # spliced_intron 3237335-3238369 (orient:-) max_ev_support = 1 scaffold_4 - intron 3237335-3238369 asmbl_42424 scaffold_4 - retained_intron 3237335-3238369 asmbl_42422 // Retained and Spliced Intron # retained_intron 3237961-3238369 (orient:-) max_ev_support = 2 # spliced_intron 3237961-3238369 (orient:-) max_ev_support = 2 scaffold_4 - intron 3237961-3238369 asmbl_42423 scaffold_4 - retained_intron 3237961-3238369 asmbl_42422,asmbl_42425,asmbl_42426 // Exon Skipping and Retention # skipped_exon 3237335-3238369 (orient:-) max_ev_support = 1 # retained_exon 3237420-3237960 (orient:-) max_ev_support = 2 scaffold_4 - retained_exons 3237420-3237960 asmbl_42423 scaffold_4 - intron_skips_exon 3237335-3238369 asmbl_42424 // Retained and Spliced Intron # retained_intron 3243470-3243537 (orient:-) max_ev_support = 1 # spliced_intron 3243470-3243537 (orient:-) max_ev_support = 1 scaffold_4 - intron 3243470-3243537 asmbl_42428 scaffold_4 - retained_intron 3243470-3243537 asmbl_42427 // Exon Skipping and Retention # skipped_exon 3251176-3252469 (orient:-) max_ev_support = 1 # retained_exon 3252036-3252365 (orient:-) max_ev_support = 2 scaffold_4 - retained_exons 3252036-3252088,3252266-3252365 asmbl_42429 scaffold_4 - intron_skips_exon 3251176-3252469 asmbl_42430 // Exon Skipping and Retention # skipped_exon 3440312-3442264 (orient:-) max_ev_support = 2 # retained_exon 3441462-3441542 (orient:-) max_ev_support = 2 scaffold_4 - retained_exons 3441462-3441542 asmbl_42444 scaffold_4 - intron_skips_exon 3440312-3442264 asmbl_42443 // Retained and Spliced Intron # retained_intron 3528251-3528359 (orient:-) max_ev_support = 1 # spliced_intron 3528251-3528359 (orient:-) max_ev_support = 1 scaffold_4 - intron 3528251-3528359 asmbl_42449 scaffold_4 - retained_intron 3528251-3528359 asmbl_42448 // Retained and Spliced Intron # retained_intron 3528251-3528471 (orient:-) max_ev_support = 1 # spliced_intron 3528251-3528471 (orient:-) max_ev_support = 1 scaffold_4 - intron 3528251-3528471 asmbl_42450 scaffold_4 - retained_intron 3528251-3528471 asmbl_42448 // Retained and Spliced Intron # retained_intron 3884999-3885621 (orient:-) max_ev_support = 4 # spliced_intron 3884999-3885621 (orient:-) max_ev_support = 1 scaffold_4 - intron 3884999-3885621 asmbl_42462 scaffold_4 - retained_intron 3884999-3885621 asmbl_42459,asmbl_42460,asmbl_42461 // Retained and Spliced Intron # retained_intron 4112610-4112829 (orient:-) max_ev_support = 1 # spliced_intron 4112610-4112829 (orient:-) max_ev_support = 2 scaffold_4 - intron 4112610-4112829 asmbl_42481 scaffold_4 - retained_intron 4112610-4112829 asmbl_42483 // Retained and Spliced Intron # retained_intron 4112681-4112829 (orient:-) max_ev_support = 1 # spliced_intron 4112681-4112829 (orient:-) max_ev_support = 2 scaffold_4 - intron 4112681-4112829 asmbl_42480,asmbl_42484,asmbl_42485 scaffold_4 - retained_intron 4112681-4112829 asmbl_42483 // Retained and Spliced Intron # retained_intron 4112991-4113116 (orient:-) max_ev_support = 1 # spliced_intron 4112991-4113116 (orient:-) max_ev_support = 2 scaffold_4 - intron 4112991-4113116 asmbl_42480,asmbl_42481 scaffold_4 - retained_intron 4112991-4113116 asmbl_42484,asmbl_42485 // Retained and Spliced Intron # retained_intron 4113314-4113401 (orient:-) max_ev_support = 1 # spliced_intron 4113314-4113401 (orient:-) max_ev_support = 2 scaffold_4 - intron 4113314-4113401 asmbl_42480,asmbl_42481,asmbl_42485,asmbl_42486,asmbl_42487,asmbl_42488 scaffold_4 - retained_intron 4113314-4113401 asmbl_42484 // Retained and Spliced Intron # retained_intron 4113203-4113283 (orient:-) max_ev_support = 1 # spliced_intron 4113203-4113283 (orient:-) max_ev_support = 2 scaffold_4 - intron 4113203-4113283 asmbl_42480,asmbl_42481,asmbl_42484,asmbl_42485 scaffold_4 - retained_intron 4113203-4113283 asmbl_42486,asmbl_42487,asmbl_42488 // Retained and Spliced Intron # retained_intron 4113453-4113870 (orient:-) max_ev_support = 1 # spliced_intron 4113453-4113870 (orient:-) max_ev_support = 2 scaffold_4 - intron 4113453-4113870 asmbl_42480,asmbl_42481,asmbl_42485,asmbl_42486 scaffold_4 - retained_intron 4113453-4113870 asmbl_42488 // Retained and Spliced Intron # retained_intron 4113774-4113870 (orient:-) max_ev_support = 1 # spliced_intron 4113774-4113870 (orient:-) max_ev_support = 1 scaffold_4 - intron 4113774-4113870 asmbl_42487 scaffold_4 - retained_intron 4113774-4113870 asmbl_42488 // Retained and Spliced Intron # retained_intron 4117926-4118044 (orient:-) max_ev_support = 2 # spliced_intron 4117926-4118044 (orient:-) max_ev_support = 1 scaffold_4 - intron 4117926-4118044 asmbl_42493 scaffold_4 - retained_intron 4117926-4118044 asmbl_42492 // Retained and Spliced Intron # retained_intron 4120774-4120939 (orient:-) max_ev_support = 2 # spliced_intron 4120774-4120939 (orient:-) max_ev_support = 2 scaffold_4 - intron 4120774-4120939 asmbl_42496,asmbl_42499,asmbl_42500 scaffold_4 - retained_intron 4120774-4120939 asmbl_42497,asmbl_42498 // Retained and Spliced Intron # retained_intron 4121063-4121376 (orient:-) max_ev_support = 2 # spliced_intron 4121063-4121376 (orient:-) max_ev_support = 2 scaffold_4 - intron 4121063-4121376 asmbl_42496,asmbl_42500 scaffold_4 - retained_intron 4121063-4121376 asmbl_42497,asmbl_42498,asmbl_42499 // Retained and Spliced Intron # retained_intron 4121525-4121687 (orient:-) max_ev_support = 2 # spliced_intron 4121525-4121687 (orient:-) max_ev_support = 2 scaffold_4 - intron 4121525-4121687 asmbl_42496 scaffold_4 - retained_intron 4121525-4121687 asmbl_42497,asmbl_42499 // Retained and Spliced Intron # retained_intron 4121588-4121687 (orient:-) max_ev_support = 2 # spliced_intron 4121588-4121687 (orient:-) max_ev_support = 1 scaffold_4 - intron 4121588-4121687 asmbl_42498,asmbl_42500 scaffold_4 - retained_intron 4121588-4121687 asmbl_42497,asmbl_42499 // Retained and Spliced Intron # retained_intron 4423769-4423970 (orient:-) max_ev_support = 1 # spliced_intron 4423769-4423970 (orient:-) max_ev_support = 2 scaffold_4 - intron 4423769-4423970 asmbl_42512,asmbl_42514 scaffold_4 - retained_intron 4423769-4423970 asmbl_42513,asmbl_42515 // Retained and Spliced Intron # retained_intron 4498633-4498751 (orient:-) max_ev_support = 2 # spliced_intron 4498633-4498751 (orient:-) max_ev_support = 3 scaffold_4 - intron 4498633-4498751 asmbl_42519,asmbl_42521 scaffold_4 - retained_intron 4498633-4498751 asmbl_42520 // Retained and Spliced Intron # retained_intron 4890208-4890382 (orient:-) max_ev_support = 2 # spliced_intron 4890208-4890382 (orient:-) max_ev_support = 2 scaffold_4 - intron 4890208-4890382 asmbl_42539 scaffold_4 - retained_intron 4890208-4890382 asmbl_42538 // Exon Skipping and Retention # skipped_exon 4896325-4898259 (orient:-) max_ev_support = 2 # retained_exon 4897738-4897922 (orient:-) max_ev_support = 2 scaffold_4 - retained_exons 4897738-4897922 asmbl_42542 scaffold_4 - intron_skips_exon 4896325-4898259 asmbl_42541 // Exon Skipping and Retention # skipped_exon 5033786-5035431 (orient:-) max_ev_support = 1 # retained_exon 5034529-5034615 (orient:-) max_ev_support = 1 scaffold_4 - retained_exons 5034529-5034615 asmbl_42552,asmbl_42553 scaffold_4 - intron_skips_exon 5033786-5035431 asmbl_42554 // Exon Skipping and Retention # skipped_exon 5034616-5035716 (orient:-) max_ev_support = 1 # retained_exon 5035432-5035557 (orient:-) max_ev_support = 1 scaffold_4 - retained_exons 5035432-5035557 asmbl_42553,asmbl_42554 scaffold_4 - intron_skips_exon 5034616-5035716 asmbl_42552 // Retained and Spliced Intron # retained_intron 5183708-5183825 (orient:-) max_ev_support = 3 # spliced_intron 5183708-5183825 (orient:-) max_ev_support = 2 scaffold_4 - intron 5183708-5183825 asmbl_42562,asmbl_42563,asmbl_42564 scaffold_4 - retained_intron 5183708-5183825 asmbl_42561 // Retained and Spliced Intron # retained_intron 5215330-5215445 (orient:-) max_ev_support = 2 # spliced_intron 5215330-5215445 (orient:-) max_ev_support = 2 scaffold_4 - intron 5215330-5215445 asmbl_42566 scaffold_4 - retained_intron 5215330-5215445 asmbl_42567 // Exon Skipping and Retention # skipped_exon 5221309-5222170 (orient:-) max_ev_support = 3 # retained_exon 5221540-5221661 (orient:-) max_ev_support = 2 scaffold_4 - retained_exons 5221540-5221661 asmbl_42570 scaffold_4 - intron_skips_exon 5221309-5222170 asmbl_42569 // Retained and Spliced Intron # retained_intron 5228399-5228662 (orient:-) max_ev_support = 3 # spliced_intron 5228399-5228662 (orient:-) max_ev_support = 1 scaffold_4 - intron 5228399-5228662 asmbl_42575 scaffold_4 - retained_intron 5228399-5228662 asmbl_42572,asmbl_42576 // Retained and Spliced Intron # retained_intron 5228399-5230621 (orient:-) max_ev_support = 3 # spliced_intron 5228399-5230621 (orient:-) max_ev_support = 2 scaffold_4 - intron 5228399-5230621 asmbl_42573 scaffold_4 - retained_intron 5228399-5230621 asmbl_42572,asmbl_42576 // Retained and Spliced Intron # retained_intron 5228399-5231130 (orient:-) max_ev_support = 3 # spliced_intron 5228399-5231130 (orient:-) max_ev_support = 2 scaffold_4 - intron 5228399-5231130 asmbl_42574,asmbl_42577 scaffold_4 - retained_intron 5228399-5231130 asmbl_42572 // Retained and Spliced Intron # retained_intron 5230743-5231130 (orient:-) max_ev_support = 3 # spliced_intron 5230743-5231130 (orient:-) max_ev_support = 2 scaffold_4 - intron 5230743-5231130 asmbl_42573,asmbl_42576 scaffold_4 - retained_intron 5230743-5231130 asmbl_42572,asmbl_42575 // Retained and Spliced Intron # retained_intron 5231186-5231400 (orient:-) max_ev_support = 2 # spliced_intron 5231186-5231400 (orient:-) max_ev_support = 2 scaffold_4 - intron 5231186-5231400 asmbl_42573,asmbl_42576,asmbl_42577 scaffold_4 - retained_intron 5231186-5231400 asmbl_42572,asmbl_42575 // Exon Skipping and Retention # skipped_exon 5228399-5231130 (orient:-) max_ev_support = 2 # retained_exon 5230622-5230742 (orient:-) max_ev_support = 2 scaffold_4 - retained_exons 5230622-5230742 asmbl_42573 scaffold_4 - intron_skips_exon 5228399-5231130 asmbl_42574,asmbl_42577 // Retained and Spliced Intron # retained_intron 5444968-5445072 (orient:-) max_ev_support = 2 # spliced_intron 5444968-5445072 (orient:-) max_ev_support = 2 scaffold_4 - intron 5444968-5445072 asmbl_42605 scaffold_4 - retained_intron 5444968-5445072 asmbl_42606 // Exon Skipping and Retention # skipped_exon 5651119-5651635 (orient:-) max_ev_support = 2 # retained_exon 5651380-5651422 (orient:-) max_ev_support = 2 scaffold_4 - retained_exons 5651380-5651422 asmbl_42616,asmbl_42619,asmbl_42620,asmbl_42625,asmbl_42627 scaffold_4 - intron_skips_exon 5651119-5651635 asmbl_42621 // Retained and Spliced Intron # retained_intron 5653238-5653334 (orient:-) max_ev_support = 2 # spliced_intron 5653238-5653334 (orient:-) max_ev_support = 2 scaffold_4 - intron 5653238-5653334 asmbl_42618,asmbl_42621 scaffold_4 - retained_intron 5653238-5653334 asmbl_42616,asmbl_42617,asmbl_42619,asmbl_42620,asmbl_42623,asmbl_42624,asmbl_42625 // Retained and Spliced Intron # retained_intron 5653074-5653166 (orient:-) max_ev_support = 1 # spliced_intron 5653074-5653166 (orient:-) max_ev_support = 2 scaffold_4 - intron 5653074-5653166 asmbl_42616,asmbl_42618,asmbl_42619,asmbl_42620,asmbl_42621,asmbl_42623,asmbl_42624,asmbl_42625 scaffold_4 - retained_intron 5653074-5653166 asmbl_42617 // Retained and Spliced Intron # retained_intron 5651119-5651379 (orient:-) max_ev_support = 2 # spliced_intron 5651119-5651379 (orient:-) max_ev_support = 2 scaffold_4 - intron 5651119-5651379 asmbl_42616,asmbl_42619,asmbl_42620,asmbl_42625,asmbl_42627 scaffold_4 - retained_intron 5651119-5651379 asmbl_42618,asmbl_42623,asmbl_42624,asmbl_42628 // Retained and Spliced Intron # retained_intron 5651119-5651635 (orient:-) max_ev_support = 2 # spliced_intron 5651119-5651635 (orient:-) max_ev_support = 2 scaffold_4 - intron 5651119-5651635 asmbl_42621 scaffold_4 - retained_intron 5651119-5651635 asmbl_42618,asmbl_42623 // Retained and Spliced Intron # retained_intron 5651423-5651635 (orient:-) max_ev_support = 2 # spliced_intron 5651423-5651635 (orient:-) max_ev_support = 2 scaffold_4 - intron 5651423-5651635 asmbl_42616,asmbl_42619,asmbl_42620,asmbl_42624,asmbl_42625,asmbl_42627,asmbl_42628 scaffold_4 - retained_intron 5651423-5651635 asmbl_42618,asmbl_42623 // Retained and Spliced Intron # retained_intron 5651885-5652054 (orient:-) max_ev_support = 2 # spliced_intron 5651885-5652054 (orient:-) max_ev_support = 3 scaffold_4 - intron 5651885-5652054 asmbl_42617 scaffold_4 - retained_intron 5651885-5652054 asmbl_42619,asmbl_42623,asmbl_42624,asmbl_42628 // Retained and Spliced Intron # retained_intron 5651946-5652054 (orient:-) max_ev_support = 2 # spliced_intron 5651946-5652054 (orient:-) max_ev_support = 3 scaffold_4 - intron 5651946-5652054 asmbl_42616,asmbl_42618,asmbl_42620,asmbl_42621,asmbl_42625,asmbl_42627 scaffold_4 - retained_intron 5651946-5652054 asmbl_42619,asmbl_42623,asmbl_42624,asmbl_42628 // Retained and Spliced Intron # retained_intron 5650431-5650953 (orient:-) max_ev_support = 2 # spliced_intron 5650431-5650953 (orient:-) max_ev_support = 2 scaffold_4 - intron 5650431-5650953 asmbl_42616,asmbl_42618,asmbl_42619,asmbl_42620,asmbl_42623,asmbl_42624,asmbl_42627,asmbl_42628 scaffold_4 - retained_intron 5650431-5650953 asmbl_42621,asmbl_42625 // Retained and Spliced Intron # retained_intron 5648305-5648753 (orient:-) max_ev_support = 2 # spliced_intron 5648305-5648753 (orient:-) max_ev_support = 2 scaffold_4 - intron 5648305-5648753 asmbl_42616,asmbl_42626,asmbl_42631 scaffold_4 - retained_intron 5648305-5648753 asmbl_42622,asmbl_42629 // Retained and Spliced Intron # retained_intron 5648812-5648953 (orient:-) max_ev_support = 2 # spliced_intron 5648812-5648953 (orient:-) max_ev_support = 1 scaffold_4 - intron 5648812-5648953 asmbl_42626 scaffold_4 - retained_intron 5648812-5648953 asmbl_42622,asmbl_42629,asmbl_42631 // Retained and Spliced Intron # retained_intron 5648812-5649001 (orient:-) max_ev_support = 2 # spliced_intron 5648812-5649001 (orient:-) max_ev_support = 2 scaffold_4 - intron 5648812-5649001 asmbl_42616 scaffold_4 - retained_intron 5648812-5649001 asmbl_42622,asmbl_42629,asmbl_42631 // Retained and Spliced Intron # retained_intron 5651747-5651850 (orient:-) max_ev_support = 1 # spliced_intron 5651747-5651850 (orient:-) max_ev_support = 2 scaffold_4 - intron 5651747-5651850 asmbl_42616,asmbl_42618,asmbl_42619,asmbl_42620,asmbl_42621,asmbl_42624,asmbl_42625,asmbl_42627,asmbl_42628 scaffold_4 - retained_intron 5651747-5651850 asmbl_42623 // Exon Skipping and Retention # skipped_exon 5738957-5739769 (orient:-) max_ev_support = 2 # retained_exon 5739522-5739541 (orient:-) max_ev_support = 1 scaffold_4 - retained_exons 5739522-5739541 asmbl_42637 scaffold_4 - intron_skips_exon 5738957-5739769 asmbl_42635 // Retained and Spliced Intron # retained_intron 5772794-5774235 (orient:-) max_ev_support = 2 # spliced_intron 5772794-5774235 (orient:-) max_ev_support = 3 scaffold_4 - intron 5772794-5774235 asmbl_42638 scaffold_4 - retained_intron 5772794-5774235 asmbl_42639 // Retained and Spliced Intron # retained_intron 6129993-6130181 (orient:-) max_ev_support = 2 # spliced_intron 6129993-6130181 (orient:-) max_ev_support = 1 scaffold_4 - intron 6129993-6130181 asmbl_42653 scaffold_4 - retained_intron 6129993-6130181 asmbl_42652 // Retained and Spliced Intron # retained_intron 6188631-6188800 (orient:-) max_ev_support = 1 # spliced_intron 6188631-6188800 (orient:-) max_ev_support = 3 scaffold_4 - intron 6188631-6188800 asmbl_42660 scaffold_4 - retained_intron 6188631-6188800 asmbl_42663,asmbl_42664 // Exon Skipping and Retention # skipped_exon 6280167-6283128 (orient:-) max_ev_support = 2 # retained_exon 6282538-6282644 (orient:-) max_ev_support = 3 scaffold_4 - retained_exons 6282538-6282644 asmbl_42666,asmbl_42667,asmbl_42670,asmbl_42673,asmbl_42675 scaffold_4 - intron_skips_exon 6280167-6283128 asmbl_42671 // Retained and Spliced Intron # retained_intron 6282645-6283128 (orient:-) max_ev_support = 2 # spliced_intron 6282645-6283128 (orient:-) max_ev_support = 3 scaffold_4 - intron 6282645-6283128 asmbl_42666,asmbl_42667,asmbl_42670,asmbl_42673,asmbl_42675 scaffold_4 - retained_intron 6282645-6283128 asmbl_42669,asmbl_42672 // Retained and Spliced Intron # retained_intron 6286227-6286323 (orient:-) max_ev_support = 2 # spliced_intron 6286227-6286323 (orient:-) max_ev_support = 3 scaffold_4 - intron 6286227-6286323 asmbl_42667,asmbl_42671,asmbl_42672 scaffold_4 - retained_intron 6286227-6286323 asmbl_42670 // Retained and Spliced Intron # retained_intron 6286227-6286678 (orient:-) max_ev_support = 2 # spliced_intron 6286227-6286678 (orient:-) max_ev_support = 3 scaffold_4 - intron 6286227-6286678 asmbl_42666,asmbl_42669,asmbl_42673 scaffold_4 - retained_intron 6286227-6286678 asmbl_42670 // Retained and Spliced Intron # retained_intron 6283224-6283378 (orient:-) max_ev_support = 1 # spliced_intron 6283224-6283378 (orient:-) max_ev_support = 3 scaffold_4 - intron 6283224-6283378 asmbl_42666,asmbl_42667,asmbl_42669,asmbl_42671,asmbl_42672 scaffold_4 - retained_intron 6283224-6283378 asmbl_42675 // Retained and Spliced Intron # retained_intron 6672886-6673441 (orient:-) max_ev_support = 3 # spliced_intron 6672886-6673441 (orient:-) max_ev_support = 2 scaffold_4 - intron 6672886-6673441 asmbl_42694,asmbl_42695 scaffold_4 - retained_intron 6672886-6673441 asmbl_42693 // Retained and Spliced Intron # retained_intron 7198052-7199617 (orient:-) max_ev_support = 4 # spliced_intron 7198052-7199617 (orient:-) max_ev_support = 1 scaffold_4 - intron 7198052-7199617 asmbl_42701 scaffold_4 - retained_intron 7198052-7199617 asmbl_42700 // Retained and Spliced Intron # retained_intron 7346985-7347256 (orient:-) max_ev_support = 2 # spliced_intron 7346985-7347256 (orient:-) max_ev_support = 2 scaffold_4 - intron 7346985-7347256 asmbl_42709 scaffold_4 - retained_intron 7346985-7347256 asmbl_42710 // Retained and Spliced Intron # retained_intron 7380297-7380425 (orient:-) max_ev_support = 2 # spliced_intron 7380297-7380425 (orient:-) max_ev_support = 1 scaffold_4 - intron 7380297-7380425 asmbl_42715 scaffold_4 - retained_intron 7380297-7380425 asmbl_42714 // Retained and Spliced Intron # retained_intron 8097999-8098087 (orient:-) max_ev_support = 1 # spliced_intron 8097999-8098087 (orient:-) max_ev_support = 1 scaffold_4 - intron 8097999-8098087 asmbl_42748 scaffold_4 - retained_intron 8097999-8098087 asmbl_42747 // Retained and Spliced Intron # retained_intron 8426956-8427185 (orient:-) max_ev_support = 2 # spliced_intron 8426956-8427185 (orient:-) max_ev_support = 2 scaffold_4 - intron 8426956-8427185 asmbl_42773 scaffold_4 - retained_intron 8426956-8427185 asmbl_42772 // Retained and Spliced Intron # retained_intron 8427334-8427438 (orient:-) max_ev_support = 2 # spliced_intron 8427334-8427438 (orient:-) max_ev_support = 2 scaffold_4 - intron 8427334-8427438 asmbl_42773 scaffold_4 - retained_intron 8427334-8427438 asmbl_42772,asmbl_42775 // Retained and Spliced Intron # retained_intron 8427515-8427786 (orient:-) max_ev_support = 2 # spliced_intron 8427515-8427786 (orient:-) max_ev_support = 2 scaffold_4 - intron 8427515-8427786 asmbl_42773,asmbl_42775 scaffold_4 - retained_intron 8427515-8427786 asmbl_42772 // Retained and Spliced Intron # retained_intron 8619480-8619572 (orient:-) max_ev_support = 1 # spliced_intron 8619480-8619572 (orient:-) max_ev_support = 3 scaffold_4 - intron 8619480-8619572 asmbl_42780,asmbl_42783 scaffold_4 - retained_intron 8619480-8619572 asmbl_42782 // Retained and Spliced Intron # retained_intron 8822899-8822991 (orient:-) max_ev_support = 2 # spliced_intron 8822899-8822991 (orient:-) max_ev_support = 2 scaffold_4 - intron 8822899-8822991 asmbl_42794 scaffold_4 - retained_intron 8822899-8822991 asmbl_42793 // Retained and Spliced Intron # retained_intron 9353119-9353325 (orient:-) max_ev_support = 3 # spliced_intron 9353119-9353325 (orient:-) max_ev_support = 1 scaffold_4 - intron 9353119-9353325 asmbl_42810 scaffold_4 - retained_intron 9353119-9353325 asmbl_42807,asmbl_42808 // Retained and Spliced Intron # retained_intron 9344094-9344316 (orient:-) max_ev_support = 1 # spliced_intron 9344094-9344316 (orient:-) max_ev_support = 2 scaffold_4 - intron 9344094-9344316 asmbl_42807,asmbl_42810 scaffold_4 - retained_intron 9344094-9344316 asmbl_42808 // Retained and Spliced Intron # retained_intron 9343784-9343976 (orient:-) max_ev_support = 2 # spliced_intron 9343784-9343976 (orient:-) max_ev_support = 2 scaffold_4 - intron 9343784-9343976 asmbl_42807,asmbl_42808,asmbl_42810 scaffold_4 - retained_intron 9343784-9343976 asmbl_42809 // Retained and Spliced Intron # retained_intron 9965598-9965735 (orient:-) max_ev_support = 2 # spliced_intron 9965598-9965735 (orient:-) max_ev_support = 1 scaffold_4 - intron 9965598-9965735 asmbl_42832 scaffold_4 - retained_intron 9965598-9965735 asmbl_42830 // Exon Skipping and Retention # skipped_exon 10451857-10452576 (orient:-) max_ev_support = 1 # retained_exon 10452291-10452441 (orient:-) max_ev_support = 2 scaffold_4 - retained_exons 10452291-10452441 asmbl_42848,asmbl_42849,asmbl_42854 scaffold_4 - intron_skips_exon 10451857-10452576 asmbl_42850 // Retained and Spliced Intron # retained_intron 10447539-10447632 (orient:-) max_ev_support = 1 # spliced_intron 10447539-10447632 (orient:-) max_ev_support = 2 scaffold_4 - intron 10447539-10447632 asmbl_42848,asmbl_42849,asmbl_42850,asmbl_42851,asmbl_42852,asmbl_42854 scaffold_4 - retained_intron 10447539-10447632 asmbl_42853 // Retained and Spliced Intron # retained_intron 10588124-10588890 (orient:-) max_ev_support = 2 # spliced_intron 10588124-10588890 (orient:-) max_ev_support = 3 scaffold_4 - intron 10588124-10588890 asmbl_42856 scaffold_4 - retained_intron 10588124-10588890 asmbl_42857 // Retained and Spliced Intron # retained_intron 10872473-10872693 (orient:-) max_ev_support = 1 # spliced_intron 10872473-10872693 (orient:-) max_ev_support = 2 scaffold_4 - intron 10872473-10872693 asmbl_42861,asmbl_42863 scaffold_4 - retained_intron 10872473-10872693 asmbl_42862,asmbl_42864 // Retained and Spliced Intron # retained_intron 10872269-10872362 (orient:-) max_ev_support = 1 # spliced_intron 10872269-10872362 (orient:-) max_ev_support = 2 scaffold_4 - intron 10872269-10872362 asmbl_42861,asmbl_42862,asmbl_42863 scaffold_4 - retained_intron 10872269-10872362 asmbl_42864 // Exon Skipping and Retention # skipped_exon 10909209-10910700 (orient:-) max_ev_support = 1 # retained_exon 10909340-10909425 (orient:-) max_ev_support = 2 scaffold_4 - retained_exons 10909340-10909425 asmbl_42866,asmbl_42867 scaffold_4 - intron_skips_exon 10909209-10910700 asmbl_42868 // Retained and Spliced Intron # retained_intron 10924315-10924565 (orient:-) max_ev_support = 2 # spliced_intron 10924315-10924565 (orient:-) max_ev_support = 2 scaffold_4 - intron 10924315-10924565 asmbl_42871 scaffold_4 - retained_intron 10924315-10924565 asmbl_42872 // Retained and Spliced Intron # retained_intron 11986664-11986803 (orient:-) max_ev_support = 3 # spliced_intron 11986664-11986803 (orient:-) max_ev_support = 2 scaffold_4 - intron 11986664-11986803 asmbl_42888 scaffold_4 - retained_intron 11986664-11986803 asmbl_42887 // Retained and Spliced Intron # retained_intron 12374031-12374180 (orient:-) max_ev_support = 1 # spliced_intron 12374031-12374180 (orient:-) max_ev_support = 2 scaffold_4 - intron 12374031-12374180 asmbl_42906 scaffold_4 - retained_intron 12374031-12374180 asmbl_42907 // Retained and Spliced Intron # retained_intron 12380946-12380988 (orient:-) max_ev_support = 2 # spliced_intron 12380946-12380988 (orient:-) max_ev_support = 1 scaffold_4 - intron 12380946-12380988 asmbl_42911 scaffold_4 - retained_intron 12380946-12380988 asmbl_42909,asmbl_42910 // Exon Skipping and Retention # skipped_exon 12571017-12571399 (orient:-) max_ev_support = 2 # retained_exon 12571256-12571368 (orient:-) max_ev_support = 2 scaffold_4 - retained_exons 12571256-12571368 asmbl_42930 scaffold_4 - intron_skips_exon 12571017-12571399 asmbl_42931 // Retained and Spliced Intron # retained_intron 12571017-12571255 (orient:-) max_ev_support = 1 # spliced_intron 12571017-12571255 (orient:-) max_ev_support = 2 scaffold_4 - intron 12571017-12571255 asmbl_42930 scaffold_4 - retained_intron 12571017-12571255 asmbl_42932 // Retained and Spliced Intron # retained_intron 12571017-12571399 (orient:-) max_ev_support = 1 # spliced_intron 12571017-12571399 (orient:-) max_ev_support = 2 scaffold_4 - intron 12571017-12571399 asmbl_42931 scaffold_4 - retained_intron 12571017-12571399 asmbl_42932 // Retained and Spliced Intron # retained_intron 12571369-12571452 (orient:-) max_ev_support = 1 # spliced_intron 12571369-12571452 (orient:-) max_ev_support = 2 scaffold_4 - intron 12571369-12571452 asmbl_42930 scaffold_4 - retained_intron 12571369-12571452 asmbl_42932 // Exon Skipping and Retention # skipped_exon 12628852-12629485 (orient:-) max_ev_support = 1 # retained_exon 12629160-12629249 (orient:-) max_ev_support = 2 scaffold_4 - retained_exons 12629160-12629249 asmbl_42937,asmbl_42938 scaffold_4 - intron_skips_exon 12628852-12629485 asmbl_42940 // Retained and Spliced Intron # retained_intron 12628852-12629159 (orient:-) max_ev_support = 1 # spliced_intron 12628852-12629159 (orient:-) max_ev_support = 2 scaffold_4 - intron 12628852-12629159 asmbl_42937,asmbl_42938 scaffold_4 - retained_intron 12628852-12629159 asmbl_42939 // Exon Skipping and Retention # skipped_exon 12641070-12642425 (orient:-) max_ev_support = 3 # retained_exon 12641759-12641861 (orient:-) max_ev_support = 3 scaffold_4 - retained_exons 12641759-12641861 asmbl_42943 scaffold_4 - intron_skips_exon 12641070-12642425 asmbl_42942 // Retained and Spliced Intron # retained_intron 12689403-12689673 (orient:-) max_ev_support = 2 # spliced_intron 12689403-12689673 (orient:-) max_ev_support = 2 scaffold_4 - intron 12689403-12689673 asmbl_42949,asmbl_42951 scaffold_4 - retained_intron 12689403-12689673 asmbl_42950 // Retained and Spliced Intron # retained_intron 12690853-12690998 (orient:-) max_ev_support = 2 # spliced_intron 12690853-12690998 (orient:-) max_ev_support = 2 scaffold_4 - intron 12690853-12690998 asmbl_42951,asmbl_42952 scaffold_4 - retained_intron 12690853-12690998 asmbl_42953 // Retained and Spliced Intron # retained_intron 12691056-12691283 (orient:-) max_ev_support = 2 # spliced_intron 12691056-12691283 (orient:-) max_ev_support = 2 scaffold_4 - intron 12691056-12691283 asmbl_42951,asmbl_42952 scaffold_4 - retained_intron 12691056-12691283 asmbl_42953 // Retained and Spliced Intron # retained_intron 12691444-12691546 (orient:-) max_ev_support = 2 # spliced_intron 12691444-12691546 (orient:-) max_ev_support = 2 scaffold_4 - intron 12691444-12691546 asmbl_42951,asmbl_42952 scaffold_4 - retained_intron 12691444-12691546 asmbl_42953 // Retained and Spliced Intron # retained_intron 13072234-13072389 (orient:-) max_ev_support = 1 # spliced_intron 13072234-13072389 (orient:-) max_ev_support = 2 scaffold_4 - intron 13072234-13072389 asmbl_42965 scaffold_4 - retained_intron 13072234-13072389 asmbl_42966 // Exon Skipping and Retention # skipped_exon 13114475-13115627 (orient:-) max_ev_support = 2 # retained_exon 13114623-13114670 (orient:-) max_ev_support = 2 scaffold_4 - retained_exons 13114623-13114670 asmbl_42971,asmbl_42974 scaffold_4 - intron_skips_exon 13114475-13115627 asmbl_42972,asmbl_42973 // Retained and Spliced Intron # retained_intron 13183547-13184043 (orient:-) max_ev_support = 1 # spliced_intron 13183547-13184043 (orient:-) max_ev_support = 2 scaffold_4 - intron 13183547-13184043 asmbl_42979,asmbl_42980,asmbl_42981 scaffold_4 - retained_intron 13183547-13184043 asmbl_42982 // Retained and Spliced Intron # retained_intron 13365831-13366046 (orient:-) max_ev_support = 3 # spliced_intron 13365831-13366046 (orient:-) max_ev_support = 2 scaffold_4 - intron 13365831-13366046 asmbl_42991 scaffold_4 - retained_intron 13365831-13366046 asmbl_42990 // Retained and Spliced Intron # retained_intron 13434608-13434816 (orient:-) max_ev_support = 1 # spliced_intron 13434608-13434816 (orient:-) max_ev_support = 2 scaffold_4 - intron 13434608-13434816 asmbl_42997 scaffold_4 - retained_intron 13434608-13434816 asmbl_42998 // Retained and Spliced Intron # retained_intron 13723093-13723242 (orient:-) max_ev_support = 2 # spliced_intron 13723093-13723242 (orient:-) max_ev_support = 1 scaffold_4 - intron 13723093-13723242 asmbl_43002 scaffold_4 - retained_intron 13723093-13723242 asmbl_43000 // Exon Skipping and Retention # skipped_exon 13762275-13763732 (orient:-) max_ev_support = 1 # retained_exon 13762796-13762984 (orient:-) max_ev_support = 2 scaffold_4 - retained_exons 13762796-13762984 asmbl_43003 scaffold_4 - intron_skips_exon 13762275-13763732 asmbl_43007 // Retained and Spliced Intron # retained_intron 13762015-13762163 (orient:-) max_ev_support = 1 # spliced_intron 13762015-13762163 (orient:-) max_ev_support = 2 scaffold_4 - intron 13762015-13762163 asmbl_43003,asmbl_43004,asmbl_43005,asmbl_43007 scaffold_4 - retained_intron 13762015-13762163 asmbl_43006 // Retained and Spliced Intron # retained_intron 13762275-13762795 (orient:-) max_ev_support = 1 # spliced_intron 13762275-13762795 (orient:-) max_ev_support = 2 scaffold_4 - intron 13762275-13762795 asmbl_43003,asmbl_43004,asmbl_43005 scaffold_4 - retained_intron 13762275-13762795 asmbl_43006 // Exon Skipping and Retention # skipped_exon 13875672-13876976 (orient:-) max_ev_support = 2 # retained_exon 13876609-13876629 (orient:-) max_ev_support = 1 scaffold_4 - retained_exons 13876609-13876629 asmbl_43019 scaffold_4 - intron_skips_exon 13875672-13876976 asmbl_43018 // Retained and Spliced Intron # retained_intron 14115549-14115636 (orient:-) max_ev_support = 1 # spliced_intron 14115549-14115636 (orient:-) max_ev_support = 2 scaffold_4 - intron 14115549-14115636 asmbl_43031 scaffold_4 - retained_intron 14115549-14115636 asmbl_43033 // Exon Skipping and Retention # skipped_exon 14318583-14318899 (orient:-) max_ev_support = 2 # retained_exon 14318666-14318790 (orient:-) max_ev_support = 2 scaffold_4 - retained_exons 14318666-14318790 asmbl_43043 scaffold_4 - intron_skips_exon 14318583-14318899 asmbl_43044 // Exon Skipping and Retention # skipped_exon 14318583-14319063 (orient:-) max_ev_support = 2 # retained_exon 14318666-14318970 (orient:-) max_ev_support = 2 scaffold_4 - retained_exons 14318666-14318790,14318900-14318970 asmbl_43043 scaffold_4 - intron_skips_exon 14318583-14319063 asmbl_43045 // Retained and Spliced Intron # retained_intron 14647836-14648056 (orient:-) max_ev_support = 3 # spliced_intron 14647836-14648056 (orient:-) max_ev_support = 2 scaffold_4 - intron 14647836-14648056 asmbl_43063,asmbl_43066 scaffold_4 - retained_intron 14647836-14648056 asmbl_43061,asmbl_43062 // Retained and Spliced Intron # retained_intron 14648132-14648297 (orient:-) max_ev_support = 3 # spliced_intron 14648132-14648297 (orient:-) max_ev_support = 2 scaffold_4 - intron 14648132-14648297 asmbl_43062,asmbl_43063,asmbl_43066 scaffold_4 - retained_intron 14648132-14648297 asmbl_43061 // Retained and Spliced Intron # retained_intron 14648429-14648648 (orient:-) max_ev_support = 1 # spliced_intron 14648429-14648648 (orient:-) max_ev_support = 2 scaffold_4 - intron 14648429-14648648 asmbl_43062,asmbl_43063 scaffold_4 - retained_intron 14648429-14648648 asmbl_43061,asmbl_43066 // Retained and Spliced Intron # retained_intron 14648742-14648884 (orient:-) max_ev_support = 1 # spliced_intron 14648742-14648884 (orient:-) max_ev_support = 2 scaffold_4 - intron 14648742-14648884 asmbl_43061,asmbl_43062,asmbl_43063 scaffold_4 - retained_intron 14648742-14648884 asmbl_43066 // Retained and Spliced Intron # retained_intron 14679949-14680368 (orient:-) max_ev_support = 2 # spliced_intron 14679949-14680368 (orient:-) max_ev_support = 1 scaffold_4 - intron 14679949-14680368 asmbl_43077 scaffold_4 - retained_intron 14679949-14680368 asmbl_43076 // Retained and Spliced Intron # retained_intron 14679968-14680368 (orient:-) max_ev_support = 2 # spliced_intron 14679968-14680368 (orient:-) max_ev_support = 2 scaffold_4 - intron 14679968-14680368 asmbl_43075 scaffold_4 - retained_intron 14679968-14680368 asmbl_43076 // Retained and Spliced Intron # retained_intron 14680896-14681020 (orient:-) max_ev_support = 1 # spliced_intron 14680896-14681020 (orient:-) max_ev_support = 2 scaffold_4 - intron 14680896-14681020 asmbl_43075,asmbl_43077 scaffold_4 - retained_intron 14680896-14681020 asmbl_43076 // Retained and Spliced Intron # retained_intron 15679041-15679145 (orient:-) max_ev_support = 2 # spliced_intron 15679041-15679145 (orient:-) max_ev_support = 2 scaffold_4 - intron 15679041-15679145 asmbl_43111,asmbl_43113,asmbl_43114 scaffold_4 - retained_intron 15679041-15679145 asmbl_43112 // Retained and Spliced Intron # retained_intron 15678206-15678313 (orient:-) max_ev_support = 1 # spliced_intron 15678206-15678313 (orient:-) max_ev_support = 2 scaffold_4 - intron 15678206-15678313 asmbl_43111,asmbl_43112,asmbl_43114 scaffold_4 - retained_intron 15678206-15678313 asmbl_43113 // Exon Skipping and Retention # skipped_exon 15677652-15677958 (orient:-) max_ev_support = 2 # retained_exon 15677765-15677879 (orient:-) max_ev_support = 1 scaffold_4 - retained_exons 15677765-15677879 asmbl_43114 scaffold_4 - intron_skips_exon 15677652-15677958 asmbl_43111,asmbl_43112,asmbl_43113 // Retained and Spliced Intron # retained_intron 15689788-15689823 (orient:-) max_ev_support = 1 # spliced_intron 15689788-15689823 (orient:-) max_ev_support = 1 scaffold_4 - intron 15689788-15689823 asmbl_43117 scaffold_4 - retained_intron 15689788-15689823 asmbl_43116 // Retained and Spliced Intron # retained_intron 15728040-15728147 (orient:-) max_ev_support = 1 # spliced_intron 15728040-15728147 (orient:-) max_ev_support = 2 scaffold_4 - intron 15728040-15728147 asmbl_43120,asmbl_43122 scaffold_4 - retained_intron 15728040-15728147 asmbl_43121 // Retained and Spliced Intron # retained_intron 15907621-15907662 (orient:-) max_ev_support = 3 # spliced_intron 15907621-15907662 (orient:-) max_ev_support = 1 scaffold_4 - intron 15907621-15907662 asmbl_43127 scaffold_4 - retained_intron 15907621-15907662 asmbl_43126 // Retained and Spliced Intron # retained_intron 16131996-16133361 (orient:-) max_ev_support = 6 # spliced_intron 16131996-16133361 (orient:-) max_ev_support = 1 scaffold_4 - intron 16131996-16133361 asmbl_43140,asmbl_43143 scaffold_4 - retained_intron 16131996-16133361 asmbl_43139 // Retained and Spliced Intron # retained_intron 16137284-16137576 (orient:-) max_ev_support = 2 # spliced_intron 16137284-16137576 (orient:-) max_ev_support = 2 scaffold_4 - intron 16137284-16137576 asmbl_43142 scaffold_4 - retained_intron 16137284-16137576 asmbl_43140,asmbl_43143 // Retained and Spliced Intron # retained_intron 16311395-16311679 (orient:-) max_ev_support = 1 # spliced_intron 16311395-16311679 (orient:-) max_ev_support = 2 scaffold_4 - intron 16311395-16311679 asmbl_43150,asmbl_43151 scaffold_4 - retained_intron 16311395-16311679 asmbl_43152 // Exon Skipping and Retention # skipped_exon 16340830-16341198 (orient:-) max_ev_support = 1 # retained_exon 16340870-16340994 (orient:-) max_ev_support = 1 scaffold_4 - retained_exons 16340870-16340994 asmbl_43158 scaffold_4 - intron_skips_exon 16340830-16341198 asmbl_43159 // Exon Skipping and Retention # skipped_exon 16370271-16372613 (orient:-) max_ev_support = 1 # retained_exon 16371629-16371682 (orient:-) max_ev_support = 2 scaffold_4 - retained_exons 16371629-16371682 asmbl_43162 scaffold_4 - intron_skips_exon 16370271-16372613 asmbl_43163 // Exon Skipping and Retention # skipped_exon 16434070-16435033 (orient:-) max_ev_support = 1 # retained_exon 16434731-16434894 (orient:-) max_ev_support = 1 scaffold_4 - retained_exons 16434731-16434894 asmbl_43170 scaffold_4 - intron_skips_exon 16434070-16435033 asmbl_43171,asmbl_43172 // Exon Skipping and Retention # skipped_exon 16433810-16434730 (orient:-) max_ev_support = 1 # retained_exon 16433906-16434069 (orient:-) max_ev_support = 1 scaffold_4 - retained_exons 16433906-16434069 asmbl_43171,asmbl_43172 scaffold_4 - intron_skips_exon 16433810-16434730 asmbl_43170 // Retained and Spliced Intron # retained_intron 16480998-16481101 (orient:-) max_ev_support = 2 # spliced_intron 16480998-16481101 (orient:-) max_ev_support = 1 scaffold_4 - intron 16480998-16481101 asmbl_43180 scaffold_4 - retained_intron 16480998-16481101 asmbl_43178 // Retained and Spliced Intron # retained_intron 16480998-16481263 (orient:-) max_ev_support = 2 # spliced_intron 16480998-16481263 (orient:-) max_ev_support = 2 scaffold_4 - intron 16480998-16481263 asmbl_43177 scaffold_4 - retained_intron 16480998-16481263 asmbl_43178 // Retained and Spliced Intron # retained_intron 16480998-16481293 (orient:-) max_ev_support = 2 # spliced_intron 16480998-16481293 (orient:-) max_ev_support = 2 scaffold_4 - intron 16480998-16481293 asmbl_43176 scaffold_4 - retained_intron 16480998-16481293 asmbl_43178 // Retained and Spliced Intron # retained_intron 16481131-16481263 (orient:-) max_ev_support = 2 # spliced_intron 16481131-16481263 (orient:-) max_ev_support = 1 scaffold_4 - intron 16481131-16481263 asmbl_43180 scaffold_4 - retained_intron 16481131-16481263 asmbl_43178 // Retained and Spliced Intron # retained_intron 16479929-16480208 (orient:-) max_ev_support = 2 # spliced_intron 16479929-16480208 (orient:-) max_ev_support = 2 scaffold_4 - intron 16479929-16480208 asmbl_43176,asmbl_43177,asmbl_43178,asmbl_43180 scaffold_4 - retained_intron 16479929-16480208 asmbl_43179 // Exon Skipping and Retention # skipped_exon 16480998-16481293 (orient:-) max_ev_support = 2 # retained_exon 16481102-16481130 (orient:-) max_ev_support = 1 scaffold_4 - retained_exons 16481102-16481130 asmbl_43180 scaffold_4 - intron_skips_exon 16480998-16481293 asmbl_43176 // Exon Skipping and Retention # skipped_exon 16480998-16481263 (orient:-) max_ev_support = 2 # retained_exon 16481102-16481130 (orient:-) max_ev_support = 1 scaffold_4 - retained_exons 16481102-16481130 asmbl_43180 scaffold_4 - intron_skips_exon 16480998-16481263 asmbl_43177 // Exon Skipping and Retention # skipped_exon 16538973-16540857 (orient:-) max_ev_support = 1 # retained_exon 16540328-16540450 (orient:-) max_ev_support = 2 scaffold_4 - retained_exons 16540328-16540450 asmbl_43189 scaffold_4 - intron_skips_exon 16538973-16540857 asmbl_43192,asmbl_43193 // Exon Skipping and Retention # skipped_exon 16802675-16804433 (orient:-) max_ev_support = 2 # retained_exon 16802877-16804247 (orient:-) max_ev_support = 2 scaffold_4 - retained_exons 16802877-16802938,16803054-16803198,16803325-16803439,16803530-16803644,16804081-16804247 asmbl_43214,asmbl_43215 scaffold_4 - intron_skips_exon 16802675-16804433 asmbl_43216 // Exon Skipping and Retention # skipped_exon 16872570-16873884 (orient:-) max_ev_support = 1 # retained_exon 16873536-16873637 (orient:-) max_ev_support = 2 scaffold_4 - retained_exons 16873536-16873637 asmbl_43225,asmbl_43227 scaffold_4 - intron_skips_exon 16872570-16873884 asmbl_43228 // Retained and Spliced Intron # retained_intron 16869332-16869415 (orient:-) max_ev_support = 1 # spliced_intron 16869332-16869415 (orient:-) max_ev_support = 2 scaffold_4 - intron 16869332-16869415 asmbl_43225,asmbl_43228,asmbl_43229,asmbl_43230 scaffold_4 - retained_intron 16869332-16869415 asmbl_43227 // Exon Skipping and Retention # skipped_exon 16871896-16873535 (orient:-) max_ev_support = 2 # retained_exon 16872468-16872569 (orient:-) max_ev_support = 1 scaffold_4 - retained_exons 16872468-16872569 asmbl_43228 scaffold_4 - intron_skips_exon 16871896-16873535 asmbl_43225,asmbl_43227 // Exon Skipping and Retention # skipped_exon 16882986-16884087 (orient:-) max_ev_support = 1 # retained_exon 16883546-16883674 (orient:-) max_ev_support = 3 scaffold_4 - retained_exons 16883546-16883674 asmbl_43232 scaffold_4 - intron_skips_exon 16882986-16884087 asmbl_43233 // Exon Skipping and Retention # skipped_exon 16881837-16883545 (orient:-) max_ev_support = 3 # retained_exon 16882857-16882985 (orient:-) max_ev_support = 1 scaffold_4 - retained_exons 16882857-16882985 asmbl_43233 scaffold_4 - intron_skips_exon 16881837-16883545 asmbl_43232 // Retained and Spliced Intron # retained_intron 16932301-16932423 (orient:-) max_ev_support = 1 # spliced_intron 16932301-16932423 (orient:-) max_ev_support = 1 scaffold_4 - intron 16932301-16932423 asmbl_43238 scaffold_4 - retained_intron 16932301-16932423 asmbl_43237 // Exon Skipping and Retention # skipped_exon 17128737-17129758 (orient:-) max_ev_support = 2 # retained_exon 17129029-17129156 (orient:-) max_ev_support = 2 scaffold_4 - retained_exons 17129029-17129156 asmbl_43258 scaffold_4 - intron_skips_exon 17128737-17129758 asmbl_43260 // Exon Skipping and Retention # skipped_exon 17129157-17130325 (orient:-) max_ev_support = 2 # retained_exon 17129759-17129886 (orient:-) max_ev_support = 2 scaffold_4 - retained_exons 17129759-17129886 asmbl_43260 scaffold_4 - intron_skips_exon 17129157-17130325 asmbl_43258 // Retained and Spliced Intron # retained_intron 17471150-17471253 (orient:-) max_ev_support = 3 # spliced_intron 17471150-17471253 (orient:-) max_ev_support = 3 scaffold_4 - intron 17471150-17471253 asmbl_43269 scaffold_4 - retained_intron 17471150-17471253 asmbl_43268 // Retained and Spliced Intron # retained_intron 17472694-17472804 (orient:-) max_ev_support = 3 # spliced_intron 17472694-17472804 (orient:-) max_ev_support = 2 scaffold_4 - intron 17472694-17472804 asmbl_43271 scaffold_4 - retained_intron 17472694-17472804 asmbl_43270 // Retained and Spliced Intron # retained_intron 17907555-17907735 (orient:-) max_ev_support = 1 # spliced_intron 17907555-17907735 (orient:-) max_ev_support = 1 scaffold_4 - intron 17907555-17907735 asmbl_43325 scaffold_4 - retained_intron 17907555-17907735 asmbl_43326,asmbl_43327 // Retained and Spliced Intron # retained_intron 17964335-17964393 (orient:-) max_ev_support = 1 # spliced_intron 17964335-17964393 (orient:-) max_ev_support = 1 scaffold_4 - intron 17964335-17964393 asmbl_43337 scaffold_4 - retained_intron 17964335-17964393 asmbl_43336 // Retained and Spliced Intron # retained_intron 18033877-18033924 (orient:-) max_ev_support = 1 # spliced_intron 18033877-18033924 (orient:-) max_ev_support = 1 scaffold_4 - intron 18033877-18033924 asmbl_43341 scaffold_4 - retained_intron 18033877-18033924 asmbl_43342 // Exon Skipping and Retention # skipped_exon 18529883-18530351 (orient:-) max_ev_support = 1 # retained_exon 18530187-18530230 (orient:-) max_ev_support = 1 scaffold_4 - retained_exons 18530187-18530230 asmbl_43379 scaffold_4 - intron_skips_exon 18529883-18530351 asmbl_43378 // Exon Skipping and Retention # skipped_exon 18555116-18558044 (orient:-) max_ev_support = 1 # retained_exon 18557617-18557778 (orient:-) max_ev_support = 2 scaffold_4 - retained_exons 18557617-18557778 asmbl_43380,asmbl_43382,asmbl_43383 scaffold_4 - intron_skips_exon 18555116-18558044 asmbl_43381 // Exon Skipping and Retention # skipped_exon 18931654-18932432 (orient:-) max_ev_support = 2 # retained_exon 18931853-18931954 (orient:-) max_ev_support = 2 scaffold_4 - retained_exons 18931853-18931954 asmbl_43392 scaffold_4 - intron_skips_exon 18931654-18932432 asmbl_43391 // Retained and Spliced Intron # retained_intron 19274656-19274833 (orient:-) max_ev_support = 2 # spliced_intron 19274656-19274833 (orient:-) max_ev_support = 2 scaffold_4 - intron 19274656-19274833 asmbl_43418,asmbl_43419,asmbl_43420 scaffold_4 - retained_intron 19274656-19274833 asmbl_43417 // Retained and Spliced Intron # retained_intron 19274897-19275126 (orient:-) max_ev_support = 2 # spliced_intron 19274897-19275126 (orient:-) max_ev_support = 2 scaffold_4 - intron 19274897-19275126 asmbl_43419,asmbl_43420 scaffold_4 - retained_intron 19274897-19275126 asmbl_43417,asmbl_43418 // Retained and Spliced Intron # retained_intron 19357077-19357176 (orient:-) max_ev_support = 2 # spliced_intron 19357077-19357176 (orient:-) max_ev_support = 2 scaffold_4 - intron 19357077-19357176 asmbl_43433,asmbl_43436,asmbl_43437,asmbl_43438,asmbl_43440 scaffold_4 - retained_intron 19357077-19357176 asmbl_43434,asmbl_43435,asmbl_43441 // Retained and Spliced Intron # retained_intron 19357212-19357317 (orient:-) max_ev_support = 2 # spliced_intron 19357212-19357317 (orient:-) max_ev_support = 2 scaffold_4 - intron 19357212-19357317 asmbl_43433,asmbl_43438,asmbl_43440,asmbl_43441 scaffold_4 - retained_intron 19357212-19357317 asmbl_43434,asmbl_43435,asmbl_43436,asmbl_43437 // Retained and Spliced Intron # retained_intron 19354316-19354420 (orient:-) max_ev_support = 1 # spliced_intron 19354316-19354420 (orient:-) max_ev_support = 2 scaffold_4 - intron 19354316-19354420 asmbl_43433,asmbl_43435,asmbl_43436,asmbl_43438 scaffold_4 - retained_intron 19354316-19354420 asmbl_43437,asmbl_43439,asmbl_43440 // Retained and Spliced Intron # retained_intron 19354511-19354584 (orient:-) max_ev_support = 1 # spliced_intron 19354511-19354584 (orient:-) max_ev_support = 2 scaffold_4 - intron 19354511-19354584 asmbl_43433,asmbl_43435,asmbl_43436,asmbl_43438,asmbl_43440 scaffold_4 - retained_intron 19354511-19354584 asmbl_43437,asmbl_43439 // Retained and Spliced Intron # retained_intron 19357562-19357800 (orient:-) max_ev_support = 1 # spliced_intron 19357562-19357800 (orient:-) max_ev_support = 2 scaffold_4 - intron 19357562-19357800 asmbl_43433,asmbl_43434,asmbl_43435,asmbl_43440 scaffold_4 - retained_intron 19357562-19357800 asmbl_43438 // Retained and Spliced Intron # retained_intron 19354741-19354943 (orient:-) max_ev_support = 1 # spliced_intron 19354741-19354943 (orient:-) max_ev_support = 2 scaffold_4 - intron 19354741-19354943 asmbl_43433,asmbl_43435,asmbl_43436,asmbl_43437,asmbl_43438,asmbl_43440 scaffold_4 - retained_intron 19354741-19354943 asmbl_43439 // Exon Skipping and Retention # skipped_exon 19524530-19526703 (orient:-) max_ev_support = 1 # retained_exon 19525666-19525696 (orient:-) max_ev_support = 2 scaffold_4 - retained_exons 19525666-19525696 asmbl_43444 scaffold_4 - intron_skips_exon 19524530-19526703 asmbl_43446,asmbl_43447 // Retained and Spliced Intron # retained_intron 19524379-19524448 (orient:-) max_ev_support = 1 # spliced_intron 19524379-19524448 (orient:-) max_ev_support = 2 scaffold_4 - intron 19524379-19524448 asmbl_43444,asmbl_43446 scaffold_4 - retained_intron 19524379-19524448 asmbl_43447 // Retained and Spliced Intron # retained_intron 19539841-19539875 (orient:-) max_ev_support = 3 # spliced_intron 19539841-19539875 (orient:-) max_ev_support = 1 scaffold_4 - intron 19539841-19539875 asmbl_43450 scaffold_4 - retained_intron 19539841-19539875 asmbl_43448 // Retained and Spliced Intron # retained_intron 19539846-19539879 (orient:-) max_ev_support = 3 # spliced_intron 19539846-19539879 (orient:-) max_ev_support = 1 scaffold_4 - intron 19539846-19539879 asmbl_43449 scaffold_4 - retained_intron 19539846-19539879 asmbl_43448 // Exon Skipping and Retention # skipped_exon 19587197-19587752 (orient:-) max_ev_support = 1 # retained_exon 19587419-19587593 (orient:-) max_ev_support = 2 scaffold_4 - retained_exons 19587419-19587593 asmbl_43453 scaffold_4 - intron_skips_exon 19587197-19587752 asmbl_43456,asmbl_43457,asmbl_43458 // Retained and Spliced Intron # retained_intron 19591639-19591710 (orient:-) max_ev_support = 1 # spliced_intron 19591639-19591710 (orient:-) max_ev_support = 1 scaffold_4 - intron 19591639-19591710 asmbl_43459 scaffold_4 - retained_intron 19591639-19591710 asmbl_43461 // Retained and Spliced Intron # retained_intron 19591656-19591710 (orient:-) max_ev_support = 1 # spliced_intron 19591656-19591710 (orient:-) max_ev_support = 1 scaffold_4 - intron 19591656-19591710 asmbl_43460 scaffold_4 - retained_intron 19591656-19591710 asmbl_43461 // Retained and Spliced Intron # retained_intron 19604777-19604824 (orient:-) max_ev_support = 1 # spliced_intron 19604777-19604824 (orient:-) max_ev_support = 1 scaffold_4 - intron 19604777-19604824 asmbl_43470 scaffold_4 - retained_intron 19604777-19604824 asmbl_43469 // Retained and Spliced Intron # retained_intron 19605273-19605368 (orient:-) max_ev_support = 1 # spliced_intron 19605273-19605368 (orient:-) max_ev_support = 1 scaffold_4 - intron 19605273-19605368 asmbl_43471 scaffold_4 - retained_intron 19605273-19605368 asmbl_43472 // Retained and Spliced Intron # retained_intron 19674267-19674337 (orient:-) max_ev_support = 1 # spliced_intron 19674267-19674337 (orient:-) max_ev_support = 1 scaffold_4 - intron 19674267-19674337 asmbl_43486 scaffold_4 - retained_intron 19674267-19674337 asmbl_43485 // Retained and Spliced Intron # retained_intron 26688-26808 (orient:+) max_ev_support = 3 # spliced_intron 26688-26808 (orient:+) max_ev_support = 1 scaffold_40 + intron 26688-26808 asmbl_43665 scaffold_40 + retained_intron 26688-26808 asmbl_43664 // Retained and Spliced Intron # retained_intron 829-875 (orient:-) max_ev_support = 1 # spliced_intron 829-875 (orient:-) max_ev_support = 1 scaffold_43 - intron 829-875 asmbl_43698 scaffold_43 - retained_intron 829-875 asmbl_43694,asmbl_43696 // Retained and Spliced Intron # retained_intron 829-922 (orient:-) max_ev_support = 1 # spliced_intron 829-922 (orient:-) max_ev_support = 1 scaffold_43 - intron 829-922 asmbl_43695 scaffold_43 - retained_intron 829-922 asmbl_43694,asmbl_43696 // Retained and Spliced Intron # retained_intron 782-922 (orient:-) max_ev_support = 1 # spliced_intron 782-922 (orient:-) max_ev_support = 1 scaffold_43 - intron 782-922 asmbl_43697 scaffold_43 - retained_intron 782-922 asmbl_43696 // Retained and Spliced Intron # retained_intron 4666-4794 (orient:-) max_ev_support = 1 # spliced_intron 4666-4794 (orient:-) max_ev_support = 1 scaffold_433 - intron 4666-4794 asmbl_43702 scaffold_433 - retained_intron 4666-4794 asmbl_43701 // Exon Skipping and Retention # skipped_exon 5026-6422 (orient:+) max_ev_support = 2 # retained_exon 5601-5738 (orient:+) max_ev_support = 2 scaffold_446 + retained_exons 5601-5738 asmbl_43716 scaffold_446 + intron_skips_exon 5026-6422 asmbl_43717 // Retained and Spliced Intron # retained_intron 3524-3609 (orient:+) max_ev_support = 2 # spliced_intron 3524-3609 (orient:+) max_ev_support = 2 scaffold_464 + intron 3524-3609 asmbl_43726 scaffold_464 + retained_intron 3524-3609 asmbl_43727 // Retained and Spliced Intron # retained_intron 107811-108165 (orient:-) max_ev_support = 1 # spliced_intron 107811-108165 (orient:-) max_ev_support = 1 scaffold_5 - intron 107811-108165 asmbl_43755 scaffold_5 - retained_intron 107811-108165 asmbl_43753,asmbl_43754 // Retained and Spliced Intron # retained_intron 108210-108423 (orient:-) max_ev_support = 1 # spliced_intron 108210-108423 (orient:-) max_ev_support = 1 scaffold_5 - intron 108210-108423 asmbl_43755 scaffold_5 - retained_intron 108210-108423 asmbl_43753,asmbl_43754 // Retained and Spliced Intron # retained_intron 108645-109025 (orient:-) max_ev_support = 1 # spliced_intron 108645-109025 (orient:-) max_ev_support = 1 scaffold_5 - intron 108645-109025 asmbl_43754,asmbl_43755 scaffold_5 - retained_intron 108645-109025 asmbl_43753 // Exon Skipping and Retention # skipped_exon 237071-239063 (orient:-) max_ev_support = 1 # retained_exon 238215-238772 (orient:-) max_ev_support = 3 scaffold_5 - retained_exons 238215-238313,238630-238772 asmbl_43761 scaffold_5 - intron_skips_exon 237071-239063 asmbl_43762 // Exon Skipping and Retention # skipped_exon 237502-239376 (orient:-) max_ev_support = 1 # retained_exon 238215-239201 (orient:-) max_ev_support = 3 scaffold_5 - retained_exons 238215-238313,238630-238772,239064-239201 asmbl_43761 scaffold_5 - intron_skips_exon 237502-239376 asmbl_43763 // Exon Skipping and Retention # skipped_exon 235742-238214 (orient:-) max_ev_support = 2 # retained_exon 236514-237070 (orient:-) max_ev_support = 1 scaffold_5 - retained_exons 236514-236612,236928-237070 asmbl_43762 scaffold_5 - intron_skips_exon 235742-238214 asmbl_43761 // Retained and Spliced Intron # retained_intron 420430-420561 (orient:-) max_ev_support = 1 # spliced_intron 420430-420561 (orient:-) max_ev_support = 1 scaffold_5 - intron 420430-420561 asmbl_43776 scaffold_5 - retained_intron 420430-420561 asmbl_43775 // Retained and Spliced Intron # retained_intron 420596-420639 (orient:-) max_ev_support = 1 # spliced_intron 420596-420639 (orient:-) max_ev_support = 1 scaffold_5 - intron 420596-420639 asmbl_43776 scaffold_5 - retained_intron 420596-420639 asmbl_43775 // Retained and Spliced Intron # retained_intron 939420-939502 (orient:-) max_ev_support = 2 # spliced_intron 939420-939502 (orient:-) max_ev_support = 1 scaffold_5 - intron 939420-939502 asmbl_43794 scaffold_5 - retained_intron 939420-939502 asmbl_43792 // Retained and Spliced Intron # retained_intron 939477-939513 (orient:-) max_ev_support = 2 # spliced_intron 939477-939513 (orient:-) max_ev_support = 1 scaffold_5 - intron 939477-939513 asmbl_43793 scaffold_5 - retained_intron 939477-939513 asmbl_43792 // Retained and Spliced Intron # retained_intron 966879-967824 (orient:-) max_ev_support = 6 # spliced_intron 966879-967824 (orient:-) max_ev_support = 1 scaffold_5 - intron 966879-967824 asmbl_43800 scaffold_5 - retained_intron 966879-967824 asmbl_43798 // Retained and Spliced Intron # retained_intron 1136209-1136301 (orient:-) max_ev_support = 1 # spliced_intron 1136209-1136301 (orient:-) max_ev_support = 1 scaffold_5 - intron 1136209-1136301 asmbl_43826 scaffold_5 - retained_intron 1136209-1136301 asmbl_43827 // Exon Skipping and Retention # skipped_exon 1227975-1228566 (orient:-) max_ev_support = 1 # retained_exon 1228071-1228148 (orient:-) max_ev_support = 2 scaffold_5 - retained_exons 1228071-1228148 asmbl_43840 scaffold_5 - intron_skips_exon 1227975-1228566 asmbl_43841 // Retained and Spliced Intron # retained_intron 1250555-1251453 (orient:-) max_ev_support = 4 # spliced_intron 1250555-1251453 (orient:-) max_ev_support = 2 scaffold_5 - intron 1250555-1251453 asmbl_43846,asmbl_43848 scaffold_5 - retained_intron 1250555-1251453 asmbl_43844 // Retained and Spliced Intron # retained_intron 1249035-1249146 (orient:-) max_ev_support = 2 # spliced_intron 1249035-1249146 (orient:-) max_ev_support = 2 scaffold_5 - intron 1249035-1249146 asmbl_43846,asmbl_43847 scaffold_5 - retained_intron 1249035-1249146 asmbl_43845 // Retained and Spliced Intron # retained_intron 1249677-1249957 (orient:-) max_ev_support = 1 # spliced_intron 1249677-1249957 (orient:-) max_ev_support = 2 scaffold_5 - intron 1249677-1249957 asmbl_43846,asmbl_43847 scaffold_5 - retained_intron 1249677-1249957 asmbl_43848 // Retained and Spliced Intron # retained_intron 1504160-1504271 (orient:-) max_ev_support = 1 # spliced_intron 1504160-1504271 (orient:-) max_ev_support = 3 scaffold_5 - intron 1504160-1504271 asmbl_43852 scaffold_5 - retained_intron 1504160-1504271 asmbl_43853 // Retained and Spliced Intron # retained_intron 1548461-1548523 (orient:-) max_ev_support = 2 # spliced_intron 1548461-1548523 (orient:-) max_ev_support = 1 scaffold_5 - intron 1548461-1548523 asmbl_43860 scaffold_5 - retained_intron 1548461-1548523 asmbl_43859 // Retained and Spliced Intron # retained_intron 1548524-1548586 (orient:-) max_ev_support = 2 # spliced_intron 1548524-1548586 (orient:-) max_ev_support = 1 scaffold_5 - intron 1548524-1548586 asmbl_43861 scaffold_5 - retained_intron 1548524-1548586 asmbl_43859 // Exon Skipping and Retention # skipped_exon 2166979-2168141 (orient:-) max_ev_support = 1 # retained_exon 2167501-2167719 (orient:-) max_ev_support = 2 scaffold_5 - retained_exons 2167501-2167719 asmbl_43874 scaffold_5 - intron_skips_exon 2166979-2168141 asmbl_43876 // Exon Skipping and Retention # skipped_exon 2173563-2176098 (orient:-) max_ev_support = 1 # retained_exon 2175608-2175728 (orient:-) max_ev_support = 2 scaffold_5 - retained_exons 2175608-2175728 asmbl_43874,asmbl_43876 scaffold_5 - intron_skips_exon 2173563-2176098 asmbl_43875 // Exon Skipping and Retention # skipped_exon 2166397-2167500 (orient:-) max_ev_support = 2 # retained_exon 2166760-2166924 (orient:-) max_ev_support = 1 scaffold_5 - retained_exons 2166760-2166924 asmbl_43875 scaffold_5 - intron_skips_exon 2166397-2167500 asmbl_43874 // Retained and Spliced Intron # retained_intron 2234179-2234653 (orient:-) max_ev_support = 3 # spliced_intron 2234179-2234653 (orient:-) max_ev_support = 1 scaffold_5 - intron 2234179-2234653 asmbl_43878,asmbl_43879 scaffold_5 - retained_intron 2234179-2234653 asmbl_43877 // Retained and Spliced Intron # retained_intron 2242543-2242602 (orient:-) max_ev_support = 3 # spliced_intron 2242543-2242602 (orient:-) max_ev_support = 1 scaffold_5 - intron 2242543-2242602 asmbl_43885 scaffold_5 - retained_intron 2242543-2242602 asmbl_43884 // Exon Skipping and Retention # skipped_exon 2532328-2533149 (orient:-) max_ev_support = 1 # retained_exon 2532794-2532892 (orient:-) max_ev_support = 2 scaffold_5 - retained_exons 2532794-2532892 asmbl_43889 scaffold_5 - intron_skips_exon 2532328-2533149 asmbl_43890 // Retained and Spliced Intron # retained_intron 2668980-2669850 (orient:-) max_ev_support = 3 # spliced_intron 2668980-2669850 (orient:-) max_ev_support = 2 scaffold_5 - intron 2668980-2669850 asmbl_43892,asmbl_43894,asmbl_43895 scaffold_5 - retained_intron 2668980-2669850 asmbl_43891,asmbl_43896,asmbl_43897 // Retained and Spliced Intron # retained_intron 2673418-2674638 (orient:-) max_ev_support = 2 # spliced_intron 2673418-2674638 (orient:-) max_ev_support = 1 scaffold_5 - intron 2673418-2674638 asmbl_43894,asmbl_43896,asmbl_43898 scaffold_5 - retained_intron 2673418-2674638 asmbl_43892,asmbl_43893,asmbl_43897 // Exon Skipping and Retention # skipped_exon 3591643-3592703 (orient:-) max_ev_support = 2 # retained_exon 3591749-3591793 (orient:-) max_ev_support = 1 scaffold_5 - retained_exons 3591749-3591793 asmbl_43926 scaffold_5 - intron_skips_exon 3591643-3592703 asmbl_43922 // Exon Skipping and Retention # skipped_exon 3591643-3592652 (orient:-) max_ev_support = 2 # retained_exon 3591749-3591793 (orient:-) max_ev_support = 1 scaffold_5 - retained_exons 3591749-3591793 asmbl_43926 scaffold_5 - intron_skips_exon 3591643-3592652 asmbl_43923,asmbl_43925 // Retained and Spliced Intron # retained_intron 3935983-3936174 (orient:-) max_ev_support = 1 # spliced_intron 3935983-3936174 (orient:-) max_ev_support = 1 scaffold_5 - intron 3935983-3936174 asmbl_43934 scaffold_5 - retained_intron 3935983-3936174 asmbl_43933 // Exon Skipping and Retention # skipped_exon 4628574-4630113 (orient:-) max_ev_support = 2 # retained_exon 4628791-4628841 (orient:-) max_ev_support = 2 scaffold_5 - retained_exons 4628791-4628841 asmbl_43965 scaffold_5 - intron_skips_exon 4628574-4630113 asmbl_43966 // Exon Skipping and Retention # skipped_exon 4683007-4684210 (orient:-) max_ev_support = 2 # retained_exon 4683536-4683553 (orient:-) max_ev_support = 2 scaffold_5 - retained_exons 4683536-4683553 asmbl_43983,asmbl_43995 scaffold_5 - intron_skips_exon 4683007-4684210 asmbl_43985,asmbl_43994 // Retained and Spliced Intron # retained_intron 4683007-4683535 (orient:-) max_ev_support = 2 # spliced_intron 4683007-4683535 (orient:-) max_ev_support = 2 scaffold_5 - intron 4683007-4683535 asmbl_43983,asmbl_43989,asmbl_43992,asmbl_43993,asmbl_43995 scaffold_5 - retained_intron 4683007-4683535 asmbl_43984 // Exon Skipping and Retention # skipped_exon 4683554-4684210 (orient:-) max_ev_support = 2 # retained_exon 4683950-4683961 (orient:-) max_ev_support = 1 scaffold_5 - retained_exons 4683950-4683961 asmbl_43989,asmbl_43992,asmbl_43993 scaffold_5 - intron_skips_exon 4683554-4684210 asmbl_43983,asmbl_43995 // Exon Skipping and Retention # skipped_exon 4687692-4689530 (orient:-) max_ev_support = 2 # retained_exon 4688419-4688616 (orient:-) max_ev_support = 1 scaffold_5 - retained_exons 4688419-4688616 asmbl_43992,asmbl_43994,asmbl_43995 scaffold_5 - intron_skips_exon 4687692-4689530 asmbl_43986 // Exon Skipping and Retention # skipped_exon 4688617-4690762 (orient:-) max_ev_support = 2 # retained_exon 4689531-4689818 (orient:-) max_ev_support = 1 scaffold_5 - retained_exons 4689531-4689818 asmbl_43992,asmbl_43994,asmbl_43995 scaffold_5 - intron_skips_exon 4688617-4690762 asmbl_43983,asmbl_43985,asmbl_43989,asmbl_43991,asmbl_43993 // Retained and Spliced Intron # retained_intron 4729823-4729920 (orient:-) max_ev_support = 1 # spliced_intron 4729823-4729920 (orient:-) max_ev_support = 2 scaffold_5 - intron 4729823-4729920 asmbl_44003 scaffold_5 - retained_intron 4729823-4729920 asmbl_44005 // Retained and Spliced Intron # retained_intron 5026994-5027082 (orient:-) max_ev_support = 1 # spliced_intron 5026994-5027082 (orient:-) max_ev_support = 2 scaffold_5 - intron 5026994-5027082 asmbl_44021,asmbl_44023 scaffold_5 - retained_intron 5026994-5027082 asmbl_44022 // Retained and Spliced Intron # retained_intron 5039918-5039996 (orient:-) max_ev_support = 2 # spliced_intron 5039918-5039996 (orient:-) max_ev_support = 3 scaffold_5 - intron 5039918-5039996 asmbl_44024 scaffold_5 - retained_intron 5039918-5039996 asmbl_44025 // Retained and Spliced Intron # retained_intron 5063957-5064056 (orient:-) max_ev_support = 2 # spliced_intron 5063957-5064056 (orient:-) max_ev_support = 3 scaffold_5 - intron 5063957-5064056 asmbl_44027 scaffold_5 - retained_intron 5063957-5064056 asmbl_44028 // Retained and Spliced Intron # retained_intron 5063957-5064081 (orient:-) max_ev_support = 2 # spliced_intron 5063957-5064081 (orient:-) max_ev_support = 3 scaffold_5 - intron 5063957-5064081 asmbl_44026 scaffold_5 - retained_intron 5063957-5064081 asmbl_44028 // Retained and Spliced Intron # retained_intron 5064190-5064837 (orient:-) max_ev_support = 2 # spliced_intron 5064190-5064837 (orient:-) max_ev_support = 3 scaffold_5 - intron 5064190-5064837 asmbl_44026,asmbl_44027 scaffold_5 - retained_intron 5064190-5064837 asmbl_44028 // Retained and Spliced Intron # retained_intron 5622048-5622220 (orient:-) max_ev_support = 2 # spliced_intron 5622048-5622220 (orient:-) max_ev_support = 1 scaffold_5 - intron 5622048-5622220 asmbl_44051,asmbl_44052,asmbl_44053 scaffold_5 - retained_intron 5622048-5622220 asmbl_44048 // Retained and Spliced Intron # retained_intron 5838814-5839033 (orient:-) max_ev_support = 2 # spliced_intron 5838814-5839033 (orient:-) max_ev_support = 3 scaffold_5 - intron 5838814-5839033 asmbl_44058 scaffold_5 - retained_intron 5838814-5839033 asmbl_44059 // Retained and Spliced Intron # retained_intron 5985954-5986256 (orient:-) max_ev_support = 4 # spliced_intron 5985954-5986256 (orient:-) max_ev_support = 2 scaffold_5 - intron 5985954-5986256 asmbl_44070 scaffold_5 - retained_intron 5985954-5986256 asmbl_44069 // Retained and Spliced Intron # retained_intron 6012524-6013080 (orient:-) max_ev_support = 2 # spliced_intron 6012524-6013080 (orient:-) max_ev_support = 2 scaffold_5 - intron 6012524-6013080 asmbl_44077,asmbl_44081 scaffold_5 - retained_intron 6012524-6013080 asmbl_44078 // Retained and Spliced Intron # retained_intron 6578599-6580344 (orient:-) max_ev_support = 2 # spliced_intron 6578599-6580344 (orient:-) max_ev_support = 2 scaffold_5 - intron 6578599-6580344 asmbl_44097 scaffold_5 - retained_intron 6578599-6580344 asmbl_44098 // Retained and Spliced Intron # retained_intron 6576837-6576949 (orient:-) max_ev_support = 2 # spliced_intron 6576837-6576949 (orient:-) max_ev_support = 2 scaffold_5 - intron 6576837-6576949 asmbl_44097,asmbl_44098 scaffold_5 - retained_intron 6576837-6576949 asmbl_44099 // Retained and Spliced Intron # retained_intron 6584076-6584215 (orient:-) max_ev_support = 1 # spliced_intron 6584076-6584215 (orient:-) max_ev_support = 1 scaffold_5 - intron 6584076-6584215 asmbl_44105,asmbl_44106 scaffold_5 - retained_intron 6584076-6584215 asmbl_44107 // Retained and Spliced Intron # retained_intron 6629852-6630029 (orient:-) max_ev_support = 2 # spliced_intron 6629852-6630029 (orient:-) max_ev_support = 2 scaffold_5 - intron 6629852-6630029 asmbl_44122,asmbl_44123 scaffold_5 - retained_intron 6629852-6630029 asmbl_44121 // Retained and Spliced Intron # retained_intron 6708882-6708998 (orient:-) max_ev_support = 3 # spliced_intron 6708882-6708998 (orient:-) max_ev_support = 2 scaffold_5 - intron 6708882-6708998 asmbl_44131 scaffold_5 - retained_intron 6708882-6708998 asmbl_44130,asmbl_44132 // Retained and Spliced Intron # retained_intron 6708613-6708819 (orient:-) max_ev_support = 2 # spliced_intron 6708613-6708819 (orient:-) max_ev_support = 3 scaffold_5 - intron 6708613-6708819 asmbl_44130,asmbl_44131 scaffold_5 - retained_intron 6708613-6708819 asmbl_44132 // Retained and Spliced Intron # retained_intron 6737990-6738085 (orient:-) max_ev_support = 2 # spliced_intron 6737990-6738085 (orient:-) max_ev_support = 1 scaffold_5 - intron 6737990-6738085 asmbl_44138 scaffold_5 - retained_intron 6737990-6738085 asmbl_44135 // Retained and Spliced Intron # retained_intron 6835252-6835402 (orient:-) max_ev_support = 1 # spliced_intron 6835252-6835402 (orient:-) max_ev_support = 2 scaffold_5 - intron 6835252-6835402 asmbl_44150 scaffold_5 - retained_intron 6835252-6835402 asmbl_44151 // Retained and Spliced Intron # retained_intron 6853682-6853716 (orient:-) max_ev_support = 1 # spliced_intron 6853682-6853716 (orient:-) max_ev_support = 1 scaffold_5 - intron 6853682-6853716 asmbl_44154 scaffold_5 - retained_intron 6853682-6853716 asmbl_44153 // Exon Skipping and Retention # skipped_exon 7410771-7411904 (orient:-) max_ev_support = 1 # retained_exon 7411154-7411201 (orient:-) max_ev_support = 1 scaffold_5 - retained_exons 7411154-7411201 asmbl_44175,asmbl_44176 scaffold_5 - intron_skips_exon 7410771-7411904 asmbl_44174 // Retained and Spliced Intron # retained_intron 7710260-7710370 (orient:-) max_ev_support = 2 # spliced_intron 7710260-7710370 (orient:-) max_ev_support = 2 scaffold_5 - intron 7710260-7710370 asmbl_44188 scaffold_5 - retained_intron 7710260-7710370 asmbl_44187,asmbl_44189 // Retained and Spliced Intron # retained_intron 7711197-7711308 (orient:-) max_ev_support = 2 # spliced_intron 7711197-7711308 (orient:-) max_ev_support = 1 scaffold_5 - intron 7711197-7711308 asmbl_44189 scaffold_5 - retained_intron 7711197-7711308 asmbl_44187,asmbl_44188 // Retained and Spliced Intron # retained_intron 8119952-8121390 (orient:-) max_ev_support = 2 # spliced_intron 8119952-8121390 (orient:-) max_ev_support = 2 scaffold_5 - intron 8119952-8121390 asmbl_44197 scaffold_5 - retained_intron 8119952-8121390 asmbl_44198 // Retained and Spliced Intron # retained_intron 8538359-8538561 (orient:-) max_ev_support = 2 # spliced_intron 8538359-8538561 (orient:-) max_ev_support = 2 scaffold_5 - intron 8538359-8538561 asmbl_44212,asmbl_44213,asmbl_44214,asmbl_44215,asmbl_44216,asmbl_44217,asmbl_44218 scaffold_5 - retained_intron 8538359-8538561 asmbl_44211 // Retained and Spliced Intron # retained_intron 8539438-8539884 (orient:-) max_ev_support = 1 # spliced_intron 8539438-8539884 (orient:-) max_ev_support = 2 scaffold_5 - intron 8539438-8539884 asmbl_44212,asmbl_44217 scaffold_5 - retained_intron 8539438-8539884 asmbl_44216,asmbl_44219 // Retained and Spliced Intron # retained_intron 8539438-8539947 (orient:-) max_ev_support = 1 # spliced_intron 8539438-8539947 (orient:-) max_ev_support = 2 scaffold_5 - intron 8539438-8539947 asmbl_44214,asmbl_44215,asmbl_44218 scaffold_5 - retained_intron 8539438-8539947 asmbl_44216,asmbl_44219 // Retained and Spliced Intron # retained_intron 8554846-8554950 (orient:-) max_ev_support = 3 # spliced_intron 8554846-8554950 (orient:-) max_ev_support = 1 scaffold_5 - intron 8554846-8554950 asmbl_44222 scaffold_5 - retained_intron 8554846-8554950 asmbl_44221 // Retained and Spliced Intron # retained_intron 8776863-8776953 (orient:-) max_ev_support = 2 # spliced_intron 8776863-8776953 (orient:-) max_ev_support = 2 scaffold_5 - intron 8776863-8776953 asmbl_44241 scaffold_5 - retained_intron 8776863-8776953 asmbl_44242 // Retained and Spliced Intron # retained_intron 8917573-8917791 (orient:-) max_ev_support = 2 # spliced_intron 8917573-8917791 (orient:-) max_ev_support = 2 scaffold_5 - intron 8917573-8917791 asmbl_44257 scaffold_5 - retained_intron 8917573-8917791 asmbl_44256 // Retained and Spliced Intron # retained_intron 9079063-9079449 (orient:-) max_ev_support = 1 # spliced_intron 9079063-9079449 (orient:-) max_ev_support = 3 scaffold_5 - intron 9079063-9079449 asmbl_44263 scaffold_5 - retained_intron 9079063-9079449 asmbl_44264 // Retained and Spliced Intron # retained_intron 9582795-9582912 (orient:-) max_ev_support = 1 # spliced_intron 9582795-9582912 (orient:-) max_ev_support = 2 scaffold_5 - intron 9582795-9582912 asmbl_44291 scaffold_5 - retained_intron 9582795-9582912 asmbl_44292 // Retained and Spliced Intron # retained_intron 9704092-9704702 (orient:-) max_ev_support = 2 # spliced_intron 9704092-9704702 (orient:-) max_ev_support = 2 scaffold_5 - intron 9704092-9704702 asmbl_44293 scaffold_5 - retained_intron 9704092-9704702 asmbl_44296,asmbl_44298 // Retained and Spliced Intron # retained_intron 9704095-9704464 (orient:-) max_ev_support = 2 # spliced_intron 9704095-9704464 (orient:-) max_ev_support = 2 scaffold_5 - intron 9704095-9704464 asmbl_44294,asmbl_44299 scaffold_5 - retained_intron 9704095-9704464 asmbl_44296,asmbl_44298 // Retained and Spliced Intron # retained_intron 9704095-9704702 (orient:-) max_ev_support = 2 # spliced_intron 9704095-9704702 (orient:-) max_ev_support = 2 scaffold_5 - intron 9704095-9704702 asmbl_44295 scaffold_5 - retained_intron 9704095-9704702 asmbl_44296,asmbl_44298 // Retained and Spliced Intron # retained_intron 9853206-9853277 (orient:-) max_ev_support = 1 # spliced_intron 9853206-9853277 (orient:-) max_ev_support = 1 scaffold_5 - intron 9853206-9853277 asmbl_44306 scaffold_5 - retained_intron 9853206-9853277 asmbl_44305 // Retained and Spliced Intron # retained_intron 9853379-9853480 (orient:-) max_ev_support = 3 # spliced_intron 9853379-9853480 (orient:-) max_ev_support = 1 scaffold_5 - intron 9853379-9853480 asmbl_44306 scaffold_5 - retained_intron 9853379-9853480 asmbl_44305 // Exon Skipping and Retention # skipped_exon 10145770-10146230 (orient:-) max_ev_support = 1 # retained_exon 10145887-10145990 (orient:-) max_ev_support = 3 scaffold_5 - retained_exons 10145887-10145990 asmbl_44315 scaffold_5 - intron_skips_exon 10145770-10146230 asmbl_44316 // Exon Skipping and Retention # skipped_exon 10183015-10183671 (orient:-) max_ev_support = 1 # retained_exon 10183252-10183263 (orient:-) max_ev_support = 1 scaffold_5 - retained_exons 10183252-10183263 asmbl_44318 scaffold_5 - intron_skips_exon 10183015-10183671 asmbl_44319 // Retained and Spliced Intron # retained_intron 10195272-10195388 (orient:-) max_ev_support = 2 # spliced_intron 10195272-10195388 (orient:-) max_ev_support = 2 scaffold_5 - intron 10195272-10195388 asmbl_44321,asmbl_44322,asmbl_44323,asmbl_44324,asmbl_44326 scaffold_5 - retained_intron 10195272-10195388 asmbl_44320,asmbl_44325 // Retained and Spliced Intron # retained_intron 10197865-10198044 (orient:-) max_ev_support = 2 # spliced_intron 10197865-10198044 (orient:-) max_ev_support = 1 scaffold_5 - intron 10197865-10198044 asmbl_44326 scaffold_5 - retained_intron 10197865-10198044 asmbl_44320,asmbl_44321,asmbl_44322,asmbl_44323,asmbl_44327 // Retained and Spliced Intron # retained_intron 10196215-10196313 (orient:-) max_ev_support = 1 # spliced_intron 10196215-10196313 (orient:-) max_ev_support = 2 scaffold_5 - intron 10196215-10196313 asmbl_44320,asmbl_44321,asmbl_44323,asmbl_44324,asmbl_44326,asmbl_44327 scaffold_5 - retained_intron 10196215-10196313 asmbl_44322 // Retained and Spliced Intron # retained_intron 10196467-10196618 (orient:-) max_ev_support = 1 # spliced_intron 10196467-10196618 (orient:-) max_ev_support = 2 scaffold_5 - intron 10196467-10196618 asmbl_44320,asmbl_44321,asmbl_44322,asmbl_44326,asmbl_44327 scaffold_5 - retained_intron 10196467-10196618 asmbl_44323 // Retained and Spliced Intron # retained_intron 10196467-10198044 (orient:-) max_ev_support = 1 # spliced_intron 10196467-10198044 (orient:-) max_ev_support = 1 scaffold_5 - intron 10196467-10198044 asmbl_44324 scaffold_5 - retained_intron 10196467-10198044 asmbl_44323 // Retained and Spliced Intron # retained_intron 10195447-10195577 (orient:-) max_ev_support = 1 # spliced_intron 10195447-10195577 (orient:-) max_ev_support = 2 scaffold_5 - intron 10195447-10195577 asmbl_44320,asmbl_44321,asmbl_44322,asmbl_44323,asmbl_44324,asmbl_44326 scaffold_5 - retained_intron 10195447-10195577 asmbl_44325 // Retained and Spliced Intron # retained_intron 10195750-10195849 (orient:-) max_ev_support = 1 # spliced_intron 10195750-10195849 (orient:-) max_ev_support = 2 scaffold_5 - intron 10195750-10195849 asmbl_44320,asmbl_44321,asmbl_44322,asmbl_44323,asmbl_44324,asmbl_44326,asmbl_44327 scaffold_5 - retained_intron 10195750-10195849 asmbl_44325 // Exon Skipping and Retention # skipped_exon 10196467-10198044 (orient:-) max_ev_support = 1 # retained_exon 10196619-10197864 (orient:-) max_ev_support = 1 scaffold_5 - retained_exons 10196619-10197864 asmbl_44326 scaffold_5 - intron_skips_exon 10196467-10198044 asmbl_44324 // Retained and Spliced Intron # retained_intron 10195945-10196056 (orient:-) max_ev_support = 1 # spliced_intron 10195945-10196056 (orient:-) max_ev_support = 2 scaffold_5 - intron 10195945-10196056 asmbl_44320,asmbl_44321,asmbl_44322,asmbl_44323,asmbl_44324,asmbl_44326 scaffold_5 - retained_intron 10195945-10196056 asmbl_44327 // Retained and Spliced Intron # retained_intron 10251374-10251506 (orient:-) max_ev_support = 2 # spliced_intron 10251374-10251506 (orient:-) max_ev_support = 2 scaffold_5 - intron 10251374-10251506 asmbl_44331,asmbl_44334 scaffold_5 - retained_intron 10251374-10251506 asmbl_44332,asmbl_44333 // Retained and Spliced Intron # retained_intron 10253401-10253602 (orient:-) max_ev_support = 2 # spliced_intron 10253401-10253602 (orient:-) max_ev_support = 2 scaffold_5 - intron 10253401-10253602 asmbl_44331,asmbl_44333 scaffold_5 - retained_intron 10253401-10253602 asmbl_44332,asmbl_44334 // Retained and Spliced Intron # retained_intron 10290152-10290283 (orient:-) max_ev_support = 1 # spliced_intron 10290152-10290283 (orient:-) max_ev_support = 2 scaffold_5 - intron 10290152-10290283 asmbl_44335 scaffold_5 - retained_intron 10290152-10290283 asmbl_44336 // Retained and Spliced Intron # retained_intron 10290524-10290823 (orient:-) max_ev_support = 1 # spliced_intron 10290524-10290823 (orient:-) max_ev_support = 2 scaffold_5 - intron 10290524-10290823 asmbl_44335 scaffold_5 - retained_intron 10290524-10290823 asmbl_44336 // Retained and Spliced Intron # retained_intron 10296210-10296333 (orient:-) max_ev_support = 1 # spliced_intron 10296210-10296333 (orient:-) max_ev_support = 2 scaffold_5 - intron 10296210-10296333 asmbl_44337,asmbl_44341,asmbl_44342 scaffold_5 - retained_intron 10296210-10296333 asmbl_44340 // Retained and Spliced Intron # retained_intron 10304680-10304767 (orient:-) max_ev_support = 1 # spliced_intron 10304680-10304767 (orient:-) max_ev_support = 3 scaffold_5 - intron 10304680-10304767 asmbl_44343,asmbl_44345 scaffold_5 - retained_intron 10304680-10304767 asmbl_44344 // Retained and Spliced Intron # retained_intron 10303566-10303683 (orient:-) max_ev_support = 1 # spliced_intron 10303566-10303683 (orient:-) max_ev_support = 3 scaffold_5 - intron 10303566-10303683 asmbl_44343,asmbl_44344 scaffold_5 - retained_intron 10303566-10303683 asmbl_44345 // Exon Skipping and Retention # skipped_exon 10381045-10381466 (orient:-) max_ev_support = 1 # retained_exon 10381188-10381380 (orient:-) max_ev_support = 1 scaffold_5 - retained_exons 10381188-10381380 asmbl_44351,asmbl_44352,asmbl_44353,asmbl_44356 scaffold_5 - intron_skips_exon 10381045-10381466 asmbl_44354 // Retained and Spliced Intron # retained_intron 10384008-10384137 (orient:-) max_ev_support = 1 # spliced_intron 10384008-10384137 (orient:-) max_ev_support = 1 scaffold_5 - intron 10384008-10384137 asmbl_44352 scaffold_5 - retained_intron 10384008-10384137 asmbl_44351 // Retained and Spliced Intron # retained_intron 10382183-10382274 (orient:-) max_ev_support = 1 # spliced_intron 10382183-10382274 (orient:-) max_ev_support = 1 scaffold_5 - intron 10382183-10382274 asmbl_44351,asmbl_44352 scaffold_5 - retained_intron 10382183-10382274 asmbl_44353,asmbl_44356 // Retained and Spliced Intron # retained_intron 10380174-10380270 (orient:-) max_ev_support = 1 # spliced_intron 10380174-10380270 (orient:-) max_ev_support = 1 scaffold_5 - intron 10380174-10380270 asmbl_44351,asmbl_44352,asmbl_44353,asmbl_44354,asmbl_44355 scaffold_5 - retained_intron 10380174-10380270 asmbl_44356 // Exon Skipping and Retention # skipped_exon 10419526-10422301 (orient:-) max_ev_support = 2 # retained_exon 10421235-10421280 (orient:-) max_ev_support = 2 scaffold_5 - retained_exons 10421235-10421280 asmbl_44357 scaffold_5 - intron_skips_exon 10419526-10422301 asmbl_44358 // Retained and Spliced Intron # retained_intron 10534403-10534505 (orient:-) max_ev_support = 1 # spliced_intron 10534403-10534505 (orient:-) max_ev_support = 2 scaffold_5 - intron 10534403-10534505 asmbl_44360 scaffold_5 - retained_intron 10534403-10534505 asmbl_44361 // Retained and Spliced Intron # retained_intron 10534403-10534511 (orient:-) max_ev_support = 1 # spliced_intron 10534403-10534511 (orient:-) max_ev_support = 1 scaffold_5 - intron 10534403-10534511 asmbl_44362 scaffold_5 - retained_intron 10534403-10534511 asmbl_44361 // Retained and Spliced Intron # retained_intron 10536961-10538269 (orient:-) max_ev_support = 2 # spliced_intron 10536961-10538269 (orient:-) max_ev_support = 2 scaffold_5 - intron 10536961-10538269 asmbl_44363,asmbl_44367,asmbl_44368 scaffold_5 - retained_intron 10536961-10538269 asmbl_44364,asmbl_44365,asmbl_44366 // Exon Skipping and Retention # skipped_exon 10889948-10890320 (orient:-) max_ev_support = 2 # retained_exon 10890168-10890244 (orient:-) max_ev_support = 2 scaffold_5 - retained_exons 10890168-10890244 asmbl_44384,asmbl_44385 scaffold_5 - intron_skips_exon 10889948-10890320 asmbl_44383,asmbl_44386 // Retained and Spliced Intron # retained_intron 11016319-11016635 (orient:-) max_ev_support = 2 # spliced_intron 11016319-11016635 (orient:-) max_ev_support = 1 scaffold_5 - intron 11016319-11016635 asmbl_44397 scaffold_5 - retained_intron 11016319-11016635 asmbl_44396 // Retained and Spliced Intron # retained_intron 11434446-11434524 (orient:-) max_ev_support = 1 # spliced_intron 11434446-11434524 (orient:-) max_ev_support = 2 scaffold_5 - intron 11434446-11434524 asmbl_44407 scaffold_5 - retained_intron 11434446-11434524 asmbl_44408 // Retained and Spliced Intron # retained_intron 11630266-11630428 (orient:-) max_ev_support = 1 # spliced_intron 11630266-11630428 (orient:-) max_ev_support = 1 scaffold_5 - intron 11630266-11630428 asmbl_44416,asmbl_44420 scaffold_5 - retained_intron 11630266-11630428 asmbl_44415,asmbl_44419 // Retained and Spliced Intron # retained_intron 11630266-11630481 (orient:-) max_ev_support = 1 # spliced_intron 11630266-11630481 (orient:-) max_ev_support = 1 scaffold_5 - intron 11630266-11630481 asmbl_44417 scaffold_5 - retained_intron 11630266-11630481 asmbl_44415,asmbl_44419 // Retained and Spliced Intron # retained_intron 11630266-11631086 (orient:-) max_ev_support = 1 # spliced_intron 11630266-11631086 (orient:-) max_ev_support = 1 scaffold_5 - intron 11630266-11631086 asmbl_44418 scaffold_5 - retained_intron 11630266-11631086 asmbl_44415,asmbl_44419 // Retained and Spliced Intron # retained_intron 11630546-11631086 (orient:-) max_ev_support = 1 # spliced_intron 11630546-11631086 (orient:-) max_ev_support = 1 scaffold_5 - intron 11630546-11631086 asmbl_44417,asmbl_44420 scaffold_5 - retained_intron 11630546-11631086 asmbl_44415,asmbl_44416,asmbl_44419 // Exon Skipping and Retention # skipped_exon 11630266-11631086 (orient:-) max_ev_support = 1 # retained_exon 11630482-11630545 (orient:-) max_ev_support = 1 scaffold_5 - retained_exons 11630482-11630545 asmbl_44417 scaffold_5 - intron_skips_exon 11630266-11631086 asmbl_44418 // Exon Skipping and Retention # skipped_exon 11990788-11991389 (orient:-) max_ev_support = 1 # retained_exon 11990896-11990961 (orient:-) max_ev_support = 2 scaffold_5 - retained_exons 11990896-11990961 asmbl_44427,asmbl_44428,asmbl_44429,asmbl_44431,asmbl_44432,asmbl_44435 scaffold_5 - intron_skips_exon 11990788-11991389 asmbl_44430,asmbl_44433,asmbl_44434 // Exon Skipping and Retention # skipped_exon 11991739-11993287 (orient:-) max_ev_support = 2 # retained_exon 11992076-11993127 (orient:-) max_ev_support = 2 scaffold_5 - retained_exons 11992076-11992232,11993058-11993127 asmbl_44427,asmbl_44433 scaffold_5 - intron_skips_exon 11991739-11993287 asmbl_44428,asmbl_44434 // Retained and Spliced Intron # retained_intron 11991739-11992075 (orient:-) max_ev_support = 1 # spliced_intron 11991739-11992075 (orient:-) max_ev_support = 2 scaffold_5 - intron 11991739-11992075 asmbl_44427,asmbl_44433 scaffold_5 - retained_intron 11991739-11992075 asmbl_44431,asmbl_44432,asmbl_44435 // Retained and Spliced Intron # retained_intron 11991739-11992176 (orient:-) max_ev_support = 1 # spliced_intron 11991739-11992176 (orient:-) max_ev_support = 1 scaffold_5 - intron 11991739-11992176 asmbl_44429,asmbl_44430 scaffold_5 - retained_intron 11991739-11992176 asmbl_44431,asmbl_44432,asmbl_44435 // Retained and Spliced Intron # retained_intron 11992233-11993057 (orient:-) max_ev_support = 1 # spliced_intron 11992233-11993057 (orient:-) max_ev_support = 2 scaffold_5 - intron 11992233-11993057 asmbl_44427,asmbl_44429,asmbl_44430,asmbl_44431,asmbl_44433 scaffold_5 - retained_intron 11992233-11993057 asmbl_44432,asmbl_44435 // Retained and Spliced Intron # retained_intron 11991739-11993287 (orient:-) max_ev_support = 1 # spliced_intron 11991739-11993287 (orient:-) max_ev_support = 2 scaffold_5 - intron 11991739-11993287 asmbl_44428,asmbl_44434 scaffold_5 - retained_intron 11991739-11993287 asmbl_44435 // Retained and Spliced Intron # retained_intron 11993128-11993287 (orient:-) max_ev_support = 1 # spliced_intron 11993128-11993287 (orient:-) max_ev_support = 2 scaffold_5 - intron 11993128-11993287 asmbl_44427,asmbl_44429,asmbl_44430,asmbl_44431,asmbl_44432,asmbl_44433 scaffold_5 - retained_intron 11993128-11993287 asmbl_44435 // Retained and Spliced Intron # retained_intron 11990962-11991389 (orient:-) max_ev_support = 1 # spliced_intron 11990962-11991389 (orient:-) max_ev_support = 2 scaffold_5 - intron 11990962-11991389 asmbl_44427,asmbl_44428,asmbl_44429,asmbl_44431,asmbl_44432,asmbl_44435 scaffold_5 - retained_intron 11990962-11991389 asmbl_44436 // Retained and Spliced Intron # retained_intron 12258749-12258866 (orient:-) max_ev_support = 2 # spliced_intron 12258749-12258866 (orient:-) max_ev_support = 2 scaffold_5 - intron 12258749-12258866 asmbl_44443 scaffold_5 - retained_intron 12258749-12258866 asmbl_44442 // Exon Skipping and Retention # skipped_exon 12532379-12533784 (orient:-) max_ev_support = 1 # retained_exon 12532513-12533674 (orient:-) max_ev_support = 1 scaffold_5 - retained_exons 12532513-12532710,12532805-12532926,12533049-12533222,12533309-12533390,12533533-12533674 asmbl_44463,asmbl_44464,asmbl_44466 scaffold_5 - intron_skips_exon 12532379-12533784 asmbl_44465 // Retained and Spliced Intron # retained_intron 12573137-12573215 (orient:-) max_ev_support = 1 # spliced_intron 12573137-12573215 (orient:-) max_ev_support = 2 scaffold_5 - intron 12573137-12573215 asmbl_44475 scaffold_5 - retained_intron 12573137-12573215 asmbl_44476 // Exon Skipping and Retention # skipped_exon 12728011-12729165 (orient:-) max_ev_support = 1 # retained_exon 12728581-12728691 (orient:-) max_ev_support = 1 scaffold_5 - retained_exons 12728581-12728691 asmbl_44478 scaffold_5 - intron_skips_exon 12728011-12729165 asmbl_44477 // Retained and Spliced Intron # retained_intron 12755181-12755356 (orient:-) max_ev_support = 3 # spliced_intron 12755181-12755356 (orient:-) max_ev_support = 2 scaffold_5 - intron 12755181-12755356 asmbl_44484 scaffold_5 - retained_intron 12755181-12755356 asmbl_44483 // Retained and Spliced Intron # retained_intron 12915260-12915370 (orient:-) max_ev_support = 1 # spliced_intron 12915260-12915370 (orient:-) max_ev_support = 2 scaffold_5 - intron 12915260-12915370 asmbl_44491,asmbl_44492 scaffold_5 - retained_intron 12915260-12915370 asmbl_44493 // Exon Skipping and Retention # skipped_exon 12928980-12930381 (orient:-) max_ev_support = 3 # retained_exon 12929850-12929874 (orient:-) max_ev_support = 1 scaffold_5 - retained_exons 12929850-12929874 asmbl_44499 scaffold_5 - intron_skips_exon 12928980-12930381 asmbl_44496 // Retained and Spliced Intron # retained_intron 12958540-12958648 (orient:-) max_ev_support = 1 # spliced_intron 12958540-12958648 (orient:-) max_ev_support = 1 scaffold_5 - intron 12958540-12958648 asmbl_44505 scaffold_5 - retained_intron 12958540-12958648 asmbl_44504 // Retained and Spliced Intron # retained_intron 13316098-13316220 (orient:-) max_ev_support = 1 # spliced_intron 13316098-13316220 (orient:-) max_ev_support = 1 scaffold_5 - intron 13316098-13316220 asmbl_44542 scaffold_5 - retained_intron 13316098-13316220 asmbl_44540 // Retained and Spliced Intron # retained_intron 13316127-13316220 (orient:-) max_ev_support = 1 # spliced_intron 13316127-13316220 (orient:-) max_ev_support = 1 scaffold_5 - intron 13316127-13316220 asmbl_44537,asmbl_44539 scaffold_5 - retained_intron 13316127-13316220 asmbl_44540 // Retained and Spliced Intron # retained_intron 13316252-13316346 (orient:-) max_ev_support = 1 # spliced_intron 13316252-13316346 (orient:-) max_ev_support = 1 scaffold_5 - intron 13316252-13316346 asmbl_44537,asmbl_44539,asmbl_44542 scaffold_5 - retained_intron 13316252-13316346 asmbl_44540 // Retained and Spliced Intron # retained_intron 13313903-13313990 (orient:-) max_ev_support = 1 # spliced_intron 13313903-13313990 (orient:-) max_ev_support = 1 scaffold_5 - intron 13313903-13313990 asmbl_44537,asmbl_44539,asmbl_44540,asmbl_44542 scaffold_5 - retained_intron 13313903-13313990 asmbl_44541 // Exon Skipping and Retention # skipped_exon 13660264-13661299 (orient:-) max_ev_support = 2 # retained_exon 13660978-13661026 (orient:-) max_ev_support = 2 scaffold_5 - retained_exons 13660978-13661026 asmbl_44546,asmbl_44550 scaffold_5 - intron_skips_exon 13660264-13661299 asmbl_44545 // Retained and Spliced Intron # retained_intron 13664802-13665247 (orient:-) max_ev_support = 1 # spliced_intron 13664802-13665247 (orient:-) max_ev_support = 3 scaffold_5 - intron 13664802-13665247 asmbl_44545,asmbl_44546 scaffold_5 - retained_intron 13664802-13665247 asmbl_44550 // Exon Skipping and Retention # skipped_exon 13806575-13808028 (orient:-) max_ev_support = 1 # retained_exon 13807787-13807804 (orient:-) max_ev_support = 2 scaffold_5 - retained_exons 13807787-13807804 asmbl_44561,asmbl_44565 scaffold_5 - intron_skips_exon 13806575-13808028 asmbl_44564,asmbl_44566 // Exon Skipping and Retention # skipped_exon 13801958-13803444 (orient:-) max_ev_support = 2 # retained_exon 13802962-13803018 (orient:-) max_ev_support = 1 scaffold_5 - retained_exons 13802962-13803018 asmbl_44565,asmbl_44566 scaffold_5 - intron_skips_exon 13801958-13803444 asmbl_44561,asmbl_44564 // Retained and Spliced Intron # retained_intron 13825214-13825331 (orient:-) max_ev_support = 1 # spliced_intron 13825214-13825331 (orient:-) max_ev_support = 3 scaffold_5 - intron 13825214-13825331 asmbl_44569 scaffold_5 - retained_intron 13825214-13825331 asmbl_44570 // Retained and Spliced Intron # retained_intron 14124559-14124669 (orient:-) max_ev_support = 1 # spliced_intron 14124559-14124669 (orient:-) max_ev_support = 1 scaffold_5 - intron 14124559-14124669 asmbl_44589 scaffold_5 - retained_intron 14124559-14124669 asmbl_44590 // Retained and Spliced Intron # retained_intron 14124759-14124862 (orient:-) max_ev_support = 1 # spliced_intron 14124759-14124862 (orient:-) max_ev_support = 1 scaffold_5 - intron 14124759-14124862 asmbl_44589 scaffold_5 - retained_intron 14124759-14124862 asmbl_44590 // Retained and Spliced Intron # retained_intron 14125028-14125150 (orient:-) max_ev_support = 1 # spliced_intron 14125028-14125150 (orient:-) max_ev_support = 1 scaffold_5 - intron 14125028-14125150 asmbl_44589 scaffold_5 - retained_intron 14125028-14125150 asmbl_44590 // Retained and Spliced Intron # retained_intron 14126415-14126522 (orient:-) max_ev_support = 1 # spliced_intron 14126415-14126522 (orient:-) max_ev_support = 1 scaffold_5 - intron 14126415-14126522 asmbl_44589 scaffold_5 - retained_intron 14126415-14126522 asmbl_44591 // Retained and Spliced Intron # retained_intron 14568812-14568989 (orient:-) max_ev_support = 2 # spliced_intron 14568812-14568989 (orient:-) max_ev_support = 2 scaffold_5 - intron 14568812-14568989 asmbl_44599,asmbl_44601 scaffold_5 - retained_intron 14568812-14568989 asmbl_44600 // Retained and Spliced Intron # retained_intron 14569065-14569227 (orient:-) max_ev_support = 2 # spliced_intron 14569065-14569227 (orient:-) max_ev_support = 1 scaffold_5 - intron 14569065-14569227 asmbl_44601 scaffold_5 - retained_intron 14569065-14569227 asmbl_44600 // Retained and Spliced Intron # retained_intron 14569065-14569231 (orient:-) max_ev_support = 2 # spliced_intron 14569065-14569231 (orient:-) max_ev_support = 2 scaffold_5 - intron 14569065-14569231 asmbl_44599 scaffold_5 - retained_intron 14569065-14569231 asmbl_44600 // Retained and Spliced Intron # retained_intron 14569299-14569509 (orient:-) max_ev_support = 1 # spliced_intron 14569299-14569509 (orient:-) max_ev_support = 2 scaffold_5 - intron 14569299-14569509 asmbl_44599,asmbl_44601 scaffold_5 - retained_intron 14569299-14569509 asmbl_44600 // Retained and Spliced Intron # retained_intron 14601535-14601964 (orient:-) max_ev_support = 3 # spliced_intron 14601535-14601964 (orient:-) max_ev_support = 2 scaffold_5 - intron 14601535-14601964 asmbl_44605 scaffold_5 - retained_intron 14601535-14601964 asmbl_44604 // Retained and Spliced Intron # retained_intron 14731114-14731222 (orient:-) max_ev_support = 2 # spliced_intron 14731114-14731222 (orient:-) max_ev_support = 2 scaffold_5 - intron 14731114-14731222 asmbl_44614,asmbl_44617 scaffold_5 - retained_intron 14731114-14731222 asmbl_44615 // Retained and Spliced Intron # retained_intron 14732294-14732395 (orient:-) max_ev_support = 2 # spliced_intron 14732294-14732395 (orient:-) max_ev_support = 2 scaffold_5 - intron 14732294-14732395 asmbl_44614,asmbl_44617 scaffold_5 - retained_intron 14732294-14732395 asmbl_44616 // Retained and Spliced Intron # retained_intron 14732517-14732623 (orient:-) max_ev_support = 2 # spliced_intron 14732517-14732623 (orient:-) max_ev_support = 2 scaffold_5 - intron 14732517-14732623 asmbl_44614,asmbl_44617 scaffold_5 - retained_intron 14732517-14732623 asmbl_44616 // Retained and Spliced Intron # retained_intron 14732107-14732244 (orient:-) max_ev_support = 1 # spliced_intron 14732107-14732244 (orient:-) max_ev_support = 2 scaffold_5 - intron 14732107-14732244 asmbl_44614 scaffold_5 - retained_intron 14732107-14732244 asmbl_44617 // Retained and Spliced Intron # retained_intron 14763416-14763651 (orient:-) max_ev_support = 3 # spliced_intron 14763416-14763651 (orient:-) max_ev_support = 1 scaffold_5 - intron 14763416-14763651 asmbl_44620 scaffold_5 - retained_intron 14763416-14763651 asmbl_44619 // Retained and Spliced Intron # retained_intron 15031404-15031492 (orient:-) max_ev_support = 1 # spliced_intron 15031404-15031492 (orient:-) max_ev_support = 2 scaffold_5 - intron 15031404-15031492 asmbl_44630 scaffold_5 - retained_intron 15031404-15031492 asmbl_44631 // Retained and Spliced Intron # retained_intron 15043048-15043289 (orient:-) max_ev_support = 2 # spliced_intron 15043048-15043289 (orient:-) max_ev_support = 2 scaffold_5 - intron 15043048-15043289 asmbl_44633 scaffold_5 - retained_intron 15043048-15043289 asmbl_44632,asmbl_44637 // Exon Skipping and Retention # skipped_exon 15044032-15044293 (orient:-) max_ev_support = 1 # retained_exon 15044119-15044202 (orient:-) max_ev_support = 2 scaffold_5 - retained_exons 15044119-15044202 asmbl_44632,asmbl_44634,asmbl_44639 scaffold_5 - intron_skips_exon 15044032-15044293 asmbl_44633 // Exon Skipping and Retention # skipped_exon 15044005-15044293 (orient:-) max_ev_support = 2 # retained_exon 15044119-15044202 (orient:-) max_ev_support = 2 scaffold_5 - retained_exons 15044119-15044202 asmbl_44632,asmbl_44634,asmbl_44639 scaffold_5 - intron_skips_exon 15044005-15044293 asmbl_44636 // Retained and Spliced Intron # retained_intron 15044005-15044118 (orient:-) max_ev_support = 2 # spliced_intron 15044005-15044118 (orient:-) max_ev_support = 2 scaffold_5 - intron 15044005-15044118 asmbl_44634 scaffold_5 - retained_intron 15044005-15044118 asmbl_44635 // Retained and Spliced Intron # retained_intron 15044032-15044118 (orient:-) max_ev_support = 2 # spliced_intron 15044032-15044118 (orient:-) max_ev_support = 1 scaffold_5 - intron 15044032-15044118 asmbl_44632,asmbl_44638,asmbl_44639 scaffold_5 - retained_intron 15044032-15044118 asmbl_44635 // Retained and Spliced Intron # retained_intron 15044032-15044157 (orient:-) max_ev_support = 2 # spliced_intron 15044032-15044157 (orient:-) max_ev_support = 1 scaffold_5 - intron 15044032-15044157 asmbl_44637 scaffold_5 - retained_intron 15044032-15044157 asmbl_44635 // Retained and Spliced Intron # retained_intron 15041706-15041804 (orient:-) max_ev_support = 2 # spliced_intron 15041706-15041804 (orient:-) max_ev_support = 2 scaffold_5 - intron 15041706-15041804 asmbl_44638,asmbl_44639,asmbl_44640 scaffold_5 - retained_intron 15041706-15041804 asmbl_44641 // Retained and Spliced Intron # retained_intron 15285942-15286100 (orient:-) max_ev_support = 3 # spliced_intron 15285942-15286100 (orient:-) max_ev_support = 2 scaffold_5 - intron 15285942-15286100 asmbl_44658 scaffold_5 - retained_intron 15285942-15286100 asmbl_44657 // Exon Skipping and Retention # skipped_exon 15416648-15419286 (orient:-) max_ev_support = 2 # retained_exon 15418254-15418370 (orient:-) max_ev_support = 2 scaffold_5 - retained_exons 15418254-15418370 asmbl_44664 scaffold_5 - intron_skips_exon 15416648-15419286 asmbl_44665 // Retained and Spliced Intron # retained_intron 15462792-15463060 (orient:-) max_ev_support = 2 # spliced_intron 15462792-15463060 (orient:-) max_ev_support = 2 scaffold_5 - intron 15462792-15463060 asmbl_44675,asmbl_44677,asmbl_44678 scaffold_5 - retained_intron 15462792-15463060 asmbl_44676 // Retained and Spliced Intron # retained_intron 15463089-15463201 (orient:-) max_ev_support = 1 # spliced_intron 15463089-15463201 (orient:-) max_ev_support = 2 scaffold_5 - intron 15463089-15463201 asmbl_44675,asmbl_44678 scaffold_5 - retained_intron 15463089-15463201 asmbl_44677 // Retained and Spliced Intron # retained_intron 15462675-15462768 (orient:-) max_ev_support = 1 # spliced_intron 15462675-15462768 (orient:-) max_ev_support = 2 scaffold_5 - intron 15462675-15462768 asmbl_44675,asmbl_44677 scaffold_5 - retained_intron 15462675-15462768 asmbl_44678 // Exon Skipping and Retention # skipped_exon 15506286-15508000 (orient:-) max_ev_support = 3 # retained_exon 15506385-15507043 (orient:-) max_ev_support = 3 scaffold_5 - retained_exons 15506385-15506630,15506751-15507043 asmbl_44679,asmbl_44681 scaffold_5 - intron_skips_exon 15506286-15508000 asmbl_44680 // Retained and Spliced Intron # retained_intron 15521839-15522081 (orient:-) max_ev_support = 2 # spliced_intron 15521839-15522081 (orient:-) max_ev_support = 1 scaffold_5 - intron 15521839-15522081 asmbl_44683,asmbl_44687 scaffold_5 - retained_intron 15521839-15522081 asmbl_44684 // Retained and Spliced Intron # retained_intron 15513154-15513296 (orient:-) max_ev_support = 1 # spliced_intron 15513154-15513296 (orient:-) max_ev_support = 2 scaffold_5 - intron 15513154-15513296 asmbl_44683,asmbl_44684 scaffold_5 - retained_intron 15513154-15513296 asmbl_44686 // Retained and Spliced Intron # retained_intron 15528913-15529261 (orient:-) max_ev_support = 3 # spliced_intron 15528913-15529261 (orient:-) max_ev_support = 1 scaffold_5 - intron 15528913-15529261 asmbl_44693 scaffold_5 - retained_intron 15528913-15529261 asmbl_44692 // Retained and Spliced Intron # retained_intron 15539705-15539796 (orient:-) max_ev_support = 1 # spliced_intron 15539705-15539796 (orient:-) max_ev_support = 1 scaffold_5 - intron 15539705-15539796 asmbl_44694 scaffold_5 - retained_intron 15539705-15539796 asmbl_44695 // Exon Skipping and Retention # skipped_exon 15547083-15548192 (orient:-) max_ev_support = 2 # retained_exon 15547270-15547539 (orient:-) max_ev_support = 1 scaffold_5 - retained_exons 15547270-15547302,15547466-15547539 asmbl_44699 scaffold_5 - intron_skips_exon 15547083-15548192 asmbl_44696,asmbl_44698 // Retained and Spliced Intron # retained_intron 15560627-15561046 (orient:-) max_ev_support = 2 # spliced_intron 15560627-15561046 (orient:-) max_ev_support = 1 scaffold_5 - intron 15560627-15561046 asmbl_44704 scaffold_5 - retained_intron 15560627-15561046 asmbl_44703,asmbl_44705 // Exon Skipping and Retention # skipped_exon 15627804-15629419 (orient:-) max_ev_support = 1 # retained_exon 15628455-15628481 (orient:-) max_ev_support = 1 scaffold_5 - retained_exons 15628455-15628481 asmbl_44710 scaffold_5 - intron_skips_exon 15627804-15629419 asmbl_44711 // Retained and Spliced Intron # retained_intron 16018359-16018649 (orient:-) max_ev_support = 3 # spliced_intron 16018359-16018649 (orient:-) max_ev_support = 2 scaffold_5 - intron 16018359-16018649 asmbl_44740 scaffold_5 - retained_intron 16018359-16018649 asmbl_44738 // Exon Skipping and Retention # skipped_exon 16018055-16018649 (orient:-) max_ev_support = 1 # retained_exon 16018236-16018358 (orient:-) max_ev_support = 2 scaffold_5 - retained_exons 16018236-16018358 asmbl_44740 scaffold_5 - intron_skips_exon 16018055-16018649 asmbl_44741 // Exon Skipping and Retention # skipped_exon 16202540-16203093 (orient:-) max_ev_support = 1 # retained_exon 16202679-16202690 (orient:-) max_ev_support = 1 scaffold_5 - retained_exons 16202679-16202690 asmbl_44747 scaffold_5 - intron_skips_exon 16202540-16203093 asmbl_44748 // Exon Skipping and Retention # skipped_exon 16518924-16519444 (orient:-) max_ev_support = 2 # retained_exon 16519193-16519220 (orient:-) max_ev_support = 2 scaffold_5 - retained_exons 16519193-16519220 asmbl_44749,asmbl_44752 scaffold_5 - intron_skips_exon 16518924-16519444 asmbl_44750 // Retained and Spliced Intron # retained_intron 16519221-16519444 (orient:-) max_ev_support = 2 # spliced_intron 16519221-16519444 (orient:-) max_ev_support = 2 scaffold_5 - intron 16519221-16519444 asmbl_44749,asmbl_44752 scaffold_5 - retained_intron 16519221-16519444 asmbl_44751 // Retained and Spliced Intron # retained_intron 16519694-16519798 (orient:-) max_ev_support = 2 # spliced_intron 16519694-16519798 (orient:-) max_ev_support = 2 scaffold_5 - intron 16519694-16519798 asmbl_44749,asmbl_44750,asmbl_44752 scaffold_5 - retained_intron 16519694-16519798 asmbl_44751 // Retained and Spliced Intron # retained_intron 16583212-16583590 (orient:-) max_ev_support = 1 # spliced_intron 16583212-16583590 (orient:-) max_ev_support = 1 scaffold_5 - intron 16583212-16583590 asmbl_44760 scaffold_5 - retained_intron 16583212-16583590 asmbl_44757,asmbl_44758,asmbl_44759,asmbl_44761 // Exon Skipping and Retention # skipped_exon 16843967-16846235 (orient:-) max_ev_support = 2 # retained_exon 16844385-16844647 (orient:-) max_ev_support = 2 scaffold_5 - retained_exons 16844385-16844647 asmbl_44781 scaffold_5 - intron_skips_exon 16843967-16846235 asmbl_44783 // Retained and Spliced Intron # retained_intron 16937471-16937586 (orient:-) max_ev_support = 1 # spliced_intron 16937471-16937586 (orient:-) max_ev_support = 2 scaffold_5 - intron 16937471-16937586 asmbl_44785,asmbl_44786,asmbl_44788 scaffold_5 - retained_intron 16937471-16937586 asmbl_44787 // Retained and Spliced Intron # retained_intron 17211657-17211735 (orient:-) max_ev_support = 1 # spliced_intron 17211657-17211735 (orient:-) max_ev_support = 2 scaffold_5 - intron 17211657-17211735 asmbl_44795,asmbl_44796,asmbl_44799,asmbl_44800 scaffold_5 - retained_intron 17211657-17211735 asmbl_44797 // Retained and Spliced Intron # retained_intron 17210337-17210461 (orient:-) max_ev_support = 1 # spliced_intron 17210337-17210461 (orient:-) max_ev_support = 2 scaffold_5 - intron 17210337-17210461 asmbl_44795,asmbl_44796,asmbl_44797,asmbl_44799 scaffold_5 - retained_intron 17210337-17210461 asmbl_44798,asmbl_44800 // Retained and Spliced Intron # retained_intron 17210617-17210897 (orient:-) max_ev_support = 1 # spliced_intron 17210617-17210897 (orient:-) max_ev_support = 2 scaffold_5 - intron 17210617-17210897 asmbl_44795,asmbl_44796,asmbl_44797,asmbl_44798 scaffold_5 - retained_intron 17210617-17210897 asmbl_44799,asmbl_44800 // Retained and Spliced Intron # retained_intron 17368979-17369287 (orient:-) max_ev_support = 3 # spliced_intron 17368979-17369287 (orient:-) max_ev_support = 2 scaffold_5 - intron 17368979-17369287 asmbl_44803 scaffold_5 - retained_intron 17368979-17369287 asmbl_44802 // Exon Skipping and Retention # skipped_exon 18391820-18392095 (orient:-) max_ev_support = 2 # retained_exon 18391919-18391994 (orient:-) max_ev_support = 1 scaffold_5 - retained_exons 18391919-18391994 asmbl_44836 scaffold_5 - intron_skips_exon 18391820-18392095 asmbl_44837 // Retained and Spliced Intron # retained_intron 18514607-18514706 (orient:-) max_ev_support = 2 # spliced_intron 18514607-18514706 (orient:-) max_ev_support = 2 scaffold_5 - intron 18514607-18514706 asmbl_44844 scaffold_5 - retained_intron 18514607-18514706 asmbl_44843 // Retained and Spliced Intron # retained_intron 18696880-18697441 (orient:-) max_ev_support = 1 # spliced_intron 18696880-18697441 (orient:-) max_ev_support = 1 scaffold_5 - intron 18696880-18697441 asmbl_44856 scaffold_5 - retained_intron 18696880-18697441 asmbl_44854,asmbl_44857 // Retained and Spliced Intron # retained_intron 18713113-18713290 (orient:-) max_ev_support = 3 # spliced_intron 18713113-18713290 (orient:-) max_ev_support = 3 scaffold_5 - intron 18713113-18713290 asmbl_44865 scaffold_5 - retained_intron 18713113-18713290 asmbl_44864,asmbl_44866 // Retained and Spliced Intron # retained_intron 18758085-18758276 (orient:-) max_ev_support = 2 # spliced_intron 18758085-18758276 (orient:-) max_ev_support = 2 scaffold_5 - intron 18758085-18758276 asmbl_44874,asmbl_44876 scaffold_5 - retained_intron 18758085-18758276 asmbl_44873,asmbl_44875 // Retained and Spliced Intron # retained_intron 18758399-18758711 (orient:-) max_ev_support = 2 # spliced_intron 18758399-18758711 (orient:-) max_ev_support = 2 scaffold_5 - intron 18758399-18758711 asmbl_44874 scaffold_5 - retained_intron 18758399-18758711 asmbl_44873 // Retained and Spliced Intron # retained_intron 18758460-18758711 (orient:-) max_ev_support = 2 # spliced_intron 18758460-18758711 (orient:-) max_ev_support = 1 scaffold_5 - intron 18758460-18758711 asmbl_44875,asmbl_44876 scaffold_5 - retained_intron 18758460-18758711 asmbl_44873 // Retained and Spliced Intron # retained_intron 19029108-19029499 (orient:-) max_ev_support = 2 # spliced_intron 19029108-19029499 (orient:-) max_ev_support = 1 scaffold_5 - intron 19029108-19029499 asmbl_44889,asmbl_44892 scaffold_5 - retained_intron 19029108-19029499 asmbl_44887 // Retained and Spliced Intron # retained_intron 19031567-19031663 (orient:-) max_ev_support = 2 # spliced_intron 19031567-19031663 (orient:-) max_ev_support = 1 scaffold_5 - intron 19031567-19031663 asmbl_44886 scaffold_5 - retained_intron 19031567-19031663 asmbl_44888 // Retained and Spliced Intron # retained_intron 19031567-19031895 (orient:-) max_ev_support = 2 # spliced_intron 19031567-19031895 (orient:-) max_ev_support = 2 scaffold_5 - intron 19031567-19031895 asmbl_44884,asmbl_44885,asmbl_44890,asmbl_44892 scaffold_5 - retained_intron 19031567-19031895 asmbl_44888 // Exon Skipping and Retention # skipped_exon 19029108-19031503 (orient:-) max_ev_support = 2 # retained_exon 19029500-19029511 (orient:-) max_ev_support = 1 scaffold_5 - retained_exons 19029500-19029511 asmbl_44892 scaffold_5 - intron_skips_exon 19029108-19031503 asmbl_44884,asmbl_44886 // Exon Skipping and Retention # skipped_exon 19029102-19031503 (orient:-) max_ev_support = 1 # retained_exon 19029500-19029511 (orient:-) max_ev_support = 1 scaffold_5 - retained_exons 19029500-19029511 asmbl_44892 scaffold_5 - intron_skips_exon 19029102-19031503 asmbl_44885 // Retained and Spliced Intron # retained_intron 19145546-19145630 (orient:-) max_ev_support = 1 # spliced_intron 19145546-19145630 (orient:-) max_ev_support = 2 scaffold_5 - intron 19145546-19145630 asmbl_44895,asmbl_44897 scaffold_5 - retained_intron 19145546-19145630 asmbl_44896 // Retained and Spliced Intron # retained_intron 19351052-19351309 (orient:-) max_ev_support = 1 # spliced_intron 19351052-19351309 (orient:-) max_ev_support = 2 scaffold_5 - intron 19351052-19351309 asmbl_44899,asmbl_44900 scaffold_5 - retained_intron 19351052-19351309 asmbl_44901 // Retained and Spliced Intron # retained_intron 19351640-19352041 (orient:-) max_ev_support = 1 # spliced_intron 19351640-19352041 (orient:-) max_ev_support = 2 scaffold_5 - intron 19351640-19352041 asmbl_44899,asmbl_44900 scaffold_5 - retained_intron 19351640-19352041 asmbl_44901 // Retained and Spliced Intron # retained_intron 19371162-19371247 (orient:-) max_ev_support = 3 # spliced_intron 19371162-19371247 (orient:-) max_ev_support = 3 scaffold_5 - intron 19371162-19371247 asmbl_44905,asmbl_44908 scaffold_5 - retained_intron 19371162-19371247 asmbl_44906 // Retained and Spliced Intron # retained_intron 19374068-19374221 (orient:-) max_ev_support = 2 # spliced_intron 19374068-19374221 (orient:-) max_ev_support = 3 scaffold_5 - intron 19374068-19374221 asmbl_44905,asmbl_44909 scaffold_5 - retained_intron 19374068-19374221 asmbl_44907 // Retained and Spliced Intron # retained_intron 19444958-19445069 (orient:-) max_ev_support = 3 # spliced_intron 19444958-19445069 (orient:-) max_ev_support = 3 scaffold_5 - intron 19444958-19445069 asmbl_44913 scaffold_5 - retained_intron 19444958-19445069 asmbl_44914 // Retained and Spliced Intron # retained_intron 19463375-19463478 (orient:-) max_ev_support = 1 # spliced_intron 19463375-19463478 (orient:-) max_ev_support = 1 scaffold_5 - intron 19463375-19463478 asmbl_44919 scaffold_5 - retained_intron 19463375-19463478 asmbl_44918 // Retained and Spliced Intron # retained_intron 68119-68377 (orient:+) max_ev_support = 5 # spliced_intron 68119-68377 (orient:+) max_ev_support = 1 scaffold_5 + intron 68119-68377 asmbl_45067 scaffold_5 + retained_intron 68119-68377 asmbl_45066 // Exon Skipping and Retention # skipped_exon 134623-136009 (orient:+) max_ev_support = 1 # retained_exon 134802-134958 (orient:+) max_ev_support = 1 scaffold_5 + retained_exons 134802-134958 asmbl_45071 scaffold_5 + intron_skips_exon 134623-136009 asmbl_45072 // Exon Skipping and Retention # skipped_exon 134959-136525 (orient:+) max_ev_support = 1 # retained_exon 136010-136166 (orient:+) max_ev_support = 1 scaffold_5 + retained_exons 136010-136166 asmbl_45072 scaffold_5 + intron_skips_exon 134959-136525 asmbl_45071 // Exon Skipping and Retention # skipped_exon 186256-187984 (orient:+) max_ev_support = 1 # retained_exon 187064-187093 (orient:+) max_ev_support = 1 scaffold_5 + retained_exons 187064-187093 asmbl_45086,asmbl_45088,asmbl_45089,asmbl_45090 scaffold_5 + intron_skips_exon 186256-187984 asmbl_45087 // Retained and Spliced Intron # retained_intron 188214-188267 (orient:+) max_ev_support = 1 # spliced_intron 188214-188267 (orient:+) max_ev_support = 1 scaffold_5 + intron 188214-188267 asmbl_45089,asmbl_45090 scaffold_5 + retained_intron 188214-188267 asmbl_45086,asmbl_45087,asmbl_45088 // Retained and Spliced Intron # retained_intron 188824-188862 (orient:+) max_ev_support = 3 # spliced_intron 188824-188862 (orient:+) max_ev_support = 1 scaffold_5 + intron 188824-188862 asmbl_45090 scaffold_5 + retained_intron 188824-188862 asmbl_45086,asmbl_45087,asmbl_45088,asmbl_45089 // Retained and Spliced Intron # retained_intron 189929-189960 (orient:+) max_ev_support = 6 # spliced_intron 189929-189960 (orient:+) max_ev_support = 1 scaffold_5 + intron 189929-189960 asmbl_45088,asmbl_45089,asmbl_45090 scaffold_5 + retained_intron 189929-189960 asmbl_45086 // Retained and Spliced Intron # retained_intron 189945-189976 (orient:+) max_ev_support = 6 # spliced_intron 189945-189976 (orient:+) max_ev_support = 1 scaffold_5 + intron 189945-189976 asmbl_45087 scaffold_5 + retained_intron 189945-189976 asmbl_45086 // Retained and Spliced Intron # retained_intron 188746-188784 (orient:+) max_ev_support = 3 # spliced_intron 188746-188784 (orient:+) max_ev_support = 1 scaffold_5 + intron 188746-188784 asmbl_45086 scaffold_5 + retained_intron 188746-188784 asmbl_45087,asmbl_45088,asmbl_45089,asmbl_45090 // Retained and Spliced Intron # retained_intron 233770-233796 (orient:+) max_ev_support = 1 # spliced_intron 233770-233796 (orient:+) max_ev_support = 1 scaffold_5 + intron 233770-233796 asmbl_45093 scaffold_5 + retained_intron 233770-233796 asmbl_45092 // Exon Skipping and Retention # skipped_exon 823617-825278 (orient:+) max_ev_support = 1 # retained_exon 824518-824592 (orient:+) max_ev_support = 1 scaffold_5 + retained_exons 824518-824592 asmbl_45103 scaffold_5 + intron_skips_exon 823617-825278 asmbl_45102 // Exon Skipping and Retention # skipped_exon 992901-994296 (orient:+) max_ev_support = 1 # retained_exon 993797-993872 (orient:+) max_ev_support = 2 scaffold_5 + retained_exons 993797-993872 asmbl_45107,asmbl_45108 scaffold_5 + intron_skips_exon 992901-994296 asmbl_45109 // Exon Skipping and Retention # skipped_exon 992426-993796 (orient:+) max_ev_support = 2 # retained_exon 992825-992900 (orient:+) max_ev_support = 1 scaffold_5 + retained_exons 992825-992900 asmbl_45109 scaffold_5 + intron_skips_exon 992426-993796 asmbl_45107,asmbl_45108 // Retained and Spliced Intron # retained_intron 1162909-1162938 (orient:+) max_ev_support = 1 # spliced_intron 1162909-1162938 (orient:+) max_ev_support = 1 scaffold_5 + intron 1162909-1162938 asmbl_45115 scaffold_5 + retained_intron 1162909-1162938 asmbl_45116 // Retained and Spliced Intron # retained_intron 2400901-2400920 (orient:+) max_ev_support = 2 # spliced_intron 2400901-2400920 (orient:+) max_ev_support = 1 scaffold_5 + intron 2400901-2400920 asmbl_45166 scaffold_5 + retained_intron 2400901-2400920 asmbl_45165 // Retained and Spliced Intron # retained_intron 2536271-2536536 (orient:+) max_ev_support = 2 # spliced_intron 2536271-2536536 (orient:+) max_ev_support = 1 scaffold_5 + intron 2536271-2536536 asmbl_45174,asmbl_45175 scaffold_5 + retained_intron 2536271-2536536 asmbl_45172 // Retained and Spliced Intron # retained_intron 2536271-2536552 (orient:+) max_ev_support = 2 # spliced_intron 2536271-2536552 (orient:+) max_ev_support = 2 scaffold_5 + intron 2536271-2536552 asmbl_45171,asmbl_45173 scaffold_5 + retained_intron 2536271-2536552 asmbl_45172 // Exon Skipping and Retention # skipped_exon 2608393-2611347 (orient:+) max_ev_support = 1 # retained_exon 2608955-2608996 (orient:+) max_ev_support = 2 scaffold_5 + retained_exons 2608955-2608996 asmbl_45188 scaffold_5 + intron_skips_exon 2608393-2611347 asmbl_45190 // Retained and Spliced Intron # retained_intron 3630484-3630505 (orient:+) max_ev_support = 1 # spliced_intron 3630484-3630505 (orient:+) max_ev_support = 1 scaffold_5 + intron 3630484-3630505 asmbl_45229,asmbl_45230 scaffold_5 + retained_intron 3630484-3630505 asmbl_45228 // Exon Skipping and Retention # skipped_exon 3772202-3774132 (orient:+) max_ev_support = 1 # retained_exon 3772855-3773188 (orient:+) max_ev_support = 2 scaffold_5 + retained_exons 3772855-3773188 asmbl_45236 scaffold_5 + intron_skips_exon 3772202-3774132 asmbl_45238 // Retained and Spliced Intron # retained_intron 3935675-3935871 (orient:+) max_ev_support = 3 # spliced_intron 3935675-3935871 (orient:+) max_ev_support = 1 scaffold_5 + intron 3935675-3935871 asmbl_45260 scaffold_5 + retained_intron 3935675-3935871 asmbl_45259 // Retained and Spliced Intron # retained_intron 3935999-3936105 (orient:+) max_ev_support = 3 # spliced_intron 3935999-3936105 (orient:+) max_ev_support = 1 scaffold_5 + intron 3935999-3936105 asmbl_45260 scaffold_5 + retained_intron 3935999-3936105 asmbl_45259 // Retained and Spliced Intron # retained_intron 4696342-4696551 (orient:+) max_ev_support = 1 # spliced_intron 4696342-4696551 (orient:+) max_ev_support = 1 scaffold_5 + intron 4696342-4696551 asmbl_45286 scaffold_5 + retained_intron 4696342-4696551 asmbl_45287 // Retained and Spliced Intron # retained_intron 4696342-4696593 (orient:+) max_ev_support = 1 # spliced_intron 4696342-4696593 (orient:+) max_ev_support = 1 scaffold_5 + intron 4696342-4696593 asmbl_45285 scaffold_5 + retained_intron 4696342-4696593 asmbl_45287 // Retained and Spliced Intron # retained_intron 4696384-4696509 (orient:+) max_ev_support = 1 # spliced_intron 4696384-4696509 (orient:+) max_ev_support = 1 scaffold_5 + intron 4696384-4696509 asmbl_45290 scaffold_5 + retained_intron 4696384-4696509 asmbl_45287 // Retained and Spliced Intron # retained_intron 4696426-4696467 (orient:+) max_ev_support = 1 # spliced_intron 4696426-4696467 (orient:+) max_ev_support = 1 scaffold_5 + intron 4696426-4696467 asmbl_45289 scaffold_5 + retained_intron 4696426-4696467 asmbl_45287 // Retained and Spliced Intron # retained_intron 4754616-4754915 (orient:+) max_ev_support = 1 # spliced_intron 4754616-4754915 (orient:+) max_ev_support = 2 scaffold_5 + intron 4754616-4754915 asmbl_45294 scaffold_5 + retained_intron 4754616-4754915 asmbl_45295 // Retained and Spliced Intron # retained_intron 4865673-4866834 (orient:+) max_ev_support = 3 # spliced_intron 4865673-4866834 (orient:+) max_ev_support = 2 scaffold_5 + intron 4865673-4866834 asmbl_45310 scaffold_5 + retained_intron 4865673-4866834 asmbl_45308,asmbl_45309 // Retained and Spliced Intron # retained_intron 4866436-4866834 (orient:+) max_ev_support = 2 # spliced_intron 4866436-4866834 (orient:+) max_ev_support = 2 scaffold_5 + intron 4866436-4866834 asmbl_45307 scaffold_5 + retained_intron 4866436-4866834 asmbl_45308,asmbl_45309 // Retained and Spliced Intron # retained_intron 4866969-4867162 (orient:+) max_ev_support = 2 # spliced_intron 4866969-4867162 (orient:+) max_ev_support = 2 scaffold_5 + intron 4866969-4867162 asmbl_45307,asmbl_45308,asmbl_45310 scaffold_5 + retained_intron 4866969-4867162 asmbl_45309 // Retained and Spliced Intron # retained_intron 4948779-4949120 (orient:+) max_ev_support = 1 # spliced_intron 4948779-4949120 (orient:+) max_ev_support = 3 scaffold_5 + intron 4948779-4949120 asmbl_45317 scaffold_5 + retained_intron 4948779-4949120 asmbl_45318,asmbl_45319 // Retained and Spliced Intron # retained_intron 4948983-4949120 (orient:+) max_ev_support = 1 # spliced_intron 4948983-4949120 (orient:+) max_ev_support = 1 scaffold_5 + intron 4948983-4949120 asmbl_45320 scaffold_5 + retained_intron 4948983-4949120 asmbl_45318,asmbl_45319 // Retained and Spliced Intron # retained_intron 4949952-4950472 (orient:+) max_ev_support = 3 # spliced_intron 4949952-4950472 (orient:+) max_ev_support = 3 scaffold_5 + intron 4949952-4950472 asmbl_45317,asmbl_45319,asmbl_45320 scaffold_5 + retained_intron 4949952-4950472 asmbl_45318 // Retained and Spliced Intron # retained_intron 5045141-5045218 (orient:+) max_ev_support = 1 # spliced_intron 5045141-5045218 (orient:+) max_ev_support = 1 scaffold_5 + intron 5045141-5045218 asmbl_45329 scaffold_5 + retained_intron 5045141-5045218 asmbl_45325,asmbl_45328 // Retained and Spliced Intron # retained_intron 5045141-5045424 (orient:+) max_ev_support = 1 # spliced_intron 5045141-5045424 (orient:+) max_ev_support = 2 scaffold_5 + intron 5045141-5045424 asmbl_45327 scaffold_5 + retained_intron 5045141-5045424 asmbl_45325,asmbl_45328 // Retained and Spliced Intron # retained_intron 5045141-5046460 (orient:+) max_ev_support = 2 # spliced_intron 5045141-5046460 (orient:+) max_ev_support = 2 scaffold_5 + intron 5045141-5046460 asmbl_45326,asmbl_45331 scaffold_5 + retained_intron 5045141-5046460 asmbl_45325,asmbl_45328 // Retained and Spliced Intron # retained_intron 5046593-5047832 (orient:+) max_ev_support = 5 # spliced_intron 5046593-5047832 (orient:+) max_ev_support = 2 scaffold_5 + intron 5046593-5047832 asmbl_45326,asmbl_45327,asmbl_45328,asmbl_45331 scaffold_5 + retained_intron 5046593-5047832 asmbl_45325 // Retained and Spliced Intron # retained_intron 5047311-5047832 (orient:+) max_ev_support = 5 # spliced_intron 5047311-5047832 (orient:+) max_ev_support = 2 scaffold_5 + intron 5047311-5047832 asmbl_45329 scaffold_5 + retained_intron 5047311-5047832 asmbl_45325 // Exon Skipping and Retention # skipped_exon 5051252-5053991 (orient:+) max_ev_support = 2 # retained_exon 5051789-5051848 (orient:+) max_ev_support = 2 scaffold_5 + retained_exons 5051789-5051848 asmbl_45332,asmbl_45334 scaffold_5 + intron_skips_exon 5051252-5053991 asmbl_45333,asmbl_45335 // Retained and Spliced Intron # retained_intron 5061484-5061828 (orient:+) max_ev_support = 3 # spliced_intron 5061484-5061828 (orient:+) max_ev_support = 2 scaffold_5 + intron 5061484-5061828 asmbl_45340,asmbl_45341,asmbl_45342 scaffold_5 + retained_intron 5061484-5061828 asmbl_45338,asmbl_45339 // Retained and Spliced Intron # retained_intron 5061929-5062040 (orient:+) max_ev_support = 3 # spliced_intron 5061929-5062040 (orient:+) max_ev_support = 2 scaffold_5 + intron 5061929-5062040 asmbl_45340,asmbl_45342 scaffold_5 + retained_intron 5061929-5062040 asmbl_45338,asmbl_45339,asmbl_45341 // Retained and Spliced Intron # retained_intron 5060700-5061166 (orient:+) max_ev_support = 2 # spliced_intron 5060700-5061166 (orient:+) max_ev_support = 2 scaffold_5 + intron 5060700-5061166 asmbl_45338,asmbl_45340 scaffold_5 + retained_intron 5060700-5061166 asmbl_45339,asmbl_45341,asmbl_45342 // Retained and Spliced Intron # retained_intron 5061259-5061405 (orient:+) max_ev_support = 2 # spliced_intron 5061259-5061405 (orient:+) max_ev_support = 3 scaffold_5 + intron 5061259-5061405 asmbl_45338,asmbl_45340,asmbl_45342 scaffold_5 + retained_intron 5061259-5061405 asmbl_45339,asmbl_45341 // Exon Skipping and Retention # skipped_exon 5608152-5608962 (orient:+) max_ev_support = 2 # retained_exon 5608356-5608889 (orient:+) max_ev_support = 1 scaffold_5 + retained_exons 5608356-5608889 asmbl_45352 scaffold_5 + intron_skips_exon 5608152-5608962 asmbl_45351 // Retained and Spliced Intron # retained_intron 5608890-5608962 (orient:+) max_ev_support = 1 # spliced_intron 5608890-5608962 (orient:+) max_ev_support = 1 scaffold_5 + intron 5608890-5608962 asmbl_45352,asmbl_45353 scaffold_5 + retained_intron 5608890-5608962 asmbl_45354 // Exon Skipping and Retention # skipped_exon 5737985-5739761 (orient:+) max_ev_support = 2 # retained_exon 5738079-5738649 (orient:+) max_ev_support = 2 scaffold_5 + retained_exons 5738079-5738214,5738535-5738649 asmbl_45361 scaffold_5 + intron_skips_exon 5737985-5739761 asmbl_45362 // Exon Skipping and Retention # skipped_exon 5738210-5739761 (orient:+) max_ev_support = 1 # retained_exon 5738535-5738649 (orient:+) max_ev_support = 2 scaffold_5 + retained_exons 5738535-5738649 asmbl_45361,asmbl_45363 scaffold_5 + intron_skips_exon 5738210-5739761 asmbl_45364,asmbl_45366 // Retained and Spliced Intron # retained_intron 5738215-5738534 (orient:+) max_ev_support = 2 # spliced_intron 5738215-5738534 (orient:+) max_ev_support = 2 scaffold_5 + intron 5738215-5738534 asmbl_45361,asmbl_45363 scaffold_5 + retained_intron 5738215-5738534 asmbl_45365,asmbl_45367 // Retained and Spliced Intron # retained_intron 5754426-5756080 (orient:+) max_ev_support = 1 # spliced_intron 5754426-5756080 (orient:+) max_ev_support = 2 scaffold_5 + intron 5754426-5756080 asmbl_45370 scaffold_5 + retained_intron 5754426-5756080 asmbl_45371,asmbl_45373 // Retained and Spliced Intron # retained_intron 5755722-5756080 (orient:+) max_ev_support = 1 # spliced_intron 5755722-5756080 (orient:+) max_ev_support = 1 scaffold_5 + intron 5755722-5756080 asmbl_45372,asmbl_45374 scaffold_5 + retained_intron 5755722-5756080 asmbl_45371,asmbl_45373 // Retained and Spliced Intron # retained_intron 5972142-5972548 (orient:+) max_ev_support = 1 # spliced_intron 5972142-5972548 (orient:+) max_ev_support = 1 scaffold_5 + intron 5972142-5972548 asmbl_45385 scaffold_5 + retained_intron 5972142-5972548 asmbl_45383 // Retained and Spliced Intron # retained_intron 5972401-5972548 (orient:+) max_ev_support = 1 # spliced_intron 5972401-5972548 (orient:+) max_ev_support = 1 scaffold_5 + intron 5972401-5972548 asmbl_45384 scaffold_5 + retained_intron 5972401-5972548 asmbl_45383 // Retained and Spliced Intron # retained_intron 6010030-6010122 (orient:+) max_ev_support = 1 # spliced_intron 6010030-6010122 (orient:+) max_ev_support = 3 scaffold_5 + intron 6010030-6010122 asmbl_45390 scaffold_5 + retained_intron 6010030-6010122 asmbl_45391 // Exon Skipping and Retention # skipped_exon 6064631-6065158 (orient:+) max_ev_support = 1 # retained_exon 6064795-6064853 (orient:+) max_ev_support = 2 scaffold_5 + retained_exons 6064795-6064853 asmbl_45397,asmbl_45398 scaffold_5 + intron_skips_exon 6064631-6065158 asmbl_45401 // Exon Skipping and Retention # skipped_exon 6064854-6065937 (orient:+) max_ev_support = 2 # retained_exon 6065159-6065217 (orient:+) max_ev_support = 2 scaffold_5 + retained_exons 6065159-6065217 asmbl_45398,asmbl_45401 scaffold_5 + intron_skips_exon 6064854-6065937 asmbl_45397 // Exon Skipping and Retention # skipped_exon 6289314-6290164 (orient:+) max_ev_support = 1 # retained_exon 6289561-6289649 (orient:+) max_ev_support = 2 scaffold_5 + retained_exons 6289561-6289649 asmbl_45418 scaffold_5 + intron_skips_exon 6289314-6290164 asmbl_45420 // Exon Skipping and Retention # skipped_exon 6289083-6289560 (orient:+) max_ev_support = 2 # retained_exon 6289221-6289313 (orient:+) max_ev_support = 1 scaffold_5 + retained_exons 6289221-6289313 asmbl_45420 scaffold_5 + intron_skips_exon 6289083-6289560 asmbl_45418,asmbl_45419 // Exon Skipping and Retention # skipped_exon 6716069-6718508 (orient:+) max_ev_support = 3 # retained_exon 6717952-6718042 (orient:+) max_ev_support = 2 scaffold_5 + retained_exons 6717952-6718042 asmbl_45445 scaffold_5 + intron_skips_exon 6716069-6718508 asmbl_45444 // Retained and Spliced Intron # retained_intron 6734217-6734431 (orient:+) max_ev_support = 2 # spliced_intron 6734217-6734431 (orient:+) max_ev_support = 2 scaffold_5 + intron 6734217-6734431 asmbl_45448 scaffold_5 + retained_intron 6734217-6734431 asmbl_45447,asmbl_45449 // Retained and Spliced Intron # retained_intron 6847775-6848001 (orient:+) max_ev_support = 1 # spliced_intron 6847775-6848001 (orient:+) max_ev_support = 2 scaffold_5 + intron 6847775-6848001 asmbl_45450 scaffold_5 + retained_intron 6847775-6848001 asmbl_45452 // Retained and Spliced Intron # retained_intron 6933179-6933389 (orient:+) max_ev_support = 1 # spliced_intron 6933179-6933389 (orient:+) max_ev_support = 2 scaffold_5 + intron 6933179-6933389 asmbl_45463 scaffold_5 + retained_intron 6933179-6933389 asmbl_45466 // Retained and Spliced Intron # retained_intron 6933262-6933389 (orient:+) max_ev_support = 1 # spliced_intron 6933262-6933389 (orient:+) max_ev_support = 1 scaffold_5 + intron 6933262-6933389 asmbl_45465 scaffold_5 + retained_intron 6933262-6933389 asmbl_45466 // Retained and Spliced Intron # retained_intron 7035672-7035721 (orient:+) max_ev_support = 3 # spliced_intron 7035672-7035721 (orient:+) max_ev_support = 1 scaffold_5 + intron 7035672-7035721 asmbl_45478 scaffold_5 + retained_intron 7035672-7035721 asmbl_45472,asmbl_45473,asmbl_45474,asmbl_45475,asmbl_45476,asmbl_45477 // Exon Skipping and Retention # skipped_exon 7029956-7031130 (orient:+) max_ev_support = 2 # retained_exon 7030345-7030432 (orient:+) max_ev_support = 1 scaffold_5 + retained_exons 7030345-7030432 asmbl_45473,asmbl_45474,asmbl_45475,asmbl_45477 scaffold_5 + intron_skips_exon 7029956-7031130 asmbl_45472,asmbl_45476,asmbl_45478 // Retained and Spliced Intron # retained_intron 7320374-7320425 (orient:+) max_ev_support = 1 # spliced_intron 7320374-7320425 (orient:+) max_ev_support = 1 scaffold_5 + intron 7320374-7320425 asmbl_45493 scaffold_5 + retained_intron 7320374-7320425 asmbl_45490,asmbl_45492 // Retained and Spliced Intron # retained_intron 7320452-7320503 (orient:+) max_ev_support = 1 # spliced_intron 7320452-7320503 (orient:+) max_ev_support = 1 scaffold_5 + intron 7320452-7320503 asmbl_45490,asmbl_45492 scaffold_5 + retained_intron 7320452-7320503 asmbl_45493 // Retained and Spliced Intron # retained_intron 7708243-7708325 (orient:+) max_ev_support = 2 # spliced_intron 7708243-7708325 (orient:+) max_ev_support = 2 scaffold_5 + intron 7708243-7708325 asmbl_45501 scaffold_5 + retained_intron 7708243-7708325 asmbl_45500,asmbl_45502,asmbl_45503 // Retained and Spliced Intron # retained_intron 7707898-7707967 (orient:+) max_ev_support = 1 # spliced_intron 7707898-7707967 (orient:+) max_ev_support = 2 scaffold_5 + intron 7707898-7707967 asmbl_45500,asmbl_45503 scaffold_5 + retained_intron 7707898-7707967 asmbl_45502 // Exon Skipping and Retention # skipped_exon 7708375-7708743 (orient:+) max_ev_support = 2 # retained_exon 7708535-7708630 (orient:+) max_ev_support = 1 scaffold_5 + retained_exons 7708535-7708630 asmbl_45503 scaffold_5 + intron_skips_exon 7708375-7708743 asmbl_45500,asmbl_45501,asmbl_45502 // Exon Skipping and Retention # skipped_exon 7740584-7741185 (orient:+) max_ev_support = 1 # retained_exon 7740676-7740966 (orient:+) max_ev_support = 2 scaffold_5 + retained_exons 7740676-7740747,7740866-7740966 asmbl_45505,asmbl_45507 scaffold_5 + intron_skips_exon 7740584-7741185 asmbl_45506 // Retained and Spliced Intron # retained_intron 7770850-7770942 (orient:+) max_ev_support = 1 # spliced_intron 7770850-7770942 (orient:+) max_ev_support = 1 scaffold_5 + intron 7770850-7770942 asmbl_45512 scaffold_5 + retained_intron 7770850-7770942 asmbl_45513 // Retained and Spliced Intron # retained_intron 8070415-8070604 (orient:+) max_ev_support = 3 # spliced_intron 8070415-8070604 (orient:+) max_ev_support = 2 scaffold_5 + intron 8070415-8070604 asmbl_45523 scaffold_5 + retained_intron 8070415-8070604 asmbl_45522,asmbl_45524 // Exon Skipping and Retention # skipped_exon 8132404-8133608 (orient:+) max_ev_support = 2 # retained_exon 8132682-8132807 (orient:+) max_ev_support = 2 scaffold_5 + retained_exons 8132682-8132807 asmbl_45529 scaffold_5 + intron_skips_exon 8132404-8133608 asmbl_45530 // Retained and Spliced Intron # retained_intron 8413453-8413714 (orient:+) max_ev_support = 3 # spliced_intron 8413453-8413714 (orient:+) max_ev_support = 2 scaffold_5 + intron 8413453-8413714 asmbl_45549 scaffold_5 + retained_intron 8413453-8413714 asmbl_45548 // Retained and Spliced Intron # retained_intron 8413453-8414764 (orient:+) max_ev_support = 3 # spliced_intron 8413453-8414764 (orient:+) max_ev_support = 1 scaffold_5 + intron 8413453-8414764 asmbl_45550,asmbl_45551 scaffold_5 + retained_intron 8413453-8414764 asmbl_45548 // Exon Skipping and Retention # skipped_exon 8565762-8567600 (orient:+) max_ev_support = 1 # retained_exon 8566223-8566305 (orient:+) max_ev_support = 2 scaffold_5 + retained_exons 8566223-8566305 asmbl_45554 scaffold_5 + intron_skips_exon 8565762-8567600 asmbl_45555 // Exon Skipping and Retention # skipped_exon 8670847-8673324 (orient:+) max_ev_support = 2 # retained_exon 8671499-8671543 (orient:+) max_ev_support = 2 scaffold_5 + retained_exons 8671499-8671543 asmbl_45562 scaffold_5 + intron_skips_exon 8670847-8673324 asmbl_45561 // Retained and Spliced Intron # retained_intron 8746681-8747979 (orient:+) max_ev_support = 3 # spliced_intron 8746681-8747979 (orient:+) max_ev_support = 3 scaffold_5 + intron 8746681-8747979 asmbl_45565,asmbl_45567 scaffold_5 + retained_intron 8746681-8747979 asmbl_45566 // Retained and Spliced Intron # retained_intron 8748542-8748659 (orient:+) max_ev_support = 3 # spliced_intron 8748542-8748659 (orient:+) max_ev_support = 3 scaffold_5 + intron 8748542-8748659 asmbl_45565,asmbl_45568 scaffold_5 + retained_intron 8748542-8748659 asmbl_45566,asmbl_45567,asmbl_45569 // Retained and Spliced Intron # retained_intron 8748797-8748963 (orient:+) max_ev_support = 3 # spliced_intron 8748797-8748963 (orient:+) max_ev_support = 3 scaffold_5 + intron 8748797-8748963 asmbl_45565,asmbl_45567,asmbl_45568,asmbl_45569 scaffold_5 + retained_intron 8748797-8748963 asmbl_45566 // Retained and Spliced Intron # retained_intron 8751102-8751176 (orient:+) max_ev_support = 1 # spliced_intron 8751102-8751176 (orient:+) max_ev_support = 2 scaffold_5 + intron 8751102-8751176 asmbl_45570 scaffold_5 + retained_intron 8751102-8751176 asmbl_45571 // Retained and Spliced Intron # retained_intron 8791720-8791899 (orient:+) max_ev_support = 1 # spliced_intron 8791720-8791899 (orient:+) max_ev_support = 2 scaffold_5 + intron 8791720-8791899 asmbl_45572,asmbl_45574 scaffold_5 + retained_intron 8791720-8791899 asmbl_45577 // Retained and Spliced Intron # retained_intron 8792001-8792555 (orient:+) max_ev_support = 1 # spliced_intron 8792001-8792555 (orient:+) max_ev_support = 2 scaffold_5 + intron 8792001-8792555 asmbl_45572,asmbl_45574,asmbl_45577 scaffold_5 + retained_intron 8792001-8792555 asmbl_45578 // Exon Skipping and Retention # skipped_exon 9083030-9083968 (orient:+) max_ev_support = 1 # retained_exon 9083285-9083410 (orient:+) max_ev_support = 2 scaffold_5 + retained_exons 9083285-9083410 asmbl_45599,asmbl_45603,asmbl_45605,asmbl_45606,asmbl_45607 scaffold_5 + intron_skips_exon 9083030-9083968 asmbl_45602,asmbl_45604 // Exon Skipping and Retention # skipped_exon 9084795-9085017 (orient:+) max_ev_support = 1 # retained_exon 9084882-9084950 (orient:+) max_ev_support = 2 scaffold_5 + retained_exons 9084882-9084950 asmbl_45599,asmbl_45602,asmbl_45603,asmbl_45604,asmbl_45605 scaffold_5 + intron_skips_exon 9084795-9085017 asmbl_45606,asmbl_45607 // Exon Skipping and Retention # skipped_exon 9085103-9085385 (orient:+) max_ev_support = 2 # retained_exon 9085213-9085337 (orient:+) max_ev_support = 2 scaffold_5 + retained_exons 9085213-9085337 asmbl_45599,asmbl_45603,asmbl_45604,asmbl_45605,asmbl_45607 scaffold_5 + intron_skips_exon 9085103-9085385 asmbl_45600 // Retained and Spliced Intron # retained_intron 9086221-9086396 (orient:+) max_ev_support = 2 # spliced_intron 9086221-9086396 (orient:+) max_ev_support = 2 scaffold_5 + intron 9086221-9086396 asmbl_45599,asmbl_45602,asmbl_45603,asmbl_45604,asmbl_45605,asmbl_45607 scaffold_5 + retained_intron 9086221-9086396 asmbl_45601 // Retained and Spliced Intron # retained_intron 9085103-9085212 (orient:+) max_ev_support = 1 # spliced_intron 9085103-9085212 (orient:+) max_ev_support = 2 scaffold_5 + intron 9085103-9085212 asmbl_45599,asmbl_45603,asmbl_45604,asmbl_45605,asmbl_45607 scaffold_5 + retained_intron 9085103-9085212 asmbl_45602,asmbl_45606 // Retained and Spliced Intron # retained_intron 9085103-9085385 (orient:+) max_ev_support = 1 # spliced_intron 9085103-9085385 (orient:+) max_ev_support = 2 scaffold_5 + intron 9085103-9085385 asmbl_45600 scaffold_5 + retained_intron 9085103-9085385 asmbl_45602,asmbl_45606 // Retained and Spliced Intron # retained_intron 9085338-9085435 (orient:+) max_ev_support = 1 # spliced_intron 9085338-9085435 (orient:+) max_ev_support = 2 scaffold_5 + intron 9085338-9085435 asmbl_45599,asmbl_45603,asmbl_45604,asmbl_45605,asmbl_45607 scaffold_5 + retained_intron 9085338-9085435 asmbl_45602,asmbl_45606 // Retained and Spliced Intron # retained_intron 9085614-9085705 (orient:+) max_ev_support = 1 # spliced_intron 9085614-9085705 (orient:+) max_ev_support = 2 scaffold_5 + intron 9085614-9085705 asmbl_45599,asmbl_45600,asmbl_45603,asmbl_45604,asmbl_45605,asmbl_45606,asmbl_45607 scaffold_5 + retained_intron 9085614-9085705 asmbl_45602 // Retained and Spliced Intron # retained_intron 9085892-9085964 (orient:+) max_ev_support = 1 # spliced_intron 9085892-9085964 (orient:+) max_ev_support = 2 scaffold_5 + intron 9085892-9085964 asmbl_45599,asmbl_45600,asmbl_45602,asmbl_45605,asmbl_45606,asmbl_45607 scaffold_5 + retained_intron 9085892-9085964 asmbl_45603,asmbl_45604 // Retained and Spliced Intron # retained_intron 9086017-9086102 (orient:+) max_ev_support = 1 # spliced_intron 9086017-9086102 (orient:+) max_ev_support = 2 scaffold_5 + intron 9086017-9086102 asmbl_45599,asmbl_45602,asmbl_45603,asmbl_45605,asmbl_45607 scaffold_5 + retained_intron 9086017-9086102 asmbl_45604 // Retained and Spliced Intron # retained_intron 9092983-9093116 (orient:+) max_ev_support = 1 # spliced_intron 9092983-9093116 (orient:+) max_ev_support = 2 scaffold_5 + intron 9092983-9093116 asmbl_45608 scaffold_5 + retained_intron 9092983-9093116 asmbl_45610 // Exon Skipping and Retention # skipped_exon 9648398-9650888 (orient:+) max_ev_support = 2 # retained_exon 9649907-9649963 (orient:+) max_ev_support = 2 scaffold_5 + retained_exons 9649907-9649963 asmbl_45626 scaffold_5 + intron_skips_exon 9648398-9650888 asmbl_45625 // Exon Skipping and Retention # skipped_exon 9692649-9693303 (orient:+) max_ev_support = 1 # retained_exon 9692756-9692987 (orient:+) max_ev_support = 2 scaffold_5 + retained_exons 9692756-9692987 asmbl_45631 scaffold_5 + intron_skips_exon 9692649-9693303 asmbl_45632 // Retained and Spliced Intron # retained_intron 9711452-9711758 (orient:+) max_ev_support = 1 # spliced_intron 9711452-9711758 (orient:+) max_ev_support = 1 scaffold_5 + intron 9711452-9711758 asmbl_45636 scaffold_5 + retained_intron 9711452-9711758 asmbl_45635 // Retained and Spliced Intron # retained_intron 9711452-9711983 (orient:+) max_ev_support = 1 # spliced_intron 9711452-9711983 (orient:+) max_ev_support = 2 scaffold_5 + intron 9711452-9711983 asmbl_45634 scaffold_5 + retained_intron 9711452-9711983 asmbl_45635 // Exon Skipping and Retention # skipped_exon 9811526-9811845 (orient:+) max_ev_support = 2 # retained_exon 9811654-9811724 (orient:+) max_ev_support = 2 scaffold_5 + retained_exons 9811654-9811724 asmbl_45647 scaffold_5 + intron_skips_exon 9811526-9811845 asmbl_45648 // Retained and Spliced Intron # retained_intron 10132156-10132315 (orient:+) max_ev_support = 2 # spliced_intron 10132156-10132315 (orient:+) max_ev_support = 3 scaffold_5 + intron 10132156-10132315 asmbl_45656 scaffold_5 + retained_intron 10132156-10132315 asmbl_45657 // Retained and Spliced Intron # retained_intron 10135753-10135836 (orient:+) max_ev_support = 1 # spliced_intron 10135753-10135836 (orient:+) max_ev_support = 3 scaffold_5 + intron 10135753-10135836 asmbl_45658 scaffold_5 + retained_intron 10135753-10135836 asmbl_45659 // Retained and Spliced Intron # retained_intron 10136208-10136286 (orient:+) max_ev_support = 2 # spliced_intron 10136208-10136286 (orient:+) max_ev_support = 3 scaffold_5 + intron 10136208-10136286 asmbl_45658 scaffold_5 + retained_intron 10136208-10136286 asmbl_45659 // Exon Skipping and Retention # skipped_exon 10170961-10171274 (orient:+) max_ev_support = 1 # retained_exon 10171023-10171094 (orient:+) max_ev_support = 2 scaffold_5 + retained_exons 10171023-10171094 asmbl_45663 scaffold_5 + intron_skips_exon 10170961-10171274 asmbl_45665 // Retained and Spliced Intron # retained_intron 10170936-10171022 (orient:+) max_ev_support = 1 # spliced_intron 10170936-10171022 (orient:+) max_ev_support = 2 scaffold_5 + intron 10170936-10171022 asmbl_45663 scaffold_5 + retained_intron 10170936-10171022 asmbl_45666 // Retained and Spliced Intron # retained_intron 10170961-10171274 (orient:+) max_ev_support = 1 # spliced_intron 10170961-10171274 (orient:+) max_ev_support = 1 scaffold_5 + intron 10170961-10171274 asmbl_45665 scaffold_5 + retained_intron 10170961-10171274 asmbl_45666 // Retained and Spliced Intron # retained_intron 10171095-10171274 (orient:+) max_ev_support = 1 # spliced_intron 10171095-10171274 (orient:+) max_ev_support = 2 scaffold_5 + intron 10171095-10171274 asmbl_45663 scaffold_5 + retained_intron 10171095-10171274 asmbl_45666 // Retained and Spliced Intron # retained_intron 10314754-10314836 (orient:+) max_ev_support = 2 # spliced_intron 10314754-10314836 (orient:+) max_ev_support = 2 scaffold_5 + intron 10314754-10314836 asmbl_45675 scaffold_5 + retained_intron 10314754-10314836 asmbl_45676,asmbl_45677 // Retained and Spliced Intron # retained_intron 10314896-10314969 (orient:+) max_ev_support = 2 # spliced_intron 10314896-10314969 (orient:+) max_ev_support = 2 scaffold_5 + intron 10314896-10314969 asmbl_45675,asmbl_45677 scaffold_5 + retained_intron 10314896-10314969 asmbl_45676 // Retained and Spliced Intron # retained_intron 10315083-10315200 (orient:+) max_ev_support = 2 # spliced_intron 10315083-10315200 (orient:+) max_ev_support = 2 scaffold_5 + intron 10315083-10315200 asmbl_45675 scaffold_5 + retained_intron 10315083-10315200 asmbl_45676,asmbl_45677 // Retained and Spliced Intron # retained_intron 10529716-10530671 (orient:+) max_ev_support = 3 # spliced_intron 10529716-10530671 (orient:+) max_ev_support = 1 scaffold_5 + intron 10529716-10530671 asmbl_45680 scaffold_5 + retained_intron 10529716-10530671 asmbl_45678,asmbl_45679 // Retained and Spliced Intron # retained_intron 10804890-10804988 (orient:+) max_ev_support = 1 # spliced_intron 10804890-10804988 (orient:+) max_ev_support = 2 scaffold_5 + intron 10804890-10804988 asmbl_45692,asmbl_45693,asmbl_45695,asmbl_45696 scaffold_5 + retained_intron 10804890-10804988 asmbl_45697 // Retained and Spliced Intron # retained_intron 10852168-10852260 (orient:+) max_ev_support = 1 # spliced_intron 10852168-10852260 (orient:+) max_ev_support = 2 scaffold_5 + intron 10852168-10852260 asmbl_45699,asmbl_45702 scaffold_5 + retained_intron 10852168-10852260 asmbl_45701 // Retained and Spliced Intron # retained_intron 10853174-10853266 (orient:+) max_ev_support = 1 # spliced_intron 10853174-10853266 (orient:+) max_ev_support = 2 scaffold_5 + intron 10853174-10853266 asmbl_45699,asmbl_45701,asmbl_45702 scaffold_5 + retained_intron 10853174-10853266 asmbl_45703 // Retained and Spliced Intron # retained_intron 10853360-10853477 (orient:+) max_ev_support = 1 # spliced_intron 10853360-10853477 (orient:+) max_ev_support = 2 scaffold_5 + intron 10853360-10853477 asmbl_45699,asmbl_45701,asmbl_45702 scaffold_5 + retained_intron 10853360-10853477 asmbl_45703 // Retained and Spliced Intron # retained_intron 10853540-10853712 (orient:+) max_ev_support = 1 # spliced_intron 10853540-10853712 (orient:+) max_ev_support = 2 scaffold_5 + intron 10853540-10853712 asmbl_45699,asmbl_45701,asmbl_45702,asmbl_45704 scaffold_5 + retained_intron 10853540-10853712 asmbl_45703 // Retained and Spliced Intron # retained_intron 10853790-10853941 (orient:+) max_ev_support = 1 # spliced_intron 10853790-10853941 (orient:+) max_ev_support = 2 scaffold_5 + intron 10853790-10853941 asmbl_45699,asmbl_45701,asmbl_45702,asmbl_45703 scaffold_5 + retained_intron 10853790-10853941 asmbl_45704 // Retained and Spliced Intron # retained_intron 10854006-10854093 (orient:+) max_ev_support = 1 # spliced_intron 10854006-10854093 (orient:+) max_ev_support = 2 scaffold_5 + intron 10854006-10854093 asmbl_45699,asmbl_45701,asmbl_45702 scaffold_5 + retained_intron 10854006-10854093 asmbl_45704 // Retained and Spliced Intron # retained_intron 10968500-10969203 (orient:+) max_ev_support = 2 # spliced_intron 10968500-10969203 (orient:+) max_ev_support = 2 scaffold_5 + intron 10968500-10969203 asmbl_45712 scaffold_5 + retained_intron 10968500-10969203 asmbl_45713 // Retained and Spliced Intron # retained_intron 10969290-10969590 (orient:+) max_ev_support = 2 # spliced_intron 10969290-10969590 (orient:+) max_ev_support = 2 scaffold_5 + intron 10969290-10969590 asmbl_45712,asmbl_45713,asmbl_45716 scaffold_5 + retained_intron 10969290-10969590 asmbl_45714 // Retained and Spliced Intron # retained_intron 10970546-10970703 (orient:+) max_ev_support = 1 # spliced_intron 10970546-10970703 (orient:+) max_ev_support = 2 scaffold_5 + intron 10970546-10970703 asmbl_45712,asmbl_45713 scaffold_5 + retained_intron 10970546-10970703 asmbl_45716 // Retained and Spliced Intron # retained_intron 10974515-10975047 (orient:+) max_ev_support = 1 # spliced_intron 10974515-10975047 (orient:+) max_ev_support = 3 scaffold_5 + intron 10974515-10975047 asmbl_45717 scaffold_5 + retained_intron 10974515-10975047 asmbl_45718 // Exon Skipping and Retention # skipped_exon 11638405-11639829 (orient:+) max_ev_support = 3 # retained_exon 11639308-11639396 (orient:+) max_ev_support = 3 scaffold_5 + retained_exons 11639308-11639396 asmbl_45752 scaffold_5 + intron_skips_exon 11638405-11639829 asmbl_45754 // Retained and Spliced Intron # retained_intron 11644624-11644686 (orient:+) max_ev_support = 2 # spliced_intron 11644624-11644686 (orient:+) max_ev_support = 1 scaffold_5 + intron 11644624-11644686 asmbl_45756 scaffold_5 + retained_intron 11644624-11644686 asmbl_45755 // Retained and Spliced Intron # retained_intron 11802717-11802845 (orient:+) max_ev_support = 1 # spliced_intron 11802717-11802845 (orient:+) max_ev_support = 2 scaffold_5 + intron 11802717-11802845 asmbl_45760,asmbl_45762 scaffold_5 + retained_intron 11802717-11802845 asmbl_45761 // Exon Skipping and Retention # skipped_exon 11913476-11914441 (orient:+) max_ev_support = 2 # retained_exon 11913811-11913879 (orient:+) max_ev_support = 2 scaffold_5 + retained_exons 11913811-11913879 asmbl_45771 scaffold_5 + intron_skips_exon 11913476-11914441 asmbl_45772 // Exon Skipping and Retention # skipped_exon 12658224-12660537 (orient:+) max_ev_support = 1 # retained_exon 12658313-12658374 (orient:+) max_ev_support = 2 scaffold_5 + retained_exons 12658313-12658374 asmbl_45807,asmbl_45811,asmbl_45813 scaffold_5 + intron_skips_exon 12658224-12660537 asmbl_45812 // Retained and Spliced Intron # retained_intron 12660558-12661236 (orient:+) max_ev_support = 2 # spliced_intron 12660558-12661236 (orient:+) max_ev_support = 2 scaffold_5 + intron 12660558-12661236 asmbl_45807,asmbl_45812,asmbl_45814 scaffold_5 + retained_intron 12660558-12661236 asmbl_45810,asmbl_45811,asmbl_45813 // Retained and Spliced Intron # retained_intron 12840721-12841915 (orient:+) max_ev_support = 3 # spliced_intron 12840721-12841915 (orient:+) max_ev_support = 3 scaffold_5 + intron 12840721-12841915 asmbl_45825,asmbl_45827 scaffold_5 + retained_intron 12840721-12841915 asmbl_45824,asmbl_45826,asmbl_45828,asmbl_45829 // Retained and Spliced Intron # retained_intron 12842021-12842175 (orient:+) max_ev_support = 3 # spliced_intron 12842021-12842175 (orient:+) max_ev_support = 3 scaffold_5 + intron 12842021-12842175 asmbl_45825,asmbl_45827,asmbl_45828,asmbl_45829 scaffold_5 + retained_intron 12842021-12842175 asmbl_45824,asmbl_45826 // Retained and Spliced Intron # retained_intron 12842254-12842348 (orient:+) max_ev_support = 2 # spliced_intron 12842254-12842348 (orient:+) max_ev_support = 3 scaffold_5 + intron 12842254-12842348 asmbl_45825,asmbl_45826,asmbl_45828 scaffold_5 + retained_intron 12842254-12842348 asmbl_45824,asmbl_45827,asmbl_45829 // Retained and Spliced Intron # retained_intron 12842443-12842549 (orient:+) max_ev_support = 2 # spliced_intron 12842443-12842549 (orient:+) max_ev_support = 3 scaffold_5 + intron 12842443-12842549 asmbl_45824,asmbl_45825,asmbl_45828 scaffold_5 + retained_intron 12842443-12842549 asmbl_45826,asmbl_45827,asmbl_45829 // Retained and Spliced Intron # retained_intron 13022943-13023169 (orient:+) max_ev_support = 2 # spliced_intron 13022943-13023169 (orient:+) max_ev_support = 2 scaffold_5 + intron 13022943-13023169 asmbl_45838 scaffold_5 + retained_intron 13022943-13023169 asmbl_45839 // Retained and Spliced Intron # retained_intron 13022943-13023173 (orient:+) max_ev_support = 2 # spliced_intron 13022943-13023173 (orient:+) max_ev_support = 1 scaffold_5 + intron 13022943-13023173 asmbl_45840 scaffold_5 + retained_intron 13022943-13023173 asmbl_45839 // Retained and Spliced Intron # retained_intron 13067434-13067568 (orient:+) max_ev_support = 2 # spliced_intron 13067434-13067568 (orient:+) max_ev_support = 2 scaffold_5 + intron 13067434-13067568 asmbl_45846 scaffold_5 + retained_intron 13067434-13067568 asmbl_45847 // Retained and Spliced Intron # retained_intron 13110778-13111063 (orient:+) max_ev_support = 2 # spliced_intron 13110778-13111063 (orient:+) max_ev_support = 2 scaffold_5 + intron 13110778-13111063 asmbl_45854 scaffold_5 + retained_intron 13110778-13111063 asmbl_45855 // Retained and Spliced Intron # retained_intron 13162731-13162841 (orient:+) max_ev_support = 1 # spliced_intron 13162731-13162841 (orient:+) max_ev_support = 1 scaffold_5 + intron 13162731-13162841 asmbl_45856 scaffold_5 + retained_intron 13162731-13162841 asmbl_45857 // Exon Skipping and Retention # skipped_exon 13235186-13235685 (orient:+) max_ev_support = 2 # retained_exon 13235395-13235505 (orient:+) max_ev_support = 1 scaffold_5 + retained_exons 13235395-13235505 asmbl_45864 scaffold_5 + intron_skips_exon 13235186-13235685 asmbl_45862,asmbl_45863 // Exon Skipping and Retention # skipped_exon 13244510-13245544 (orient:+) max_ev_support = 2 # retained_exon 13245174-13245236 (orient:+) max_ev_support = 2 scaffold_5 + retained_exons 13245174-13245236 asmbl_45868,asmbl_45869 scaffold_5 + intron_skips_exon 13244510-13245544 asmbl_45867,asmbl_45870 // Retained and Spliced Intron # retained_intron 13246847-13246949 (orient:+) max_ev_support = 1 # spliced_intron 13246847-13246949 (orient:+) max_ev_support = 2 scaffold_5 + intron 13246847-13246949 asmbl_45867,asmbl_45868,asmbl_45870 scaffold_5 + retained_intron 13246847-13246949 asmbl_45869 // Retained and Spliced Intron # retained_intron 13881229-13881333 (orient:+) max_ev_support = 1 # spliced_intron 13881229-13881333 (orient:+) max_ev_support = 2 scaffold_5 + intron 13881229-13881333 asmbl_45886,asmbl_45887 scaffold_5 + retained_intron 13881229-13881333 asmbl_45888 // Retained and Spliced Intron # retained_intron 14022515-14022662 (orient:+) max_ev_support = 3 # spliced_intron 14022515-14022662 (orient:+) max_ev_support = 3 scaffold_5 + intron 14022515-14022662 asmbl_45891 scaffold_5 + retained_intron 14022515-14022662 asmbl_45892 // Retained and Spliced Intron # retained_intron 14125735-14126570 (orient:+) max_ev_support = 2 # spliced_intron 14125735-14126570 (orient:+) max_ev_support = 1 scaffold_5 + intron 14125735-14126570 asmbl_45902 scaffold_5 + retained_intron 14125735-14126570 asmbl_45901 // Retained and Spliced Intron # retained_intron 14261375-14261517 (orient:+) max_ev_support = 2 # spliced_intron 14261375-14261517 (orient:+) max_ev_support = 2 scaffold_5 + intron 14261375-14261517 asmbl_45913,asmbl_45914,asmbl_45915,asmbl_45916,asmbl_45919,asmbl_45920,asmbl_45921,asmbl_45922,asmbl_45923 scaffold_5 + retained_intron 14261375-14261517 asmbl_45912 // Retained and Spliced Intron # retained_intron 14261743-14261868 (orient:+) max_ev_support = 2 # spliced_intron 14261743-14261868 (orient:+) max_ev_support = 1 scaffold_5 + intron 14261743-14261868 asmbl_45916,asmbl_45919,asmbl_45920,asmbl_45921,asmbl_45922,asmbl_45923 scaffold_5 + retained_intron 14261743-14261868 asmbl_45913 // Retained and Spliced Intron # retained_intron 14261932-14262394 (orient:+) max_ev_support = 2 # spliced_intron 14261932-14262394 (orient:+) max_ev_support = 1 scaffold_5 + intron 14261932-14262394 asmbl_45919,asmbl_45921,asmbl_45923 scaffold_5 + retained_intron 14261932-14262394 asmbl_45913,asmbl_45920,asmbl_45922 // Exon Skipping and Retention # skipped_exon 14262861-14263469 (orient:+) max_ev_support = 2 # retained_exon 14263019-14263099 (orient:+) max_ev_support = 2 scaffold_5 + retained_exons 14263019-14263099 asmbl_45914,asmbl_45916,asmbl_45917,asmbl_45920,asmbl_45921 scaffold_5 + intron_skips_exon 14262861-14263469 asmbl_45915 // Exon Skipping and Retention # skipped_exon 14261743-14262734 (orient:+) max_ev_support = 2 # retained_exon 14261869-14261931 (orient:+) max_ev_support = 1 scaffold_5 + retained_exons 14261869-14261931 asmbl_45916 scaffold_5 + intron_skips_exon 14261743-14262734 asmbl_45914,asmbl_45915 // Retained and Spliced Intron # retained_intron 14262861-14263018 (orient:+) max_ev_support = 1 # spliced_intron 14262861-14263018 (orient:+) max_ev_support = 2 scaffold_5 + intron 14262861-14263018 asmbl_45914,asmbl_45916,asmbl_45917,asmbl_45920,asmbl_45921 scaffold_5 + retained_intron 14262861-14263018 asmbl_45918,asmbl_45919,asmbl_45923 // Retained and Spliced Intron # retained_intron 14262861-14263469 (orient:+) max_ev_support = 1 # spliced_intron 14262861-14263469 (orient:+) max_ev_support = 2 scaffold_5 + intron 14262861-14263469 asmbl_45915 scaffold_5 + retained_intron 14262861-14263469 asmbl_45918,asmbl_45919,asmbl_45923 // Retained and Spliced Intron # retained_intron 14263100-14263469 (orient:+) max_ev_support = 1 # spliced_intron 14263100-14263469 (orient:+) max_ev_support = 2 scaffold_5 + intron 14263100-14263469 asmbl_45914,asmbl_45916,asmbl_45917,asmbl_45920,asmbl_45921 scaffold_5 + retained_intron 14263100-14263469 asmbl_45918,asmbl_45919,asmbl_45923 // Exon Skipping and Retention # skipped_exon 14261743-14262734 (orient:+) max_ev_support = 2 # retained_exon 14261869-14262430 (orient:+) max_ev_support = 1 scaffold_5 + retained_exons 14261869-14261931,14262395-14262430 asmbl_45919,asmbl_45921,asmbl_45923 scaffold_5 + retained_exons 14261869-14262430 asmbl_45920 scaffold_5 + intron_skips_exon 14261743-14262734 asmbl_45914,asmbl_45915 // Exon Skipping and Retention # skipped_exon 14261932-14262734 (orient:+) max_ev_support = 1 # retained_exon 14262395-14262430 (orient:+) max_ev_support = 1 scaffold_5 + retained_exons 14262395-14262430 asmbl_45919,asmbl_45921,asmbl_45923 scaffold_5 + intron_skips_exon 14261932-14262734 asmbl_45916 // Retained and Spliced Intron # retained_intron 14537738-14537847 (orient:+) max_ev_support = 2 # spliced_intron 14537738-14537847 (orient:+) max_ev_support = 2 scaffold_5 + intron 14537738-14537847 asmbl_45941 scaffold_5 + retained_intron 14537738-14537847 asmbl_45942 // Exon Skipping and Retention # skipped_exon 14679462-14680588 (orient:+) max_ev_support = 3 # retained_exon 14680362-14680453 (orient:+) max_ev_support = 3 scaffold_5 + retained_exons 14680362-14680453 asmbl_45954 scaffold_5 + intron_skips_exon 14679462-14680588 asmbl_45955 // Retained and Spliced Intron # retained_intron 14680454-14680588 (orient:+) max_ev_support = 2 # spliced_intron 14680454-14680588 (orient:+) max_ev_support = 3 scaffold_5 + intron 14680454-14680588 asmbl_45954 scaffold_5 + retained_intron 14680454-14680588 asmbl_45956 // Exon Skipping and Retention # skipped_exon 15016107-15017415 (orient:+) max_ev_support = 2 # retained_exon 15017060-15017204 (orient:+) max_ev_support = 2 scaffold_5 + retained_exons 15017060-15017204 asmbl_45973 scaffold_5 + intron_skips_exon 15016107-15017415 asmbl_45974 // Retained and Spliced Intron # retained_intron 15305751-15305837 (orient:+) max_ev_support = 1 # spliced_intron 15305751-15305837 (orient:+) max_ev_support = 3 scaffold_5 + intron 15305751-15305837 asmbl_45985,asmbl_45986 scaffold_5 + retained_intron 15305751-15305837 asmbl_45987 // Exon Skipping and Retention # skipped_exon 15468641-15469211 (orient:+) max_ev_support = 1 # retained_exon 15468880-15469028 (orient:+) max_ev_support = 1 scaffold_5 + retained_exons 15468880-15469028 asmbl_45991 scaffold_5 + intron_skips_exon 15468641-15469211 asmbl_45992 // Exon Skipping and Retention # skipped_exon 15681367-15683372 (orient:+) max_ev_support = 1 # retained_exon 15683095-15683232 (orient:+) max_ev_support = 2 scaffold_5 + retained_exons 15683095-15683232 asmbl_46004,asmbl_46007 scaffold_5 + intron_skips_exon 15681367-15683372 asmbl_46006 // Exon Skipping and Retention # skipped_exon 15703896-15706366 (orient:+) max_ev_support = 1 # retained_exon 15706085-15706211 (orient:+) max_ev_support = 2 scaffold_5 + retained_exons 15706085-15706211 asmbl_46009,asmbl_46012 scaffold_5 + intron_skips_exon 15703896-15706366 asmbl_46010 // Exon Skipping and Retention # skipped_exon 15703621-15706084 (orient:+) max_ev_support = 2 # retained_exon 15703769-15703895 (orient:+) max_ev_support = 1 scaffold_5 + retained_exons 15703769-15703895 asmbl_46010 scaffold_5 + intron_skips_exon 15703621-15706084 asmbl_46009,asmbl_46012 // Retained and Spliced Intron # retained_intron 15766384-15766471 (orient:+) max_ev_support = 1 # spliced_intron 15766384-15766471 (orient:+) max_ev_support = 2 scaffold_5 + intron 15766384-15766471 asmbl_46014,asmbl_46019 scaffold_5 + retained_intron 15766384-15766471 asmbl_46016,asmbl_46017,asmbl_46018,asmbl_46020,asmbl_46022,asmbl_46023 // Retained and Spliced Intron # retained_intron 15766542-15766727 (orient:+) max_ev_support = 1 # spliced_intron 15766542-15766727 (orient:+) max_ev_support = 2 scaffold_5 + intron 15766542-15766727 asmbl_46014,asmbl_46018,asmbl_46019,asmbl_46020,asmbl_46022 scaffold_5 + retained_intron 15766542-15766727 asmbl_46016,asmbl_46017,asmbl_46023 // Retained and Spliced Intron # retained_intron 15766781-15766917 (orient:+) max_ev_support = 1 # spliced_intron 15766781-15766917 (orient:+) max_ev_support = 2 scaffold_5 + intron 15766781-15766917 asmbl_46014,asmbl_46018,asmbl_46019,asmbl_46020,asmbl_46022,asmbl_46023 scaffold_5 + retained_intron 15766781-15766917 asmbl_46016,asmbl_46017 // Retained and Spliced Intron # retained_intron 15767254-15767399 (orient:+) max_ev_support = 1 # spliced_intron 15767254-15767399 (orient:+) max_ev_support = 2 scaffold_5 + intron 15767254-15767399 asmbl_46014,asmbl_46017,asmbl_46020,asmbl_46022 scaffold_5 + retained_intron 15767254-15767399 asmbl_46016,asmbl_46018,asmbl_46019,asmbl_46024 // Retained and Spliced Intron # retained_intron 15765637-15765727 (orient:+) max_ev_support = 1 # spliced_intron 15765637-15765727 (orient:+) max_ev_support = 2 scaffold_5 + intron 15765637-15765727 asmbl_46014,asmbl_46016 scaffold_5 + retained_intron 15765637-15765727 asmbl_46017,asmbl_46018,asmbl_46019,asmbl_46020 // Retained and Spliced Intron # retained_intron 15764229-15764723 (orient:+) max_ev_support = 1 # spliced_intron 15764229-15764723 (orient:+) max_ev_support = 2 scaffold_5 + intron 15764229-15764723 asmbl_46014,asmbl_46016,asmbl_46017,asmbl_46018,asmbl_46019,asmbl_46020 scaffold_5 + retained_intron 15764229-15764723 asmbl_46021 // Retained and Spliced Intron # retained_intron 15765826-15766010 (orient:+) max_ev_support = 1 # spliced_intron 15765826-15766010 (orient:+) max_ev_support = 2 scaffold_5 + intron 15765826-15766010 asmbl_46014,asmbl_46016,asmbl_46017,asmbl_46018,asmbl_46019,asmbl_46020 scaffold_5 + retained_intron 15765826-15766010 asmbl_46022 // Retained and Spliced Intron # retained_intron 15767010-15767201 (orient:+) max_ev_support = 1 # spliced_intron 15767010-15767201 (orient:+) max_ev_support = 2 scaffold_5 + intron 15767010-15767201 asmbl_46014,asmbl_46016,asmbl_46017,asmbl_46018,asmbl_46019,asmbl_46020,asmbl_46022,asmbl_46023 scaffold_5 + retained_intron 15767010-15767201 asmbl_46024 // Exon Skipping and Retention # skipped_exon 15894091-15896094 (orient:+) max_ev_support = 2 # retained_exon 15894284-15894311 (orient:+) max_ev_support = 2 scaffold_5 + retained_exons 15894284-15894311 asmbl_46028,asmbl_46031 scaffold_5 + intron_skips_exon 15894091-15896094 asmbl_46027,asmbl_46030 // Retained and Spliced Intron # retained_intron 16091466-16091548 (orient:+) max_ev_support = 1 # spliced_intron 16091466-16091548 (orient:+) max_ev_support = 2 scaffold_5 + intron 16091466-16091548 asmbl_46046 scaffold_5 + retained_intron 16091466-16091548 asmbl_46047 // Retained and Spliced Intron # retained_intron 16206282-16206377 (orient:+) max_ev_support = 1 # spliced_intron 16206282-16206377 (orient:+) max_ev_support = 1 scaffold_5 + intron 16206282-16206377 asmbl_46062 scaffold_5 + retained_intron 16206282-16206377 asmbl_46060 // Retained and Spliced Intron # retained_intron 16206282-16206597 (orient:+) max_ev_support = 1 # spliced_intron 16206282-16206597 (orient:+) max_ev_support = 3 scaffold_5 + intron 16206282-16206597 asmbl_46059,asmbl_46061 scaffold_5 + retained_intron 16206282-16206597 asmbl_46060 // Retained and Spliced Intron # retained_intron 16246188-16246207 (orient:+) max_ev_support = 4 # spliced_intron 16246188-16246207 (orient:+) max_ev_support = 1 scaffold_5 + intron 16246188-16246207 asmbl_46065 scaffold_5 + retained_intron 16246188-16246207 asmbl_46064 // Retained and Spliced Intron # retained_intron 16258346-16258731 (orient:+) max_ev_support = 1 # spliced_intron 16258346-16258731 (orient:+) max_ev_support = 2 scaffold_5 + intron 16258346-16258731 asmbl_46067 scaffold_5 + retained_intron 16258346-16258731 asmbl_46068 // Retained and Spliced Intron # retained_intron 16320680-16320777 (orient:+) max_ev_support = 1 # spliced_intron 16320680-16320777 (orient:+) max_ev_support = 2 scaffold_5 + intron 16320680-16320777 asmbl_46082 scaffold_5 + retained_intron 16320680-16320777 asmbl_46084 // Retained and Spliced Intron # retained_intron 16321133-16321283 (orient:+) max_ev_support = 1 # spliced_intron 16321133-16321283 (orient:+) max_ev_support = 2 scaffold_5 + intron 16321133-16321283 asmbl_46082 scaffold_5 + retained_intron 16321133-16321283 asmbl_46084 // Retained and Spliced Intron # retained_intron 16314540-16314719 (orient:+) max_ev_support = 1 # spliced_intron 16314540-16314719 (orient:+) max_ev_support = 2 scaffold_5 + intron 16314540-16314719 asmbl_46082,asmbl_46084 scaffold_5 + retained_intron 16314540-16314719 asmbl_46085 // Retained and Spliced Intron # retained_intron 16650755-16650859 (orient:+) max_ev_support = 4 # spliced_intron 16650755-16650859 (orient:+) max_ev_support = 2 scaffold_5 + intron 16650755-16650859 asmbl_46113,asmbl_46114,asmbl_46115,asmbl_46116 scaffold_5 + retained_intron 16650755-16650859 asmbl_46112 // Exon Skipping and Retention # skipped_exon 16645579-16646640 (orient:+) max_ev_support = 2 # retained_exon 16646474-16646497 (orient:+) max_ev_support = 2 scaffold_5 + retained_exons 16646474-16646497 asmbl_46113 scaffold_5 + intron_skips_exon 16645579-16646640 asmbl_46114 // Retained and Spliced Intron # retained_intron 16648366-16648547 (orient:+) max_ev_support = 2 # spliced_intron 16648366-16648547 (orient:+) max_ev_support = 2 scaffold_5 + intron 16648366-16648547 asmbl_46113,asmbl_46114,asmbl_46116 scaffold_5 + retained_intron 16648366-16648547 asmbl_46115 // Exon Skipping and Retention # skipped_exon 17025179-17028124 (orient:+) max_ev_support = 1 # retained_exon 17026978-17027051 (orient:+) max_ev_support = 3 scaffold_5 + retained_exons 17026978-17027051 asmbl_46130 scaffold_5 + intron_skips_exon 17025179-17028124 asmbl_46132 // Exon Skipping and Retention # skipped_exon 17036765-17037141 (orient:+) max_ev_support = 3 # retained_exon 17036890-17037031 (orient:+) max_ev_support = 3 scaffold_5 + retained_exons 17036890-17037031 asmbl_46134 scaffold_5 + intron_skips_exon 17036765-17037141 asmbl_46133 // Exon Skipping and Retention # skipped_exon 17192140-17194833 (orient:+) max_ev_support = 1 # retained_exon 17194625-17194725 (orient:+) max_ev_support = 1 scaffold_5 + retained_exons 17194625-17194725 asmbl_46142 scaffold_5 + intron_skips_exon 17192140-17194833 asmbl_46143 // Exon Skipping and Retention # skipped_exon 17191832-17194624 (orient:+) max_ev_support = 1 # retained_exon 17192039-17192139 (orient:+) max_ev_support = 1 scaffold_5 + retained_exons 17192039-17192139 asmbl_46143 scaffold_5 + intron_skips_exon 17191832-17194624 asmbl_46142 // Exon Skipping and Retention # skipped_exon 17224836-17226346 (orient:+) max_ev_support = 1 # retained_exon 17225624-17225757 (orient:+) max_ev_support = 2 scaffold_5 + retained_exons 17225624-17225757 asmbl_46147 scaffold_5 + intron_skips_exon 17224836-17226346 asmbl_46151 // Retained and Spliced Intron # retained_intron 17226444-17226936 (orient:+) max_ev_support = 2 # spliced_intron 17226444-17226936 (orient:+) max_ev_support = 1 scaffold_5 + intron 17226444-17226936 asmbl_46153 scaffold_5 + retained_intron 17226444-17226936 asmbl_46150,asmbl_46152 // Retained and Spliced Intron # retained_intron 17226676-17226936 (orient:+) max_ev_support = 2 # spliced_intron 17226676-17226936 (orient:+) max_ev_support = 2 scaffold_5 + intron 17226676-17226936 asmbl_46147,asmbl_46151 scaffold_5 + retained_intron 17226676-17226936 asmbl_46150,asmbl_46152 // Retained and Spliced Intron # retained_intron 17301487-17301540 (orient:+) max_ev_support = 2 # spliced_intron 17301487-17301540 (orient:+) max_ev_support = 1 scaffold_5 + intron 17301487-17301540 asmbl_46160 scaffold_5 + retained_intron 17301487-17301540 asmbl_46158,asmbl_46159 // Exon Skipping and Retention # skipped_exon 17976293-17978662 (orient:+) max_ev_support = 1 # retained_exon 17976420-17976597 (orient:+) max_ev_support = 2 scaffold_5 + retained_exons 17976420-17976597 asmbl_46198 scaffold_5 + intron_skips_exon 17976293-17978662 asmbl_46199 // Retained and Spliced Intron # retained_intron 18249279-18249475 (orient:+) max_ev_support = 3 # spliced_intron 18249279-18249475 (orient:+) max_ev_support = 2 scaffold_5 + intron 18249279-18249475 asmbl_46224 scaffold_5 + retained_intron 18249279-18249475 asmbl_46223,asmbl_46225,asmbl_46226 // Retained and Spliced Intron # retained_intron 18255195-18255273 (orient:+) max_ev_support = 2 # spliced_intron 18255195-18255273 (orient:+) max_ev_support = 3 scaffold_5 + intron 18255195-18255273 asmbl_46227 scaffold_5 + retained_intron 18255195-18255273 asmbl_46228 // Retained and Spliced Intron # retained_intron 18255418-18255824 (orient:+) max_ev_support = 1 # spliced_intron 18255418-18255824 (orient:+) max_ev_support = 3 scaffold_5 + intron 18255418-18255824 asmbl_46227,asmbl_46228 scaffold_5 + retained_intron 18255418-18255824 asmbl_46231 // Retained and Spliced Intron # retained_intron 18259179-18259303 (orient:+) max_ev_support = 2 # spliced_intron 18259179-18259303 (orient:+) max_ev_support = 3 scaffold_5 + intron 18259179-18259303 asmbl_46232 scaffold_5 + retained_intron 18259179-18259303 asmbl_46233 // Retained and Spliced Intron # retained_intron 18264036-18264289 (orient:+) max_ev_support = 1 # spliced_intron 18264036-18264289 (orient:+) max_ev_support = 2 scaffold_5 + intron 18264036-18264289 asmbl_46235,asmbl_46236,asmbl_46238,asmbl_46240 scaffold_5 + retained_intron 18264036-18264289 asmbl_46234,asmbl_46239 // Retained and Spliced Intron # retained_intron 18265468-18265781 (orient:+) max_ev_support = 2 # spliced_intron 18265468-18265781 (orient:+) max_ev_support = 2 scaffold_5 + intron 18265468-18265781 asmbl_46235,asmbl_46240,asmbl_46243 scaffold_5 + retained_intron 18265468-18265781 asmbl_46234,asmbl_46236,asmbl_46238,asmbl_46244 // Exon Skipping and Retention # skipped_exon 18261866-18263891 (orient:+) max_ev_support = 2 # retained_exon 18262627-18262698 (orient:+) max_ev_support = 2 scaffold_5 + retained_exons 18262627-18262698 asmbl_46236,asmbl_46240 scaffold_5 + intron_skips_exon 18261866-18263891 asmbl_46235,asmbl_46238,asmbl_46239 // Retained and Spliced Intron # retained_intron 18261385-18261769 (orient:+) max_ev_support = 1 # spliced_intron 18261385-18261769 (orient:+) max_ev_support = 2 scaffold_5 + intron 18261385-18261769 asmbl_46235,asmbl_46236,asmbl_46238,asmbl_46239,asmbl_46240,asmbl_46241 scaffold_5 + retained_intron 18261385-18261769 asmbl_46242 // Exon Skipping and Retention # skipped_exon 18327976-18328372 (orient:+) max_ev_support = 1 # retained_exon 18328102-18328179 (orient:+) max_ev_support = 2 scaffold_5 + retained_exons 18328102-18328179 asmbl_46250 scaffold_5 + intron_skips_exon 18327976-18328372 asmbl_46251 // Retained and Spliced Intron # retained_intron 18404543-18404691 (orient:+) max_ev_support = 1 # spliced_intron 18404543-18404691 (orient:+) max_ev_support = 2 scaffold_5 + intron 18404543-18404691 asmbl_46260 scaffold_5 + retained_intron 18404543-18404691 asmbl_46261 // Retained and Spliced Intron # retained_intron 18561228-18562070 (orient:+) max_ev_support = 5 # spliced_intron 18561228-18562070 (orient:+) max_ev_support = 4 scaffold_5 + intron 18561228-18562070 asmbl_46268,asmbl_46269,asmbl_46273 scaffold_5 + retained_intron 18561228-18562070 asmbl_46266,asmbl_46267 // Retained and Spliced Intron # retained_intron 18562167-18562393 (orient:+) max_ev_support = 3 # spliced_intron 18562167-18562393 (orient:+) max_ev_support = 4 scaffold_5 + intron 18562167-18562393 asmbl_46268,asmbl_46269,asmbl_46273 scaffold_5 + retained_intron 18562167-18562393 asmbl_46266,asmbl_46267 // Retained and Spliced Intron # retained_intron 18561018-18561149 (orient:+) max_ev_support = 2 # spliced_intron 18561018-18561149 (orient:+) max_ev_support = 4 scaffold_5 + intron 18561018-18561149 asmbl_46267,asmbl_46268,asmbl_46269,asmbl_46271,asmbl_46272,asmbl_46273 scaffold_5 + retained_intron 18561018-18561149 asmbl_46270 // Retained and Spliced Intron # retained_intron 18561081-18561149 (orient:+) max_ev_support = 2 # spliced_intron 18561081-18561149 (orient:+) max_ev_support = 3 scaffold_5 + intron 18561081-18561149 asmbl_46266 scaffold_5 + retained_intron 18561081-18561149 asmbl_46270 // Retained and Spliced Intron # retained_intron 18574353-18574611 (orient:+) max_ev_support = 1 # spliced_intron 18574353-18574611 (orient:+) max_ev_support = 3 scaffold_5 + intron 18574353-18574611 asmbl_46274 scaffold_5 + retained_intron 18574353-18574611 asmbl_46276 // Retained and Spliced Intron # retained_intron 18808969-18809061 (orient:+) max_ev_support = 1 # spliced_intron 18808969-18809061 (orient:+) max_ev_support = 2 scaffold_5 + intron 18808969-18809061 asmbl_46288 scaffold_5 + retained_intron 18808969-18809061 asmbl_46289 // Exon Skipping and Retention # skipped_exon 18818689-18820189 (orient:+) max_ev_support = 1 # retained_exon 18819599-18819678 (orient:+) max_ev_support = 2 scaffold_5 + retained_exons 18819599-18819678 asmbl_46291 scaffold_5 + intron_skips_exon 18818689-18820189 asmbl_46292,asmbl_46293 // Exon Skipping and Retention # skipped_exon 18819679-18821046 (orient:+) max_ev_support = 2 # retained_exon 18820190-18820269 (orient:+) max_ev_support = 1 scaffold_5 + retained_exons 18820190-18820269 asmbl_46292,asmbl_46293 scaffold_5 + intron_skips_exon 18819679-18821046 asmbl_46291 // Retained and Spliced Intron # retained_intron 18981494-18981592 (orient:+) max_ev_support = 2 # spliced_intron 18981494-18981592 (orient:+) max_ev_support = 3 scaffold_5 + intron 18981494-18981592 asmbl_46297 scaffold_5 + retained_intron 18981494-18981592 asmbl_46298 // Retained and Spliced Intron # retained_intron 19440530-19440725 (orient:+) max_ev_support = 2 # spliced_intron 19440530-19440725 (orient:+) max_ev_support = 3 scaffold_5 + intron 19440530-19440725 asmbl_46319 scaffold_5 + retained_intron 19440530-19440725 asmbl_46320 // Retained and Spliced Intron # retained_intron 19648196-19648470 (orient:+) max_ev_support = 7 # spliced_intron 19648196-19648470 (orient:+) max_ev_support = 1 scaffold_5 + intron 19648196-19648470 asmbl_46329 scaffold_5 + retained_intron 19648196-19648470 asmbl_46328 // Retained and Spliced Intron # retained_intron 2254-2461 (orient:+) max_ev_support = 2 # spliced_intron 2254-2461 (orient:+) max_ev_support = 1 scaffold_500 + intron 2254-2461 asmbl_46492,asmbl_46496 scaffold_500 + retained_intron 2254-2461 asmbl_46488,asmbl_46489,asmbl_46490,asmbl_46491,asmbl_46493 // Retained and Spliced Intron # retained_intron 2522-2745 (orient:+) max_ev_support = 2 # spliced_intron 2522-2745 (orient:+) max_ev_support = 1 scaffold_500 + intron 2522-2745 asmbl_46491,asmbl_46492,asmbl_46496 scaffold_500 + retained_intron 2522-2745 asmbl_46488,asmbl_46489,asmbl_46493 // Retained and Spliced Intron # retained_intron 2522-2857 (orient:+) max_ev_support = 2 # spliced_intron 2522-2857 (orient:+) max_ev_support = 1 scaffold_500 + intron 2522-2857 asmbl_46490 scaffold_500 + retained_intron 2522-2857 asmbl_46488,asmbl_46489,asmbl_46493 // Retained and Spliced Intron # retained_intron 2902-3472 (orient:+) max_ev_support = 2 # spliced_intron 2902-3472 (orient:+) max_ev_support = 1 scaffold_500 + intron 2902-3472 asmbl_46489,asmbl_46490,asmbl_46491,asmbl_46492 scaffold_500 + retained_intron 2902-3472 asmbl_46488,asmbl_46493 // Retained and Spliced Intron # retained_intron 2115-2216 (orient:+) max_ev_support = 2 # spliced_intron 2115-2216 (orient:+) max_ev_support = 2 scaffold_500 + intron 2115-2216 asmbl_46488,asmbl_46496 scaffold_500 + retained_intron 2115-2216 asmbl_46489,asmbl_46490,asmbl_46491,asmbl_46492,asmbl_46493 // Retained and Spliced Intron # retained_intron 746-1074 (orient:+) max_ev_support = 1 # spliced_intron 746-1074 (orient:+) max_ev_support = 1 scaffold_500 + intron 746-1074 asmbl_46488,asmbl_46489,asmbl_46490,asmbl_46491,asmbl_46492 scaffold_500 + retained_intron 746-1074 asmbl_46494,asmbl_46495 // Retained and Spliced Intron # retained_intron 1334-1625 (orient:+) max_ev_support = 1 # spliced_intron 1334-1625 (orient:+) max_ev_support = 3 scaffold_500 + intron 1334-1625 asmbl_46488,asmbl_46489,asmbl_46490,asmbl_46491,asmbl_46492 scaffold_500 + retained_intron 1334-1625 asmbl_46495 // Retained and Spliced Intron # retained_intron 1484-1625 (orient:+) max_ev_support = 1 # spliced_intron 1484-1625 (orient:+) max_ev_support = 1 scaffold_500 + intron 1484-1625 asmbl_46494 scaffold_500 + retained_intron 1484-1625 asmbl_46495 // Retained and Spliced Intron # retained_intron 4922-5037 (orient:+) max_ev_support = 1 # spliced_intron 4922-5037 (orient:+) max_ev_support = 1 scaffold_500 + intron 4922-5037 asmbl_46498 scaffold_500 + retained_intron 4922-5037 asmbl_46497 // Retained and Spliced Intron # retained_intron 2659-3028 (orient:+) max_ev_support = 1 # spliced_intron 2659-3028 (orient:+) max_ev_support = 2 scaffold_506 + intron 2659-3028 asmbl_46501,asmbl_46504 scaffold_506 + retained_intron 2659-3028 asmbl_46502 // Retained and Spliced Intron # retained_intron 2749-3028 (orient:+) max_ev_support = 1 # spliced_intron 2749-3028 (orient:+) max_ev_support = 1 scaffold_506 + intron 2749-3028 asmbl_46503,asmbl_46505 scaffold_506 + retained_intron 2749-3028 asmbl_46502 // Exon Skipping and Retention # skipped_exon 1519-1786 (orient:-) max_ev_support = 1 # retained_exon 1667-1700 (orient:-) max_ev_support = 2 scaffold_52 - retained_exons 1667-1700 asmbl_46521,asmbl_46522 scaffold_52 - intron_skips_exon 1519-1786 asmbl_46525 // Retained and Spliced Intron # retained_intron 1701-1786 (orient:-) max_ev_support = 2 # spliced_intron 1701-1786 (orient:-) max_ev_support = 2 scaffold_52 - intron 1701-1786 asmbl_46521,asmbl_46522 scaffold_52 - retained_intron 1701-1786 asmbl_46523 // Retained and Spliced Intron # retained_intron 6286-6560 (orient:+) max_ev_support = 5 # spliced_intron 6286-6560 (orient:+) max_ev_support = 3 scaffold_52 + intron 6286-6560 asmbl_46528,asmbl_46529 scaffold_52 + retained_intron 6286-6560 asmbl_46527,asmbl_46530 // Retained and Spliced Intron # retained_intron 6626-6929 (orient:+) max_ev_support = 7 # spliced_intron 6626-6929 (orient:+) max_ev_support = 3 scaffold_52 + intron 6626-6929 asmbl_46529,asmbl_46530 scaffold_52 + retained_intron 6626-6929 asmbl_46527,asmbl_46528 // Retained and Spliced Intron # retained_intron 7823-8417 (orient:-) max_ev_support = 4 # spliced_intron 7823-8417 (orient:-) max_ev_support = 2 scaffold_54 - intron 7823-8417 asmbl_46552 scaffold_54 - retained_intron 7823-8417 asmbl_46551 // Retained and Spliced Intron # retained_intron 1774-1827 (orient:+) max_ev_support = 1 # spliced_intron 1774-1827 (orient:+) max_ev_support = 1 scaffold_550 + intron 1774-1827 asmbl_46559,asmbl_46560 scaffold_550 + retained_intron 1774-1827 asmbl_46561,asmbl_46562 // Retained and Spliced Intron # retained_intron 4308-4486 (orient:-) max_ev_support = 1 # spliced_intron 4308-4486 (orient:-) max_ev_support = 1 scaffold_56 - intron 4308-4486 asmbl_46566 scaffold_56 - retained_intron 4308-4486 asmbl_46565 // Retained and Spliced Intron # retained_intron 741-875 (orient:-) max_ev_support = 2 # spliced_intron 741-875 (orient:-) max_ev_support = 1 scaffold_560 - intron 741-875 asmbl_46575 scaffold_560 - retained_intron 741-875 asmbl_46576 // Retained and Spliced Intron # retained_intron 3943-4024 (orient:+) max_ev_support = 1 # spliced_intron 3943-4024 (orient:+) max_ev_support = 1 scaffold_566 + intron 3943-4024 asmbl_46581 scaffold_566 + retained_intron 3943-4024 asmbl_46582 // Retained and Spliced Intron # retained_intron 3943-4175 (orient:+) max_ev_support = 1 # spliced_intron 3943-4175 (orient:+) max_ev_support = 1 scaffold_566 + intron 3943-4175 asmbl_46580 scaffold_566 + retained_intron 3943-4175 asmbl_46582 // Retained and Spliced Intron # retained_intron 22910-23017 (orient:+) max_ev_support = 5 # spliced_intron 22910-23017 (orient:+) max_ev_support = 1 scaffold_58 + intron 22910-23017 asmbl_46609 scaffold_58 + retained_intron 22910-23017 asmbl_46608 // Retained and Spliced Intron # retained_intron 92644-92783 (orient:+) max_ev_support = 3 # spliced_intron 92644-92783 (orient:+) max_ev_support = 3 scaffold_6 + intron 92644-92783 asmbl_46632 scaffold_6 + retained_intron 92644-92783 asmbl_46633 // Retained and Spliced Intron # retained_intron 187725-187786 (orient:+) max_ev_support = 1 # spliced_intron 187725-187786 (orient:+) max_ev_support = 1 scaffold_6 + intron 187725-187786 asmbl_46639 scaffold_6 + retained_intron 187725-187786 asmbl_46638 // Retained and Spliced Intron # retained_intron 187756-187786 (orient:+) max_ev_support = 1 # spliced_intron 187756-187786 (orient:+) max_ev_support = 1 scaffold_6 + intron 187756-187786 asmbl_46637 scaffold_6 + retained_intron 187756-187786 asmbl_46638 // Retained and Spliced Intron # retained_intron 298817-299072 (orient:+) max_ev_support = 3 # spliced_intron 298817-299072 (orient:+) max_ev_support = 3 scaffold_6 + intron 298817-299072 asmbl_46648,asmbl_46649 scaffold_6 + retained_intron 298817-299072 asmbl_46647 // Retained and Spliced Intron # retained_intron 298817-299335 (orient:+) max_ev_support = 3 # spliced_intron 298817-299335 (orient:+) max_ev_support = 3 scaffold_6 + intron 298817-299335 asmbl_46650 scaffold_6 + retained_intron 298817-299335 asmbl_46647 // Retained and Spliced Intron # retained_intron 299110-299335 (orient:+) max_ev_support = 3 # spliced_intron 299110-299335 (orient:+) max_ev_support = 3 scaffold_6 + intron 299110-299335 asmbl_46648 scaffold_6 + retained_intron 299110-299335 asmbl_46647,asmbl_46649 // Exon Skipping and Retention # skipped_exon 298817-299335 (orient:+) max_ev_support = 3 # retained_exon 299073-299109 (orient:+) max_ev_support = 3 scaffold_6 + retained_exons 299073-299109 asmbl_46648 scaffold_6 + intron_skips_exon 298817-299335 asmbl_46650 // Retained and Spliced Intron # retained_intron 300061-300175 (orient:+) max_ev_support = 1 # spliced_intron 300061-300175 (orient:+) max_ev_support = 1 scaffold_6 + intron 300061-300175 asmbl_46647,asmbl_46648,asmbl_46649 scaffold_6 + retained_intron 300061-300175 asmbl_46650 // Retained and Spliced Intron # retained_intron 384396-384552 (orient:+) max_ev_support = 1 # spliced_intron 384396-384552 (orient:+) max_ev_support = 2 scaffold_6 + intron 384396-384552 asmbl_46655 scaffold_6 + retained_intron 384396-384552 asmbl_46656 // Retained and Spliced Intron # retained_intron 573670-573950 (orient:+) max_ev_support = 3 # spliced_intron 573670-573950 (orient:+) max_ev_support = 2 scaffold_6 + intron 573670-573950 asmbl_46666 scaffold_6 + retained_intron 573670-573950 asmbl_46665 // Retained and Spliced Intron # retained_intron 573750-573950 (orient:+) max_ev_support = 3 # spliced_intron 573750-573950 (orient:+) max_ev_support = 2 scaffold_6 + intron 573750-573950 asmbl_46667 scaffold_6 + retained_intron 573750-573950 asmbl_46665 // Exon Skipping and Retention # skipped_exon 878149-878728 (orient:+) max_ev_support = 1 # retained_exon 878681-878698 (orient:+) max_ev_support = 1 scaffold_6 + retained_exons 878681-878698 asmbl_46683 scaffold_6 + intron_skips_exon 878149-878728 asmbl_46684 // Retained and Spliced Intron # retained_intron 1497143-1498676 (orient:+) max_ev_support = 5 # spliced_intron 1497143-1498676 (orient:+) max_ev_support = 2 scaffold_6 + intron 1497143-1498676 asmbl_46710 scaffold_6 + retained_intron 1497143-1498676 asmbl_46708 // Retained and Spliced Intron # retained_intron 1498115-1498676 (orient:+) max_ev_support = 3 # spliced_intron 1498115-1498676 (orient:+) max_ev_support = 1 scaffold_6 + intron 1498115-1498676 asmbl_46709 scaffold_6 + retained_intron 1498115-1498676 asmbl_46708 // Retained and Spliced Intron # retained_intron 1550441-1550570 (orient:+) max_ev_support = 3 # spliced_intron 1550441-1550570 (orient:+) max_ev_support = 3 scaffold_6 + intron 1550441-1550570 asmbl_46718 scaffold_6 + retained_intron 1550441-1550570 asmbl_46717 // Retained and Spliced Intron # retained_intron 1585415-1585461 (orient:+) max_ev_support = 3 # spliced_intron 1585415-1585461 (orient:+) max_ev_support = 1 scaffold_6 + intron 1585415-1585461 asmbl_46721 scaffold_6 + retained_intron 1585415-1585461 asmbl_46722 // Retained and Spliced Intron # retained_intron 1584416-1584521 (orient:+) max_ev_support = 1 # spliced_intron 1584416-1584521 (orient:+) max_ev_support = 1 scaffold_6 + intron 1584416-1584521 asmbl_46721 scaffold_6 + retained_intron 1584416-1584521 asmbl_46723 // Exon Skipping and Retention # skipped_exon 2484045-2485297 (orient:+) max_ev_support = 1 # retained_exon 2484402-2484433 (orient:+) max_ev_support = 1 scaffold_6 + retained_exons 2484402-2484433 asmbl_46754,asmbl_46755,asmbl_46759 scaffold_6 + intron_skips_exon 2484045-2485297 asmbl_46753,asmbl_46756,asmbl_46758 // Retained and Spliced Intron # retained_intron 2487326-2487373 (orient:+) max_ev_support = 1 # spliced_intron 2487326-2487373 (orient:+) max_ev_support = 2 scaffold_6 + intron 2487326-2487373 asmbl_46753,asmbl_46754 scaffold_6 + retained_intron 2487326-2487373 asmbl_46755,asmbl_46756,asmbl_46758,asmbl_46759 // Retained and Spliced Intron # retained_intron 2909054-2909178 (orient:+) max_ev_support = 2 # spliced_intron 2909054-2909178 (orient:+) max_ev_support = 3 scaffold_6 + intron 2909054-2909178 asmbl_46785,asmbl_46789,asmbl_46790 scaffold_6 + retained_intron 2909054-2909178 asmbl_46788 // Retained and Spliced Intron # retained_intron 2909228-2909325 (orient:+) max_ev_support = 2 # spliced_intron 2909228-2909325 (orient:+) max_ev_support = 3 scaffold_6 + intron 2909228-2909325 asmbl_46785,asmbl_46789,asmbl_46790 scaffold_6 + retained_intron 2909228-2909325 asmbl_46788 // Retained and Spliced Intron # retained_intron 2908621-2908725 (orient:+) max_ev_support = 1 # spliced_intron 2908621-2908725 (orient:+) max_ev_support = 3 scaffold_6 + intron 2908621-2908725 asmbl_46785,asmbl_46789 scaffold_6 + retained_intron 2908621-2908725 asmbl_46790 // Exon Skipping and Retention # skipped_exon 3028736-3031447 (orient:+) max_ev_support = 2 # retained_exon 3030026-3030054 (orient:+) max_ev_support = 2 scaffold_6 + retained_exons 3030026-3030054 asmbl_46793 scaffold_6 + intron_skips_exon 3028736-3031447 asmbl_46794 // Retained and Spliced Intron # retained_intron 3052979-3053100 (orient:+) max_ev_support = 2 # spliced_intron 3052979-3053100 (orient:+) max_ev_support = 1 scaffold_6 + intron 3052979-3053100 asmbl_46804 scaffold_6 + retained_intron 3052979-3053100 asmbl_46799 // Retained and Spliced Intron # retained_intron 3055244-3055748 (orient:+) max_ev_support = 2 # spliced_intron 3055244-3055748 (orient:+) max_ev_support = 2 scaffold_6 + intron 3055244-3055748 asmbl_46801,asmbl_46805 scaffold_6 + retained_intron 3055244-3055748 asmbl_46800,asmbl_46806 // Retained and Spliced Intron # retained_intron 3056262-3056806 (orient:+) max_ev_support = 1 # spliced_intron 3056262-3056806 (orient:+) max_ev_support = 2 scaffold_6 + intron 3056262-3056806 asmbl_46798,asmbl_46800,asmbl_46801,asmbl_46803,asmbl_46805,asmbl_46806 scaffold_6 + retained_intron 3056262-3056806 asmbl_46802 // Retained and Spliced Intron # retained_intron 3056924-3057109 (orient:+) max_ev_support = 1 # spliced_intron 3056924-3057109 (orient:+) max_ev_support = 2 scaffold_6 + intron 3056924-3057109 asmbl_46798,asmbl_46800,asmbl_46801,asmbl_46803,asmbl_46805,asmbl_46806 scaffold_6 + retained_intron 3056924-3057109 asmbl_46802 // Retained and Spliced Intron # retained_intron 3057498-3057599 (orient:+) max_ev_support = 1 # spliced_intron 3057498-3057599 (orient:+) max_ev_support = 2 scaffold_6 + intron 3057498-3057599 asmbl_46798,asmbl_46800,asmbl_46801,asmbl_46803,asmbl_46805,asmbl_46806 scaffold_6 + retained_intron 3057498-3057599 asmbl_46802 // Retained and Spliced Intron # retained_intron 3057252-3057331 (orient:+) max_ev_support = 1 # spliced_intron 3057252-3057331 (orient:+) max_ev_support = 2 scaffold_6 + intron 3057252-3057331 asmbl_46798,asmbl_46800,asmbl_46801,asmbl_46802 scaffold_6 + retained_intron 3057252-3057331 asmbl_46803,asmbl_46805,asmbl_46806 // Retained and Spliced Intron # retained_intron 3065689-3066024 (orient:+) max_ev_support = 2 # spliced_intron 3065689-3066024 (orient:+) max_ev_support = 2 scaffold_6 + intron 3065689-3066024 asmbl_46809,asmbl_46810 scaffold_6 + retained_intron 3065689-3066024 asmbl_46808 // Retained and Spliced Intron # retained_intron 3291018-3291248 (orient:+) max_ev_support = 2 # spliced_intron 3291018-3291248 (orient:+) max_ev_support = 2 scaffold_6 + intron 3291018-3291248 asmbl_46825,asmbl_46827,asmbl_46828 scaffold_6 + retained_intron 3291018-3291248 asmbl_46826 // Retained and Spliced Intron # retained_intron 3292218-3292322 (orient:+) max_ev_support = 1 # spliced_intron 3292218-3292322 (orient:+) max_ev_support = 2 scaffold_6 + intron 3292218-3292322 asmbl_46825 scaffold_6 + retained_intron 3292218-3292322 asmbl_46827 // Retained and Spliced Intron # retained_intron 3778396-3778632 (orient:+) max_ev_support = 3 # spliced_intron 3778396-3778632 (orient:+) max_ev_support = 3 scaffold_6 + intron 3778396-3778632 asmbl_46851,asmbl_46853 scaffold_6 + retained_intron 3778396-3778632 asmbl_46852,asmbl_46854,asmbl_46855 // Retained and Spliced Intron # retained_intron 3778731-3778944 (orient:+) max_ev_support = 3 # spliced_intron 3778731-3778944 (orient:+) max_ev_support = 3 scaffold_6 + intron 3778731-3778944 asmbl_46851,asmbl_46855 scaffold_6 + retained_intron 3778731-3778944 asmbl_46852,asmbl_46853,asmbl_46854 // Retained and Spliced Intron # retained_intron 3779018-3779105 (orient:+) max_ev_support = 3 # spliced_intron 3779018-3779105 (orient:+) max_ev_support = 3 scaffold_6 + intron 3779018-3779105 asmbl_46851,asmbl_46854,asmbl_46855 scaffold_6 + retained_intron 3779018-3779105 asmbl_46852 // Retained and Spliced Intron # retained_intron 3799951-3800050 (orient:+) max_ev_support = 1 # spliced_intron 3799951-3800050 (orient:+) max_ev_support = 2 scaffold_6 + intron 3799951-3800050 asmbl_46858,asmbl_46859 scaffold_6 + retained_intron 3799951-3800050 asmbl_46860 // Exon Skipping and Retention # skipped_exon 3807411-3808938 (orient:+) max_ev_support = 2 # retained_exon 3808346-3808417 (orient:+) max_ev_support = 1 scaffold_6 + retained_exons 3808346-3808417 asmbl_46861,asmbl_46863 scaffold_6 + intron_skips_exon 3807411-3808938 asmbl_46862,asmbl_46866 // Retained and Spliced Intron # retained_intron 3805997-3806086 (orient:+) max_ev_support = 2 # spliced_intron 3805997-3806086 (orient:+) max_ev_support = 2 scaffold_6 + intron 3805997-3806086 asmbl_46865 scaffold_6 + retained_intron 3805997-3806086 asmbl_46864,asmbl_46867,asmbl_46868 // Retained and Spliced Intron # retained_intron 4319469-4319899 (orient:+) max_ev_support = 2 # spliced_intron 4319469-4319899 (orient:+) max_ev_support = 1 scaffold_6 + intron 4319469-4319899 asmbl_46878 scaffold_6 + retained_intron 4319469-4319899 asmbl_46877,asmbl_46879,asmbl_46881,asmbl_46882 // Retained and Spliced Intron # retained_intron 4319469-4320281 (orient:+) max_ev_support = 2 # spliced_intron 4319469-4320281 (orient:+) max_ev_support = 2 scaffold_6 + intron 4319469-4320281 asmbl_46880 scaffold_6 + retained_intron 4319469-4320281 asmbl_46877,asmbl_46879,asmbl_46882 // Retained and Spliced Intron # retained_intron 4320004-4320281 (orient:+) max_ev_support = 2 # spliced_intron 4320004-4320281 (orient:+) max_ev_support = 1 scaffold_6 + intron 4320004-4320281 asmbl_46878,asmbl_46881 scaffold_6 + retained_intron 4320004-4320281 asmbl_46877,asmbl_46879,asmbl_46882 // Retained and Spliced Intron # retained_intron 4316646-4317616 (orient:+) max_ev_support = 3 # spliced_intron 4316646-4317616 (orient:+) max_ev_support = 2 scaffold_6 + intron 4316646-4317616 asmbl_46879,asmbl_46880,asmbl_46881 scaffold_6 + retained_intron 4316646-4317616 asmbl_46878 // Exon Skipping and Retention # skipped_exon 4319469-4320281 (orient:+) max_ev_support = 2 # retained_exon 4319900-4320003 (orient:+) max_ev_support = 1 scaffold_6 + retained_exons 4319900-4320003 asmbl_46878 scaffold_6 + intron_skips_exon 4319469-4320281 asmbl_46880 // Retained and Spliced Intron # retained_intron 4713791-4713882 (orient:+) max_ev_support = 3 # spliced_intron 4713791-4713882 (orient:+) max_ev_support = 3 scaffold_6 + intron 4713791-4713882 asmbl_46898 scaffold_6 + retained_intron 4713791-4713882 asmbl_46897,asmbl_46899 // Exon Skipping and Retention # skipped_exon 4997185-4999978 (orient:+) max_ev_support = 2 # retained_exon 4999173-4999190 (orient:+) max_ev_support = 1 scaffold_6 + retained_exons 4999173-4999190 asmbl_46905 scaffold_6 + intron_skips_exon 4997185-4999978 asmbl_46904 // Retained and Spliced Intron # retained_intron 5002265-5002285 (orient:+) max_ev_support = 1 # spliced_intron 5002265-5002285 (orient:+) max_ev_support = 1 scaffold_6 + intron 5002265-5002285 asmbl_46904 scaffold_6 + retained_intron 5002265-5002285 asmbl_46906 // Retained and Spliced Intron # retained_intron 5198065-5198348 (orient:+) max_ev_support = 3 # spliced_intron 5198065-5198348 (orient:+) max_ev_support = 3 scaffold_6 + intron 5198065-5198348 asmbl_46916,asmbl_46917,asmbl_46920,asmbl_46921,asmbl_46923,asmbl_46924,asmbl_46926 scaffold_6 + retained_intron 5198065-5198348 asmbl_46918,asmbl_46925 // Retained and Spliced Intron # retained_intron 5197857-5197979 (orient:+) max_ev_support = 2 # spliced_intron 5197857-5197979 (orient:+) max_ev_support = 3 scaffold_6 + intron 5197857-5197979 asmbl_46916,asmbl_46917,asmbl_46918,asmbl_46920,asmbl_46921,asmbl_46924 scaffold_6 + retained_intron 5197857-5197979 asmbl_46919,asmbl_46923,asmbl_46925,asmbl_46926 // Retained and Spliced Intron # retained_intron 5265077-5265171 (orient:+) max_ev_support = 2 # spliced_intron 5265077-5265171 (orient:+) max_ev_support = 2 scaffold_6 + intron 5265077-5265171 asmbl_46936 scaffold_6 + retained_intron 5265077-5265171 asmbl_46937 // Retained and Spliced Intron # retained_intron 5753989-5754213 (orient:+) max_ev_support = 1 # spliced_intron 5753989-5754213 (orient:+) max_ev_support = 2 scaffold_6 + intron 5753989-5754213 asmbl_46973,asmbl_46976,asmbl_46978 scaffold_6 + retained_intron 5753989-5754213 asmbl_46974,asmbl_46975,asmbl_46977 // Retained and Spliced Intron # retained_intron 5752193-5752361 (orient:+) max_ev_support = 1 # spliced_intron 5752193-5752361 (orient:+) max_ev_support = 2 scaffold_6 + intron 5752193-5752361 asmbl_46973,asmbl_46974 scaffold_6 + retained_intron 5752193-5752361 asmbl_46975,asmbl_46976 // Retained and Spliced Intron # retained_intron 5752485-5752688 (orient:+) max_ev_support = 1 # spliced_intron 5752485-5752688 (orient:+) max_ev_support = 2 scaffold_6 + intron 5752485-5752688 asmbl_46973,asmbl_46974,asmbl_46976 scaffold_6 + retained_intron 5752485-5752688 asmbl_46975 // Retained and Spliced Intron # retained_intron 5752777-5753623 (orient:+) max_ev_support = 1 # spliced_intron 5752777-5753623 (orient:+) max_ev_support = 2 scaffold_6 + intron 5752777-5753623 asmbl_46973,asmbl_46974,asmbl_46976,asmbl_46977,asmbl_46978 scaffold_6 + retained_intron 5752777-5753623 asmbl_46975 // Retained and Spliced Intron # retained_intron 5753701-5753903 (orient:+) max_ev_support = 1 # spliced_intron 5753701-5753903 (orient:+) max_ev_support = 2 scaffold_6 + intron 5753701-5753903 asmbl_46973,asmbl_46974,asmbl_46976,asmbl_46978 scaffold_6 + retained_intron 5753701-5753903 asmbl_46975,asmbl_46977 // Retained and Spliced Intron # retained_intron 5930657-5931098 (orient:+) max_ev_support = 1 # spliced_intron 5930657-5931098 (orient:+) max_ev_support = 2 scaffold_6 + intron 5930657-5931098 asmbl_46982 scaffold_6 + retained_intron 5930657-5931098 asmbl_46985,asmbl_46986 // Retained and Spliced Intron # retained_intron 6869228-6869357 (orient:+) max_ev_support = 2 # spliced_intron 6869228-6869357 (orient:+) max_ev_support = 2 scaffold_6 + intron 6869228-6869357 asmbl_47012 scaffold_6 + retained_intron 6869228-6869357 asmbl_47010,asmbl_47011,asmbl_47014 // Retained and Spliced Intron # retained_intron 6869240-6869357 (orient:+) max_ev_support = 2 # spliced_intron 6869240-6869357 (orient:+) max_ev_support = 1 scaffold_6 + intron 6869240-6869357 asmbl_47015 scaffold_6 + retained_intron 6869240-6869357 asmbl_47010,asmbl_47011,asmbl_47014 // Retained and Spliced Intron # retained_intron 7169018-7171242 (orient:+) max_ev_support = 2 # spliced_intron 7169018-7171242 (orient:+) max_ev_support = 1 scaffold_6 + intron 7169018-7171242 asmbl_47052 scaffold_6 + retained_intron 7169018-7171242 asmbl_47050,asmbl_47053,asmbl_47055 // Retained and Spliced Intron # retained_intron 7170247-7171242 (orient:+) max_ev_support = 2 # spliced_intron 7170247-7171242 (orient:+) max_ev_support = 1 scaffold_6 + intron 7170247-7171242 asmbl_47054 scaffold_6 + retained_intron 7170247-7171242 asmbl_47050,asmbl_47053,asmbl_47055 // Retained and Spliced Intron # retained_intron 7171271-7171397 (orient:+) max_ev_support = 2 # spliced_intron 7171271-7171397 (orient:+) max_ev_support = 1 scaffold_6 + intron 7171271-7171397 asmbl_47052,asmbl_47055 scaffold_6 + retained_intron 7171271-7171397 asmbl_47050,asmbl_47053,asmbl_47054 // Retained and Spliced Intron # retained_intron 7173476-7173600 (orient:+) max_ev_support = 1 # spliced_intron 7173476-7173600 (orient:+) max_ev_support = 1 scaffold_6 + intron 7173476-7173600 asmbl_47052,asmbl_47053,asmbl_47055,asmbl_47056,asmbl_47058 scaffold_6 + retained_intron 7173476-7173600 asmbl_47057 // Retained and Spliced Intron # retained_intron 7173679-7173782 (orient:+) max_ev_support = 1 # spliced_intron 7173679-7173782 (orient:+) max_ev_support = 1 scaffold_6 + intron 7173679-7173782 asmbl_47052,asmbl_47053,asmbl_47055,asmbl_47056,asmbl_47057,asmbl_47058 scaffold_6 + retained_intron 7173679-7173782 asmbl_47059 // Retained and Spliced Intron # retained_intron 7173897-7174059 (orient:+) max_ev_support = 1 # spliced_intron 7173897-7174059 (orient:+) max_ev_support = 1 scaffold_6 + intron 7173897-7174059 asmbl_47052,asmbl_47053,asmbl_47055,asmbl_47056,asmbl_47057,asmbl_47058,asmbl_47059 scaffold_6 + retained_intron 7173897-7174059 asmbl_47060 // Retained and Spliced Intron # retained_intron 7174170-7174368 (orient:+) max_ev_support = 1 # spliced_intron 7174170-7174368 (orient:+) max_ev_support = 1 scaffold_6 + intron 7174170-7174368 asmbl_47052,asmbl_47053,asmbl_47055,asmbl_47056,asmbl_47057,asmbl_47058,asmbl_47059 scaffold_6 + retained_intron 7174170-7174368 asmbl_47060 // Retained and Spliced Intron # retained_intron 7174460-7174541 (orient:+) max_ev_support = 1 # spliced_intron 7174460-7174541 (orient:+) max_ev_support = 1 scaffold_6 + intron 7174460-7174541 asmbl_47052,asmbl_47053,asmbl_47055,asmbl_47056,asmbl_47057,asmbl_47058,asmbl_47059 scaffold_6 + retained_intron 7174460-7174541 asmbl_47060 // Retained and Spliced Intron # retained_intron 8460271-8460401 (orient:+) max_ev_support = 2 # spliced_intron 8460271-8460401 (orient:+) max_ev_support = 2 scaffold_6 + intron 8460271-8460401 asmbl_47127 scaffold_6 + retained_intron 8460271-8460401 asmbl_47126,asmbl_47129 // Retained and Spliced Intron # retained_intron 8460271-8460406 (orient:+) max_ev_support = 2 # spliced_intron 8460271-8460406 (orient:+) max_ev_support = 1 scaffold_6 + intron 8460271-8460406 asmbl_47128 scaffold_6 + retained_intron 8460271-8460406 asmbl_47126,asmbl_47129 // Retained and Spliced Intron # retained_intron 8460449-8460563 (orient:+) max_ev_support = 2 # spliced_intron 8460449-8460563 (orient:+) max_ev_support = 2 scaffold_6 + intron 8460449-8460563 asmbl_47127,asmbl_47128,asmbl_47129 scaffold_6 + retained_intron 8460449-8460563 asmbl_47126 // Retained and Spliced Intron # retained_intron 8460732-8460860 (orient:+) max_ev_support = 1 # spliced_intron 8460732-8460860 (orient:+) max_ev_support = 2 scaffold_6 + intron 8460732-8460860 asmbl_47126,asmbl_47127,asmbl_47128,asmbl_47129 scaffold_6 + retained_intron 8460732-8460860 asmbl_47130 // Retained and Spliced Intron # retained_intron 8580963-8581085 (orient:+) max_ev_support = 1 # spliced_intron 8580963-8581085 (orient:+) max_ev_support = 1 scaffold_6 + intron 8580963-8581085 asmbl_47152,asmbl_47153 scaffold_6 + retained_intron 8580963-8581085 asmbl_47150,asmbl_47151,asmbl_47154 // Retained and Spliced Intron # retained_intron 8582069-8582179 (orient:+) max_ev_support = 1 # spliced_intron 8582069-8582179 (orient:+) max_ev_support = 1 scaffold_6 + intron 8582069-8582179 asmbl_47155,asmbl_47156 scaffold_6 + retained_intron 8582069-8582179 asmbl_47152,asmbl_47153 // Retained and Spliced Intron # retained_intron 8581465-8581566 (orient:+) max_ev_support = 1 # spliced_intron 8581465-8581566 (orient:+) max_ev_support = 1 scaffold_6 + intron 8581465-8581566 asmbl_47156 scaffold_6 + retained_intron 8581465-8581566 asmbl_47153,asmbl_47155 // Retained and Spliced Intron # retained_intron 8581614-8581696 (orient:+) max_ev_support = 1 # spliced_intron 8581614-8581696 (orient:+) max_ev_support = 1 scaffold_6 + intron 8581614-8581696 asmbl_47152,asmbl_47156 scaffold_6 + retained_intron 8581614-8581696 asmbl_47153,asmbl_47155 // Retained and Spliced Intron # retained_intron 8579544-8579666 (orient:+) max_ev_support = 1 # spliced_intron 8579544-8579666 (orient:+) max_ev_support = 1 scaffold_6 + intron 8579544-8579666 asmbl_47150,asmbl_47151,asmbl_47152,asmbl_47153 scaffold_6 + retained_intron 8579544-8579666 asmbl_47154 // Exon Skipping and Retention # skipped_exon 8586032-8587723 (orient:+) max_ev_support = 1 # retained_exon 8586962-8587596 (orient:+) max_ev_support = 2 scaffold_6 + retained_exons 8586962-8587103,8587286-8587392,8587498-8587596 asmbl_47158,asmbl_47159 scaffold_6 + intron_skips_exon 8586032-8587723 asmbl_47163 // Retained and Spliced Intron # retained_intron 8643223-8643316 (orient:+) max_ev_support = 1 # spliced_intron 8643223-8643316 (orient:+) max_ev_support = 1 scaffold_6 + intron 8643223-8643316 asmbl_47170,asmbl_47171,asmbl_47172 scaffold_6 + retained_intron 8643223-8643316 asmbl_47169 // Retained and Spliced Intron # retained_intron 8643223-8643354 (orient:+) max_ev_support = 1 # spliced_intron 8643223-8643354 (orient:+) max_ev_support = 2 scaffold_6 + intron 8643223-8643354 asmbl_47168 scaffold_6 + retained_intron 8643223-8643354 asmbl_47169 // Retained and Spliced Intron # retained_intron 9012696-9012818 (orient:+) max_ev_support = 2 # spliced_intron 9012696-9012818 (orient:+) max_ev_support = 2 scaffold_6 + intron 9012696-9012818 asmbl_47193 scaffold_6 + retained_intron 9012696-9012818 asmbl_47192 // Retained and Spliced Intron # retained_intron 9093568-9093795 (orient:+) max_ev_support = 1 # spliced_intron 9093568-9093795 (orient:+) max_ev_support = 2 scaffold_6 + intron 9093568-9093795 asmbl_47202,asmbl_47204 scaffold_6 + retained_intron 9093568-9093795 asmbl_47205 // Exon Skipping and Retention # skipped_exon 9134833-9135545 (orient:+) max_ev_support = 1 # retained_exon 9134985-9135029 (orient:+) max_ev_support = 2 scaffold_6 + retained_exons 9134985-9135029 asmbl_47208,asmbl_47209,asmbl_47212 scaffold_6 + intron_skips_exon 9134833-9135545 asmbl_47213,asmbl_47217,asmbl_47218,asmbl_47219,asmbl_47220,asmbl_47221,asmbl_47222 // Exon Skipping and Retention # skipped_exon 9131836-9134144 (orient:+) max_ev_support = 1 # retained_exon 9132526-9132633 (orient:+) max_ev_support = 1 scaffold_6 + retained_exons 9132526-9132633 asmbl_47212,asmbl_47213,asmbl_47220,asmbl_47222 scaffold_6 + intron_skips_exon 9131836-9134144 asmbl_47209,asmbl_47219,asmbl_47221 // Retained and Spliced Intron # retained_intron 9170836-9170927 (orient:+) max_ev_support = 2 # spliced_intron 9170836-9170927 (orient:+) max_ev_support = 3 scaffold_6 + intron 9170836-9170927 asmbl_47225 scaffold_6 + retained_intron 9170836-9170927 asmbl_47226 // Retained and Spliced Intron # retained_intron 9585597-9585676 (orient:+) max_ev_support = 2 # spliced_intron 9585597-9585676 (orient:+) max_ev_support = 2 scaffold_6 + intron 9585597-9585676 asmbl_47231 scaffold_6 + retained_intron 9585597-9585676 asmbl_47232 // Retained and Spliced Intron # retained_intron 9585760-9586086 (orient:+) max_ev_support = 2 # spliced_intron 9585760-9586086 (orient:+) max_ev_support = 2 scaffold_6 + intron 9585760-9586086 asmbl_47231 scaffold_6 + retained_intron 9585760-9586086 asmbl_47232 // Exon Skipping and Retention # skipped_exon 9909894-9911434 (orient:+) max_ev_support = 1 # retained_exon 9910384-9910437 (orient:+) max_ev_support = 1 scaffold_6 + retained_exons 9910384-9910437 asmbl_47248 scaffold_6 + intron_skips_exon 9909894-9911434 asmbl_47249 // Retained and Spliced Intron # retained_intron 9909894-9910383 (orient:+) max_ev_support = 3 # spliced_intron 9909894-9910383 (orient:+) max_ev_support = 1 scaffold_6 + intron 9909894-9910383 asmbl_47248 scaffold_6 + retained_intron 9909894-9910383 asmbl_47250 // Exon Skipping and Retention # skipped_exon 9956533-9958195 (orient:+) max_ev_support = 2 # retained_exon 9956826-9957719 (orient:+) max_ev_support = 2 scaffold_6 + retained_exons 9956826-9956960,9957594-9957719 asmbl_47254 scaffold_6 + intron_skips_exon 9956533-9958195 asmbl_47255 // Retained and Spliced Intron # retained_intron 10231662-10231807 (orient:+) max_ev_support = 2 # spliced_intron 10231662-10231807 (orient:+) max_ev_support = 1 scaffold_6 + intron 10231662-10231807 asmbl_47275 scaffold_6 + retained_intron 10231662-10231807 asmbl_47274 // Retained and Spliced Intron # retained_intron 10393410-10393501 (orient:+) max_ev_support = 1 # spliced_intron 10393410-10393501 (orient:+) max_ev_support = 2 scaffold_6 + intron 10393410-10393501 asmbl_47282 scaffold_6 + retained_intron 10393410-10393501 asmbl_47283 // Retained and Spliced Intron # retained_intron 10546689-10547006 (orient:+) max_ev_support = 2 # spliced_intron 10546689-10547006 (orient:+) max_ev_support = 2 scaffold_6 + intron 10546689-10547006 asmbl_47288 scaffold_6 + retained_intron 10546689-10547006 asmbl_47287 // Retained and Spliced Intron # retained_intron 10718997-10719099 (orient:+) max_ev_support = 2 # spliced_intron 10718997-10719099 (orient:+) max_ev_support = 2 scaffold_6 + intron 10718997-10719099 asmbl_47291 scaffold_6 + retained_intron 10718997-10719099 asmbl_47289,asmbl_47290 // Retained and Spliced Intron # retained_intron 10724279-10724368 (orient:+) max_ev_support = 2 # spliced_intron 10724279-10724368 (orient:+) max_ev_support = 2 scaffold_6 + intron 10724279-10724368 asmbl_47290,asmbl_47291 scaffold_6 + retained_intron 10724279-10724368 asmbl_47289 // Exon Skipping and Retention # skipped_exon 10894193-10895417 (orient:+) max_ev_support = 2 # retained_exon 10895155-10895251 (orient:+) max_ev_support = 2 scaffold_6 + retained_exons 10895155-10895251 asmbl_47303,asmbl_47304 scaffold_6 + intron_skips_exon 10894193-10895417 asmbl_47305 // Retained and Spliced Intron # retained_intron 10898864-10899075 (orient:+) max_ev_support = 3 # spliced_intron 10898864-10899075 (orient:+) max_ev_support = 2 scaffold_6 + intron 10898864-10899075 asmbl_47304,asmbl_47305,asmbl_47308 scaffold_6 + retained_intron 10898864-10899075 asmbl_47303 // Retained and Spliced Intron # retained_intron 10897965-10898174 (orient:+) max_ev_support = 2 # spliced_intron 10897965-10898174 (orient:+) max_ev_support = 2 scaffold_6 + intron 10897965-10898174 asmbl_47303,asmbl_47304,asmbl_47305 scaffold_6 + retained_intron 10897965-10898174 asmbl_47307 // Retained and Spliced Intron # retained_intron 10916944-10917091 (orient:+) max_ev_support = 1 # spliced_intron 10916944-10917091 (orient:+) max_ev_support = 2 scaffold_6 + intron 10916944-10917091 asmbl_47310,asmbl_47312 scaffold_6 + retained_intron 10916944-10917091 asmbl_47311 // Retained and Spliced Intron # retained_intron 10916682-10916800 (orient:+) max_ev_support = 2 # spliced_intron 10916682-10916800 (orient:+) max_ev_support = 2 scaffold_6 + intron 10916682-10916800 asmbl_47310,asmbl_47311 scaffold_6 + retained_intron 10916682-10916800 asmbl_47313 // Retained and Spliced Intron # retained_intron 11489986-11490454 (orient:+) max_ev_support = 2 # spliced_intron 11489986-11490454 (orient:+) max_ev_support = 1 scaffold_6 + intron 11489986-11490454 asmbl_47331,asmbl_47332,asmbl_47333 scaffold_6 + retained_intron 11489986-11490454 asmbl_47326,asmbl_47327,asmbl_47330,asmbl_47334,asmbl_47335 // Retained and Spliced Intron # retained_intron 11482302-11482747 (orient:+) max_ev_support = 2 # spliced_intron 11482302-11482747 (orient:+) max_ev_support = 1 scaffold_6 + intron 11482302-11482747 asmbl_47333 scaffold_6 + retained_intron 11482302-11482747 asmbl_47327 // Exon Skipping and Retention # skipped_exon 11482302-11482900 (orient:+) max_ev_support = 2 # retained_exon 11482748-11482799 (orient:+) max_ev_support = 1 scaffold_6 + retained_exons 11482748-11482799 asmbl_47333 scaffold_6 + intron_skips_exon 11482302-11482900 asmbl_47326,asmbl_47331 // Exon Skipping and Retention # skipped_exon 11482302-11482860 (orient:+) max_ev_support = 1 # retained_exon 11482748-11482799 (orient:+) max_ev_support = 1 scaffold_6 + retained_exons 11482748-11482799 asmbl_47333 scaffold_6 + intron_skips_exon 11482302-11482860 asmbl_47330,asmbl_47332 // Retained and Spliced Intron # retained_intron 11499265-11499368 (orient:+) max_ev_support = 2 # spliced_intron 11499265-11499368 (orient:+) max_ev_support = 3 scaffold_6 + intron 11499265-11499368 asmbl_47336 scaffold_6 + retained_intron 11499265-11499368 asmbl_47337 // Retained and Spliced Intron # retained_intron 11668222-11668463 (orient:+) max_ev_support = 2 # spliced_intron 11668222-11668463 (orient:+) max_ev_support = 1 scaffold_6 + intron 11668222-11668463 asmbl_47357 scaffold_6 + retained_intron 11668222-11668463 asmbl_47356 // Retained and Spliced Intron # retained_intron 11668222-11669586 (orient:+) max_ev_support = 2 # spliced_intron 11668222-11669586 (orient:+) max_ev_support = 3 scaffold_6 + intron 11668222-11669586 asmbl_47355 scaffold_6 + retained_intron 11668222-11669586 asmbl_47356 // Retained and Spliced Intron # retained_intron 11668496-11669586 (orient:+) max_ev_support = 2 # spliced_intron 11668496-11669586 (orient:+) max_ev_support = 1 scaffold_6 + intron 11668496-11669586 asmbl_47357 scaffold_6 + retained_intron 11668496-11669586 asmbl_47356 // Exon Skipping and Retention # skipped_exon 11668222-11669586 (orient:+) max_ev_support = 3 # retained_exon 11668464-11668495 (orient:+) max_ev_support = 1 scaffold_6 + retained_exons 11668464-11668495 asmbl_47357 scaffold_6 + intron_skips_exon 11668222-11669586 asmbl_47355 // Exon Skipping and Retention # skipped_exon 12116976-12117548 (orient:+) max_ev_support = 2 # retained_exon 12117070-12117099 (orient:+) max_ev_support = 3 scaffold_6 + retained_exons 12117070-12117099 asmbl_47373 scaffold_6 + intron_skips_exon 12116976-12117548 asmbl_47376 // Retained and Spliced Intron # retained_intron 12116976-12117069 (orient:+) max_ev_support = 3 # spliced_intron 12116976-12117069 (orient:+) max_ev_support = 3 scaffold_6 + intron 12116976-12117069 asmbl_47373 scaffold_6 + retained_intron 12116976-12117069 asmbl_47374 // Exon Skipping and Retention # skipped_exon 12477780-12479147 (orient:+) max_ev_support = 1 # retained_exon 12478001-12478109 (orient:+) max_ev_support = 2 scaffold_6 + retained_exons 12478001-12478109 asmbl_47397,asmbl_47398,asmbl_47399,asmbl_47400,asmbl_47403 scaffold_6 + intron_skips_exon 12477780-12479147 asmbl_47401,asmbl_47402 // Retained and Spliced Intron # retained_intron 12480315-12482223 (orient:+) max_ev_support = 5 # spliced_intron 12480315-12482223 (orient:+) max_ev_support = 2 scaffold_6 + intron 12480315-12482223 asmbl_47398,asmbl_47399,asmbl_47401,asmbl_47402,asmbl_47403 scaffold_6 + retained_intron 12480315-12482223 asmbl_47397 // Retained and Spliced Intron # retained_intron 12479552-12479961 (orient:+) max_ev_support = 2 # spliced_intron 12479552-12479961 (orient:+) max_ev_support = 1 scaffold_6 + intron 12479552-12479961 asmbl_47400,asmbl_47403 scaffold_6 + retained_intron 12479552-12479961 asmbl_47399,asmbl_47401 // Retained and Spliced Intron # retained_intron 12479611-12479961 (orient:+) max_ev_support = 2 # spliced_intron 12479611-12479961 (orient:+) max_ev_support = 2 scaffold_6 + intron 12479611-12479961 asmbl_47397,asmbl_47398,asmbl_47402 scaffold_6 + retained_intron 12479611-12479961 asmbl_47399,asmbl_47401 // Retained and Spliced Intron # retained_intron 12484088-12484230 (orient:+) max_ev_support = 3 # spliced_intron 12484088-12484230 (orient:+) max_ev_support = 3 scaffold_6 + intron 12484088-12484230 asmbl_47404,asmbl_47406 scaffold_6 + retained_intron 12484088-12484230 asmbl_47405,asmbl_47407 // Retained and Spliced Intron # retained_intron 12484297-12484381 (orient:+) max_ev_support = 3 # spliced_intron 12484297-12484381 (orient:+) max_ev_support = 3 scaffold_6 + intron 12484297-12484381 asmbl_47404,asmbl_47407 scaffold_6 + retained_intron 12484297-12484381 asmbl_47405,asmbl_47406 // Retained and Spliced Intron # retained_intron 12653940-12654089 (orient:+) max_ev_support = 2 # spliced_intron 12653940-12654089 (orient:+) max_ev_support = 2 scaffold_6 + intron 12653940-12654089 asmbl_47429 scaffold_6 + retained_intron 12653940-12654089 asmbl_47430,asmbl_47431 // Retained and Spliced Intron # retained_intron 12653940-12654092 (orient:+) max_ev_support = 2 # spliced_intron 12653940-12654092 (orient:+) max_ev_support = 1 scaffold_6 + intron 12653940-12654092 asmbl_47433 scaffold_6 + retained_intron 12653940-12654092 asmbl_47430,asmbl_47431 // Exon Skipping and Retention # skipped_exon 12900264-12901388 (orient:+) max_ev_support = 1 # retained_exon 12900357-12900510 (orient:+) max_ev_support = 2 scaffold_6 + retained_exons 12900357-12900510 asmbl_47442,asmbl_47444 scaffold_6 + intron_skips_exon 12900264-12901388 asmbl_47443 // Retained and Spliced Intron # retained_intron 12911385-12911667 (orient:+) max_ev_support = 5 # spliced_intron 12911385-12911667 (orient:+) max_ev_support = 2 scaffold_6 + intron 12911385-12911667 asmbl_47447 scaffold_6 + retained_intron 12911385-12911667 asmbl_47446 // Retained and Spliced Intron # retained_intron 12937728-12937921 (orient:+) max_ev_support = 2 # spliced_intron 12937728-12937921 (orient:+) max_ev_support = 3 scaffold_6 + intron 12937728-12937921 asmbl_47456 scaffold_6 + retained_intron 12937728-12937921 asmbl_47457 // Retained and Spliced Intron # retained_intron 13229076-13229383 (orient:+) max_ev_support = 4 # spliced_intron 13229076-13229383 (orient:+) max_ev_support = 2 scaffold_6 + intron 13229076-13229383 asmbl_47503,asmbl_47505,asmbl_47509 scaffold_6 + retained_intron 13229076-13229383 asmbl_47495,asmbl_47496,asmbl_47497,asmbl_47498 // Retained and Spliced Intron # retained_intron 13229094-13229383 (orient:+) max_ev_support = 4 # spliced_intron 13229094-13229383 (orient:+) max_ev_support = 2 scaffold_6 + intron 13229094-13229383 asmbl_47504,asmbl_47506,asmbl_47508 scaffold_6 + retained_intron 13229094-13229383 asmbl_47495,asmbl_47496,asmbl_47497,asmbl_47498 // Retained and Spliced Intron # retained_intron 13224669-13224802 (orient:+) max_ev_support = 2 # spliced_intron 13224669-13224802 (orient:+) max_ev_support = 1 scaffold_6 + intron 13224669-13224802 asmbl_47498,asmbl_47508,asmbl_47509 scaffold_6 + retained_intron 13224669-13224802 asmbl_47501 // Exon Skipping and Retention # skipped_exon 13228472-13229383 (orient:+) max_ev_support = 2 # retained_exon 13228971-13229075 (orient:+) max_ev_support = 2 scaffold_6 + retained_exons 13228971-13229075 asmbl_47503,asmbl_47509 scaffold_6 + intron_skips_exon 13228472-13229383 asmbl_47499,asmbl_47507 // Exon Skipping and Retention # skipped_exon 13228472-13229383 (orient:+) max_ev_support = 2 # retained_exon 13228971-13229093 (orient:+) max_ev_support = 2 scaffold_6 + retained_exons 13228971-13229093 asmbl_47504,asmbl_47506,asmbl_47508 scaffold_6 + intron_skips_exon 13228472-13229383 asmbl_47499,asmbl_47507 // Retained and Spliced Intron # retained_intron 13268432-13268569 (orient:+) max_ev_support = 1 # spliced_intron 13268432-13268569 (orient:+) max_ev_support = 2 scaffold_6 + intron 13268432-13268569 asmbl_47512,asmbl_47516,asmbl_47517 scaffold_6 + retained_intron 13268432-13268569 asmbl_47515 // Retained and Spliced Intron # retained_intron 13317856-13318018 (orient:+) max_ev_support = 3 # spliced_intron 13317856-13318018 (orient:+) max_ev_support = 3 scaffold_6 + intron 13317856-13318018 asmbl_47525 scaffold_6 + retained_intron 13317856-13318018 asmbl_47524 // Retained and Spliced Intron # retained_intron 13871377-13871524 (orient:+) max_ev_support = 4 # spliced_intron 13871377-13871524 (orient:+) max_ev_support = 3 scaffold_6 + intron 13871377-13871524 asmbl_47543 scaffold_6 + retained_intron 13871377-13871524 asmbl_47542 // Retained and Spliced Intron # retained_intron 13871424-13871524 (orient:+) max_ev_support = 4 # spliced_intron 13871424-13871524 (orient:+) max_ev_support = 5 scaffold_6 + intron 13871424-13871524 asmbl_47541 scaffold_6 + retained_intron 13871424-13871524 asmbl_47542 // Retained and Spliced Intron # retained_intron 13944744-13944958 (orient:+) max_ev_support = 3 # spliced_intron 13944744-13944958 (orient:+) max_ev_support = 1 scaffold_6 + intron 13944744-13944958 asmbl_47552 scaffold_6 + retained_intron 13944744-13944958 asmbl_47550,asmbl_47551 // Retained and Spliced Intron # retained_intron 13964868-13965021 (orient:+) max_ev_support = 1 # spliced_intron 13964868-13965021 (orient:+) max_ev_support = 2 scaffold_6 + intron 13964868-13965021 asmbl_47554,asmbl_47555 scaffold_6 + retained_intron 13964868-13965021 asmbl_47556 // Retained and Spliced Intron # retained_intron 13974353-13974450 (orient:+) max_ev_support = 1 # spliced_intron 13974353-13974450 (orient:+) max_ev_support = 3 scaffold_6 + intron 13974353-13974450 asmbl_47558 scaffold_6 + retained_intron 13974353-13974450 asmbl_47560 // Exon Skipping and Retention # skipped_exon 14116701-14117085 (orient:+) max_ev_support = 1 # retained_exon 14116838-14116948 (orient:+) max_ev_support = 1 scaffold_6 + retained_exons 14116838-14116948 asmbl_47581 scaffold_6 + intron_skips_exon 14116701-14117085 asmbl_47582 // Exon Skipping and Retention # skipped_exon 14116949-14117326 (orient:+) max_ev_support = 1 # retained_exon 14117086-14117196 (orient:+) max_ev_support = 1 scaffold_6 + retained_exons 14117086-14117196 asmbl_47582 scaffold_6 + intron_skips_exon 14116949-14117326 asmbl_47581 // Retained and Spliced Intron # retained_intron 14197562-14197732 (orient:+) max_ev_support = 2 # spliced_intron 14197562-14197732 (orient:+) max_ev_support = 1 scaffold_6 + intron 14197562-14197732 asmbl_47591 scaffold_6 + retained_intron 14197562-14197732 asmbl_47590 // Exon Skipping and Retention # skipped_exon 14195603-14197732 (orient:+) max_ev_support = 2 # retained_exon 14196364-14197561 (orient:+) max_ev_support = 3 scaffold_6 + retained_exons 14196364-14197561 asmbl_47591 scaffold_6 + intron_skips_exon 14195603-14197732 asmbl_47592 // Retained and Spliced Intron # retained_intron 14379745-14379856 (orient:+) max_ev_support = 3 # spliced_intron 14379745-14379856 (orient:+) max_ev_support = 1 scaffold_6 + intron 14379745-14379856 asmbl_47601 scaffold_6 + retained_intron 14379745-14379856 asmbl_47600 // Retained and Spliced Intron # retained_intron 14511822-14511873 (orient:+) max_ev_support = 2 # spliced_intron 14511822-14511873 (orient:+) max_ev_support = 1 scaffold_6 + intron 14511822-14511873 asmbl_47622 scaffold_6 + retained_intron 14511822-14511873 asmbl_47621 // Exon Skipping and Retention # skipped_exon 14593384-14594419 (orient:+) max_ev_support = 2 # retained_exon 14594006-14594041 (orient:+) max_ev_support = 1 scaffold_6 + retained_exons 14594006-14594041 asmbl_47631 scaffold_6 + intron_skips_exon 14593384-14594419 asmbl_47630 // Retained and Spliced Intron # retained_intron 14900185-14900520 (orient:+) max_ev_support = 3 # spliced_intron 14900185-14900520 (orient:+) max_ev_support = 2 scaffold_6 + intron 14900185-14900520 asmbl_47647 scaffold_6 + retained_intron 14900185-14900520 asmbl_47645 // Exon Skipping and Retention # skipped_exon 14899596-14900520 (orient:+) max_ev_support = 3 # retained_exon 14900005-14900184 (orient:+) max_ev_support = 2 scaffold_6 + retained_exons 14900005-14900184 asmbl_47647 scaffold_6 + intron_skips_exon 14899596-14900520 asmbl_47646 // Retained and Spliced Intron # retained_intron 15095011-15095132 (orient:+) max_ev_support = 3 # spliced_intron 15095011-15095132 (orient:+) max_ev_support = 1 scaffold_6 + intron 15095011-15095132 asmbl_47653 scaffold_6 + retained_intron 15095011-15095132 asmbl_47652 // Exon Skipping and Retention # skipped_exon 15362089-15363299 (orient:+) max_ev_support = 2 # retained_exon 15362406-15362461 (orient:+) max_ev_support = 1 scaffold_6 + retained_exons 15362406-15362461 asmbl_47660 scaffold_6 + intron_skips_exon 15362089-15363299 asmbl_47659 // Retained and Spliced Intron # retained_intron 15944850-15944965 (orient:+) max_ev_support = 1 # spliced_intron 15944850-15944965 (orient:+) max_ev_support = 1 scaffold_6 + intron 15944850-15944965 asmbl_47680 scaffold_6 + retained_intron 15944850-15944965 asmbl_47679,asmbl_47682 // Retained and Spliced Intron # retained_intron 15944850-15945070 (orient:+) max_ev_support = 1 # spliced_intron 15944850-15945070 (orient:+) max_ev_support = 1 scaffold_6 + intron 15944850-15945070 asmbl_47681 scaffold_6 + retained_intron 15944850-15945070 asmbl_47679 // Retained and Spliced Intron # retained_intron 15944871-15944986 (orient:+) max_ev_support = 1 # spliced_intron 15944871-15944986 (orient:+) max_ev_support = 1 scaffold_6 + intron 15944871-15944986 asmbl_47683 scaffold_6 + retained_intron 15944871-15944986 asmbl_47679,asmbl_47682 // Retained and Spliced Intron # retained_intron 15945018-15945059 (orient:+) max_ev_support = 1 # spliced_intron 15945018-15945059 (orient:+) max_ev_support = 1 scaffold_6 + intron 15945018-15945059 asmbl_47680,asmbl_47682 scaffold_6 + retained_intron 15945018-15945059 asmbl_47679 // Exon Skipping and Retention # skipped_exon 15944850-15945070 (orient:+) max_ev_support = 1 # retained_exon 15944966-15945017 (orient:+) max_ev_support = 1 scaffold_6 + retained_exons 15944966-15945017 asmbl_47680 scaffold_6 + intron_skips_exon 15944850-15945070 asmbl_47681 // Retained and Spliced Intron # retained_intron 15945144-15945206 (orient:+) max_ev_support = 1 # spliced_intron 15945144-15945206 (orient:+) max_ev_support = 1 scaffold_6 + intron 15945144-15945206 asmbl_47679 scaffold_6 + retained_intron 15945144-15945206 asmbl_47680,asmbl_47681,asmbl_47682 // Retained and Spliced Intron # retained_intron 16387153-16387269 (orient:+) max_ev_support = 2 # spliced_intron 16387153-16387269 (orient:+) max_ev_support = 3 scaffold_6 + intron 16387153-16387269 asmbl_47695 scaffold_6 + retained_intron 16387153-16387269 asmbl_47696 // Exon Skipping and Retention # skipped_exon 16604802-16607492 (orient:+) max_ev_support = 1 # retained_exon 16605135-16605330 (orient:+) max_ev_support = 1 scaffold_6 + retained_exons 16605135-16605330 asmbl_47709 scaffold_6 + intron_skips_exon 16604802-16607492 asmbl_47710 // Retained and Spliced Intron # retained_intron 16613086-16613686 (orient:+) max_ev_support = 2 # spliced_intron 16613086-16613686 (orient:+) max_ev_support = 3 scaffold_6 + intron 16613086-16613686 asmbl_47712,asmbl_47714 scaffold_6 + retained_intron 16613086-16613686 asmbl_47713 // Retained and Spliced Intron # retained_intron 16614134-16614236 (orient:+) max_ev_support = 1 # spliced_intron 16614134-16614236 (orient:+) max_ev_support = 3 scaffold_6 + intron 16614134-16614236 asmbl_47712,asmbl_47713 scaffold_6 + retained_intron 16614134-16614236 asmbl_47714 // Retained and Spliced Intron # retained_intron 17522323-17523320 (orient:+) max_ev_support = 5 # spliced_intron 17522323-17523320 (orient:+) max_ev_support = 2 scaffold_6 + intron 17522323-17523320 asmbl_47762,asmbl_47764 scaffold_6 + retained_intron 17522323-17523320 asmbl_47761 // Retained and Spliced Intron # retained_intron 17524201-17525243 (orient:+) max_ev_support = 4 # spliced_intron 17524201-17525243 (orient:+) max_ev_support = 2 scaffold_6 + intron 17524201-17525243 asmbl_47764 scaffold_6 + retained_intron 17524201-17525243 asmbl_47761,asmbl_47762,asmbl_47763 // Exon Skipping and Retention # skipped_exon 17522092-17523322 (orient:+) max_ev_support = 1 # retained_exon 17522228-17522322 (orient:+) max_ev_support = 2 scaffold_6 + retained_exons 17522228-17522322 asmbl_47762,asmbl_47764 scaffold_6 + intron_skips_exon 17522092-17523322 asmbl_47763 // Retained and Spliced Intron # retained_intron 17670897-17672065 (orient:+) max_ev_support = 2 # spliced_intron 17670897-17672065 (orient:+) max_ev_support = 3 scaffold_6 + intron 17670897-17672065 asmbl_47771,asmbl_47773,asmbl_47775 scaffold_6 + retained_intron 17670897-17672065 asmbl_47772,asmbl_47774,asmbl_47777 // Retained and Spliced Intron # retained_intron 17671975-17672065 (orient:+) max_ev_support = 2 # spliced_intron 17671975-17672065 (orient:+) max_ev_support = 2 scaffold_6 + intron 17671975-17672065 asmbl_47776 scaffold_6 + retained_intron 17671975-17672065 asmbl_47772,asmbl_47774,asmbl_47777 // Retained and Spliced Intron # retained_intron 17672230-17672360 (orient:+) max_ev_support = 2 # spliced_intron 17672230-17672360 (orient:+) max_ev_support = 3 scaffold_6 + intron 17672230-17672360 asmbl_47771,asmbl_47774,asmbl_47775,asmbl_47776,asmbl_47777 scaffold_6 + retained_intron 17672230-17672360 asmbl_47772,asmbl_47773 // Retained and Spliced Intron # retained_intron 17672463-17672607 (orient:+) max_ev_support = 2 # spliced_intron 17672463-17672607 (orient:+) max_ev_support = 3 scaffold_6 + intron 17672463-17672607 asmbl_47771,asmbl_47776,asmbl_47777 scaffold_6 + retained_intron 17672463-17672607 asmbl_47772,asmbl_47773,asmbl_47774,asmbl_47775 // Exon Skipping and Retention # skipped_exon 17847263-17848256 (orient:+) max_ev_support = 1 # retained_exon 17847751-17847759 (orient:+) max_ev_support = 1 scaffold_6 + retained_exons 17847751-17847759 asmbl_47792 scaffold_6 + intron_skips_exon 17847263-17848256 asmbl_47791 // Exon Skipping and Retention # skipped_exon 17885654-17886862 (orient:+) max_ev_support = 3 # retained_exon 17886316-17886665 (orient:+) max_ev_support = 3 scaffold_6 + retained_exons 17886316-17886665 asmbl_47796 scaffold_6 + retained_exons 17886316-17886424,17886622-17886665 asmbl_47797 scaffold_6 + intron_skips_exon 17885654-17886862 asmbl_47798 // Retained and Spliced Intron # retained_intron 17886425-17886621 (orient:+) max_ev_support = 3 # spliced_intron 17886425-17886621 (orient:+) max_ev_support = 3 scaffold_6 + intron 17886425-17886621 asmbl_47797 scaffold_6 + retained_intron 17886425-17886621 asmbl_47796 // Exon Skipping and Retention # skipped_exon 17885654-17886621 (orient:+) max_ev_support = 2 # retained_exon 17886316-17886424 (orient:+) max_ev_support = 3 scaffold_6 + retained_exons 17886316-17886424 asmbl_47797 scaffold_6 + intron_skips_exon 17885654-17886621 asmbl_47799 // Retained and Spliced Intron # retained_intron 18077604-18078336 (orient:+) max_ev_support = 5 # spliced_intron 18077604-18078336 (orient:+) max_ev_support = 1 scaffold_6 + intron 18077604-18078336 asmbl_47813 scaffold_6 + retained_intron 18077604-18078336 asmbl_47812 // Retained and Spliced Intron # retained_intron 18098902-18099238 (orient:+) max_ev_support = 2 # spliced_intron 18098902-18099238 (orient:+) max_ev_support = 2 scaffold_6 + intron 18098902-18099238 asmbl_47820 scaffold_6 + retained_intron 18098902-18099238 asmbl_47821 // Retained and Spliced Intron # retained_intron 18269465-18269732 (orient:+) max_ev_support = 3 # spliced_intron 18269465-18269732 (orient:+) max_ev_support = 2 scaffold_6 + intron 18269465-18269732 asmbl_47827,asmbl_47828 scaffold_6 + retained_intron 18269465-18269732 asmbl_47826 // Retained and Spliced Intron # retained_intron 18269773-18269974 (orient:+) max_ev_support = 2 # spliced_intron 18269773-18269974 (orient:+) max_ev_support = 2 scaffold_6 + intron 18269773-18269974 asmbl_47827 scaffold_6 + retained_intron 18269773-18269974 asmbl_47826,asmbl_47828 // Exon Skipping and Retention # skipped_exon 18659791-18661833 (orient:+) max_ev_support = 3 # retained_exon 18660363-18660383 (orient:+) max_ev_support = 1 scaffold_6 + retained_exons 18660363-18660383 asmbl_47835 scaffold_6 + intron_skips_exon 18659791-18661833 asmbl_47834 // Retained and Spliced Intron # retained_intron 18691242-18691696 (orient:+) max_ev_support = 2 # spliced_intron 18691242-18691696 (orient:+) max_ev_support = 3 scaffold_6 + intron 18691242-18691696 asmbl_47841,asmbl_47843 scaffold_6 + retained_intron 18691242-18691696 asmbl_47842 // Retained and Spliced Intron # retained_intron 18716897-18717097 (orient:+) max_ev_support = 3 # spliced_intron 18716897-18717097 (orient:+) max_ev_support = 1 scaffold_6 + intron 18716897-18717097 asmbl_47846 scaffold_6 + retained_intron 18716897-18717097 asmbl_47847,asmbl_47848 // Retained and Spliced Intron # retained_intron 19075642-19075763 (orient:+) max_ev_support = 3 # spliced_intron 19075642-19075763 (orient:+) max_ev_support = 2 scaffold_6 + intron 19075642-19075763 asmbl_47870,asmbl_47873 scaffold_6 + retained_intron 19075642-19075763 asmbl_47868,asmbl_47871,asmbl_47872 // Retained and Spliced Intron # retained_intron 19075642-19076743 (orient:+) max_ev_support = 3 # spliced_intron 19075642-19076743 (orient:+) max_ev_support = 3 scaffold_6 + intron 19075642-19076743 asmbl_47869 scaffold_6 + retained_intron 19075642-19076743 asmbl_47868,asmbl_47871,asmbl_47872 // Retained and Spliced Intron # retained_intron 19076966-19077208 (orient:+) max_ev_support = 3 # spliced_intron 19076966-19077208 (orient:+) max_ev_support = 3 scaffold_6 + intron 19076966-19077208 asmbl_47868,asmbl_47871,asmbl_47873 scaffold_6 + retained_intron 19076966-19077208 asmbl_47870 // Retained and Spliced Intron # retained_intron 19076979-19077208 (orient:+) max_ev_support = 3 # spliced_intron 19076979-19077208 (orient:+) max_ev_support = 3 scaffold_6 + intron 19076979-19077208 asmbl_47869,asmbl_47872 scaffold_6 + retained_intron 19076979-19077208 asmbl_47870 // Retained and Spliced Intron # retained_intron 19074609-19074822 (orient:+) max_ev_support = 2 # spliced_intron 19074609-19074822 (orient:+) max_ev_support = 3 scaffold_6 + intron 19074609-19074822 asmbl_47868,asmbl_47869,asmbl_47870,asmbl_47872,asmbl_47873 scaffold_6 + retained_intron 19074609-19074822 asmbl_47871 // Retained and Spliced Intron # retained_intron 19111383-19111555 (orient:+) max_ev_support = 3 # spliced_intron 19111383-19111555 (orient:+) max_ev_support = 3 scaffold_6 + intron 19111383-19111555 asmbl_47877,asmbl_47878 scaffold_6 + retained_intron 19111383-19111555 asmbl_47876 // Retained and Spliced Intron # retained_intron 73979-74164 (orient:-) max_ev_support = 2 # spliced_intron 73979-74164 (orient:-) max_ev_support = 1 scaffold_6 - intron 73979-74164 asmbl_48021 scaffold_6 - retained_intron 73979-74164 asmbl_48018,asmbl_48019,asmbl_48020 // Retained and Spliced Intron # retained_intron 72768-72798 (orient:-) max_ev_support = 1 # spliced_intron 72768-72798 (orient:-) max_ev_support = 2 scaffold_6 - intron 72768-72798 asmbl_48018,asmbl_48019 scaffold_6 - retained_intron 72768-72798 asmbl_48020,asmbl_48021 // Retained and Spliced Intron # retained_intron 126870-126945 (orient:-) max_ev_support = 1 # spliced_intron 126870-126945 (orient:-) max_ev_support = 1 scaffold_6 - intron 126870-126945 asmbl_48022,asmbl_48023 scaffold_6 - retained_intron 126870-126945 asmbl_48024 // Retained and Spliced Intron # retained_intron 569633-569861 (orient:-) max_ev_support = 2 # spliced_intron 569633-569861 (orient:-) max_ev_support = 2 scaffold_6 - intron 569633-569861 asmbl_48040 scaffold_6 - retained_intron 569633-569861 asmbl_48041 // Retained and Spliced Intron # retained_intron 796568-796819 (orient:-) max_ev_support = 2 # spliced_intron 796568-796819 (orient:-) max_ev_support = 1 scaffold_6 - intron 796568-796819 asmbl_48068,asmbl_48069 scaffold_6 - retained_intron 796568-796819 asmbl_48067,asmbl_48070 // Retained and Spliced Intron # retained_intron 797115-797273 (orient:-) max_ev_support = 1 # spliced_intron 797115-797273 (orient:-) max_ev_support = 2 scaffold_6 - intron 797115-797273 asmbl_48067,asmbl_48069 scaffold_6 - retained_intron 797115-797273 asmbl_48070 // Retained and Spliced Intron # retained_intron 853752-853844 (orient:-) max_ev_support = 1 # spliced_intron 853752-853844 (orient:-) max_ev_support = 2 scaffold_6 - intron 853752-853844 asmbl_48074,asmbl_48075,asmbl_48077 scaffold_6 - retained_intron 853752-853844 asmbl_48076 // Retained and Spliced Intron # retained_intron 1345974-1346244 (orient:-) max_ev_support = 4 # spliced_intron 1345974-1346244 (orient:-) max_ev_support = 2 scaffold_6 - intron 1345974-1346244 asmbl_48097,asmbl_48100 scaffold_6 - retained_intron 1345974-1346244 asmbl_48096 // Retained and Spliced Intron # retained_intron 1749516-1750052 (orient:-) max_ev_support = 2 # spliced_intron 1749516-1750052 (orient:-) max_ev_support = 2 scaffold_6 - intron 1749516-1750052 asmbl_48115,asmbl_48116,asmbl_48120 scaffold_6 - retained_intron 1749516-1750052 asmbl_48113,asmbl_48114,asmbl_48117,asmbl_48119 // Retained and Spliced Intron # retained_intron 1750960-1751447 (orient:-) max_ev_support = 2 # spliced_intron 1750960-1751447 (orient:-) max_ev_support = 1 scaffold_6 - intron 1750960-1751447 asmbl_48122 scaffold_6 - retained_intron 1750960-1751447 asmbl_48113,asmbl_48118,asmbl_48121 // Retained and Spliced Intron # retained_intron 2481572-2481735 (orient:-) max_ev_support = 2 # spliced_intron 2481572-2481735 (orient:-) max_ev_support = 1 scaffold_6 - intron 2481572-2481735 asmbl_48131 scaffold_6 - retained_intron 2481572-2481735 asmbl_48128,asmbl_48132 // Retained and Spliced Intron # retained_intron 2479060-2479128 (orient:-) max_ev_support = 2 # spliced_intron 2479060-2479128 (orient:-) max_ev_support = 1 scaffold_6 - intron 2479060-2479128 asmbl_48130 scaffold_6 - retained_intron 2479060-2479128 asmbl_48129 // Exon Skipping and Retention # skipped_exon 2480100-2481735 (orient:-) max_ev_support = 2 # retained_exon 2481516-2481571 (orient:-) max_ev_support = 1 scaffold_6 - retained_exons 2481516-2481571 asmbl_48131 scaffold_6 - intron_skips_exon 2480100-2481735 asmbl_48127 // Retained and Spliced Intron # retained_intron 2699075-2699232 (orient:-) max_ev_support = 1 # spliced_intron 2699075-2699232 (orient:-) max_ev_support = 1 scaffold_6 - intron 2699075-2699232 asmbl_48149,asmbl_48151 scaffold_6 - retained_intron 2699075-2699232 asmbl_48150 // Exon Skipping and Retention # skipped_exon 2743934-2744894 (orient:-) max_ev_support = 2 # retained_exon 2744391-2744477 (orient:-) max_ev_support = 2 scaffold_6 - retained_exons 2744391-2744477 asmbl_48156 scaffold_6 - intron_skips_exon 2743934-2744894 asmbl_48157 // Exon Skipping and Retention # skipped_exon 2744478-2745595 (orient:-) max_ev_support = 1 # retained_exon 2744895-2744981 (orient:-) max_ev_support = 2 scaffold_6 - retained_exons 2744895-2744981 asmbl_48157 scaffold_6 - intron_skips_exon 2744478-2745595 asmbl_48156 // Exon Skipping and Retention # skipped_exon 2844284-2844733 (orient:-) max_ev_support = 2 # retained_exon 2844585-2844644 (orient:-) max_ev_support = 2 scaffold_6 - retained_exons 2844585-2844644 asmbl_48168 scaffold_6 - intron_skips_exon 2844284-2844733 asmbl_48169,asmbl_48171 // Exon Skipping and Retention # skipped_exon 2843454-2844211 (orient:-) max_ev_support = 2 # retained_exon 2843958-2844035 (orient:-) max_ev_support = 1 scaffold_6 - retained_exons 2843958-2844035 asmbl_48170,asmbl_48171 scaffold_6 - intron_skips_exon 2843454-2844211 asmbl_48168,asmbl_48169 // Exon Skipping and Retention # skipped_exon 2880569-2881381 (orient:-) max_ev_support = 2 # retained_exon 2880868-2881101 (orient:-) max_ev_support = 2 scaffold_6 - retained_exons 2880868-2881101 asmbl_48180 scaffold_6 - intron_skips_exon 2880569-2881381 asmbl_48182 // Exon Skipping and Retention # skipped_exon 2881102-2881381 (orient:-) max_ev_support = 2 # retained_exon 2881249-2881305 (orient:-) max_ev_support = 2 scaffold_6 - retained_exons 2881249-2881305 asmbl_48181 scaffold_6 - intron_skips_exon 2881102-2881381 asmbl_48180 // Exon Skipping and Retention # skipped_exon 2925434-2927522 (orient:-) max_ev_support = 1 # retained_exon 2926280-2926388 (orient:-) max_ev_support = 2 scaffold_6 - retained_exons 2926280-2926388 asmbl_48194,asmbl_48195 scaffold_6 - intron_skips_exon 2925434-2927522 asmbl_48197 // Exon Skipping and Retention # skipped_exon 3041154-3042596 (orient:-) max_ev_support = 2 # retained_exon 3041413-3041909 (orient:-) max_ev_support = 2 scaffold_6 - retained_exons 3041413-3041909 asmbl_48218 scaffold_6 - intron_skips_exon 3041154-3042596 asmbl_48220 // Exon Skipping and Retention # skipped_exon 3041910-3042596 (orient:-) max_ev_support = 2 # retained_exon 3042228-3042317 (orient:-) max_ev_support = 2 scaffold_6 - retained_exons 3042228-3042317 asmbl_48219 scaffold_6 - intron_skips_exon 3041910-3042596 asmbl_48218 // Retained and Spliced Intron # retained_intron 3218305-3218462 (orient:-) max_ev_support = 2 # spliced_intron 3218305-3218462 (orient:-) max_ev_support = 1 scaffold_6 - intron 3218305-3218462 asmbl_48232,asmbl_48233 scaffold_6 - retained_intron 3218305-3218462 asmbl_48230,asmbl_48231 // Exon Skipping and Retention # skipped_exon 3320407-3320929 (orient:-) max_ev_support = 2 # retained_exon 3320658-3320770 (orient:-) max_ev_support = 2 scaffold_6 - retained_exons 3320658-3320770 asmbl_48245 scaffold_6 - intron_skips_exon 3320407-3320929 asmbl_48247 // Exon Skipping and Retention # skipped_exon 3320407-3320916 (orient:-) max_ev_support = 1 # retained_exon 3320658-3320770 (orient:-) max_ev_support = 2 scaffold_6 - retained_exons 3320658-3320770 asmbl_48245 scaffold_6 - intron_skips_exon 3320407-3320916 asmbl_48248 // Retained and Spliced Intron # retained_intron 3320771-3320929 (orient:-) max_ev_support = 1 # spliced_intron 3320771-3320929 (orient:-) max_ev_support = 1 scaffold_6 - intron 3320771-3320929 asmbl_48245 scaffold_6 - retained_intron 3320771-3320929 asmbl_48246 // Retained and Spliced Intron # retained_intron 3564649-3564671 (orient:-) max_ev_support = 2 # spliced_intron 3564649-3564671 (orient:-) max_ev_support = 1 scaffold_6 - intron 3564649-3564671 asmbl_48271 scaffold_6 - retained_intron 3564649-3564671 asmbl_48270 // Exon Skipping and Retention # skipped_exon 4279650-4280395 (orient:-) max_ev_support = 1 # retained_exon 4279832-4279983 (orient:-) max_ev_support = 4 scaffold_6 - retained_exons 4279832-4279983 asmbl_48301 scaffold_6 - intron_skips_exon 4279650-4280395 asmbl_48303 // Retained and Spliced Intron # retained_intron 4519219-4519479 (orient:-) max_ev_support = 2 # spliced_intron 4519219-4519479 (orient:-) max_ev_support = 3 scaffold_6 - intron 4519219-4519479 asmbl_48328 scaffold_6 - retained_intron 4519219-4519479 asmbl_48329 // Retained and Spliced Intron # retained_intron 4535550-4536418 (orient:-) max_ev_support = 3 # spliced_intron 4535550-4536418 (orient:-) max_ev_support = 2 scaffold_6 - intron 4535550-4536418 asmbl_48336 scaffold_6 - retained_intron 4535550-4536418 asmbl_48334,asmbl_48335 // Retained and Spliced Intron # retained_intron 4535550-4536424 (orient:-) max_ev_support = 3 # spliced_intron 4535550-4536424 (orient:-) max_ev_support = 1 scaffold_6 - intron 4535550-4536424 asmbl_48337 scaffold_6 - retained_intron 4535550-4536424 asmbl_48334,asmbl_48335 // Retained and Spliced Intron # retained_intron 4538209-4538366 (orient:-) max_ev_support = 2 # spliced_intron 4538209-4538366 (orient:-) max_ev_support = 1 scaffold_6 - intron 4538209-4538366 asmbl_48335 scaffold_6 - retained_intron 4538209-4538366 asmbl_48334,asmbl_48337 // Retained and Spliced Intron # retained_intron 4538209-4538372 (orient:-) max_ev_support = 2 # spliced_intron 4538209-4538372 (orient:-) max_ev_support = 2 scaffold_6 - intron 4538209-4538372 asmbl_48336 scaffold_6 - retained_intron 4538209-4538372 asmbl_48334,asmbl_48337 // Retained and Spliced Intron # retained_intron 4826646-4826724 (orient:-) max_ev_support = 1 # spliced_intron 4826646-4826724 (orient:-) max_ev_support = 2 scaffold_6 - intron 4826646-4826724 asmbl_48357 scaffold_6 - retained_intron 4826646-4826724 asmbl_48358 // Retained and Spliced Intron # retained_intron 4832299-4832373 (orient:-) max_ev_support = 1 # spliced_intron 4832299-4832373 (orient:-) max_ev_support = 2 scaffold_6 - intron 4832299-4832373 asmbl_48360 scaffold_6 - retained_intron 4832299-4832373 asmbl_48361 // Exon Skipping and Retention # skipped_exon 4931559-4933652 (orient:-) max_ev_support = 2 # retained_exon 4932958-4933047 (orient:-) max_ev_support = 2 scaffold_6 - retained_exons 4932958-4933047 asmbl_48369 scaffold_6 - intron_skips_exon 4931559-4933652 asmbl_48370 // Retained and Spliced Intron # retained_intron 4962197-4962323 (orient:-) max_ev_support = 1 # spliced_intron 4962197-4962323 (orient:-) max_ev_support = 1 scaffold_6 - intron 4962197-4962323 asmbl_48372,asmbl_48374 scaffold_6 - retained_intron 4962197-4962323 asmbl_48375 // Retained and Spliced Intron # retained_intron 5021998-5022641 (orient:-) max_ev_support = 5 # spliced_intron 5021998-5022641 (orient:-) max_ev_support = 1 scaffold_6 - intron 5021998-5022641 asmbl_48386 scaffold_6 - retained_intron 5021998-5022641 asmbl_48385 // Retained and Spliced Intron # retained_intron 5054843-5054934 (orient:-) max_ev_support = 3 # spliced_intron 5054843-5054934 (orient:-) max_ev_support = 2 scaffold_6 - intron 5054843-5054934 asmbl_48389,asmbl_48390,asmbl_48391,asmbl_48395 scaffold_6 - retained_intron 5054843-5054934 asmbl_48388 // Exon Skipping and Retention # skipped_exon 5057085-5058540 (orient:-) max_ev_support = 1 # retained_exon 5058279-5058314 (orient:-) max_ev_support = 2 scaffold_6 - retained_exons 5058279-5058314 asmbl_48388,asmbl_48389,asmbl_48395 scaffold_6 - intron_skips_exon 5057085-5058540 asmbl_48391 // Retained and Spliced Intron # retained_intron 5084001-5084167 (orient:-) max_ev_support = 1 # spliced_intron 5084001-5084167 (orient:-) max_ev_support = 2 scaffold_6 - intron 5084001-5084167 asmbl_48398,asmbl_48399 scaffold_6 - retained_intron 5084001-5084167 asmbl_48400 // Retained and Spliced Intron # retained_intron 5438307-5438405 (orient:-) max_ev_support = 1 # spliced_intron 5438307-5438405 (orient:-) max_ev_support = 2 scaffold_6 - intron 5438307-5438405 asmbl_48424 scaffold_6 - retained_intron 5438307-5438405 asmbl_48425 // Retained and Spliced Intron # retained_intron 5644143-5644250 (orient:-) max_ev_support = 2 # spliced_intron 5644143-5644250 (orient:-) max_ev_support = 4 scaffold_6 - intron 5644143-5644250 asmbl_48428 scaffold_6 - retained_intron 5644143-5644250 asmbl_48429 // Retained and Spliced Intron # retained_intron 6708324-6709026 (orient:-) max_ev_support = 1 # spliced_intron 6708324-6709026 (orient:-) max_ev_support = 1 scaffold_6 - intron 6708324-6709026 asmbl_48462 scaffold_6 - retained_intron 6708324-6709026 asmbl_48461 // Retained and Spliced Intron # retained_intron 6755355-6755511 (orient:-) max_ev_support = 1 # spliced_intron 6755355-6755511 (orient:-) max_ev_support = 1 scaffold_6 - intron 6755355-6755511 asmbl_48465 scaffold_6 - retained_intron 6755355-6755511 asmbl_48464 // Retained and Spliced Intron # retained_intron 7185172-7185279 (orient:-) max_ev_support = 1 # spliced_intron 7185172-7185279 (orient:-) max_ev_support = 2 scaffold_6 - intron 7185172-7185279 asmbl_48480 scaffold_6 - retained_intron 7185172-7185279 asmbl_48481,asmbl_48482 // Retained and Spliced Intron # retained_intron 7185667-7185920 (orient:-) max_ev_support = 1 # spliced_intron 7185667-7185920 (orient:-) max_ev_support = 2 scaffold_6 - intron 7185667-7185920 asmbl_48480,asmbl_48481 scaffold_6 - retained_intron 7185667-7185920 asmbl_48482 // Retained and Spliced Intron # retained_intron 7516477-7516579 (orient:-) max_ev_support = 1 # spliced_intron 7516477-7516579 (orient:-) max_ev_support = 2 scaffold_6 - intron 7516477-7516579 asmbl_48497 scaffold_6 - retained_intron 7516477-7516579 asmbl_48499,asmbl_48501 // Retained and Spliced Intron # retained_intron 7516477-7517141 (orient:-) max_ev_support = 3 # spliced_intron 7516477-7517141 (orient:-) max_ev_support = 1 scaffold_6 - intron 7516477-7517141 asmbl_48500,asmbl_48502 scaffold_6 - retained_intron 7516477-7517141 asmbl_48499 // Retained and Spliced Intron # retained_intron 7516493-7516579 (orient:-) max_ev_support = 1 # spliced_intron 7516493-7516579 (orient:-) max_ev_support = 2 scaffold_6 - intron 7516493-7516579 asmbl_48496,asmbl_48498 scaffold_6 - retained_intron 7516493-7516579 asmbl_48499,asmbl_48501 // Retained and Spliced Intron # retained_intron 7937253-7937838 (orient:-) max_ev_support = 2 # spliced_intron 7937253-7937838 (orient:-) max_ev_support = 1 scaffold_6 - intron 7937253-7937838 asmbl_48515 scaffold_6 - retained_intron 7937253-7937838 asmbl_48510,asmbl_48513,asmbl_48514 // Retained and Spliced Intron # retained_intron 7937253-7938427 (orient:-) max_ev_support = 2 # spliced_intron 7937253-7938427 (orient:-) max_ev_support = 1 scaffold_6 - intron 7937253-7938427 asmbl_48511,asmbl_48512,asmbl_48516,asmbl_48517 scaffold_6 - retained_intron 7937253-7938427 asmbl_48510,asmbl_48513,asmbl_48514 // Retained and Spliced Intron # retained_intron 7936991-7937104 (orient:-) max_ev_support = 1 # spliced_intron 7936991-7937104 (orient:-) max_ev_support = 1 scaffold_6 - intron 7936991-7937104 asmbl_48516 scaffold_6 - retained_intron 7936991-7937104 asmbl_48512 // Retained and Spliced Intron # retained_intron 7936991-7937111 (orient:-) max_ev_support = 1 # spliced_intron 7936991-7937111 (orient:-) max_ev_support = 2 scaffold_6 - intron 7936991-7937111 asmbl_48510,asmbl_48511,asmbl_48513,asmbl_48514,asmbl_48515,asmbl_48517 scaffold_6 - retained_intron 7936991-7937111 asmbl_48512 // Retained and Spliced Intron # retained_intron 7935430-7936138 (orient:-) max_ev_support = 1 # spliced_intron 7935430-7936138 (orient:-) max_ev_support = 2 scaffold_6 - intron 7935430-7936138 asmbl_48510,asmbl_48511,asmbl_48512,asmbl_48513,asmbl_48515,asmbl_48516 scaffold_6 - retained_intron 7935430-7936138 asmbl_48514,asmbl_48517 // Retained and Spliced Intron # retained_intron 8164348-8164374 (orient:-) max_ev_support = 1 # spliced_intron 8164348-8164374 (orient:-) max_ev_support = 1 scaffold_6 - intron 8164348-8164374 asmbl_48533 scaffold_6 - retained_intron 8164348-8164374 asmbl_48534 // Retained and Spliced Intron # retained_intron 8172023-8172117 (orient:-) max_ev_support = 2 # spliced_intron 8172023-8172117 (orient:-) max_ev_support = 2 scaffold_6 - intron 8172023-8172117 asmbl_48536,asmbl_48538,asmbl_48541,asmbl_48542,asmbl_48544 scaffold_6 - retained_intron 8172023-8172117 asmbl_48535,asmbl_48537,asmbl_48543,asmbl_48545 // Retained and Spliced Intron # retained_intron 8172176-8172279 (orient:-) max_ev_support = 2 # spliced_intron 8172176-8172279 (orient:-) max_ev_support = 2 scaffold_6 - intron 8172176-8172279 asmbl_48538,asmbl_48541,asmbl_48542,asmbl_48543,asmbl_48544,asmbl_48545 scaffold_6 - retained_intron 8172176-8172279 asmbl_48535,asmbl_48536,asmbl_48537 // Retained and Spliced Intron # retained_intron 8172324-8172399 (orient:-) max_ev_support = 2 # spliced_intron 8172324-8172399 (orient:-) max_ev_support = 2 scaffold_6 - intron 8172324-8172399 asmbl_48538,asmbl_48541,asmbl_48542,asmbl_48543,asmbl_48544,asmbl_48545 scaffold_6 - retained_intron 8172324-8172399 asmbl_48535,asmbl_48536,asmbl_48537 // Retained and Spliced Intron # retained_intron 8172579-8172708 (orient:-) max_ev_support = 2 # spliced_intron 8172579-8172708 (orient:-) max_ev_support = 1 scaffold_6 - intron 8172579-8172708 asmbl_48541,asmbl_48542 scaffold_6 - retained_intron 8172579-8172708 asmbl_48535,asmbl_48536,asmbl_48537 // Retained and Spliced Intron # retained_intron 8172579-8172828 (orient:-) max_ev_support = 2 # spliced_intron 8172579-8172828 (orient:-) max_ev_support = 2 scaffold_6 - intron 8172579-8172828 asmbl_48538,asmbl_48543,asmbl_48544,asmbl_48545 scaffold_6 - retained_intron 8172579-8172828 asmbl_48535,asmbl_48536,asmbl_48537 // Retained and Spliced Intron # retained_intron 8175225-8175459 (orient:-) max_ev_support = 2 # spliced_intron 8175225-8175459 (orient:-) max_ev_support = 1 scaffold_6 - intron 8175225-8175459 asmbl_48543,asmbl_48544 scaffold_6 - retained_intron 8175225-8175459 asmbl_48537,asmbl_48538,asmbl_48540,asmbl_48545 // Exon Skipping and Retention # skipped_exon 8172803-8173560 (orient:-) max_ev_support = 1 # retained_exon 8172829-8172944 (orient:-) max_ev_support = 2 scaffold_6 - retained_exons 8172829-8172944 asmbl_48538,asmbl_48543,asmbl_48544,asmbl_48545 scaffold_6 - intron_skips_exon 8172803-8173560 asmbl_48542 // Retained and Spliced Intron # retained_intron 8173665-8173844 (orient:-) max_ev_support = 2 # spliced_intron 8173665-8173844 (orient:-) max_ev_support = 2 scaffold_6 - intron 8173665-8173844 asmbl_48537,asmbl_48538,asmbl_48540,asmbl_48542,asmbl_48543,asmbl_48544,asmbl_48545 scaffold_6 - retained_intron 8173665-8173844 asmbl_48539 // Retained and Spliced Intron # retained_intron 8173890-8174001 (orient:-) max_ev_support = 2 # spliced_intron 8173890-8174001 (orient:-) max_ev_support = 2 scaffold_6 - intron 8173890-8174001 asmbl_48537,asmbl_48538,asmbl_48542,asmbl_48544,asmbl_48545 scaffold_6 - retained_intron 8173890-8174001 asmbl_48540,asmbl_48543 // Retained and Spliced Intron # retained_intron 8174054-8174789 (orient:-) max_ev_support = 2 # spliced_intron 8174054-8174789 (orient:-) max_ev_support = 2 scaffold_6 - intron 8174054-8174789 asmbl_48537,asmbl_48538,asmbl_48542,asmbl_48544,asmbl_48545 scaffold_6 - retained_intron 8174054-8174789 asmbl_48540,asmbl_48543 // Exon Skipping and Retention # skipped_exon 8172579-8172828 (orient:-) max_ev_support = 2 # retained_exon 8172709-8172802 (orient:-) max_ev_support = 1 scaffold_6 - retained_exons 8172709-8172802 asmbl_48542 scaffold_6 - intron_skips_exon 8172579-8172828 asmbl_48538,asmbl_48543,asmbl_48544,asmbl_48545 // Retained and Spliced Intron # retained_intron 8171724-8171933 (orient:-) max_ev_support = 1 # spliced_intron 8171724-8171933 (orient:-) max_ev_support = 2 scaffold_6 - intron 8171724-8171933 asmbl_48538,asmbl_48541,asmbl_48542,asmbl_48543,asmbl_48544 scaffold_6 - retained_intron 8171724-8171933 asmbl_48545 // Retained and Spliced Intron # retained_intron 8475432-8475513 (orient:-) max_ev_support = 1 # spliced_intron 8475432-8475513 (orient:-) max_ev_support = 2 scaffold_6 - intron 8475432-8475513 asmbl_48560 scaffold_6 - retained_intron 8475432-8475513 asmbl_48561 // Retained and Spliced Intron # retained_intron 8560637-8560723 (orient:-) max_ev_support = 1 # spliced_intron 8560637-8560723 (orient:-) max_ev_support = 1 scaffold_6 - intron 8560637-8560723 asmbl_48566,asmbl_48567 scaffold_6 - retained_intron 8560637-8560723 asmbl_48568 // Retained and Spliced Intron # retained_intron 8636212-8636466 (orient:-) max_ev_support = 3 # spliced_intron 8636212-8636466 (orient:-) max_ev_support = 3 scaffold_6 - intron 8636212-8636466 asmbl_48576 scaffold_6 - retained_intron 8636212-8636466 asmbl_48575 // Retained and Spliced Intron # retained_intron 8645146-8645230 (orient:-) max_ev_support = 1 # spliced_intron 8645146-8645230 (orient:-) max_ev_support = 2 scaffold_6 - intron 8645146-8645230 asmbl_48579 scaffold_6 - retained_intron 8645146-8645230 asmbl_48581 // Retained and Spliced Intron # retained_intron 8878330-8878408 (orient:-) max_ev_support = 1 # spliced_intron 8878330-8878408 (orient:-) max_ev_support = 2 scaffold_6 - intron 8878330-8878408 asmbl_48597 scaffold_6 - retained_intron 8878330-8878408 asmbl_48598 // Retained and Spliced Intron # retained_intron 8922099-8922181 (orient:-) max_ev_support = 3 # spliced_intron 8922099-8922181 (orient:-) max_ev_support = 1 scaffold_6 - intron 8922099-8922181 asmbl_48604 scaffold_6 - retained_intron 8922099-8922181 asmbl_48603 // Retained and Spliced Intron # retained_intron 9091532-9091638 (orient:-) max_ev_support = 2 # spliced_intron 9091532-9091638 (orient:-) max_ev_support = 2 scaffold_6 - intron 9091532-9091638 asmbl_48607 scaffold_6 - retained_intron 9091532-9091638 asmbl_48606 // Exon Skipping and Retention # skipped_exon 9150989-9151553 (orient:-) max_ev_support = 2 # retained_exon 9151246-9151291 (orient:-) max_ev_support = 1 scaffold_6 - retained_exons 9151246-9151291 asmbl_48609,asmbl_48611 scaffold_6 - intron_skips_exon 9150989-9151553 asmbl_48608,asmbl_48610 // Retained and Spliced Intron # retained_intron 9365865-9366049 (orient:-) max_ev_support = 1 # spliced_intron 9365865-9366049 (orient:-) max_ev_support = 2 scaffold_6 - intron 9365865-9366049 asmbl_48621 scaffold_6 - retained_intron 9365865-9366049 asmbl_48622 // Retained and Spliced Intron # retained_intron 10958023-10958151 (orient:-) max_ev_support = 1 # spliced_intron 10958023-10958151 (orient:-) max_ev_support = 2 scaffold_6 - intron 10958023-10958151 asmbl_48725 scaffold_6 - retained_intron 10958023-10958151 asmbl_48726 // Retained and Spliced Intron # retained_intron 11114758-11114940 (orient:-) max_ev_support = 3 # spliced_intron 11114758-11114940 (orient:-) max_ev_support = 2 scaffold_6 - intron 11114758-11114940 asmbl_48740,asmbl_48741,asmbl_48742 scaffold_6 - retained_intron 11114758-11114940 asmbl_48739 // Retained and Spliced Intron # retained_intron 11456049-11456165 (orient:-) max_ev_support = 2 # spliced_intron 11456049-11456165 (orient:-) max_ev_support = 2 scaffold_6 - intron 11456049-11456165 asmbl_48753 scaffold_6 - retained_intron 11456049-11456165 asmbl_48752 // Retained and Spliced Intron # retained_intron 11463538-11463675 (orient:-) max_ev_support = 1 # spliced_intron 11463538-11463675 (orient:-) max_ev_support = 2 scaffold_6 - intron 11463538-11463675 asmbl_48755,asmbl_48757 scaffold_6 - retained_intron 11463538-11463675 asmbl_48756 // Retained and Spliced Intron # retained_intron 12034964-12035191 (orient:-) max_ev_support = 2 # spliced_intron 12034964-12035191 (orient:-) max_ev_support = 2 scaffold_6 - intron 12034964-12035191 asmbl_48780 scaffold_6 - retained_intron 12034964-12035191 asmbl_48779 // Retained and Spliced Intron # retained_intron 12053399-12053576 (orient:-) max_ev_support = 2 # spliced_intron 12053399-12053576 (orient:-) max_ev_support = 2 scaffold_6 - intron 12053399-12053576 asmbl_48784 scaffold_6 - retained_intron 12053399-12053576 asmbl_48783 // Retained and Spliced Intron # retained_intron 12087982-12088116 (orient:-) max_ev_support = 2 # spliced_intron 12087982-12088116 (orient:-) max_ev_support = 1 scaffold_6 - intron 12087982-12088116 asmbl_48793,asmbl_48794 scaffold_6 - retained_intron 12087982-12088116 asmbl_48792,asmbl_48795 // Exon Skipping and Retention # skipped_exon 12090541-12092555 (orient:-) max_ev_support = 2 # retained_exon 12092341-12092391 (orient:-) max_ev_support = 1 scaffold_6 - retained_exons 12092341-12092391 asmbl_48797 scaffold_6 - intron_skips_exon 12090541-12092555 asmbl_48796 // Retained and Spliced Intron # retained_intron 12413720-12414317 (orient:-) max_ev_support = 3 # spliced_intron 12413720-12414317 (orient:-) max_ev_support = 1 scaffold_6 - intron 12413720-12414317 asmbl_48804 scaffold_6 - retained_intron 12413720-12414317 asmbl_48801,asmbl_48802,asmbl_48803,asmbl_48805 // Retained and Spliced Intron # retained_intron 12415798-12415973 (orient:-) max_ev_support = 3 # spliced_intron 12415798-12415973 (orient:-) max_ev_support = 1 scaffold_6 - intron 12415798-12415973 asmbl_48805 scaffold_6 - retained_intron 12415798-12415973 asmbl_48801,asmbl_48802,asmbl_48803,asmbl_48804 // Exon Skipping and Retention # skipped_exon 12520208-12521211 (orient:-) max_ev_support = 1 # retained_exon 12520880-12521077 (orient:-) max_ev_support = 2 scaffold_6 - retained_exons 12520880-12521077 asmbl_48814 scaffold_6 - intron_skips_exon 12520208-12521211 asmbl_48817 // Exon Skipping and Retention # skipped_exon 12550525-12553416 (orient:-) max_ev_support = 1 # retained_exon 12551792-12552239 (orient:-) max_ev_support = 1 scaffold_6 - retained_exons 12551792-12551883,12552118-12552239 asmbl_48825 scaffold_6 - intron_skips_exon 12550525-12553416 asmbl_48827,asmbl_48829 // Retained and Spliced Intron # retained_intron 12552240-12553416 (orient:-) max_ev_support = 1 # spliced_intron 12552240-12553416 (orient:-) max_ev_support = 1 scaffold_6 - intron 12552240-12553416 asmbl_48825 scaffold_6 - retained_intron 12552240-12553416 asmbl_48826,asmbl_48828 // Retained and Spliced Intron # retained_intron 12554228-12554438 (orient:-) max_ev_support = 1 # spliced_intron 12554228-12554438 (orient:-) max_ev_support = 1 scaffold_6 - intron 12554228-12554438 asmbl_48825,asmbl_48826,asmbl_48827,asmbl_48828,asmbl_48829 scaffold_6 - retained_intron 12554228-12554438 asmbl_48830 // Retained and Spliced Intron # retained_intron 12628524-12628614 (orient:-) max_ev_support = 1 # spliced_intron 12628524-12628614 (orient:-) max_ev_support = 3 scaffold_6 - intron 12628524-12628614 asmbl_48835,asmbl_48836,asmbl_48838 scaffold_6 - retained_intron 12628524-12628614 asmbl_48839 // Retained and Spliced Intron # retained_intron 12990908-12991437 (orient:-) max_ev_support = 2 # spliced_intron 12990908-12991437 (orient:-) max_ev_support = 2 scaffold_6 - intron 12990908-12991437 asmbl_48856,asmbl_48859 scaffold_6 - retained_intron 12990908-12991437 asmbl_48857,asmbl_48858 // Retained and Spliced Intron # retained_intron 12991556-12992335 (orient:-) max_ev_support = 2 # spliced_intron 12991556-12992335 (orient:-) max_ev_support = 2 scaffold_6 - intron 12991556-12992335 asmbl_48856 scaffold_6 - retained_intron 12991556-12992335 asmbl_48858 // Retained and Spliced Intron # retained_intron 12992093-12992335 (orient:-) max_ev_support = 2 # spliced_intron 12992093-12992335 (orient:-) max_ev_support = 2 scaffold_6 - intron 12992093-12992335 asmbl_48857,asmbl_48859 scaffold_6 - retained_intron 12992093-12992335 asmbl_48858 // Retained and Spliced Intron # retained_intron 13005188-13005430 (orient:-) max_ev_support = 3 # spliced_intron 13005188-13005430 (orient:-) max_ev_support = 2 scaffold_6 - intron 13005188-13005430 asmbl_48861 scaffold_6 - retained_intron 13005188-13005430 asmbl_48860 // Retained and Spliced Intron # retained_intron 12999743-13000120 (orient:-) max_ev_support = 1 # spliced_intron 12999743-13000120 (orient:-) max_ev_support = 1 scaffold_6 - intron 12999743-13000120 asmbl_48864 scaffold_6 - retained_intron 12999743-13000120 asmbl_48863,asmbl_48866,asmbl_48867,asmbl_48868 // Retained and Spliced Intron # retained_intron 13000458-13000538 (orient:-) max_ev_support = 1 # spliced_intron 13000458-13000538 (orient:-) max_ev_support = 2 scaffold_6 - intron 13000458-13000538 asmbl_48856,asmbl_48857,asmbl_48858,asmbl_48859,asmbl_48865,asmbl_48867,asmbl_48868 scaffold_6 - retained_intron 13000458-13000538 asmbl_48863,asmbl_48864,asmbl_48866 // Retained and Spliced Intron # retained_intron 12999352-12999538 (orient:-) max_ev_support = 1 # spliced_intron 12999352-12999538 (orient:-) max_ev_support = 1 scaffold_6 - intron 12999352-12999538 asmbl_48863,asmbl_48864,asmbl_48868 scaffold_6 - retained_intron 12999352-12999538 asmbl_48866,asmbl_48867 // Exon Skipping and Retention # skipped_exon 13059727-13060614 (orient:-) max_ev_support = 1 # retained_exon 13060364-13060448 (orient:-) max_ev_support = 2 scaffold_6 - retained_exons 13060364-13060448 asmbl_48870,asmbl_48872 scaffold_6 - intron_skips_exon 13059727-13060614 asmbl_48871 // Retained and Spliced Intron # retained_intron 13064215-13064365 (orient:-) max_ev_support = 2 # spliced_intron 13064215-13064365 (orient:-) max_ev_support = 1 scaffold_6 - intron 13064215-13064365 asmbl_48872 scaffold_6 - retained_intron 13064215-13064365 asmbl_48870,asmbl_48871,asmbl_48873 // Exon Skipping and Retention # skipped_exon 13132632-13134965 (orient:-) max_ev_support = 3 # retained_exon 13133948-13134017 (orient:-) max_ev_support = 2 scaffold_6 - retained_exons 13133948-13134017 asmbl_48880 scaffold_6 - intron_skips_exon 13132632-13134965 asmbl_48879 // Retained and Spliced Intron # retained_intron 13167852-13167934 (orient:-) max_ev_support = 2 # spliced_intron 13167852-13167934 (orient:-) max_ev_support = 1 scaffold_6 - intron 13167852-13167934 asmbl_48887,asmbl_48888 scaffold_6 - retained_intron 13167852-13167934 asmbl_48883,asmbl_48889 // Retained and Spliced Intron # retained_intron 13167852-13167977 (orient:-) max_ev_support = 2 # spliced_intron 13167852-13167977 (orient:-) max_ev_support = 2 scaffold_6 - intron 13167852-13167977 asmbl_48884,asmbl_48890 scaffold_6 - retained_intron 13167852-13167977 asmbl_48883,asmbl_48889 // Retained and Spliced Intron # retained_intron 13178612-13178919 (orient:-) max_ev_support = 3 # spliced_intron 13178612-13178919 (orient:-) max_ev_support = 2 scaffold_6 - intron 13178612-13178919 asmbl_48894 scaffold_6 - retained_intron 13178612-13178919 asmbl_48893 // Exon Skipping and Retention # skipped_exon 13249787-13250829 (orient:-) max_ev_support = 1 # retained_exon 13250309-13250661 (orient:-) max_ev_support = 1 scaffold_6 - retained_exons 13250309-13250388,13250578-13250661 asmbl_48901 scaffold_6 - intron_skips_exon 13249787-13250829 asmbl_48902 // Retained and Spliced Intron # retained_intron 13246578-13246726 (orient:-) max_ev_support = 1 # spliced_intron 13246578-13246726 (orient:-) max_ev_support = 1 scaffold_6 - intron 13246578-13246726 asmbl_48901,asmbl_48902 scaffold_6 - retained_intron 13246578-13246726 asmbl_48903 // Retained and Spliced Intron # retained_intron 13573595-13573738 (orient:-) max_ev_support = 3 # spliced_intron 13573595-13573738 (orient:-) max_ev_support = 3 scaffold_6 - intron 13573595-13573738 asmbl_48914,asmbl_48915,asmbl_48916,asmbl_48918 scaffold_6 - retained_intron 13573595-13573738 asmbl_48913 // Retained and Spliced Intron # retained_intron 13573776-13573887 (orient:-) max_ev_support = 3 # spliced_intron 13573776-13573887 (orient:-) max_ev_support = 3 scaffold_6 - intron 13573776-13573887 asmbl_48914,asmbl_48915,asmbl_48916,asmbl_48917 scaffold_6 - retained_intron 13573776-13573887 asmbl_48913,asmbl_48918 // Retained and Spliced Intron # retained_intron 13573940-13574663 (orient:-) max_ev_support = 5 # spliced_intron 13573940-13574663 (orient:-) max_ev_support = 3 scaffold_6 - intron 13573940-13574663 asmbl_48914,asmbl_48915,asmbl_48916,asmbl_48917 scaffold_6 - retained_intron 13573940-13574663 asmbl_48913 // Retained and Spliced Intron # retained_intron 13574733-13575353 (orient:-) max_ev_support = 3 # spliced_intron 13574733-13575353 (orient:-) max_ev_support = 3 scaffold_6 - intron 13574733-13575353 asmbl_48914,asmbl_48915,asmbl_48916 scaffold_6 - retained_intron 13574733-13575353 asmbl_48913,asmbl_48917 // Retained and Spliced Intron # retained_intron 13575827-13577850 (orient:-) max_ev_support = 2 # spliced_intron 13575827-13577850 (orient:-) max_ev_support = 1 scaffold_6 - intron 13575827-13577850 asmbl_48916 scaffold_6 - retained_intron 13575827-13577850 asmbl_48914 // Retained and Spliced Intron # retained_intron 13577498-13577850 (orient:-) max_ev_support = 1 # spliced_intron 13577498-13577850 (orient:-) max_ev_support = 1 scaffold_6 - intron 13577498-13577850 asmbl_48913,asmbl_48915 scaffold_6 - retained_intron 13577498-13577850 asmbl_48914 // Retained and Spliced Intron # retained_intron 13657677-13658079 (orient:-) max_ev_support = 2 # spliced_intron 13657677-13658079 (orient:-) max_ev_support = 1 scaffold_6 - intron 13657677-13658079 asmbl_48930 scaffold_6 - retained_intron 13657677-13658079 asmbl_48927 // Retained and Spliced Intron # retained_intron 13657677-13658201 (orient:-) max_ev_support = 2 # spliced_intron 13657677-13658201 (orient:-) max_ev_support = 2 scaffold_6 - intron 13657677-13658201 asmbl_48928 scaffold_6 - retained_intron 13657677-13658201 asmbl_48927 // Retained and Spliced Intron # retained_intron 13657305-13657555 (orient:-) max_ev_support = 1 # spliced_intron 13657305-13657555 (orient:-) max_ev_support = 2 scaffold_6 - intron 13657305-13657555 asmbl_48927,asmbl_48928,asmbl_48930 scaffold_6 - retained_intron 13657305-13657555 asmbl_48931 // Retained and Spliced Intron # retained_intron 13710244-13710366 (orient:-) max_ev_support = 1 # spliced_intron 13710244-13710366 (orient:-) max_ev_support = 2 scaffold_6 - intron 13710244-13710366 asmbl_48939 scaffold_6 - retained_intron 13710244-13710366 asmbl_48940 // Retained and Spliced Intron # retained_intron 13726449-13726589 (orient:-) max_ev_support = 2 # spliced_intron 13726449-13726589 (orient:-) max_ev_support = 3 scaffold_6 - intron 13726449-13726589 asmbl_48944 scaffold_6 - retained_intron 13726449-13726589 asmbl_48945 // Retained and Spliced Intron # retained_intron 13877179-13877346 (orient:-) max_ev_support = 1 # spliced_intron 13877179-13877346 (orient:-) max_ev_support = 2 scaffold_6 - intron 13877179-13877346 asmbl_48948 scaffold_6 - retained_intron 13877179-13877346 asmbl_48949 // Retained and Spliced Intron # retained_intron 13919016-13919128 (orient:-) max_ev_support = 2 # spliced_intron 13919016-13919128 (orient:-) max_ev_support = 2 scaffold_6 - intron 13919016-13919128 asmbl_48954 scaffold_6 - retained_intron 13919016-13919128 asmbl_48955,asmbl_48960 // Retained and Spliced Intron # retained_intron 13919016-13919162 (orient:-) max_ev_support = 2 # spliced_intron 13919016-13919162 (orient:-) max_ev_support = 1 scaffold_6 - intron 13919016-13919162 asmbl_48958 scaffold_6 - retained_intron 13919016-13919162 asmbl_48955,asmbl_48960 // Retained and Spliced Intron # retained_intron 13917524-13917641 (orient:-) max_ev_support = 1 # spliced_intron 13917524-13917641 (orient:-) max_ev_support = 2 scaffold_6 - intron 13917524-13917641 asmbl_48954,asmbl_48955,asmbl_48959 scaffold_6 - retained_intron 13917524-13917641 asmbl_48958,asmbl_48960 // Retained and Spliced Intron # retained_intron 13983939-13984518 (orient:-) max_ev_support = 2 # spliced_intron 13983939-13984518 (orient:-) max_ev_support = 2 scaffold_6 - intron 13983939-13984518 asmbl_48969,asmbl_48970,asmbl_48974 scaffold_6 - retained_intron 13983939-13984518 asmbl_48968 // Retained and Spliced Intron # retained_intron 13984619-13985071 (orient:-) max_ev_support = 3 # spliced_intron 13984619-13985071 (orient:-) max_ev_support = 2 scaffold_6 - intron 13984619-13985071 asmbl_48970,asmbl_48974 scaffold_6 - retained_intron 13984619-13985071 asmbl_48968,asmbl_48969 // Retained and Spliced Intron # retained_intron 13988163-13988265 (orient:-) max_ev_support = 2 # spliced_intron 13988163-13988265 (orient:-) max_ev_support = 1 scaffold_6 - intron 13988163-13988265 asmbl_48974 scaffold_6 - retained_intron 13988163-13988265 asmbl_48970 // Retained and Spliced Intron # retained_intron 14179224-14179390 (orient:-) max_ev_support = 1 # spliced_intron 14179224-14179390 (orient:-) max_ev_support = 2 scaffold_6 - intron 14179224-14179390 asmbl_48990 scaffold_6 - retained_intron 14179224-14179390 asmbl_48993 // Retained and Spliced Intron # retained_intron 14252463-14253506 (orient:-) max_ev_support = 3 # spliced_intron 14252463-14253506 (orient:-) max_ev_support = 1 scaffold_6 - intron 14252463-14253506 asmbl_48997 scaffold_6 - retained_intron 14252463-14253506 asmbl_48996 // Retained and Spliced Intron # retained_intron 14512780-14513103 (orient:-) max_ev_support = 2 # spliced_intron 14512780-14513103 (orient:-) max_ev_support = 1 scaffold_6 - intron 14512780-14513103 asmbl_49013 scaffold_6 - retained_intron 14512780-14513103 asmbl_49011 // Exon Skipping and Retention # skipped_exon 14622505-14623328 (orient:-) max_ev_support = 1 # retained_exon 14622605-14623228 (orient:-) max_ev_support = 2 scaffold_6 - retained_exons 14622605-14623228 asmbl_49015 scaffold_6 - intron_skips_exon 14622505-14623328 asmbl_49017 // Retained and Spliced Intron # retained_intron 14639697-14639780 (orient:-) max_ev_support = 1 # spliced_intron 14639697-14639780 (orient:-) max_ev_support = 2 scaffold_6 - intron 14639697-14639780 asmbl_49020 scaffold_6 - retained_intron 14639697-14639780 asmbl_49021 // Retained and Spliced Intron # retained_intron 15087115-15087248 (orient:-) max_ev_support = 2 # spliced_intron 15087115-15087248 (orient:-) max_ev_support = 3 scaffold_6 - intron 15087115-15087248 asmbl_49046,asmbl_49050 scaffold_6 - retained_intron 15087115-15087248 asmbl_49047 // Retained and Spliced Intron # retained_intron 15759616-15760387 (orient:-) max_ev_support = 1 # spliced_intron 15759616-15760387 (orient:-) max_ev_support = 2 scaffold_6 - intron 15759616-15760387 asmbl_49082,asmbl_49084,asmbl_49085 scaffold_6 - retained_intron 15759616-15760387 asmbl_49081,asmbl_49086 // Retained and Spliced Intron # retained_intron 15761296-15762180 (orient:-) max_ev_support = 3 # spliced_intron 15761296-15762180 (orient:-) max_ev_support = 2 scaffold_6 - intron 15761296-15762180 asmbl_49082,asmbl_49084,asmbl_49085,asmbl_49086 scaffold_6 - retained_intron 15761296-15762180 asmbl_49081 // Retained and Spliced Intron # retained_intron 15762366-15762448 (orient:-) max_ev_support = 1 # spliced_intron 15762366-15762448 (orient:-) max_ev_support = 2 scaffold_6 - intron 15762366-15762448 asmbl_49082,asmbl_49086 scaffold_6 - retained_intron 15762366-15762448 asmbl_49081,asmbl_49084,asmbl_49085 // Retained and Spliced Intron # retained_intron 15762521-15764191 (orient:-) max_ev_support = 1 # spliced_intron 15762521-15764191 (orient:-) max_ev_support = 2 scaffold_6 - intron 15762521-15764191 asmbl_49082,asmbl_49086 scaffold_6 - retained_intron 15762521-15764191 asmbl_49081,asmbl_49084,asmbl_49085 // Retained and Spliced Intron # retained_intron 15760487-15760603 (orient:-) max_ev_support = 2 # spliced_intron 15760487-15760603 (orient:-) max_ev_support = 2 scaffold_6 - intron 15760487-15760603 asmbl_49081,asmbl_49082,asmbl_49084,asmbl_49085,asmbl_49086 scaffold_6 - retained_intron 15760487-15760603 asmbl_49083 // Retained and Spliced Intron # retained_intron 16104047-16104276 (orient:-) max_ev_support = 1 # spliced_intron 16104047-16104276 (orient:-) max_ev_support = 1 scaffold_6 - intron 16104047-16104276 asmbl_49103 scaffold_6 - retained_intron 16104047-16104276 asmbl_49104 // Retained and Spliced Intron # retained_intron 16272558-16272579 (orient:-) max_ev_support = 2 # spliced_intron 16272558-16272579 (orient:-) max_ev_support = 1 scaffold_6 - intron 16272558-16272579 asmbl_49107 scaffold_6 - retained_intron 16272558-16272579 asmbl_49106 // Exon Skipping and Retention # skipped_exon 16595070-16596107 (orient:-) max_ev_support = 2 # retained_exon 16595769-16595889 (orient:-) max_ev_support = 2 scaffold_6 - retained_exons 16595769-16595889 asmbl_49143,asmbl_49145 scaffold_6 - intron_skips_exon 16595070-16596107 asmbl_49144 // Exon Skipping and Retention # skipped_exon 16620658-16622847 (orient:-) max_ev_support = 2 # retained_exon 16621164-16621258 (orient:-) max_ev_support = 2 scaffold_6 - retained_exons 16621164-16621258 asmbl_49150 scaffold_6 - intron_skips_exon 16620658-16622847 asmbl_49149 // Retained and Spliced Intron # retained_intron 16876680-16876794 (orient:-) max_ev_support = 2 # spliced_intron 16876680-16876794 (orient:-) max_ev_support = 2 scaffold_6 - intron 16876680-16876794 asmbl_49170 scaffold_6 - retained_intron 16876680-16876794 asmbl_49171 // Retained and Spliced Intron # retained_intron 16876680-16877084 (orient:-) max_ev_support = 2 # spliced_intron 16876680-16877084 (orient:-) max_ev_support = 2 scaffold_6 - intron 16876680-16877084 asmbl_49169 scaffold_6 - retained_intron 16876680-16877084 asmbl_49171 // Exon Skipping and Retention # skipped_exon 16887339-16888617 (orient:-) max_ev_support = 3 # retained_exon 16888019-16888129 (orient:-) max_ev_support = 3 scaffold_6 - retained_exons 16888019-16888129 asmbl_49174 scaffold_6 - intron_skips_exon 16887339-16888617 asmbl_49175 // Exon Skipping and Retention # skipped_exon 16887339-16888534 (orient:-) max_ev_support = 3 # retained_exon 16888019-16888129 (orient:-) max_ev_support = 3 scaffold_6 - retained_exons 16888019-16888129 asmbl_49174 scaffold_6 - intron_skips_exon 16887339-16888534 asmbl_49176 // Retained and Spliced Intron # retained_intron 17186531-17186619 (orient:-) max_ev_support = 2 # spliced_intron 17186531-17186619 (orient:-) max_ev_support = 3 scaffold_6 - intron 17186531-17186619 asmbl_49180,asmbl_49181 scaffold_6 - retained_intron 17186531-17186619 asmbl_49182 // Exon Skipping and Retention # skipped_exon 17645566-17647422 (orient:-) max_ev_support = 1 # retained_exon 17647068-17647288 (orient:-) max_ev_support = 1 scaffold_6 - retained_exons 17647068-17647288 asmbl_49194 scaffold_6 - intron_skips_exon 17645566-17647422 asmbl_49195 // Exon Skipping and Retention # skipped_exon 17645170-17647067 (orient:-) max_ev_support = 1 # retained_exon 17645345-17645565 (orient:-) max_ev_support = 1 scaffold_6 - retained_exons 17645345-17645565 asmbl_49195 scaffold_6 - intron_skips_exon 17645170-17647067 asmbl_49194 // Retained and Spliced Intron # retained_intron 17798851-17799282 (orient:-) max_ev_support = 1 # spliced_intron 17798851-17799282 (orient:-) max_ev_support = 2 scaffold_6 - intron 17798851-17799282 asmbl_49198 scaffold_6 - retained_intron 17798851-17799282 asmbl_49201 // Retained and Spliced Intron # retained_intron 17799090-17799282 (orient:-) max_ev_support = 1 # spliced_intron 17799090-17799282 (orient:-) max_ev_support = 3 scaffold_6 - intron 17799090-17799282 asmbl_49197 scaffold_6 - retained_intron 17799090-17799282 asmbl_49201 // Retained and Spliced Intron # retained_intron 17881666-17881817 (orient:-) max_ev_support = 2 # spliced_intron 17881666-17881817 (orient:-) max_ev_support = 2 scaffold_6 - intron 17881666-17881817 asmbl_49210,asmbl_49213,asmbl_49214,asmbl_49215 scaffold_6 - retained_intron 17881666-17881817 asmbl_49211 // Retained and Spliced Intron # retained_intron 17883201-17883316 (orient:-) max_ev_support = 2 # spliced_intron 17883201-17883316 (orient:-) max_ev_support = 2 scaffold_6 - intron 17883201-17883316 asmbl_49210,asmbl_49214,asmbl_49215 scaffold_6 - retained_intron 17883201-17883316 asmbl_49212 // Retained and Spliced Intron # retained_intron 18025101-18025221 (orient:-) max_ev_support = 1 # spliced_intron 18025101-18025221 (orient:-) max_ev_support = 2 scaffold_6 - intron 18025101-18025221 asmbl_49221 scaffold_6 - retained_intron 18025101-18025221 asmbl_49222 // Exon Skipping and Retention # skipped_exon 18047904-18050496 (orient:-) max_ev_support = 2 # retained_exon 18048348-18048443 (orient:-) max_ev_support = 2 scaffold_6 - retained_exons 18048348-18048443 asmbl_49223 scaffold_6 - intron_skips_exon 18047904-18050496 asmbl_49224 // Exon Skipping and Retention # skipped_exon 18050591-18052244 (orient:-) max_ev_support = 1 # retained_exon 18051135-18051319 (orient:-) max_ev_support = 2 scaffold_6 - retained_exons 18051135-18051319 asmbl_49223,asmbl_49224,asmbl_49225 scaffold_6 - intron_skips_exon 18050591-18052244 asmbl_49226 // Exon Skipping and Retention # skipped_exon 18172535-18174830 (orient:-) max_ev_support = 2 # retained_exon 18174352-18174423 (orient:-) max_ev_support = 1 scaffold_6 - retained_exons 18174352-18174423 asmbl_49229 scaffold_6 - intron_skips_exon 18172535-18174830 asmbl_49228 // Exon Skipping and Retention # skipped_exon 18210334-18211757 (orient:-) max_ev_support = 1 # retained_exon 18210869-18210989 (orient:-) max_ev_support = 1 scaffold_6 - retained_exons 18210869-18210989 asmbl_49230 scaffold_6 - intron_skips_exon 18210334-18211757 asmbl_49231 // Exon Skipping and Retention # skipped_exon 18209816-18210868 (orient:-) max_ev_support = 1 # retained_exon 18210213-18210333 (orient:-) max_ev_support = 1 scaffold_6 - retained_exons 18210213-18210333 asmbl_49231 scaffold_6 - intron_skips_exon 18209816-18210868 asmbl_49230 // Retained and Spliced Intron # retained_intron 18784543-18784568 (orient:-) max_ev_support = 4 # spliced_intron 18784543-18784568 (orient:-) max_ev_support = 1 scaffold_6 - intron 18784543-18784568 asmbl_49282 scaffold_6 - retained_intron 18784543-18784568 asmbl_49281 // Retained and Spliced Intron # retained_intron 18883925-18883950 (orient:-) max_ev_support = 2 # spliced_intron 18883925-18883950 (orient:-) max_ev_support = 1 scaffold_6 - intron 18883925-18883950 asmbl_49284 scaffold_6 - retained_intron 18883925-18883950 asmbl_49283 // Retained and Spliced Intron # retained_intron 18911268-18911384 (orient:-) max_ev_support = 2 # spliced_intron 18911268-18911384 (orient:-) max_ev_support = 1 scaffold_6 - intron 18911268-18911384 asmbl_49287 scaffold_6 - retained_intron 18911268-18911384 asmbl_49286,asmbl_49288 // Exon Skipping and Retention # skipped_exon 18916887-18917456 (orient:-) max_ev_support = 1 # retained_exon 18917077-18917158 (orient:-) max_ev_support = 3 scaffold_6 - retained_exons 18917077-18917158 asmbl_49289 scaffold_6 - intron_skips_exon 18916887-18917456 asmbl_49290,asmbl_49291 // Exon Skipping and Retention # skipped_exon 18916513-18917076 (orient:-) max_ev_support = 3 # retained_exon 18916805-18916886 (orient:-) max_ev_support = 1 scaffold_6 - retained_exons 18916805-18916886 asmbl_49290,asmbl_49291 scaffold_6 - intron_skips_exon 18916513-18917076 asmbl_49289 // Retained and Spliced Intron # retained_intron 18922318-18922547 (orient:-) max_ev_support = 3 # spliced_intron 18922318-18922547 (orient:-) max_ev_support = 2 scaffold_6 - intron 18922318-18922547 asmbl_49293 scaffold_6 - retained_intron 18922318-18922547 asmbl_49292 // Exon Skipping and Retention # skipped_exon 18922318-18922987 (orient:-) max_ev_support = 1 # retained_exon 18922548-18922655 (orient:-) max_ev_support = 2 scaffold_6 - retained_exons 18922548-18922655 asmbl_49293 scaffold_6 - intron_skips_exon 18922318-18922987 asmbl_49294 // Exon Skipping and Retention # skipped_exon 19115049-19115680 (orient:-) max_ev_support = 2 # retained_exon 19115124-19115246 (orient:-) max_ev_support = 3 scaffold_6 - retained_exons 19115124-19115246 asmbl_49300,asmbl_49301,asmbl_49304 scaffold_6 - intron_skips_exon 19115049-19115680 asmbl_49302,asmbl_49303 // Exon Skipping and Retention # skipped_exon 19115800-19116613 (orient:-) max_ev_support = 3 # retained_exon 19116136-19116266 (orient:-) max_ev_support = 3 scaffold_6 - retained_exons 19116136-19116266 asmbl_49300 scaffold_6 - intron_skips_exon 19115800-19116613 asmbl_49301 // Exon Skipping and Retention # skipped_exon 19115800-19116587 (orient:-) max_ev_support = 1 # retained_exon 19116136-19116266 (orient:-) max_ev_support = 3 scaffold_6 - retained_exons 19116136-19116266 asmbl_49300 scaffold_6 - intron_skips_exon 19115800-19116587 asmbl_49303 // Retained and Spliced Intron # retained_intron 15832-15983 (orient:-) max_ev_support = 1 # spliced_intron 15832-15983 (orient:-) max_ev_support = 1 scaffold_60 - intron 15832-15983 asmbl_49457 scaffold_60 - retained_intron 15832-15983 asmbl_49458 // Exon Skipping and Retention # skipped_exon 1472-1924 (orient:-) max_ev_support = 1 # retained_exon 1629-1880 (orient:-) max_ev_support = 1 scaffold_643 - retained_exons 1629-1724,1802-1880 asmbl_49488 scaffold_643 - intron_skips_exon 1472-1924 asmbl_49489,asmbl_49490 // Retained and Spliced Intron # retained_intron 1289-1370 (orient:-) max_ev_support = 1 # spliced_intron 1289-1370 (orient:-) max_ev_support = 1 scaffold_643 - intron 1289-1370 asmbl_49488,asmbl_49490 scaffold_643 - retained_intron 1289-1370 asmbl_49489,asmbl_49491 // Retained and Spliced Intron # retained_intron 1606-1628 (orient:-) max_ev_support = 1 # spliced_intron 1606-1628 (orient:-) max_ev_support = 1 scaffold_643 - intron 1606-1628 asmbl_49488 scaffold_643 - retained_intron 1606-1628 asmbl_49491 // Retained and Spliced Intron # retained_intron 4845-4952 (orient:-) max_ev_support = 2 # spliced_intron 4845-4952 (orient:-) max_ev_support = 2 scaffold_646 - intron 4845-4952 asmbl_49493,asmbl_49494 scaffold_646 - retained_intron 4845-4952 asmbl_49492 // Retained and Spliced Intron # retained_intron 4980-5090 (orient:-) max_ev_support = 2 # spliced_intron 4980-5090 (orient:-) max_ev_support = 2 scaffold_646 - intron 4980-5090 asmbl_49493 scaffold_646 - retained_intron 4980-5090 asmbl_49492,asmbl_49494 // Retained and Spliced Intron # retained_intron 6653-6754 (orient:-) max_ev_support = 2 # spliced_intron 6653-6754 (orient:-) max_ev_support = 1 scaffold_67 - intron 6653-6754 asmbl_49512 scaffold_67 - retained_intron 6653-6754 asmbl_49511 // Exon Skipping and Retention # skipped_exon 267889-269120 (orient:+) max_ev_support = 1 # retained_exon 268750-268818 (orient:+) max_ev_support = 1 scaffold_7 + retained_exons 268750-268818 asmbl_49542,asmbl_49543,asmbl_49544 scaffold_7 + intron_skips_exon 267889-269120 asmbl_49545 // Retained and Spliced Intron # retained_intron 271299-271404 (orient:+) max_ev_support = 2 # spliced_intron 271299-271404 (orient:+) max_ev_support = 1 scaffold_7 + intron 271299-271404 asmbl_49544 scaffold_7 + retained_intron 271299-271404 asmbl_49542,asmbl_49543,asmbl_49545 // Retained and Spliced Intron # retained_intron 271564-271669 (orient:+) max_ev_support = 2 # spliced_intron 271564-271669 (orient:+) max_ev_support = 1 scaffold_7 + intron 271564-271669 asmbl_49543,asmbl_49544,asmbl_49545 scaffold_7 + retained_intron 271564-271669 asmbl_49542 // Retained and Spliced Intron # retained_intron 289521-289547 (orient:+) max_ev_support = 1 # spliced_intron 289521-289547 (orient:+) max_ev_support = 1 scaffold_7 + intron 289521-289547 asmbl_49551 scaffold_7 + retained_intron 289521-289547 asmbl_49549,asmbl_49550,asmbl_49552 // Exon Skipping and Retention # skipped_exon 689261-689739 (orient:+) max_ev_support = 1 # retained_exon 689481-689645 (orient:+) max_ev_support = 2 scaffold_7 + retained_exons 689481-689645 asmbl_49556 scaffold_7 + intron_skips_exon 689261-689739 asmbl_49557,asmbl_49558 // Retained and Spliced Intron # retained_intron 817670-817822 (orient:+) max_ev_support = 1 # spliced_intron 817670-817822 (orient:+) max_ev_support = 2 scaffold_7 + intron 817670-817822 asmbl_49562,asmbl_49564,asmbl_49567 scaffold_7 + retained_intron 817670-817822 asmbl_49565,asmbl_49566 // Retained and Spliced Intron # retained_intron 1034813-1034848 (orient:+) max_ev_support = 1 # spliced_intron 1034813-1034848 (orient:+) max_ev_support = 1 scaffold_7 + intron 1034813-1034848 asmbl_49574 scaffold_7 + retained_intron 1034813-1034848 asmbl_49575 // Exon Skipping and Retention # skipped_exon 1224787-1225948 (orient:+) max_ev_support = 2 # retained_exon 1225105-1225206 (orient:+) max_ev_support = 2 scaffold_7 + retained_exons 1225105-1225206 asmbl_49586 scaffold_7 + intron_skips_exon 1224787-1225948 asmbl_49587 // Exon Skipping and Retention # skipped_exon 1235897-1237950 (orient:+) max_ev_support = 2 # retained_exon 1236329-1236502 (orient:+) max_ev_support = 3 scaffold_7 + retained_exons 1236329-1236502 asmbl_49588,asmbl_49590,asmbl_49592,asmbl_49593 scaffold_7 + intron_skips_exon 1235897-1237950 asmbl_49600 // Exon Skipping and Retention # skipped_exon 1235897-1236590 (orient:+) max_ev_support = 1 # retained_exon 1236329-1236502 (orient:+) max_ev_support = 3 scaffold_7 + retained_exons 1236329-1236502 asmbl_49588,asmbl_49590,asmbl_49592,asmbl_49593 scaffold_7 + intron_skips_exon 1235897-1236590 asmbl_49603,asmbl_49604,asmbl_49607 // Retained and Spliced Intron # retained_intron 1236503-1236590 (orient:+) max_ev_support = 2 # spliced_intron 1236503-1236590 (orient:+) max_ev_support = 1 scaffold_7 + intron 1236503-1236590 asmbl_49588,asmbl_49590,asmbl_49592,asmbl_49593,asmbl_49605,asmbl_49606 scaffold_7 + retained_intron 1236503-1236590 asmbl_49589,asmbl_49594,asmbl_49601,asmbl_49602 // Retained and Spliced Intron # retained_intron 1235216-1235301 (orient:+) max_ev_support = 1 # spliced_intron 1235216-1235301 (orient:+) max_ev_support = 1 scaffold_7 + intron 1235216-1235301 asmbl_49592 scaffold_7 + retained_intron 1235216-1235301 asmbl_49593,asmbl_49603 // Retained and Spliced Intron # retained_intron 1235347-1235447 (orient:+) max_ev_support = 1 # spliced_intron 1235347-1235447 (orient:+) max_ev_support = 1 scaffold_7 + intron 1235347-1235447 asmbl_49592 scaffold_7 + retained_intron 1235347-1235447 asmbl_49593,asmbl_49603 // Exon Skipping and Retention # skipped_exon 1231311-1232985 (orient:+) max_ev_support = 2 # retained_exon 1231348-1231431 (orient:+) max_ev_support = 2 scaffold_7 + retained_exons 1231348-1231431 asmbl_49594,asmbl_49600,asmbl_49602,asmbl_49603,asmbl_49605,asmbl_49606,asmbl_49607 scaffold_7 + intron_skips_exon 1231311-1232985 asmbl_49599,asmbl_49604 // Retained and Spliced Intron # retained_intron 1233710-1233915 (orient:+) max_ev_support = 2 # spliced_intron 1233710-1233915 (orient:+) max_ev_support = 1 scaffold_7 + intron 1233710-1233915 asmbl_49603 scaffold_7 + retained_intron 1233710-1233915 asmbl_49595,asmbl_49599 // Exon Skipping and Retention # skipped_exon 1229953-1231347 (orient:+) max_ev_support = 2 # retained_exon 1231239-1231310 (orient:+) max_ev_support = 2 scaffold_7 + retained_exons 1231239-1231310 asmbl_49599,asmbl_49604 scaffold_7 + intron_skips_exon 1229953-1231347 asmbl_49594,asmbl_49600,asmbl_49602,asmbl_49603,asmbl_49605,asmbl_49606,asmbl_49607 // Retained and Spliced Intron # retained_intron 1235897-1236136 (orient:+) max_ev_support = 1 # spliced_intron 1235897-1236136 (orient:+) max_ev_support = 1 scaffold_7 + intron 1235897-1236136 asmbl_49605 scaffold_7 + retained_intron 1235897-1236136 asmbl_49602 // Retained and Spliced Intron # retained_intron 1235897-1236296 (orient:+) max_ev_support = 1 # spliced_intron 1235897-1236296 (orient:+) max_ev_support = 1 scaffold_7 + intron 1235897-1236296 asmbl_49606 scaffold_7 + retained_intron 1235897-1236296 asmbl_49602 // Retained and Spliced Intron # retained_intron 1235897-1236328 (orient:+) max_ev_support = 1 # spliced_intron 1235897-1236328 (orient:+) max_ev_support = 3 scaffold_7 + intron 1235897-1236328 asmbl_49588,asmbl_49589,asmbl_49590,asmbl_49592,asmbl_49593,asmbl_49594 scaffold_7 + retained_intron 1235897-1236328 asmbl_49602 // Retained and Spliced Intron # retained_intron 1235897-1236477 (orient:+) max_ev_support = 1 # spliced_intron 1235897-1236477 (orient:+) max_ev_support = 1 scaffold_7 + intron 1235897-1236477 asmbl_49601 scaffold_7 + retained_intron 1235897-1236477 asmbl_49602 // Retained and Spliced Intron # retained_intron 1235897-1236590 (orient:+) max_ev_support = 1 # spliced_intron 1235897-1236590 (orient:+) max_ev_support = 1 scaffold_7 + intron 1235897-1236590 asmbl_49603,asmbl_49604,asmbl_49607 scaffold_7 + retained_intron 1235897-1236590 asmbl_49602 // Retained and Spliced Intron # retained_intron 1235897-1237950 (orient:+) max_ev_support = 1 # spliced_intron 1235897-1237950 (orient:+) max_ev_support = 2 scaffold_7 + intron 1235897-1237950 asmbl_49600 scaffold_7 + retained_intron 1235897-1237950 asmbl_49602 // Retained and Spliced Intron # retained_intron 2490307-2490441 (orient:+) max_ev_support = 2 # spliced_intron 2490307-2490441 (orient:+) max_ev_support = 1 scaffold_7 + intron 2490307-2490441 asmbl_49647,asmbl_49648,asmbl_49649 scaffold_7 + retained_intron 2490307-2490441 asmbl_49645,asmbl_49646 // Retained and Spliced Intron # retained_intron 2490307-2490760 (orient:+) max_ev_support = 4 # spliced_intron 2490307-2490760 (orient:+) max_ev_support = 1 scaffold_7 + intron 2490307-2490760 asmbl_49650 scaffold_7 + retained_intron 2490307-2490760 asmbl_49645,asmbl_49646 // Exon Skipping and Retention # skipped_exon 2484086-2486547 (orient:+) max_ev_support = 1 # retained_exon 2485107-2485244 (orient:+) max_ev_support = 1 scaffold_7 + retained_exons 2485107-2485244 asmbl_49646 scaffold_7 + intron_skips_exon 2484086-2486547 asmbl_49645,asmbl_49647,asmbl_49650 // Retained and Spliced Intron # retained_intron 2515770-2515883 (orient:+) max_ev_support = 2 # spliced_intron 2515770-2515883 (orient:+) max_ev_support = 1 scaffold_7 + intron 2515770-2515883 asmbl_49653 scaffold_7 + retained_intron 2515770-2515883 asmbl_49652 // Retained and Spliced Intron # retained_intron 2589217-2589309 (orient:+) max_ev_support = 1 # spliced_intron 2589217-2589309 (orient:+) max_ev_support = 1 scaffold_7 + intron 2589217-2589309 asmbl_49658 scaffold_7 + retained_intron 2589217-2589309 asmbl_49659 // Retained and Spliced Intron # retained_intron 2734406-2734533 (orient:+) max_ev_support = 1 # spliced_intron 2734406-2734533 (orient:+) max_ev_support = 2 scaffold_7 + intron 2734406-2734533 asmbl_49663 scaffold_7 + retained_intron 2734406-2734533 asmbl_49664 // Retained and Spliced Intron # retained_intron 4391769-4391853 (orient:+) max_ev_support = 1 # spliced_intron 4391769-4391853 (orient:+) max_ev_support = 1 scaffold_7 + intron 4391769-4391853 asmbl_49734,asmbl_49736 scaffold_7 + retained_intron 4391769-4391853 asmbl_49733,asmbl_49735 // Exon Skipping and Retention # skipped_exon 4391931-4392703 (orient:+) max_ev_support = 1 # retained_exon 4392465-4392468 (orient:+) max_ev_support = 1 scaffold_7 + retained_exons 4392465-4392468 asmbl_49733,asmbl_49734 scaffold_7 + intron_skips_exon 4391931-4392703 asmbl_49735,asmbl_49736 // Retained and Spliced Intron # retained_intron 4544285-4544372 (orient:+) max_ev_support = 1 # spliced_intron 4544285-4544372 (orient:+) max_ev_support = 2 scaffold_7 + intron 4544285-4544372 asmbl_49744,asmbl_49746,asmbl_49747 scaffold_7 + retained_intron 4544285-4544372 asmbl_49745 // Retained and Spliced Intron # retained_intron 4545952-4546317 (orient:+) max_ev_support = 1 # spliced_intron 4545952-4546317 (orient:+) max_ev_support = 2 scaffold_7 + intron 4545952-4546317 asmbl_49744,asmbl_49745 scaffold_7 + retained_intron 4545952-4546317 asmbl_49746,asmbl_49747 // Retained and Spliced Intron # retained_intron 4544752-4545008 (orient:+) max_ev_support = 1 # spliced_intron 4544752-4545008 (orient:+) max_ev_support = 2 scaffold_7 + intron 4544752-4545008 asmbl_49744,asmbl_49745,asmbl_49746 scaffold_7 + retained_intron 4544752-4545008 asmbl_49747 // Retained and Spliced Intron # retained_intron 4545173-4545914 (orient:+) max_ev_support = 1 # spliced_intron 4545173-4545914 (orient:+) max_ev_support = 2 scaffold_7 + intron 4545173-4545914 asmbl_49744,asmbl_49745,asmbl_49746 scaffold_7 + retained_intron 4545173-4545914 asmbl_49747 // Exon Skipping and Retention # skipped_exon 4873474-4874735 (orient:+) max_ev_support = 2 # retained_exon 4873996-4874087 (orient:+) max_ev_support = 1 scaffold_7 + retained_exons 4873996-4874087 asmbl_49751 scaffold_7 + intron_skips_exon 4873474-4874735 asmbl_49749 // Retained and Spliced Intron # retained_intron 4884544-4884813 (orient:+) max_ev_support = 2 # spliced_intron 4884544-4884813 (orient:+) max_ev_support = 2 scaffold_7 + intron 4884544-4884813 asmbl_49753 scaffold_7 + retained_intron 4884544-4884813 asmbl_49752 // Retained and Spliced Intron # retained_intron 4915680-4915757 (orient:+) max_ev_support = 2 # spliced_intron 4915680-4915757 (orient:+) max_ev_support = 1 scaffold_7 + intron 4915680-4915757 asmbl_49762 scaffold_7 + retained_intron 4915680-4915757 asmbl_49759,asmbl_49761 // Retained and Spliced Intron # retained_intron 4915758-4915841 (orient:+) max_ev_support = 2 # spliced_intron 4915758-4915841 (orient:+) max_ev_support = 1 scaffold_7 + intron 4915758-4915841 asmbl_49760 scaffold_7 + retained_intron 4915758-4915841 asmbl_49759 // Retained and Spliced Intron # retained_intron 4915842-4915925 (orient:+) max_ev_support = 2 # spliced_intron 4915842-4915925 (orient:+) max_ev_support = 1 scaffold_7 + intron 4915842-4915925 asmbl_49761 scaffold_7 + retained_intron 4915842-4915925 asmbl_49759,asmbl_49762 // Retained and Spliced Intron # retained_intron 4931699-4933374 (orient:+) max_ev_support = 2 # spliced_intron 4931699-4933374 (orient:+) max_ev_support = 2 scaffold_7 + intron 4931699-4933374 asmbl_49773 scaffold_7 + retained_intron 4931699-4933374 asmbl_49766,asmbl_49767 // Retained and Spliced Intron # retained_intron 4933150-4933374 (orient:+) max_ev_support = 2 # spliced_intron 4933150-4933374 (orient:+) max_ev_support = 1 scaffold_7 + intron 4933150-4933374 asmbl_49779 scaffold_7 + retained_intron 4933150-4933374 asmbl_49766,asmbl_49767 // Retained and Spliced Intron # retained_intron 4934589-4935841 (orient:+) max_ev_support = 2 # spliced_intron 4934589-4935841 (orient:+) max_ev_support = 2 scaffold_7 + intron 4934589-4935841 asmbl_49767,asmbl_49772,asmbl_49773,asmbl_49774,asmbl_49775,asmbl_49776,asmbl_49777,asmbl_49778,asmbl_49779 scaffold_7 + retained_intron 4934589-4935841 asmbl_49766 // Exon Skipping and Retention # skipped_exon 4930791-4933374 (orient:+) max_ev_support = 2 # retained_exon 4931639-4931698 (orient:+) max_ev_support = 2 scaffold_7 + retained_exons 4931639-4931698 asmbl_49773 scaffold_7 + intron_skips_exon 4930791-4933374 asmbl_49772,asmbl_49774,asmbl_49775,asmbl_49776,asmbl_49778 // Exon Skipping and Retention # skipped_exon 4930791-4933377 (orient:+) max_ev_support = 1 # retained_exon 4931639-4931698 (orient:+) max_ev_support = 2 scaffold_7 + retained_exons 4931639-4931698 asmbl_49773 scaffold_7 + intron_skips_exon 4930791-4933377 asmbl_49777 // Retained and Spliced Intron # retained_intron 4930321-4930697 (orient:+) max_ev_support = 1 # spliced_intron 4930321-4930697 (orient:+) max_ev_support = 2 scaffold_7 + intron 4930321-4930697 asmbl_49772,asmbl_49773,asmbl_49775,asmbl_49776,asmbl_49777 scaffold_7 + retained_intron 4930321-4930697 asmbl_49774,asmbl_49778 // Exon Skipping and Retention # skipped_exon 4928728-4929215 (orient:+) max_ev_support = 2 # retained_exon 4928951-4929060 (orient:+) max_ev_support = 1 scaffold_7 + retained_exons 4928951-4929060 asmbl_49775,asmbl_49778 scaffold_7 + intron_skips_exon 4928728-4929215 asmbl_49772,asmbl_49773,asmbl_49774,asmbl_49776,asmbl_49777 // Retained and Spliced Intron # retained_intron 4936495-4936637 (orient:+) max_ev_support = 1 # spliced_intron 4936495-4936637 (orient:+) max_ev_support = 2 scaffold_7 + intron 4936495-4936637 asmbl_49766,asmbl_49767,asmbl_49772,asmbl_49773,asmbl_49774,asmbl_49775,asmbl_49777,asmbl_49778 scaffold_7 + retained_intron 4936495-4936637 asmbl_49776 // Exon Skipping and Retention # skipped_exon 5097042-5097668 (orient:+) max_ev_support = 2 # retained_exon 5097305-5097364 (orient:+) max_ev_support = 2 scaffold_7 + retained_exons 5097305-5097364 asmbl_49782 scaffold_7 + intron_skips_exon 5097042-5097668 asmbl_49781 // Retained and Spliced Intron # retained_intron 5235519-5236725 (orient:+) max_ev_support = 1 # spliced_intron 5235519-5236725 (orient:+) max_ev_support = 2 scaffold_7 + intron 5235519-5236725 asmbl_49798,asmbl_49803 scaffold_7 + retained_intron 5235519-5236725 asmbl_49797,asmbl_49802 // Exon Skipping and Retention # skipped_exon 5234496-5236725 (orient:+) max_ev_support = 1 # retained_exon 5235308-5235518 (orient:+) max_ev_support = 2 scaffold_7 + retained_exons 5235308-5235518 asmbl_49798 scaffold_7 + intron_skips_exon 5234496-5236725 asmbl_49801 // Exon Skipping and Retention # skipped_exon 5482741-5484064 (orient:+) max_ev_support = 2 # retained_exon 5483654-5483703 (orient:+) max_ev_support = 1 scaffold_7 + retained_exons 5483654-5483703 asmbl_49814 scaffold_7 + intron_skips_exon 5482741-5484064 asmbl_49813 // Exon Skipping and Retention # skipped_exon 5928121-5929865 (orient:+) max_ev_support = 3 # retained_exon 5928804-5928823 (orient:+) max_ev_support = 3 scaffold_7 + retained_exons 5928804-5928823 asmbl_49828 scaffold_7 + intron_skips_exon 5928121-5929865 asmbl_49827 // Retained and Spliced Intron # retained_intron 5928121-5928803 (orient:+) max_ev_support = 3 # spliced_intron 5928121-5928803 (orient:+) max_ev_support = 3 scaffold_7 + intron 5928121-5928803 asmbl_49828 scaffold_7 + retained_intron 5928121-5928803 asmbl_49829,asmbl_49830 // Retained and Spliced Intron # retained_intron 5928121-5929865 (orient:+) max_ev_support = 3 # spliced_intron 5928121-5929865 (orient:+) max_ev_support = 3 scaffold_7 + intron 5928121-5929865 asmbl_49827 scaffold_7 + retained_intron 5928121-5929865 asmbl_49829,asmbl_49830 // Retained and Spliced Intron # retained_intron 5928824-5929865 (orient:+) max_ev_support = 3 # spliced_intron 5928824-5929865 (orient:+) max_ev_support = 3 scaffold_7 + intron 5928824-5929865 asmbl_49828 scaffold_7 + retained_intron 5928824-5929865 asmbl_49829,asmbl_49830 // Retained and Spliced Intron # retained_intron 5927708-5928006 (orient:+) max_ev_support = 2 # spliced_intron 5927708-5928006 (orient:+) max_ev_support = 3 scaffold_7 + intron 5927708-5928006 asmbl_49827,asmbl_49828,asmbl_49829 scaffold_7 + retained_intron 5927708-5928006 asmbl_49831 // Retained and Spliced Intron # retained_intron 5927823-5928006 (orient:+) max_ev_support = 2 # spliced_intron 5927823-5928006 (orient:+) max_ev_support = 2 scaffold_7 + intron 5927823-5928006 asmbl_49830 scaffold_7 + retained_intron 5927823-5928006 asmbl_49831 // Retained and Spliced Intron # retained_intron 6205363-6205464 (orient:+) max_ev_support = 3 # spliced_intron 6205363-6205464 (orient:+) max_ev_support = 1 scaffold_7 + intron 6205363-6205464 asmbl_49853 scaffold_7 + retained_intron 6205363-6205464 asmbl_49852 // Exon Skipping and Retention # skipped_exon 7184630-7186249 (orient:+) max_ev_support = 2 # retained_exon 7184876-7184992 (orient:+) max_ev_support = 2 scaffold_7 + retained_exons 7184876-7184992 asmbl_49901,asmbl_49903 scaffold_7 + intron_skips_exon 7184630-7186249 asmbl_49902 // Exon Skipping and Retention # skipped_exon 7244469-7246065 (orient:+) max_ev_support = 2 # retained_exon 7245092-7245163 (orient:+) max_ev_support = 2 scaffold_7 + retained_exons 7245092-7245163 asmbl_49912 scaffold_7 + intron_skips_exon 7244469-7246065 asmbl_49911 // Exon Skipping and Retention # skipped_exon 7415203-7417634 (orient:+) max_ev_support = 2 # retained_exon 7416484-7417321 (orient:+) max_ev_support = 3 scaffold_7 + retained_exons 7416484-7416506,7417219-7417321 asmbl_49919 scaffold_7 + intron_skips_exon 7415203-7417634 asmbl_49920 // Exon Skipping and Retention # skipped_exon 8171087-8173613 (orient:+) max_ev_support = 2 # retained_exon 8172976-8173017 (orient:+) max_ev_support = 2 scaffold_7 + retained_exons 8172976-8173017 asmbl_49959 scaffold_7 + intron_skips_exon 8171087-8173613 asmbl_49960 // Exon Skipping and Retention # skipped_exon 8173018-8175492 (orient:+) max_ev_support = 2 # retained_exon 8173614-8173679 (orient:+) max_ev_support = 2 scaffold_7 + retained_exons 8173614-8173679 asmbl_49960 scaffold_7 + intron_skips_exon 8173018-8175492 asmbl_49959 // Exon Skipping and Retention # skipped_exon 8186128-8187038 (orient:+) max_ev_support = 2 # retained_exon 8186754-8186825 (orient:+) max_ev_support = 2 scaffold_7 + retained_exons 8186754-8186825 asmbl_49962 scaffold_7 + intron_skips_exon 8186128-8187038 asmbl_49963 // Retained and Spliced Intron # retained_intron 8279661-8279764 (orient:+) max_ev_support = 1 # spliced_intron 8279661-8279764 (orient:+) max_ev_support = 2 scaffold_7 + intron 8279661-8279764 asmbl_49980,asmbl_49982 scaffold_7 + retained_intron 8279661-8279764 asmbl_49983 // Exon Skipping and Retention # skipped_exon 8302442-8303074 (orient:+) max_ev_support = 2 # retained_exon 8302921-8302957 (orient:+) max_ev_support = 1 scaffold_7 + retained_exons 8302921-8302957 asmbl_49985 scaffold_7 + intron_skips_exon 8302442-8303074 asmbl_49984 // Exon Skipping and Retention # skipped_exon 8507767-8510079 (orient:+) max_ev_support = 2 # retained_exon 8508687-8508719 (orient:+) max_ev_support = 2 scaffold_7 + retained_exons 8508687-8508719 asmbl_50000 scaffold_7 + intron_skips_exon 8507767-8510079 asmbl_50001 // Retained and Spliced Intron # retained_intron 8507767-8508686 (orient:+) max_ev_support = 1 # spliced_intron 8507767-8508686 (orient:+) max_ev_support = 2 scaffold_7 + intron 8507767-8508686 asmbl_50000,asmbl_50006 scaffold_7 + retained_intron 8507767-8508686 asmbl_50004,asmbl_50005 // Retained and Spliced Intron # retained_intron 8507767-8510079 (orient:+) max_ev_support = 1 # spliced_intron 8507767-8510079 (orient:+) max_ev_support = 2 scaffold_7 + intron 8507767-8510079 asmbl_50001 scaffold_7 + retained_intron 8507767-8510079 asmbl_50004,asmbl_50005 // Retained and Spliced Intron # retained_intron 8508720-8510079 (orient:+) max_ev_support = 1 # spliced_intron 8508720-8510079 (orient:+) max_ev_support = 2 scaffold_7 + intron 8508720-8510079 asmbl_50000 scaffold_7 + retained_intron 8508720-8510079 asmbl_50004,asmbl_50005,asmbl_50006 // Retained and Spliced Intron # retained_intron 8518033-8520452 (orient:+) max_ev_support = 2 # spliced_intron 8518033-8520452 (orient:+) max_ev_support = 1 scaffold_7 + intron 8518033-8520452 asmbl_50012 scaffold_7 + retained_intron 8518033-8520452 asmbl_50011 // Exon Skipping and Retention # skipped_exon 8585880-8587811 (orient:+) max_ev_support = 1 # retained_exon 8586151-8586177 (orient:+) max_ev_support = 1 scaffold_7 + retained_exons 8586151-8586177 asmbl_50021 scaffold_7 + intron_skips_exon 8585880-8587811 asmbl_50022 // Exon Skipping and Retention # skipped_exon 8773897-8774927 (orient:+) max_ev_support = 2 # retained_exon 8774004-8774090 (orient:+) max_ev_support = 2 scaffold_7 + retained_exons 8774004-8774090 asmbl_50051 scaffold_7 + intron_skips_exon 8773897-8774927 asmbl_50050,asmbl_50052 // Retained and Spliced Intron # retained_intron 8795676-8795757 (orient:+) max_ev_support = 1 # spliced_intron 8795676-8795757 (orient:+) max_ev_support = 1 scaffold_7 + intron 8795676-8795757 asmbl_50056 scaffold_7 + retained_intron 8795676-8795757 asmbl_50055 // Exon Skipping and Retention # skipped_exon 8813443-8814448 (orient:+) max_ev_support = 2 # retained_exon 8813564-8814350 (orient:+) max_ev_support = 2 scaffold_7 + retained_exons 8813564-8813669,8814183-8814350 asmbl_50058 scaffold_7 + intron_skips_exon 8813443-8814448 asmbl_50057 // Retained and Spliced Intron # retained_intron 8842324-8844151 (orient:+) max_ev_support = 2 # spliced_intron 8842324-8844151 (orient:+) max_ev_support = 2 scaffold_7 + intron 8842324-8844151 asmbl_50063 scaffold_7 + retained_intron 8842324-8844151 asmbl_50062 // Retained and Spliced Intron # retained_intron 9149763-9149863 (orient:+) max_ev_support = 2 # spliced_intron 9149763-9149863 (orient:+) max_ev_support = 1 scaffold_7 + intron 9149763-9149863 asmbl_50070 scaffold_7 + retained_intron 9149763-9149863 asmbl_50069 // Retained and Spliced Intron # retained_intron 9311355-9311554 (orient:+) max_ev_support = 2 # spliced_intron 9311355-9311554 (orient:+) max_ev_support = 3 scaffold_7 + intron 9311355-9311554 asmbl_50074,asmbl_50076 scaffold_7 + retained_intron 9311355-9311554 asmbl_50075 // Retained and Spliced Intron # retained_intron 9312366-9312531 (orient:+) max_ev_support = 2 # spliced_intron 9312366-9312531 (orient:+) max_ev_support = 3 scaffold_7 + intron 9312366-9312531 asmbl_50074,asmbl_50075 scaffold_7 + retained_intron 9312366-9312531 asmbl_50076 // Retained and Spliced Intron # retained_intron 9311727-9311873 (orient:+) max_ev_support = 2 # spliced_intron 9311727-9311873 (orient:+) max_ev_support = 3 scaffold_7 + intron 9311727-9311873 asmbl_50074,asmbl_50075,asmbl_50076 scaffold_7 + retained_intron 9311727-9311873 asmbl_50077 // Retained and Spliced Intron # retained_intron 9311935-9312011 (orient:+) max_ev_support = 2 # spliced_intron 9311935-9312011 (orient:+) max_ev_support = 3 scaffold_7 + intron 9311935-9312011 asmbl_50074,asmbl_50075,asmbl_50076 scaffold_7 + retained_intron 9311935-9312011 asmbl_50077 // Retained and Spliced Intron # retained_intron 9312119-9312215 (orient:+) max_ev_support = 2 # spliced_intron 9312119-9312215 (orient:+) max_ev_support = 3 scaffold_7 + intron 9312119-9312215 asmbl_50074,asmbl_50075,asmbl_50076 scaffold_7 + retained_intron 9312119-9312215 asmbl_50077 // Retained and Spliced Intron # retained_intron 9583534-9583622 (orient:+) max_ev_support = 3 # spliced_intron 9583534-9583622 (orient:+) max_ev_support = 2 scaffold_7 + intron 9583534-9583622 asmbl_50083 scaffold_7 + retained_intron 9583534-9583622 asmbl_50082 // Exon Skipping and Retention # skipped_exon 9665487-9666227 (orient:+) max_ev_support = 2 # retained_exon 9665700-9665745 (orient:+) max_ev_support = 1 scaffold_7 + retained_exons 9665700-9665745 asmbl_50087 scaffold_7 + intron_skips_exon 9665487-9666227 asmbl_50085 // Exon Skipping and Retention # skipped_exon 10299648-10301691 (orient:+) max_ev_support = 2 # retained_exon 10300971-10301039 (orient:+) max_ev_support = 2 scaffold_7 + retained_exons 10300971-10301039 asmbl_50109 scaffold_7 + intron_skips_exon 10299648-10301691 asmbl_50108 // Retained and Spliced Intron # retained_intron 10543036-10543134 (orient:+) max_ev_support = 1 # spliced_intron 10543036-10543134 (orient:+) max_ev_support = 2 scaffold_7 + intron 10543036-10543134 asmbl_50129 scaffold_7 + retained_intron 10543036-10543134 asmbl_50130 // Retained and Spliced Intron # retained_intron 11144044-11145072 (orient:+) max_ev_support = 1 # spliced_intron 11144044-11145072 (orient:+) max_ev_support = 3 scaffold_7 + intron 11144044-11145072 asmbl_50151,asmbl_50152,asmbl_50154 scaffold_7 + retained_intron 11144044-11145072 asmbl_50150,asmbl_50153,asmbl_50155 // Retained and Spliced Intron # retained_intron 11145104-11146469 (orient:+) max_ev_support = 3 # spliced_intron 11145104-11146469 (orient:+) max_ev_support = 3 scaffold_7 + intron 11145104-11146469 asmbl_50152 scaffold_7 + retained_intron 11145104-11146469 asmbl_50150,asmbl_50151,asmbl_50153,asmbl_50154,asmbl_50155 // Retained and Spliced Intron # retained_intron 11146814-11146910 (orient:+) max_ev_support = 2 # spliced_intron 11146814-11146910 (orient:+) max_ev_support = 3 scaffold_7 + intron 11146814-11146910 asmbl_50150,asmbl_50151,asmbl_50152,asmbl_50155 scaffold_7 + retained_intron 11146814-11146910 asmbl_50153,asmbl_50154 // Retained and Spliced Intron # retained_intron 11147047-11147136 (orient:+) max_ev_support = 1 # spliced_intron 11147047-11147136 (orient:+) max_ev_support = 2 scaffold_7 + intron 11147047-11147136 asmbl_50150,asmbl_50151,asmbl_50152 scaffold_7 + retained_intron 11147047-11147136 asmbl_50153,asmbl_50154,asmbl_50155 // Exon Skipping and Retention # skipped_exon 11412289-11413205 (orient:+) max_ev_support = 1 # retained_exon 11412935-11413022 (orient:+) max_ev_support = 4 scaffold_7 + retained_exons 11412935-11413022 asmbl_50172 scaffold_7 + intron_skips_exon 11412289-11413205 asmbl_50174 // Retained and Spliced Intron # retained_intron 11412972-11413205 (orient:+) max_ev_support = 1 # spliced_intron 11412972-11413205 (orient:+) max_ev_support = 3 scaffold_7 + intron 11412972-11413205 asmbl_50173 scaffold_7 + retained_intron 11412972-11413205 asmbl_50175 // Retained and Spliced Intron # retained_intron 11413023-11413205 (orient:+) max_ev_support = 1 # spliced_intron 11413023-11413205 (orient:+) max_ev_support = 4 scaffold_7 + intron 11413023-11413205 asmbl_50172 scaffold_7 + retained_intron 11413023-11413205 asmbl_50175 // Exon Skipping and Retention # skipped_exon 11767988-11768392 (orient:+) max_ev_support = 1 # retained_exon 11768121-11768276 (orient:+) max_ev_support = 2 scaffold_7 + retained_exons 11768121-11768276 asmbl_50185,asmbl_50186,asmbl_50188 scaffold_7 + intron_skips_exon 11767988-11768392 asmbl_50187 // Retained and Spliced Intron # retained_intron 11851032-11851796 (orient:+) max_ev_support = 4 # spliced_intron 11851032-11851796 (orient:+) max_ev_support = 2 scaffold_7 + intron 11851032-11851796 asmbl_50194 scaffold_7 + retained_intron 11851032-11851796 asmbl_50192 // Retained and Spliced Intron # retained_intron 11851482-11851796 (orient:+) max_ev_support = 3 # spliced_intron 11851482-11851796 (orient:+) max_ev_support = 2 scaffold_7 + intron 11851482-11851796 asmbl_50193 scaffold_7 + retained_intron 11851482-11851796 asmbl_50192 // Retained and Spliced Intron # retained_intron 12053958-12054062 (orient:+) max_ev_support = 1 # spliced_intron 12053958-12054062 (orient:+) max_ev_support = 2 scaffold_7 + intron 12053958-12054062 asmbl_50206,asmbl_50209 scaffold_7 + retained_intron 12053958-12054062 asmbl_50207 // Retained and Spliced Intron # retained_intron 12053972-12054062 (orient:+) max_ev_support = 1 # spliced_intron 12053972-12054062 (orient:+) max_ev_support = 2 scaffold_7 + intron 12053972-12054062 asmbl_50205 scaffold_7 + retained_intron 12053972-12054062 asmbl_50207 // Retained and Spliced Intron # retained_intron 12058955-12059038 (orient:+) max_ev_support = 2 # spliced_intron 12058955-12059038 (orient:+) max_ev_support = 3 scaffold_7 + intron 12058955-12059038 asmbl_50210,asmbl_50212 scaffold_7 + retained_intron 12058955-12059038 asmbl_50211 // Retained and Spliced Intron # retained_intron 12082951-12083025 (orient:+) max_ev_support = 2 # spliced_intron 12082951-12083025 (orient:+) max_ev_support = 1 scaffold_7 + intron 12082951-12083025 asmbl_50221 scaffold_7 + retained_intron 12082951-12083025 asmbl_50217,asmbl_50218 // Exon Skipping and Retention # skipped_exon 12082936-12083422 (orient:+) max_ev_support = 1 # retained_exon 12083026-12083095 (orient:+) max_ev_support = 1 scaffold_7 + retained_exons 12083026-12083095 asmbl_50221 scaffold_7 + intron_skips_exon 12082936-12083422 asmbl_50220 // Retained and Spliced Intron # retained_intron 12259661-12259956 (orient:+) max_ev_support = 2 # spliced_intron 12259661-12259956 (orient:+) max_ev_support = 3 scaffold_7 + intron 12259661-12259956 asmbl_50225 scaffold_7 + retained_intron 12259661-12259956 asmbl_50226 // Exon Skipping and Retention # skipped_exon 12268983-12270353 (orient:+) max_ev_support = 2 # retained_exon 12269185-12269733 (orient:+) max_ev_support = 7 scaffold_7 + retained_exons 12269185-12269733 asmbl_50230,asmbl_50231,asmbl_50232 scaffold_7 + intron_skips_exon 12268983-12270353 asmbl_50235 // Retained and Spliced Intron # retained_intron 12270450-12271072 (orient:+) max_ev_support = 1 # spliced_intron 12270450-12271072 (orient:+) max_ev_support = 4 scaffold_7 + intron 12270450-12271072 asmbl_50231 scaffold_7 + retained_intron 12270450-12271072 asmbl_50232,asmbl_50234 // Retained and Spliced Intron # retained_intron 12270450-12271204 (orient:+) max_ev_support = 1 # spliced_intron 12270450-12271204 (orient:+) max_ev_support = 4 scaffold_7 + intron 12270450-12271204 asmbl_50230,asmbl_50233,asmbl_50235 scaffold_7 + retained_intron 12270450-12271204 asmbl_50232,asmbl_50234 // Retained and Spliced Intron # retained_intron 12277542-12278368 (orient:+) max_ev_support = 2 # spliced_intron 12277542-12278368 (orient:+) max_ev_support = 2 scaffold_7 + intron 12277542-12278368 asmbl_50238,asmbl_50241 scaffold_7 + retained_intron 12277542-12278368 asmbl_50239 // Retained and Spliced Intron # retained_intron 12279110-12279796 (orient:+) max_ev_support = 2 # spliced_intron 12279110-12279796 (orient:+) max_ev_support = 2 scaffold_7 + intron 12279110-12279796 asmbl_50238,asmbl_50241 scaffold_7 + retained_intron 12279110-12279796 asmbl_50240 // Retained and Spliced Intron # retained_intron 12278830-12278991 (orient:+) max_ev_support = 1 # spliced_intron 12278830-12278991 (orient:+) max_ev_support = 2 scaffold_7 + intron 12278830-12278991 asmbl_50238 scaffold_7 + retained_intron 12278830-12278991 asmbl_50241 // Exon Skipping and Retention # skipped_exon 12369012-12370152 (orient:+) max_ev_support = 2 # retained_exon 12369335-12369685 (orient:+) max_ev_support = 1 scaffold_7 + retained_exons 12369335-12369404,12369618-12369685 asmbl_50251 scaffold_7 + intron_skips_exon 12369012-12370152 asmbl_50247,asmbl_50252 // Retained and Spliced Intron # retained_intron 12410566-12410770 (orient:+) max_ev_support = 1 # spliced_intron 12410566-12410770 (orient:+) max_ev_support = 2 scaffold_7 + intron 12410566-12410770 asmbl_50256 scaffold_7 + retained_intron 12410566-12410770 asmbl_50257 // Retained and Spliced Intron # retained_intron 12412680-12412840 (orient:+) max_ev_support = 2 # spliced_intron 12412680-12412840 (orient:+) max_ev_support = 3 scaffold_7 + intron 12412680-12412840 asmbl_50258 scaffold_7 + retained_intron 12412680-12412840 asmbl_50259 // Retained and Spliced Intron # retained_intron 12412941-12413129 (orient:+) max_ev_support = 2 # spliced_intron 12412941-12413129 (orient:+) max_ev_support = 3 scaffold_7 + intron 12412941-12413129 asmbl_50258 scaffold_7 + retained_intron 12412941-12413129 asmbl_50259 // Retained and Spliced Intron # retained_intron 12437710-12437791 (orient:+) max_ev_support = 1 # spliced_intron 12437710-12437791 (orient:+) max_ev_support = 2 scaffold_7 + intron 12437710-12437791 asmbl_50264,asmbl_50265 scaffold_7 + retained_intron 12437710-12437791 asmbl_50266 // Retained and Spliced Intron # retained_intron 12437984-12438059 (orient:+) max_ev_support = 1 # spliced_intron 12437984-12438059 (orient:+) max_ev_support = 2 scaffold_7 + intron 12437984-12438059 asmbl_50264,asmbl_50265 scaffold_7 + retained_intron 12437984-12438059 asmbl_50266 // Retained and Spliced Intron # retained_intron 12614534-12614733 (orient:+) max_ev_support = 3 # spliced_intron 12614534-12614733 (orient:+) max_ev_support = 3 scaffold_7 + intron 12614534-12614733 asmbl_50278 scaffold_7 + retained_intron 12614534-12614733 asmbl_50279 // Retained and Spliced Intron # retained_intron 12614841-12615086 (orient:+) max_ev_support = 3 # spliced_intron 12614841-12615086 (orient:+) max_ev_support = 3 scaffold_7 + intron 12614841-12615086 asmbl_50278 scaffold_7 + retained_intron 12614841-12615086 asmbl_50279 // Retained and Spliced Intron # retained_intron 12727956-12728043 (orient:+) max_ev_support = 1 # spliced_intron 12727956-12728043 (orient:+) max_ev_support = 2 scaffold_7 + intron 12727956-12728043 asmbl_50295 scaffold_7 + retained_intron 12727956-12728043 asmbl_50296 // Retained and Spliced Intron # retained_intron 13204588-13204713 (orient:+) max_ev_support = 2 # spliced_intron 13204588-13204713 (orient:+) max_ev_support = 2 scaffold_7 + intron 13204588-13204713 asmbl_50314,asmbl_50316,asmbl_50317 scaffold_7 + retained_intron 13204588-13204713 asmbl_50315 // Retained and Spliced Intron # retained_intron 13204822-13204912 (orient:+) max_ev_support = 2 # spliced_intron 13204822-13204912 (orient:+) max_ev_support = 2 scaffold_7 + intron 13204822-13204912 asmbl_50314,asmbl_50316,asmbl_50317 scaffold_7 + retained_intron 13204822-13204912 asmbl_50315,asmbl_50318 // Retained and Spliced Intron # retained_intron 13205012-13205170 (orient:+) max_ev_support = 2 # spliced_intron 13205012-13205170 (orient:+) max_ev_support = 2 scaffold_7 + intron 13205012-13205170 asmbl_50314,asmbl_50316,asmbl_50317,asmbl_50318 scaffold_7 + retained_intron 13205012-13205170 asmbl_50315 // Retained and Spliced Intron # retained_intron 13205270-13205387 (orient:+) max_ev_support = 2 # spliced_intron 13205270-13205387 (orient:+) max_ev_support = 2 scaffold_7 + intron 13205270-13205387 asmbl_50314,asmbl_50316,asmbl_50317 scaffold_7 + retained_intron 13205270-13205387 asmbl_50315,asmbl_50318 // Retained and Spliced Intron # retained_intron 13205487-13205684 (orient:+) max_ev_support = 2 # spliced_intron 13205487-13205684 (orient:+) max_ev_support = 2 scaffold_7 + intron 13205487-13205684 asmbl_50314,asmbl_50317 scaffold_7 + retained_intron 13205487-13205684 asmbl_50315,asmbl_50316 // Retained and Spliced Intron # retained_intron 13205784-13205988 (orient:+) max_ev_support = 1 # spliced_intron 13205784-13205988 (orient:+) max_ev_support = 2 scaffold_7 + intron 13205784-13205988 asmbl_50314 scaffold_7 + retained_intron 13205784-13205988 asmbl_50316,asmbl_50317 // Retained and Spliced Intron # retained_intron 13210711-13210856 (orient:+) max_ev_support = 2 # spliced_intron 13210711-13210856 (orient:+) max_ev_support = 2 scaffold_7 + intron 13210711-13210856 asmbl_50320,asmbl_50321,asmbl_50323,asmbl_50325 scaffold_7 + retained_intron 13210711-13210856 asmbl_50322 // Retained and Spliced Intron # retained_intron 13221544-13221715 (orient:+) max_ev_support = 2 # spliced_intron 13221544-13221715 (orient:+) max_ev_support = 2 scaffold_7 + intron 13221544-13221715 asmbl_50329,asmbl_50331 scaffold_7 + retained_intron 13221544-13221715 asmbl_50328,asmbl_50330 // Retained and Spliced Intron # retained_intron 13546262-13546404 (orient:+) max_ev_support = 1 # spliced_intron 13546262-13546404 (orient:+) max_ev_support = 2 scaffold_7 + intron 13546262-13546404 asmbl_50358,asmbl_50362 scaffold_7 + retained_intron 13546262-13546404 asmbl_50361 // Retained and Spliced Intron # retained_intron 13546792-13546895 (orient:+) max_ev_support = 1 # spliced_intron 13546792-13546895 (orient:+) max_ev_support = 2 scaffold_7 + intron 13546792-13546895 asmbl_50358,asmbl_50361 scaffold_7 + retained_intron 13546792-13546895 asmbl_50362 // Exon Skipping and Retention # skipped_exon 13575743-13576051 (orient:+) max_ev_support = 3 # retained_exon 13575816-13575933 (orient:+) max_ev_support = 3 scaffold_7 + retained_exons 13575816-13575933 asmbl_50364 scaffold_7 + intron_skips_exon 13575743-13576051 asmbl_50363 // Retained and Spliced Intron # retained_intron 13889999-13890106 (orient:+) max_ev_support = 1 # spliced_intron 13889999-13890106 (orient:+) max_ev_support = 3 scaffold_7 + intron 13889999-13890106 asmbl_50381 scaffold_7 + retained_intron 13889999-13890106 asmbl_50383 // Retained and Spliced Intron # retained_intron 13952403-13952512 (orient:+) max_ev_support = 2 # spliced_intron 13952403-13952512 (orient:+) max_ev_support = 2 scaffold_7 + intron 13952403-13952512 asmbl_50387,asmbl_50388 scaffold_7 + retained_intron 13952403-13952512 asmbl_50386 // Retained and Spliced Intron # retained_intron 13953437-13953519 (orient:+) max_ev_support = 4 # spliced_intron 13953437-13953519 (orient:+) max_ev_support = 2 scaffold_7 + intron 13953437-13953519 asmbl_50387,asmbl_50388 scaffold_7 + retained_intron 13953437-13953519 asmbl_50386,asmbl_50389 // Exon Skipping and Retention # skipped_exon 13960169-13962754 (orient:+) max_ev_support = 1 # retained_exon 13960459-13960664 (orient:+) max_ev_support = 4 scaffold_7 + retained_exons 13960459-13960664 asmbl_50390 scaffold_7 + intron_skips_exon 13960169-13962754 asmbl_50395 // Retained and Spliced Intron # retained_intron 13960665-13960867 (orient:+) max_ev_support = 3 # spliced_intron 13960665-13960867 (orient:+) max_ev_support = 3 scaffold_7 + intron 13960665-13960867 asmbl_50390,asmbl_50392 scaffold_7 + retained_intron 13960665-13960867 asmbl_50391,asmbl_50393 // Retained and Spliced Intron # retained_intron 15232602-15232777 (orient:+) max_ev_support = 2 # spliced_intron 15232602-15232777 (orient:+) max_ev_support = 1 scaffold_7 + intron 15232602-15232777 asmbl_50415 scaffold_7 + retained_intron 15232602-15232777 asmbl_50416,asmbl_50417 // Retained and Spliced Intron # retained_intron 15245671-15246051 (orient:+) max_ev_support = 2 # spliced_intron 15245671-15246051 (orient:+) max_ev_support = 1 scaffold_7 + intron 15245671-15246051 asmbl_50420 scaffold_7 + retained_intron 15245671-15246051 asmbl_50419,asmbl_50421,asmbl_50422 // Retained and Spliced Intron # retained_intron 15248021-15248121 (orient:+) max_ev_support = 1 # spliced_intron 15248021-15248121 (orient:+) max_ev_support = 2 scaffold_7 + intron 15248021-15248121 asmbl_50419,asmbl_50420,asmbl_50421 scaffold_7 + retained_intron 15248021-15248121 asmbl_50422 // Retained and Spliced Intron # retained_intron 15272158-15272574 (orient:+) max_ev_support = 1 # spliced_intron 15272158-15272574 (orient:+) max_ev_support = 1 scaffold_7 + intron 15272158-15272574 asmbl_50427,asmbl_50428,asmbl_50429,asmbl_50431,asmbl_50434,asmbl_50435 scaffold_7 + retained_intron 15272158-15272574 asmbl_50425,asmbl_50430,asmbl_50433 // Retained and Spliced Intron # retained_intron 15270861-15271287 (orient:+) max_ev_support = 1 # spliced_intron 15270861-15271287 (orient:+) max_ev_support = 1 scaffold_7 + intron 15270861-15271287 asmbl_50428,asmbl_50430,asmbl_50431,asmbl_50433 scaffold_7 + retained_intron 15270861-15271287 asmbl_50434,asmbl_50435 // Retained and Spliced Intron # retained_intron 15270953-15271287 (orient:+) max_ev_support = 1 # spliced_intron 15270953-15271287 (orient:+) max_ev_support = 1 scaffold_7 + intron 15270953-15271287 asmbl_50425,asmbl_50427,asmbl_50429 scaffold_7 + retained_intron 15270953-15271287 asmbl_50434,asmbl_50435 // Retained and Spliced Intron # retained_intron 15595021-15595243 (orient:+) max_ev_support = 2 # spliced_intron 15595021-15595243 (orient:+) max_ev_support = 3 scaffold_7 + intron 15595021-15595243 asmbl_50446 scaffold_7 + retained_intron 15595021-15595243 asmbl_50447 // Retained and Spliced Intron # retained_intron 15595021-15595253 (orient:+) max_ev_support = 2 # spliced_intron 15595021-15595253 (orient:+) max_ev_support = 1 scaffold_7 + intron 15595021-15595253 asmbl_50448 scaffold_7 + retained_intron 15595021-15595253 asmbl_50447 // Exon Skipping and Retention # skipped_exon 15598541-15599723 (orient:+) max_ev_support = 1 # retained_exon 15599004-15599072 (orient:+) max_ev_support = 1 scaffold_7 + retained_exons 15599004-15599072 asmbl_50452 scaffold_7 + intron_skips_exon 15598541-15599723 asmbl_50450,asmbl_50451 // Exon Skipping and Retention # skipped_exon 17610958-17612226 (orient:+) max_ev_support = 1 # retained_exon 17611628-17611792 (orient:+) max_ev_support = 2 scaffold_7 + retained_exons 17611628-17611792 asmbl_50485 scaffold_7 + intron_skips_exon 17610958-17612226 asmbl_50487 // Exon Skipping and Retention # skipped_exon 17609629-17611627 (orient:+) max_ev_support = 2 # retained_exon 17610793-17610957 (orient:+) max_ev_support = 1 scaffold_7 + retained_exons 17610793-17610957 asmbl_50487 scaffold_7 + intron_skips_exon 17609629-17611627 asmbl_50485 // Retained and Spliced Intron # retained_intron 17685023-17685192 (orient:+) max_ev_support = 2 # spliced_intron 17685023-17685192 (orient:+) max_ev_support = 2 scaffold_7 + intron 17685023-17685192 asmbl_50490 scaffold_7 + retained_intron 17685023-17685192 asmbl_50491 // Exon Skipping and Retention # skipped_exon 17732017-17733017 (orient:+) max_ev_support = 1 # retained_exon 17732526-17732588 (orient:+) max_ev_support = 2 scaffold_7 + retained_exons 17732526-17732588 asmbl_50492 scaffold_7 + intron_skips_exon 17732017-17733017 asmbl_50494 // Retained and Spliced Intron # retained_intron 17808816-17808944 (orient:+) max_ev_support = 1 # spliced_intron 17808816-17808944 (orient:+) max_ev_support = 2 scaffold_7 + intron 17808816-17808944 asmbl_50497,asmbl_50500,asmbl_50501 scaffold_7 + retained_intron 17808816-17808944 asmbl_50498 // Retained and Spliced Intron # retained_intron 18127677-18127784 (orient:+) max_ev_support = 1 # spliced_intron 18127677-18127784 (orient:+) max_ev_support = 1 scaffold_7 + intron 18127677-18127784 asmbl_50510 scaffold_7 + retained_intron 18127677-18127784 asmbl_50511 // Exon Skipping and Retention # skipped_exon 18783525-18784249 (orient:+) max_ev_support = 1 # retained_exon 18784049-18784164 (orient:+) max_ev_support = 1 scaffold_7 + retained_exons 18784049-18784164 asmbl_50532,asmbl_50533 scaffold_7 + intron_skips_exon 18783525-18784249 asmbl_50534 // Retained and Spliced Intron # retained_intron 129533-129658 (orient:-) max_ev_support = 1 # spliced_intron 129533-129658 (orient:-) max_ev_support = 1 scaffold_7 - intron 129533-129658 asmbl_50666 scaffold_7 - retained_intron 129533-129658 asmbl_50664 // Exon Skipping and Retention # skipped_exon 129533-130198 (orient:-) max_ev_support = 1 # retained_exon 129659-129709 (orient:-) max_ev_support = 1 scaffold_7 - retained_exons 129659-129709 asmbl_50666 scaffold_7 - intron_skips_exon 129533-130198 asmbl_50665 // Retained and Spliced Intron # retained_intron 124900-125149 (orient:-) max_ev_support = 1 # spliced_intron 124900-125149 (orient:-) max_ev_support = 1 scaffold_7 - intron 124900-125149 asmbl_50664,asmbl_50665,asmbl_50666 scaffold_7 - retained_intron 124900-125149 asmbl_50667 // Retained and Spliced Intron # retained_intron 706941-707196 (orient:-) max_ev_support = 1 # spliced_intron 706941-707196 (orient:-) max_ev_support = 3 scaffold_7 - intron 706941-707196 asmbl_50688,asmbl_50689,asmbl_50691 scaffold_7 - retained_intron 706941-707196 asmbl_50690 // Exon Skipping and Retention # skipped_exon 1387655-1389255 (orient:-) max_ev_support = 1 # retained_exon 1388753-1388863 (orient:-) max_ev_support = 2 scaffold_7 - retained_exons 1388753-1388863 asmbl_50718,asmbl_50722 scaffold_7 - intron_skips_exon 1387655-1389255 asmbl_50721 // Retained and Spliced Intron # retained_intron 1386162-1387009 (orient:-) max_ev_support = 1 # spliced_intron 1386162-1387009 (orient:-) max_ev_support = 2 scaffold_7 - intron 1386162-1387009 asmbl_50718,asmbl_50725 scaffold_7 - retained_intron 1386162-1387009 asmbl_50721,asmbl_50722,asmbl_50723,asmbl_50724 // Retained and Spliced Intron # retained_intron 1387124-1387457 (orient:-) max_ev_support = 1 # spliced_intron 1387124-1387457 (orient:-) max_ev_support = 2 scaffold_7 - intron 1387124-1387457 asmbl_50718,asmbl_50721,asmbl_50722,asmbl_50724,asmbl_50725 scaffold_7 - retained_intron 1387124-1387457 asmbl_50723 // Exon Skipping and Retention # skipped_exon 1438761-1440604 (orient:-) max_ev_support = 1 # retained_exon 1439519-1440370 (orient:-) max_ev_support = 1 scaffold_7 - retained_exons 1439519-1439752,1439894-1440043,1440155-1440370 asmbl_50727 scaffold_7 - intron_skips_exon 1438761-1440604 asmbl_50728 // Exon Skipping and Retention # skipped_exon 1429518-1430722 (orient:-) max_ev_support = 1 # retained_exon 1430110-1430166 (orient:-) max_ev_support = 1 scaffold_7 - retained_exons 1430110-1430166 asmbl_50728 scaffold_7 - intron_skips_exon 1429518-1430722 asmbl_50727 // Retained and Spliced Intron # retained_intron 2509920-2510016 (orient:-) max_ev_support = 2 # spliced_intron 2509920-2510016 (orient:-) max_ev_support = 2 scaffold_7 - intron 2509920-2510016 asmbl_50758 scaffold_7 - retained_intron 2509920-2510016 asmbl_50759 // Retained and Spliced Intron # retained_intron 2509920-2510092 (orient:-) max_ev_support = 2 # spliced_intron 2509920-2510092 (orient:-) max_ev_support = 3 scaffold_7 - intron 2509920-2510092 asmbl_50757 scaffold_7 - retained_intron 2509920-2510092 asmbl_50759 // Retained and Spliced Intron # retained_intron 2523136-2523439 (orient:-) max_ev_support = 3 # spliced_intron 2523136-2523439 (orient:-) max_ev_support = 3 scaffold_7 - intron 2523136-2523439 asmbl_50761 scaffold_7 - retained_intron 2523136-2523439 asmbl_50760 // Retained and Spliced Intron # retained_intron 2852620-2854421 (orient:-) max_ev_support = 6 # spliced_intron 2852620-2854421 (orient:-) max_ev_support = 1 scaffold_7 - intron 2852620-2854421 asmbl_50773,asmbl_50774 scaffold_7 - retained_intron 2852620-2854421 asmbl_50771,asmbl_50772 // Exon Skipping and Retention # skipped_exon 3390194-3390921 (orient:-) max_ev_support = 1 # retained_exon 3390334-3390498 (orient:-) max_ev_support = 1 scaffold_7 - retained_exons 3390334-3390498 asmbl_50791 scaffold_7 - intron_skips_exon 3390194-3390921 asmbl_50790 // Retained and Spliced Intron # retained_intron 3953206-3953955 (orient:-) max_ev_support = 1 # spliced_intron 3953206-3953955 (orient:-) max_ev_support = 2 scaffold_7 - intron 3953206-3953955 asmbl_50829,asmbl_50830,asmbl_50831 scaffold_7 - retained_intron 3953206-3953955 asmbl_50832,asmbl_50833,asmbl_50834,asmbl_50835,asmbl_50836,asmbl_50837,asmbl_50838,asmbl_50839 // Retained and Spliced Intron # retained_intron 3954085-3954301 (orient:-) max_ev_support = 1 # spliced_intron 3954085-3954301 (orient:-) max_ev_support = 2 scaffold_7 - intron 3954085-3954301 asmbl_50829,asmbl_50830,asmbl_50834,asmbl_50835,asmbl_50838 scaffold_7 - retained_intron 3954085-3954301 asmbl_50832,asmbl_50833,asmbl_50836,asmbl_50837,asmbl_50839 // Retained and Spliced Intron # retained_intron 3955080-3955398 (orient:-) max_ev_support = 1 # spliced_intron 3955080-3955398 (orient:-) max_ev_support = 2 scaffold_7 - intron 3955080-3955398 asmbl_50829,asmbl_50832,asmbl_50833,asmbl_50835 scaffold_7 - retained_intron 3955080-3955398 asmbl_50834 // Retained and Spliced Intron # retained_intron 3955085-3955398 (orient:-) max_ev_support = 1 # spliced_intron 3955085-3955398 (orient:-) max_ev_support = 2 scaffold_7 - intron 3955085-3955398 asmbl_50830,asmbl_50836,asmbl_50837,asmbl_50838 scaffold_7 - retained_intron 3955085-3955398 asmbl_50834 // Retained and Spliced Intron # retained_intron 3955229-3955398 (orient:-) max_ev_support = 1 # spliced_intron 3955229-3955398 (orient:-) max_ev_support = 1 scaffold_7 - intron 3955229-3955398 asmbl_50839 scaffold_7 - retained_intron 3955229-3955398 asmbl_50834 // Retained and Spliced Intron # retained_intron 3957526-3957766 (orient:-) max_ev_support = 2 # spliced_intron 3957526-3957766 (orient:-) max_ev_support = 1 scaffold_7 - intron 3957526-3957766 asmbl_50842 scaffold_7 - retained_intron 3957526-3957766 asmbl_50841 // Retained and Spliced Intron # retained_intron 3957526-3957770 (orient:-) max_ev_support = 2 # spliced_intron 3957526-3957770 (orient:-) max_ev_support = 2 scaffold_7 - intron 3957526-3957770 asmbl_50840 scaffold_7 - retained_intron 3957526-3957770 asmbl_50841 // Retained and Spliced Intron # retained_intron 4046121-4046335 (orient:-) max_ev_support = 3 # spliced_intron 4046121-4046335 (orient:-) max_ev_support = 2 scaffold_7 - intron 4046121-4046335 asmbl_50848 scaffold_7 - retained_intron 4046121-4046335 asmbl_50847 // Exon Skipping and Retention # skipped_exon 4047076-4047398 (orient:-) max_ev_support = 1 # retained_exon 4047198-4047231 (orient:-) max_ev_support = 2 scaffold_7 - retained_exons 4047198-4047231 asmbl_50848 scaffold_7 - intron_skips_exon 4047076-4047398 asmbl_50850 // Retained and Spliced Intron # retained_intron 4047076-4047197 (orient:-) max_ev_support = 1 # spliced_intron 4047076-4047197 (orient:-) max_ev_support = 2 scaffold_7 - intron 4047076-4047197 asmbl_50848 scaffold_7 - retained_intron 4047076-4047197 asmbl_50849 // Exon Skipping and Retention # skipped_exon 4498642-4501601 (orient:-) max_ev_support = 2 # retained_exon 4501324-4501379 (orient:-) max_ev_support = 2 scaffold_7 - retained_exons 4501324-4501379 asmbl_50864,asmbl_50865 scaffold_7 - intron_skips_exon 4498642-4501601 asmbl_50863 // Exon Skipping and Retention # skipped_exon 4498625-4501601 (orient:-) max_ev_support = 1 # retained_exon 4501324-4501379 (orient:-) max_ev_support = 2 scaffold_7 - retained_exons 4501324-4501379 asmbl_50864,asmbl_50865 scaffold_7 - intron_skips_exon 4498625-4501601 asmbl_50867 // Retained and Spliced Intron # retained_intron 5063228-5063324 (orient:-) max_ev_support = 2 # spliced_intron 5063228-5063324 (orient:-) max_ev_support = 1 scaffold_7 - intron 5063228-5063324 asmbl_50871 scaffold_7 - retained_intron 5063228-5063324 asmbl_50870 // Retained and Spliced Intron # retained_intron 5183050-5183286 (orient:-) max_ev_support = 2 # spliced_intron 5183050-5183286 (orient:-) max_ev_support = 2 scaffold_7 - intron 5183050-5183286 asmbl_50875 scaffold_7 - retained_intron 5183050-5183286 asmbl_50874 // Exon Skipping and Retention # skipped_exon 5183050-5183703 (orient:-) max_ev_support = 1 # retained_exon 5183287-5183353 (orient:-) max_ev_support = 2 scaffold_7 - retained_exons 5183287-5183353 asmbl_50875 scaffold_7 - intron_skips_exon 5183050-5183703 asmbl_50876 // Retained and Spliced Intron # retained_intron 5265960-5265992 (orient:-) max_ev_support = 2 # spliced_intron 5265960-5265992 (orient:-) max_ev_support = 1 scaffold_7 - intron 5265960-5265992 asmbl_50878 scaffold_7 - retained_intron 5265960-5265992 asmbl_50877 // Exon Skipping and Retention # skipped_exon 5423446-5425938 (orient:-) max_ev_support = 1 # retained_exon 5424137-5424184 (orient:-) max_ev_support = 1 scaffold_7 - retained_exons 5424137-5424184 asmbl_50887 scaffold_7 - intron_skips_exon 5423446-5425938 asmbl_50886 // Retained and Spliced Intron # retained_intron 5840050-5841961 (orient:-) max_ev_support = 2 # spliced_intron 5840050-5841961 (orient:-) max_ev_support = 1 scaffold_7 - intron 5840050-5841961 asmbl_50892 scaffold_7 - retained_intron 5840050-5841961 asmbl_50891,asmbl_50893 // Retained and Spliced Intron # retained_intron 5910425-5910739 (orient:-) max_ev_support = 2 # spliced_intron 5910425-5910739 (orient:-) max_ev_support = 1 scaffold_7 - intron 5910425-5910739 asmbl_50898 scaffold_7 - retained_intron 5910425-5910739 asmbl_50897 // Exon Skipping and Retention # skipped_exon 5916256-5917155 (orient:-) max_ev_support = 2 # retained_exon 5916586-5916761 (orient:-) max_ev_support = 2 scaffold_7 - retained_exons 5916586-5916761 asmbl_50899 scaffold_7 - intron_skips_exon 5916256-5917155 asmbl_50901 // Retained and Spliced Intron # retained_intron 5915073-5915159 (orient:-) max_ev_support = 2 # spliced_intron 5915073-5915159 (orient:-) max_ev_support = 2 scaffold_7 - intron 5915073-5915159 asmbl_50899,asmbl_50900,asmbl_50901,asmbl_50903,asmbl_50904 scaffold_7 - retained_intron 5915073-5915159 asmbl_50902 // Retained and Spliced Intron # retained_intron 5916677-5917155 (orient:-) max_ev_support = 1 # spliced_intron 5916677-5917155 (orient:-) max_ev_support = 2 scaffold_7 - intron 5916677-5917155 asmbl_50900 scaffold_7 - retained_intron 5916677-5917155 asmbl_50903,asmbl_50904 // Retained and Spliced Intron # retained_intron 5916762-5917155 (orient:-) max_ev_support = 1 # spliced_intron 5916762-5917155 (orient:-) max_ev_support = 2 scaffold_7 - intron 5916762-5917155 asmbl_50899 scaffold_7 - retained_intron 5916762-5917155 asmbl_50903,asmbl_50904 // Retained and Spliced Intron # retained_intron 5916256-5916585 (orient:-) max_ev_support = 1 # spliced_intron 5916256-5916585 (orient:-) max_ev_support = 2 scaffold_7 - intron 5916256-5916585 asmbl_50899,asmbl_50900,asmbl_50903 scaffold_7 - retained_intron 5916256-5916585 asmbl_50904 // Retained and Spliced Intron # retained_intron 5916256-5917155 (orient:-) max_ev_support = 1 # spliced_intron 5916256-5917155 (orient:-) max_ev_support = 2 scaffold_7 - intron 5916256-5917155 asmbl_50901 scaffold_7 - retained_intron 5916256-5917155 asmbl_50904 // Retained and Spliced Intron # retained_intron 6042028-6042598 (orient:-) max_ev_support = 7 # spliced_intron 6042028-6042598 (orient:-) max_ev_support = 2 scaffold_7 - intron 6042028-6042598 asmbl_50910 scaffold_7 - retained_intron 6042028-6042598 asmbl_50908,asmbl_50909,asmbl_50911,asmbl_50912 // Retained and Spliced Intron # retained_intron 6042675-6042946 (orient:-) max_ev_support = 7 # spliced_intron 6042675-6042946 (orient:-) max_ev_support = 2 scaffold_7 - intron 6042675-6042946 asmbl_50909 scaffold_7 - retained_intron 6042675-6042946 asmbl_50908 // Retained and Spliced Intron # retained_intron 6042675-6043339 (orient:-) max_ev_support = 9 # spliced_intron 6042675-6043339 (orient:-) max_ev_support = 2 scaffold_7 - intron 6042675-6043339 asmbl_50912 scaffold_7 - retained_intron 6042675-6043339 asmbl_50908 // Retained and Spliced Intron # retained_intron 6042675-6043363 (orient:-) max_ev_support = 9 # spliced_intron 6042675-6043363 (orient:-) max_ev_support = 2 scaffold_7 - intron 6042675-6043363 asmbl_50910,asmbl_50911 scaffold_7 - retained_intron 6042675-6043363 asmbl_50908 // Retained and Spliced Intron # retained_intron 6580953-6581051 (orient:-) max_ev_support = 2 # spliced_intron 6580953-6581051 (orient:-) max_ev_support = 1 scaffold_7 - intron 6580953-6581051 asmbl_50921 scaffold_7 - retained_intron 6580953-6581051 asmbl_50920 // Retained and Spliced Intron # retained_intron 6654846-6655304 (orient:-) max_ev_support = 4 # spliced_intron 6654846-6655304 (orient:-) max_ev_support = 2 scaffold_7 - intron 6654846-6655304 asmbl_50930,asmbl_50931 scaffold_7 - retained_intron 6654846-6655304 asmbl_50929 // Retained and Spliced Intron # retained_intron 6655482-6656656 (orient:-) max_ev_support = 3 # spliced_intron 6655482-6656656 (orient:-) max_ev_support = 2 scaffold_7 - intron 6655482-6656656 asmbl_50930,asmbl_50931,asmbl_50932 scaffold_7 - retained_intron 6655482-6656656 asmbl_50929 // Retained and Spliced Intron # retained_intron 7493241-7494424 (orient:-) max_ev_support = 2 # spliced_intron 7493241-7494424 (orient:-) max_ev_support = 1 scaffold_7 - intron 7493241-7494424 asmbl_50942 scaffold_7 - retained_intron 7493241-7494424 asmbl_50941 // Retained and Spliced Intron # retained_intron 7534643-7534673 (orient:-) max_ev_support = 1 # spliced_intron 7534643-7534673 (orient:-) max_ev_support = 1 scaffold_7 - intron 7534643-7534673 asmbl_50949 scaffold_7 - retained_intron 7534643-7534673 asmbl_50948 // Retained and Spliced Intron # retained_intron 7789092-7789283 (orient:-) max_ev_support = 4 # spliced_intron 7789092-7789283 (orient:-) max_ev_support = 3 scaffold_7 - intron 7789092-7789283 asmbl_50976,asmbl_50977 scaffold_7 - retained_intron 7789092-7789283 asmbl_50974,asmbl_50975 // Retained and Spliced Intron # retained_intron 7927994-7928676 (orient:-) max_ev_support = 1 # spliced_intron 7927994-7928676 (orient:-) max_ev_support = 2 scaffold_7 - intron 7927994-7928676 asmbl_50978,asmbl_50980 scaffold_7 - retained_intron 7927994-7928676 asmbl_50979 // Exon Skipping and Retention # skipped_exon 8295633-8297094 (orient:-) max_ev_support = 2 # retained_exon 8296155-8296440 (orient:-) max_ev_support = 2 scaffold_7 - retained_exons 8296155-8296257,8296346-8296440 asmbl_50993 scaffold_7 - intron_skips_exon 8295633-8297094 asmbl_50994 // Exon Skipping and Retention # skipped_exon 8296258-8297094 (orient:-) max_ev_support = 2 # retained_exon 8296346-8296440 (orient:-) max_ev_support = 2 scaffold_7 - retained_exons 8296346-8296440 asmbl_50993 scaffold_7 - intron_skips_exon 8296258-8297094 asmbl_50995 // Retained and Spliced Intron # retained_intron 8296441-8297094 (orient:-) max_ev_support = 2 # spliced_intron 8296441-8297094 (orient:-) max_ev_support = 2 scaffold_7 - intron 8296441-8297094 asmbl_50993 scaffold_7 - retained_intron 8296441-8297094 asmbl_50996,asmbl_50998 // Retained and Spliced Intron # retained_intron 8296258-8296345 (orient:-) max_ev_support = 2 # spliced_intron 8296258-8296345 (orient:-) max_ev_support = 2 scaffold_7 - intron 8296258-8296345 asmbl_50993,asmbl_50996 scaffold_7 - retained_intron 8296258-8296345 asmbl_50998 // Retained and Spliced Intron # retained_intron 8296258-8297094 (orient:-) max_ev_support = 2 # spliced_intron 8296258-8297094 (orient:-) max_ev_support = 2 scaffold_7 - intron 8296258-8297094 asmbl_50995 scaffold_7 - retained_intron 8296258-8297094 asmbl_50998 // Retained and Spliced Intron # retained_intron 8659757-8660031 (orient:-) max_ev_support = 1 # spliced_intron 8659757-8660031 (orient:-) max_ev_support = 1 scaffold_7 - intron 8659757-8660031 asmbl_51028 scaffold_7 - retained_intron 8659757-8660031 asmbl_51026,asmbl_51027 // Retained and Spliced Intron # retained_intron 8659761-8660031 (orient:-) max_ev_support = 1 # spliced_intron 8659761-8660031 (orient:-) max_ev_support = 2 scaffold_7 - intron 8659761-8660031 asmbl_51024,asmbl_51025 scaffold_7 - retained_intron 8659761-8660031 asmbl_51026,asmbl_51027 // Retained and Spliced Intron # retained_intron 9708727-9708817 (orient:-) max_ev_support = 1 # spliced_intron 9708727-9708817 (orient:-) max_ev_support = 2 scaffold_7 - intron 9708727-9708817 asmbl_51057 scaffold_7 - retained_intron 9708727-9708817 asmbl_51058 // Exon Skipping and Retention # skipped_exon 9767491-9767994 (orient:-) max_ev_support = 1 # retained_exon 9767588-9767656 (orient:-) max_ev_support = 2 scaffold_7 - retained_exons 9767588-9767656 asmbl_51063 scaffold_7 - intron_skips_exon 9767491-9767994 asmbl_51064 // Retained and Spliced Intron # retained_intron 9782875-9783156 (orient:-) max_ev_support = 2 # spliced_intron 9782875-9783156 (orient:-) max_ev_support = 1 scaffold_7 - intron 9782875-9783156 asmbl_51067,asmbl_51068 scaffold_7 - retained_intron 9782875-9783156 asmbl_51066 // Retained and Spliced Intron # retained_intron 9810110-9810191 (orient:-) max_ev_support = 1 # spliced_intron 9810110-9810191 (orient:-) max_ev_support = 1 scaffold_7 - intron 9810110-9810191 asmbl_51075 scaffold_7 - retained_intron 9810110-9810191 asmbl_51072 // Retained and Spliced Intron # retained_intron 9833548-9833658 (orient:-) max_ev_support = 3 # spliced_intron 9833548-9833658 (orient:-) max_ev_support = 1 scaffold_7 - intron 9833548-9833658 asmbl_51081,asmbl_51082 scaffold_7 - retained_intron 9833548-9833658 asmbl_51079,asmbl_51080 // Exon Skipping and Retention # skipped_exon 9836258-9836660 (orient:-) max_ev_support = 2 # retained_exon 9836509-9836572 (orient:-) max_ev_support = 2 scaffold_7 - retained_exons 9836509-9836572 asmbl_51080,asmbl_51082 scaffold_7 - intron_skips_exon 9836258-9836660 asmbl_51079,asmbl_51081 // Exon Skipping and Retention # skipped_exon 9864000-9864641 (orient:-) max_ev_support = 2 # retained_exon 9864296-9864325 (orient:-) max_ev_support = 1 scaffold_7 - retained_exons 9864296-9864325 asmbl_51091,asmbl_51094 scaffold_7 - intron_skips_exon 9864000-9864641 asmbl_51092 // Retained and Spliced Intron # retained_intron 9921560-9921694 (orient:-) max_ev_support = 2 # spliced_intron 9921560-9921694 (orient:-) max_ev_support = 2 scaffold_7 - intron 9921560-9921694 asmbl_51101 scaffold_7 - retained_intron 9921560-9921694 asmbl_51102 // Retained and Spliced Intron # retained_intron 10536228-10536307 (orient:-) max_ev_support = 2 # spliced_intron 10536228-10536307 (orient:-) max_ev_support = 1 scaffold_7 - intron 10536228-10536307 asmbl_51129 scaffold_7 - retained_intron 10536228-10536307 asmbl_51128 // Retained and Spliced Intron # retained_intron 10910943-10910963 (orient:-) max_ev_support = 2 # spliced_intron 10910943-10910963 (orient:-) max_ev_support = 1 scaffold_7 - intron 10910943-10910963 asmbl_51144 scaffold_7 - retained_intron 10910943-10910963 asmbl_51145 // Retained and Spliced Intron # retained_intron 11121409-11121518 (orient:-) max_ev_support = 2 # spliced_intron 11121409-11121518 (orient:-) max_ev_support = 2 scaffold_7 - intron 11121409-11121518 asmbl_51150 scaffold_7 - retained_intron 11121409-11121518 asmbl_51151 // Retained and Spliced Intron # retained_intron 11987431-11987607 (orient:-) max_ev_support = 2 # spliced_intron 11987431-11987607 (orient:-) max_ev_support = 2 scaffold_7 - intron 11987431-11987607 asmbl_51181 scaffold_7 - retained_intron 11987431-11987607 asmbl_51180 // Retained and Spliced Intron # retained_intron 12363591-12363962 (orient:-) max_ev_support = 1 # spliced_intron 12363591-12363962 (orient:-) max_ev_support = 3 scaffold_7 - intron 12363591-12363962 asmbl_51198,asmbl_51200 scaffold_7 - retained_intron 12363591-12363962 asmbl_51199,asmbl_51202,asmbl_51203 // Retained and Spliced Intron # retained_intron 12364305-12364430 (orient:-) max_ev_support = 2 # spliced_intron 12364305-12364430 (orient:-) max_ev_support = 3 scaffold_7 - intron 12364305-12364430 asmbl_51198,asmbl_51200,asmbl_51202,asmbl_51203 scaffold_7 - retained_intron 12364305-12364430 asmbl_51199 // Retained and Spliced Intron # retained_intron 12386811-12386895 (orient:-) max_ev_support = 1 # spliced_intron 12386811-12386895 (orient:-) max_ev_support = 1 scaffold_7 - intron 12386811-12386895 asmbl_51206,asmbl_51207,asmbl_51209,asmbl_51210 scaffold_7 - retained_intron 12386811-12386895 asmbl_51205,asmbl_51208 // Retained and Spliced Intron # retained_intron 12386811-12386906 (orient:-) max_ev_support = 1 # spliced_intron 12386811-12386906 (orient:-) max_ev_support = 2 scaffold_7 - intron 12386811-12386906 asmbl_51204 scaffold_7 - retained_intron 12386811-12386906 asmbl_51205,asmbl_51208 // Retained and Spliced Intron # retained_intron 12387041-12387135 (orient:-) max_ev_support = 1 # spliced_intron 12387041-12387135 (orient:-) max_ev_support = 2 scaffold_7 - intron 12387041-12387135 asmbl_51204,asmbl_51206,asmbl_51207,asmbl_51208,asmbl_51209,asmbl_51210 scaffold_7 - retained_intron 12387041-12387135 asmbl_51205 // Retained and Spliced Intron # retained_intron 12387853-12388141 (orient:-) max_ev_support = 1 # spliced_intron 12387853-12388141 (orient:-) max_ev_support = 2 scaffold_7 - intron 12387853-12388141 asmbl_51204,asmbl_51205,asmbl_51208,asmbl_51210 scaffold_7 - retained_intron 12387853-12388141 asmbl_51206,asmbl_51207,asmbl_51209 // Retained and Spliced Intron # retained_intron 12388225-12388322 (orient:-) max_ev_support = 1 # spliced_intron 12388225-12388322 (orient:-) max_ev_support = 2 scaffold_7 - intron 12388225-12388322 asmbl_51204,asmbl_51205,asmbl_51207,asmbl_51208,asmbl_51210 scaffold_7 - retained_intron 12388225-12388322 asmbl_51206,asmbl_51209 // Retained and Spliced Intron # retained_intron 12387302-12387428 (orient:-) max_ev_support = 1 # spliced_intron 12387302-12387428 (orient:-) max_ev_support = 2 scaffold_7 - intron 12387302-12387428 asmbl_51204,asmbl_51205,asmbl_51206,asmbl_51208,asmbl_51209,asmbl_51210 scaffold_7 - retained_intron 12387302-12387428 asmbl_51207 // Retained and Spliced Intron # retained_intron 12387637-12387722 (orient:-) max_ev_support = 1 # spliced_intron 12387637-12387722 (orient:-) max_ev_support = 2 scaffold_7 - intron 12387637-12387722 asmbl_51204,asmbl_51205,asmbl_51206,asmbl_51208,asmbl_51210 scaffold_7 - retained_intron 12387637-12387722 asmbl_51207,asmbl_51209 // Retained and Spliced Intron # retained_intron 12415910-12416003 (orient:-) max_ev_support = 1 # spliced_intron 12415910-12416003 (orient:-) max_ev_support = 2 scaffold_7 - intron 12415910-12416003 asmbl_51215,asmbl_51216,asmbl_51218 scaffold_7 - retained_intron 12415910-12416003 asmbl_51217 // Retained and Spliced Intron # retained_intron 12414914-12415002 (orient:-) max_ev_support = 1 # spliced_intron 12414914-12415002 (orient:-) max_ev_support = 2 scaffold_7 - intron 12414914-12415002 asmbl_51215,asmbl_51216,asmbl_51217 scaffold_7 - retained_intron 12414914-12415002 asmbl_51218 // Retained and Spliced Intron # retained_intron 12428916-12429023 (orient:-) max_ev_support = 2 # spliced_intron 12428916-12429023 (orient:-) max_ev_support = 3 scaffold_7 - intron 12428916-12429023 asmbl_51222 scaffold_7 - retained_intron 12428916-12429023 asmbl_51223 // Exon Skipping and Retention # skipped_exon 12447826-12449542 (orient:-) max_ev_support = 1 # retained_exon 12448129-12449110 (orient:-) max_ev_support = 2 scaffold_7 - retained_exons 12448129-12448230,12449018-12449110 asmbl_51226,asmbl_51231,asmbl_51232,asmbl_51233 scaffold_7 - intron_skips_exon 12447826-12449542 asmbl_51234 // Retained and Spliced Intron # retained_intron 12451061-12451154 (orient:-) max_ev_support = 2 # spliced_intron 12451061-12451154 (orient:-) max_ev_support = 2 scaffold_7 - intron 12451061-12451154 asmbl_51226 scaffold_7 - retained_intron 12451061-12451154 asmbl_51228 // Retained and Spliced Intron # retained_intron 12455195-12455507 (orient:-) max_ev_support = 1 # spliced_intron 12455195-12455507 (orient:-) max_ev_support = 1 scaffold_7 - intron 12455195-12455507 asmbl_51232,asmbl_51233,asmbl_51234,asmbl_51235 scaffold_7 - retained_intron 12455195-12455507 asmbl_51231 // Retained and Spliced Intron # retained_intron 12452785-12453235 (orient:-) max_ev_support = 1 # spliced_intron 12452785-12453235 (orient:-) max_ev_support = 1 scaffold_7 - intron 12452785-12453235 asmbl_51231,asmbl_51233 scaffold_7 - retained_intron 12452785-12453235 asmbl_51232,asmbl_51234 // Retained and Spliced Intron # retained_intron 12540189-12540286 (orient:-) max_ev_support = 1 # spliced_intron 12540189-12540286 (orient:-) max_ev_support = 2 scaffold_7 - intron 12540189-12540286 asmbl_51237,asmbl_51238,asmbl_51242,asmbl_51243,asmbl_51244 scaffold_7 - retained_intron 12540189-12540286 asmbl_51241 // Retained and Spliced Intron # retained_intron 12649718-12649839 (orient:-) max_ev_support = 1 # spliced_intron 12649718-12649839 (orient:-) max_ev_support = 2 scaffold_7 - intron 12649718-12649839 asmbl_51259,asmbl_51261,asmbl_51262 scaffold_7 - retained_intron 12649718-12649839 asmbl_51260 // Retained and Spliced Intron # retained_intron 12649977-12650578 (orient:-) max_ev_support = 1 # spliced_intron 12649977-12650578 (orient:-) max_ev_support = 2 scaffold_7 - intron 12649977-12650578 asmbl_51259 scaffold_7 - retained_intron 12649977-12650578 asmbl_51260,asmbl_51261 // Retained and Spliced Intron # retained_intron 12649977-12650680 (orient:-) max_ev_support = 1 # spliced_intron 12649977-12650680 (orient:-) max_ev_support = 1 scaffold_7 - intron 12649977-12650680 asmbl_51262 scaffold_7 - retained_intron 12649977-12650680 asmbl_51260 // Retained and Spliced Intron # retained_intron 13015452-13015641 (orient:-) max_ev_support = 2 # spliced_intron 13015452-13015641 (orient:-) max_ev_support = 1 scaffold_7 - intron 13015452-13015641 asmbl_51278 scaffold_7 - retained_intron 13015452-13015641 asmbl_51283 // Retained and Spliced Intron # retained_intron 13019692-13019783 (orient:-) max_ev_support = 1 # spliced_intron 13019692-13019783 (orient:-) max_ev_support = 1 scaffold_7 - intron 13019692-13019783 asmbl_51278 scaffold_7 - retained_intron 13019692-13019783 asmbl_51284 // Retained and Spliced Intron # retained_intron 13173894-13174034 (orient:-) max_ev_support = 2 # spliced_intron 13173894-13174034 (orient:-) max_ev_support = 1 scaffold_7 - intron 13173894-13174034 asmbl_51292,asmbl_51293 scaffold_7 - retained_intron 13173894-13174034 asmbl_51291 // Retained and Spliced Intron # retained_intron 13196688-13197490 (orient:-) max_ev_support = 3 # spliced_intron 13196688-13197490 (orient:-) max_ev_support = 1 scaffold_7 - intron 13196688-13197490 asmbl_51299 scaffold_7 - retained_intron 13196688-13197490 asmbl_51295,asmbl_51296 // Retained and Spliced Intron # retained_intron 13196688-13197769 (orient:-) max_ev_support = 3 # spliced_intron 13196688-13197769 (orient:-) max_ev_support = 2 scaffold_7 - intron 13196688-13197769 asmbl_51297,asmbl_51298,asmbl_51300 scaffold_7 - retained_intron 13196688-13197769 asmbl_51295,asmbl_51296 // Retained and Spliced Intron # retained_intron 13198531-13198748 (orient:-) max_ev_support = 1 # spliced_intron 13198531-13198748 (orient:-) max_ev_support = 2 scaffold_7 - intron 13198531-13198748 asmbl_51295,asmbl_51297,asmbl_51300 scaffold_7 - retained_intron 13198531-13198748 asmbl_51296,asmbl_51298,asmbl_51299 // Retained and Spliced Intron # retained_intron 13552407-13554063 (orient:-) max_ev_support = 1 # spliced_intron 13552407-13554063 (orient:-) max_ev_support = 2 scaffold_7 - intron 13552407-13554063 asmbl_51311 scaffold_7 - retained_intron 13552407-13554063 asmbl_51312,asmbl_51313 // Retained and Spliced Intron # retained_intron 13554150-13554287 (orient:-) max_ev_support = 1 # spliced_intron 13554150-13554287 (orient:-) max_ev_support = 2 scaffold_7 - intron 13554150-13554287 asmbl_51311 scaffold_7 - retained_intron 13554150-13554287 asmbl_51312,asmbl_51313 // Retained and Spliced Intron # retained_intron 13866490-13867075 (orient:-) max_ev_support = 2 # spliced_intron 13866490-13867075 (orient:-) max_ev_support = 1 scaffold_7 - intron 13866490-13867075 asmbl_51321 scaffold_7 - retained_intron 13866490-13867075 asmbl_51319 // Retained and Spliced Intron # retained_intron 13866546-13867075 (orient:-) max_ev_support = 2 # spliced_intron 13866546-13867075 (orient:-) max_ev_support = 1 scaffold_7 - intron 13866546-13867075 asmbl_51322 scaffold_7 - retained_intron 13866546-13867075 asmbl_51319 // Retained and Spliced Intron # retained_intron 13863191-13863810 (orient:-) max_ev_support = 1 # spliced_intron 13863191-13863810 (orient:-) max_ev_support = 2 scaffold_7 - intron 13863191-13863810 asmbl_51318,asmbl_51319,asmbl_51321,asmbl_51322 scaffold_7 - retained_intron 13863191-13863810 asmbl_51320,asmbl_51323 // Retained and Spliced Intron # retained_intron 15020785-15020865 (orient:-) max_ev_support = 1 # spliced_intron 15020785-15020865 (orient:-) max_ev_support = 2 scaffold_7 - intron 15020785-15020865 asmbl_51350 scaffold_7 - retained_intron 15020785-15020865 asmbl_51351 // Exon Skipping and Retention # skipped_exon 15032178-15034345 (orient:-) max_ev_support = 1 # retained_exon 15033538-15033597 (orient:-) max_ev_support = 1 scaffold_7 - retained_exons 15033538-15033597 asmbl_51354 scaffold_7 - intron_skips_exon 15032178-15034345 asmbl_51355 // Exon Skipping and Retention # skipped_exon 15316590-15317879 (orient:-) max_ev_support = 1 # retained_exon 15316971-15317130 (orient:-) max_ev_support = 4 scaffold_7 - retained_exons 15316971-15317130 asmbl_51368 scaffold_7 - intron_skips_exon 15316590-15317879 asmbl_51370 // Exon Skipping and Retention # skipped_exon 15566218-15569133 (orient:-) max_ev_support = 1 # retained_exon 15568001-15568071 (orient:-) max_ev_support = 1 scaffold_7 - retained_exons 15568001-15568071 asmbl_51383,asmbl_51384 scaffold_7 - intron_skips_exon 15566218-15569133 asmbl_51385 // Exon Skipping and Retention # skipped_exon 15568072-15569453 (orient:-) max_ev_support = 1 # retained_exon 15569134-15569204 (orient:-) max_ev_support = 1 scaffold_7 - retained_exons 15569134-15569204 asmbl_51385 scaffold_7 - intron_skips_exon 15568072-15569453 asmbl_51383,asmbl_51384 // Retained and Spliced Intron # retained_intron 16823575-16823876 (orient:-) max_ev_support = 2 # spliced_intron 16823575-16823876 (orient:-) max_ev_support = 1 scaffold_7 - intron 16823575-16823876 asmbl_51416,asmbl_51417 scaffold_7 - retained_intron 16823575-16823876 asmbl_51413,asmbl_51415 // Retained and Spliced Intron # retained_intron 16829502-16829802 (orient:-) max_ev_support = 2 # spliced_intron 16829502-16829802 (orient:-) max_ev_support = 2 scaffold_7 - intron 16829502-16829802 asmbl_51420 scaffold_7 - retained_intron 16829502-16829802 asmbl_51421 // Retained and Spliced Intron # retained_intron 16829914-16830413 (orient:-) max_ev_support = 2 # spliced_intron 16829914-16830413 (orient:-) max_ev_support = 2 scaffold_7 - intron 16829914-16830413 asmbl_51420 scaffold_7 - retained_intron 16829914-16830413 asmbl_51421 // Retained and Spliced Intron # retained_intron 17339037-17339069 (orient:-) max_ev_support = 1 # spliced_intron 17339037-17339069 (orient:-) max_ev_support = 1 scaffold_7 - intron 17339037-17339069 asmbl_51426 scaffold_7 - retained_intron 17339037-17339069 asmbl_51424,asmbl_51425,asmbl_51427 // Exon Skipping and Retention # skipped_exon 17339247-17339925 (orient:-) max_ev_support = 1 # retained_exon 17339668-17339702 (orient:-) max_ev_support = 1 scaffold_7 - retained_exons 17339668-17339702 asmbl_51424 scaffold_7 - intron_skips_exon 17339247-17339925 asmbl_51425,asmbl_51426,asmbl_51427 // Exon Skipping and Retention # skipped_exon 17339140-17339667 (orient:-) max_ev_support = 1 # retained_exon 17339177-17339246 (orient:-) max_ev_support = 1 scaffold_7 - retained_exons 17339177-17339246 asmbl_51425,asmbl_51426 scaffold_7 - intron_skips_exon 17339140-17339667 asmbl_51424 // Retained and Spliced Intron # retained_intron 17339140-17339176 (orient:-) max_ev_support = 1 # spliced_intron 17339140-17339176 (orient:-) max_ev_support = 1 scaffold_7 - intron 17339140-17339176 asmbl_51425,asmbl_51426 scaffold_7 - retained_intron 17339140-17339176 asmbl_51427 // Exon Skipping and Retention # skipped_exon 18392948-18394633 (orient:-) max_ev_support = 2 # retained_exon 18393031-18393088 (orient:-) max_ev_support = 3 scaffold_7 - retained_exons 18393031-18393088 asmbl_51467,asmbl_51470,asmbl_51471,asmbl_51472,asmbl_51475,asmbl_51479 scaffold_7 - intron_skips_exon 18392948-18394633 asmbl_51469 // Exon Skipping and Retention # skipped_exon 18392945-18394633 (orient:-) max_ev_support = 1 # retained_exon 18393031-18393088 (orient:-) max_ev_support = 3 scaffold_7 - retained_exons 18393031-18393088 asmbl_51467,asmbl_51470,asmbl_51471,asmbl_51472,asmbl_51475,asmbl_51479 scaffold_7 - intron_skips_exon 18392945-18394633 asmbl_51473 // Exon Skipping and Retention # skipped_exon 18392945-18394646 (orient:-) max_ev_support = 1 # retained_exon 18393031-18393088 (orient:-) max_ev_support = 3 scaffold_7 - retained_exons 18393031-18393088 asmbl_51467,asmbl_51470,asmbl_51471,asmbl_51472,asmbl_51475,asmbl_51479 scaffold_7 - intron_skips_exon 18392945-18394646 asmbl_51480 // Exon Skipping and Retention # skipped_exon 18393089-18394633 (orient:-) max_ev_support = 3 # retained_exon 18394449-18394507 (orient:-) max_ev_support = 2 scaffold_7 - retained_exons 18394449-18394507 asmbl_51468,asmbl_51474 scaffold_7 - intron_skips_exon 18393089-18394633 asmbl_51467,asmbl_51470,asmbl_51471,asmbl_51472,asmbl_51475,asmbl_51479 // Retained and Spliced Intron # retained_intron 18392890-18393030 (orient:-) max_ev_support = 2 # spliced_intron 18392890-18393030 (orient:-) max_ev_support = 2 scaffold_7 - intron 18392890-18393030 asmbl_51471,asmbl_51472,asmbl_51474,asmbl_51476,asmbl_51479 scaffold_7 - retained_intron 18392890-18393030 asmbl_51478 // Retained and Spliced Intron # retained_intron 18392945-18393030 (orient:-) max_ev_support = 2 # spliced_intron 18392945-18393030 (orient:-) max_ev_support = 2 scaffold_7 - intron 18392945-18393030 asmbl_51468,asmbl_51470,asmbl_51475 scaffold_7 - retained_intron 18392945-18393030 asmbl_51478 // Retained and Spliced Intron # retained_intron 18392948-18393030 (orient:-) max_ev_support = 2 # spliced_intron 18392948-18393030 (orient:-) max_ev_support = 3 scaffold_7 - intron 18392948-18393030 asmbl_51467,asmbl_51477 scaffold_7 - retained_intron 18392948-18393030 asmbl_51478 // Retained and Spliced Intron # retained_intron 18619948-18620034 (orient:-) max_ev_support = 1 # spliced_intron 18619948-18620034 (orient:-) max_ev_support = 1 scaffold_7 - intron 18619948-18620034 asmbl_51483,asmbl_51488,asmbl_51489 scaffold_7 - retained_intron 18619948-18620034 asmbl_51484,asmbl_51485,asmbl_51487,asmbl_51490 // Retained and Spliced Intron # retained_intron 18615578-18615841 (orient:-) max_ev_support = 1 # spliced_intron 18615578-18615841 (orient:-) max_ev_support = 1 scaffold_7 - intron 18615578-18615841 asmbl_51483,asmbl_51484,asmbl_51485,asmbl_51486 scaffold_7 - retained_intron 18615578-18615841 asmbl_51487,asmbl_51488,asmbl_51489,asmbl_51490 // Retained and Spliced Intron # retained_intron 18945539-18945573 (orient:-) max_ev_support = 1 # spliced_intron 18945539-18945573 (orient:-) max_ev_support = 1 scaffold_7 - intron 18945539-18945573 asmbl_51507 scaffold_7 - retained_intron 18945539-18945573 asmbl_51506 // Retained and Spliced Intron # retained_intron 11417-11841 (orient:+) max_ev_support = 1 # spliced_intron 11417-11841 (orient:+) max_ev_support = 3 scaffold_70 + intron 11417-11841 asmbl_51591 scaffold_70 + retained_intron 11417-11841 asmbl_51592 // Retained and Spliced Intron # retained_intron 7908-7945 (orient:-) max_ev_support = 1 # spliced_intron 7908-7945 (orient:-) max_ev_support = 1 scaffold_70 - intron 7908-7945 asmbl_51597 scaffold_70 - retained_intron 7908-7945 asmbl_51598 // Retained and Spliced Intron # retained_intron 2724-3247 (orient:-) max_ev_support = 3 # spliced_intron 2724-3247 (orient:-) max_ev_support = 3 scaffold_723 - intron 2724-3247 asmbl_51618,asmbl_51620,asmbl_51621 scaffold_723 - retained_intron 2724-3247 asmbl_51617,asmbl_51619 // Exon Skipping and Retention # skipped_exon 1831-2666 (orient:-) max_ev_support = 2 # retained_exon 2439-2510 (orient:-) max_ev_support = 2 scaffold_723 - retained_exons 2439-2510 asmbl_51618,asmbl_51619,asmbl_51620 scaffold_723 - intron_skips_exon 1831-2666 asmbl_51617,asmbl_51621 // Retained and Spliced Intron # retained_intron 2273-2411 (orient:+) max_ev_support = 3 # spliced_intron 2273-2411 (orient:+) max_ev_support = 1 scaffold_731 + intron 2273-2411 asmbl_51631 scaffold_731 + retained_intron 2273-2411 asmbl_51630 // Retained and Spliced Intron # retained_intron 766-906 (orient:+) max_ev_support = 1 # spliced_intron 766-906 (orient:+) max_ev_support = 4 scaffold_732 + intron 766-906 asmbl_51633 scaffold_732 + retained_intron 766-906 asmbl_51634 // Retained and Spliced Intron # retained_intron 2408-2427 (orient:+) max_ev_support = 1 # spliced_intron 2408-2427 (orient:+) max_ev_support = 1 scaffold_736 + intron 2408-2427 asmbl_51638 scaffold_736 + retained_intron 2408-2427 asmbl_51639 // Exon Skipping and Retention # skipped_exon 14786-15882 (orient:-) max_ev_support = 3 # retained_exon 15594-15665 (orient:-) max_ev_support = 2 scaffold_8 - retained_exons 15594-15665 asmbl_51680 scaffold_8 - intron_skips_exon 14786-15882 asmbl_51679 // Retained and Spliced Intron # retained_intron 1207473-1207512 (orient:-) max_ev_support = 1 # spliced_intron 1207473-1207512 (orient:-) max_ev_support = 1 scaffold_8 - intron 1207473-1207512 asmbl_51699 scaffold_8 - retained_intron 1207473-1207512 asmbl_51700 // Retained and Spliced Intron # retained_intron 1207989-1208036 (orient:-) max_ev_support = 1 # spliced_intron 1207989-1208036 (orient:-) max_ev_support = 1 scaffold_8 - intron 1207989-1208036 asmbl_51699 scaffold_8 - retained_intron 1207989-1208036 asmbl_51700 // Retained and Spliced Intron # retained_intron 1801692-1801727 (orient:-) max_ev_support = 1 # spliced_intron 1801692-1801727 (orient:-) max_ev_support = 1 scaffold_8 - intron 1801692-1801727 asmbl_51707 scaffold_8 - retained_intron 1801692-1801727 asmbl_51705,asmbl_51706 // Retained and Spliced Intron # retained_intron 1801739-1801810 (orient:-) max_ev_support = 1 # spliced_intron 1801739-1801810 (orient:-) max_ev_support = 1 scaffold_8 - intron 1801739-1801810 asmbl_51705 scaffold_8 - retained_intron 1801739-1801810 asmbl_51707 // Retained and Spliced Intron # retained_intron 1801775-1801810 (orient:-) max_ev_support = 1 # spliced_intron 1801775-1801810 (orient:-) max_ev_support = 1 scaffold_8 - intron 1801775-1801810 asmbl_51706 scaffold_8 - retained_intron 1801775-1801810 asmbl_51707 // Exon Skipping and Retention # skipped_exon 2438124-2439404 (orient:-) max_ev_support = 2 # retained_exon 2438698-2438809 (orient:-) max_ev_support = 2 scaffold_8 - retained_exons 2438698-2438809 asmbl_51710 scaffold_8 - intron_skips_exon 2438124-2439404 asmbl_51711 // Retained and Spliced Intron # retained_intron 2655012-2655188 (orient:-) max_ev_support = 2 # spliced_intron 2655012-2655188 (orient:-) max_ev_support = 2 scaffold_8 - intron 2655012-2655188 asmbl_51713 scaffold_8 - retained_intron 2655012-2655188 asmbl_51712 // Exon Skipping and Retention # skipped_exon 2851215-2851882 (orient:-) max_ev_support = 2 # retained_exon 2851268-2851381 (orient:-) max_ev_support = 2 scaffold_8 - retained_exons 2851268-2851381 asmbl_51717 scaffold_8 - intron_skips_exon 2851215-2851882 asmbl_51718 // Exon Skipping and Retention # skipped_exon 2850138-2851267 (orient:-) max_ev_support = 2 # retained_exon 2851101-2851214 (orient:-) max_ev_support = 2 scaffold_8 - retained_exons 2851101-2851214 asmbl_51718 scaffold_8 - intron_skips_exon 2850138-2851267 asmbl_51717 // Retained and Spliced Intron # retained_intron 3101869-3101985 (orient:-) max_ev_support = 1 # spliced_intron 3101869-3101985 (orient:-) max_ev_support = 2 scaffold_8 - intron 3101869-3101985 asmbl_51730,asmbl_51732,asmbl_51733 scaffold_8 - retained_intron 3101869-3101985 asmbl_51731 // Retained and Spliced Intron # retained_intron 4194620-4194679 (orient:-) max_ev_support = 1 # spliced_intron 4194620-4194679 (orient:-) max_ev_support = 1 scaffold_8 - intron 4194620-4194679 asmbl_51761 scaffold_8 - retained_intron 4194620-4194679 asmbl_51760 // Retained and Spliced Intron # retained_intron 4194632-4194691 (orient:-) max_ev_support = 1 # spliced_intron 4194632-4194691 (orient:-) max_ev_support = 1 scaffold_8 - intron 4194632-4194691 asmbl_51759 scaffold_8 - retained_intron 4194632-4194691 asmbl_51760 // Exon Skipping and Retention # skipped_exon 4665045-4665532 (orient:-) max_ev_support = 1 # retained_exon 4665199-4665258 (orient:-) max_ev_support = 2 scaffold_8 - retained_exons 4665199-4665258 asmbl_51785 scaffold_8 - intron_skips_exon 4665045-4665532 asmbl_51786 // Retained and Spliced Intron # retained_intron 4783781-4783869 (orient:-) max_ev_support = 1 # spliced_intron 4783781-4783869 (orient:-) max_ev_support = 2 scaffold_8 - intron 4783781-4783869 asmbl_51797 scaffold_8 - retained_intron 4783781-4783869 asmbl_51798 // Retained and Spliced Intron # retained_intron 4784352-4784444 (orient:-) max_ev_support = 1 # spliced_intron 4784352-4784444 (orient:-) max_ev_support = 2 scaffold_8 - intron 4784352-4784444 asmbl_51797 scaffold_8 - retained_intron 4784352-4784444 asmbl_51798 // Retained and Spliced Intron # retained_intron 4860713-4860934 (orient:-) max_ev_support = 2 # spliced_intron 4860713-4860934 (orient:-) max_ev_support = 3 scaffold_8 - intron 4860713-4860934 asmbl_51812,asmbl_51814 scaffold_8 - retained_intron 4860713-4860934 asmbl_51813 // Retained and Spliced Intron # retained_intron 4860984-4861241 (orient:-) max_ev_support = 2 # spliced_intron 4860984-4861241 (orient:-) max_ev_support = 3 scaffold_8 - intron 4860984-4861241 asmbl_51812,asmbl_51814 scaffold_8 - retained_intron 4860984-4861241 asmbl_51813 // Retained and Spliced Intron # retained_intron 4859675-4859836 (orient:-) max_ev_support = 1 # spliced_intron 4859675-4859836 (orient:-) max_ev_support = 3 scaffold_8 - intron 4859675-4859836 asmbl_51812 scaffold_8 - retained_intron 4859675-4859836 asmbl_51814 // Retained and Spliced Intron # retained_intron 4859932-4860106 (orient:-) max_ev_support = 1 # spliced_intron 4859932-4860106 (orient:-) max_ev_support = 3 scaffold_8 - intron 4859932-4860106 asmbl_51812 scaffold_8 - retained_intron 4859932-4860106 asmbl_51814 // Retained and Spliced Intron # retained_intron 4960014-4960245 (orient:-) max_ev_support = 3 # spliced_intron 4960014-4960245 (orient:-) max_ev_support = 2 scaffold_8 - intron 4960014-4960245 asmbl_51819,asmbl_51820,asmbl_51822 scaffold_8 - retained_intron 4960014-4960245 asmbl_51818 // Retained and Spliced Intron # retained_intron 5216070-5216193 (orient:-) max_ev_support = 3 # spliced_intron 5216070-5216193 (orient:-) max_ev_support = 3 scaffold_8 - intron 5216070-5216193 asmbl_51828 scaffold_8 - retained_intron 5216070-5216193 asmbl_51827 // Retained and Spliced Intron # retained_intron 5314598-5314889 (orient:-) max_ev_support = 3 # spliced_intron 5314598-5314889 (orient:-) max_ev_support = 2 scaffold_8 - intron 5314598-5314889 asmbl_51832 scaffold_8 - retained_intron 5314598-5314889 asmbl_51831 // Retained and Spliced Intron # retained_intron 5554249-5554404 (orient:-) max_ev_support = 1 # spliced_intron 5554249-5554404 (orient:-) max_ev_support = 2 scaffold_8 - intron 5554249-5554404 asmbl_51836,asmbl_51837 scaffold_8 - retained_intron 5554249-5554404 asmbl_51838,asmbl_51839 // Retained and Spliced Intron # retained_intron 6018602-6018729 (orient:-) max_ev_support = 2 # spliced_intron 6018602-6018729 (orient:-) max_ev_support = 3 scaffold_8 - intron 6018602-6018729 asmbl_51857 scaffold_8 - retained_intron 6018602-6018729 asmbl_51858 // Retained and Spliced Intron # retained_intron 6018616-6018729 (orient:-) max_ev_support = 2 # spliced_intron 6018616-6018729 (orient:-) max_ev_support = 3 scaffold_8 - intron 6018616-6018729 asmbl_51856 scaffold_8 - retained_intron 6018616-6018729 asmbl_51858 // Retained and Spliced Intron # retained_intron 6159495-6159934 (orient:-) max_ev_support = 2 # spliced_intron 6159495-6159934 (orient:-) max_ev_support = 2 scaffold_8 - intron 6159495-6159934 asmbl_51862,asmbl_51868 scaffold_8 - retained_intron 6159495-6159934 asmbl_51861,asmbl_51865,asmbl_51866,asmbl_51867,asmbl_51869,asmbl_51870 // Retained and Spliced Intron # retained_intron 6160014-6160658 (orient:-) max_ev_support = 2 # spliced_intron 6160014-6160658 (orient:-) max_ev_support = 2 scaffold_8 - intron 6160014-6160658 asmbl_51862,asmbl_51867,asmbl_51869 scaffold_8 - retained_intron 6160014-6160658 asmbl_51861,asmbl_51865,asmbl_51866,asmbl_51868,asmbl_51870 // Retained and Spliced Intron # retained_intron 6160729-6160833 (orient:-) max_ev_support = 1 # spliced_intron 6160729-6160833 (orient:-) max_ev_support = 2 scaffold_8 - intron 6160729-6160833 asmbl_51861,asmbl_51862,asmbl_51867,asmbl_51868,asmbl_51869 scaffold_8 - retained_intron 6160729-6160833 asmbl_51865,asmbl_51866,asmbl_51870 // Retained and Spliced Intron # retained_intron 6161100-6161201 (orient:-) max_ev_support = 1 # spliced_intron 6161100-6161201 (orient:-) max_ev_support = 2 scaffold_8 - intron 6161100-6161201 asmbl_51861,asmbl_51862,asmbl_51866,asmbl_51868,asmbl_51869,asmbl_51870 scaffold_8 - retained_intron 6161100-6161201 asmbl_51865,asmbl_51867 // Retained and Spliced Intron # retained_intron 6161958-6162463 (orient:-) max_ev_support = 1 # spliced_intron 6161958-6162463 (orient:-) max_ev_support = 1 scaffold_8 - intron 6161958-6162463 asmbl_51869,asmbl_51870 scaffold_8 - retained_intron 6161958-6162463 asmbl_51865 // Retained and Spliced Intron # retained_intron 6163758-6164314 (orient:-) max_ev_support = 1 # spliced_intron 6163758-6164314 (orient:-) max_ev_support = 2 scaffold_8 - intron 6163758-6164314 asmbl_51861,asmbl_51862,asmbl_51866,asmbl_51867,asmbl_51868,asmbl_51869,asmbl_51870 scaffold_8 - retained_intron 6163758-6164314 asmbl_51865 // Retained and Spliced Intron # retained_intron 6161273-6161428 (orient:-) max_ev_support = 1 # spliced_intron 6161273-6161428 (orient:-) max_ev_support = 2 scaffold_8 - intron 6161273-6161428 asmbl_51861,asmbl_51862,asmbl_51865,asmbl_51866,asmbl_51868,asmbl_51869,asmbl_51870 scaffold_8 - retained_intron 6161273-6161428 asmbl_51867 // Exon Skipping and Retention # skipped_exon 6161958-6163631 (orient:-) max_ev_support = 2 # retained_exon 6162464-6162714 (orient:-) max_ev_support = 1 scaffold_8 - retained_exons 6162464-6162714 asmbl_51869 scaffold_8 - intron_skips_exon 6161958-6163631 asmbl_51861,asmbl_51862,asmbl_51866,asmbl_51867,asmbl_51868 // Exon Skipping and Retention # skipped_exon 6161958-6163631 (orient:-) max_ev_support = 2 # retained_exon 6162464-6162711 (orient:-) max_ev_support = 1 scaffold_8 - retained_exons 6162464-6162711 asmbl_51870 scaffold_8 - intron_skips_exon 6161958-6163631 asmbl_51861,asmbl_51862,asmbl_51866,asmbl_51867,asmbl_51868 // Retained and Spliced Intron # retained_intron 6321681-6321793 (orient:-) max_ev_support = 1 # spliced_intron 6321681-6321793 (orient:-) max_ev_support = 1 scaffold_8 - intron 6321681-6321793 asmbl_51879 scaffold_8 - retained_intron 6321681-6321793 asmbl_51878 // Exon Skipping and Retention # skipped_exon 6809136-6809444 (orient:-) max_ev_support = 2 # retained_exon 6809265-6809297 (orient:-) max_ev_support = 2 scaffold_8 - retained_exons 6809265-6809297 asmbl_51889 scaffold_8 - intron_skips_exon 6809136-6809444 asmbl_51888 // Exon Skipping and Retention # skipped_exon 7304586-7307284 (orient:-) max_ev_support = 2 # retained_exon 7306416-7306517 (orient:-) max_ev_support = 2 scaffold_8 - retained_exons 7306416-7306517 asmbl_51896 scaffold_8 - intron_skips_exon 7304586-7307284 asmbl_51895 // Retained and Spliced Intron # retained_intron 7446652-7446732 (orient:-) max_ev_support = 1 # spliced_intron 7446652-7446732 (orient:-) max_ev_support = 2 scaffold_8 - intron 7446652-7446732 asmbl_51904,asmbl_51905 scaffold_8 - retained_intron 7446652-7446732 asmbl_51906 // Retained and Spliced Intron # retained_intron 7482090-7482283 (orient:-) max_ev_support = 2 # spliced_intron 7482090-7482283 (orient:-) max_ev_support = 2 scaffold_8 - intron 7482090-7482283 asmbl_51911,asmbl_51914,asmbl_51915 scaffold_8 - retained_intron 7482090-7482283 asmbl_51912 // Retained and Spliced Intron # retained_intron 7483592-7484153 (orient:-) max_ev_support = 2 # spliced_intron 7483592-7484153 (orient:-) max_ev_support = 2 scaffold_8 - intron 7483592-7484153 asmbl_51911,asmbl_51915 scaffold_8 - retained_intron 7483592-7484153 asmbl_51913 // Retained and Spliced Intron # retained_intron 7484208-7484297 (orient:-) max_ev_support = 2 # spliced_intron 7484208-7484297 (orient:-) max_ev_support = 2 scaffold_8 - intron 7484208-7484297 asmbl_51911 scaffold_8 - retained_intron 7484208-7484297 asmbl_51913 // Retained and Spliced Intron # retained_intron 7482867-7483073 (orient:-) max_ev_support = 1 # spliced_intron 7482867-7483073 (orient:-) max_ev_support = 2 scaffold_8 - intron 7482867-7483073 asmbl_51911,asmbl_51915 scaffold_8 - retained_intron 7482867-7483073 asmbl_51914 // Retained and Spliced Intron # retained_intron 7483397-7483530 (orient:-) max_ev_support = 1 # spliced_intron 7483397-7483530 (orient:-) max_ev_support = 2 scaffold_8 - intron 7483397-7483530 asmbl_51911 scaffold_8 - retained_intron 7483397-7483530 asmbl_51915 // Retained and Spliced Intron # retained_intron 7804828-7805076 (orient:-) max_ev_support = 1 # spliced_intron 7804828-7805076 (orient:-) max_ev_support = 2 scaffold_8 - intron 7804828-7805076 asmbl_51924,asmbl_51925,asmbl_51927,asmbl_51929 scaffold_8 - retained_intron 7804828-7805076 asmbl_51926,asmbl_51928 // Retained and Spliced Intron # retained_intron 7805215-7805311 (orient:-) max_ev_support = 1 # spliced_intron 7805215-7805311 (orient:-) max_ev_support = 2 scaffold_8 - intron 7805215-7805311 asmbl_51924,asmbl_51925,asmbl_51927 scaffold_8 - retained_intron 7805215-7805311 asmbl_51926,asmbl_51928 // Retained and Spliced Intron # retained_intron 7807845-7807927 (orient:-) max_ev_support = 1 # spliced_intron 7807845-7807927 (orient:-) max_ev_support = 2 scaffold_8 - intron 7807845-7807927 asmbl_51924,asmbl_51925,asmbl_51926,asmbl_51927 scaffold_8 - retained_intron 7807845-7807927 asmbl_51928 // Retained and Spliced Intron # retained_intron 7804635-7804749 (orient:-) max_ev_support = 1 # spliced_intron 7804635-7804749 (orient:-) max_ev_support = 2 scaffold_8 - intron 7804635-7804749 asmbl_51924,asmbl_51925,asmbl_51926,asmbl_51927,asmbl_51928 scaffold_8 - retained_intron 7804635-7804749 asmbl_51929 // Retained and Spliced Intron # retained_intron 7984216-7984342 (orient:-) max_ev_support = 1 # spliced_intron 7984216-7984342 (orient:-) max_ev_support = 3 scaffold_8 - intron 7984216-7984342 asmbl_51939 scaffold_8 - retained_intron 7984216-7984342 asmbl_51940 // Retained and Spliced Intron # retained_intron 7986965-7987830 (orient:-) max_ev_support = 4 # spliced_intron 7986965-7987830 (orient:-) max_ev_support = 3 scaffold_8 - intron 7986965-7987830 asmbl_51942,asmbl_51944 scaffold_8 - retained_intron 7986965-7987830 asmbl_51941 // Retained and Spliced Intron # retained_intron 7986635-7986847 (orient:-) max_ev_support = 2 # spliced_intron 7986635-7986847 (orient:-) max_ev_support = 3 scaffold_8 - intron 7986635-7986847 asmbl_51941,asmbl_51942,asmbl_51944 scaffold_8 - retained_intron 7986635-7986847 asmbl_51943 // Retained and Spliced Intron # retained_intron 7985872-7986129 (orient:-) max_ev_support = 2 # spliced_intron 7985872-7986129 (orient:-) max_ev_support = 3 scaffold_8 - intron 7985872-7986129 asmbl_51941,asmbl_51942,asmbl_51943 scaffold_8 - retained_intron 7985872-7986129 asmbl_51944 // Retained and Spliced Intron # retained_intron 8607259-8607362 (orient:-) max_ev_support = 1 # spliced_intron 8607259-8607362 (orient:-) max_ev_support = 2 scaffold_8 - intron 8607259-8607362 asmbl_51965 scaffold_8 - retained_intron 8607259-8607362 asmbl_51967 // Retained and Spliced Intron # retained_intron 8901322-8902097 (orient:-) max_ev_support = 2 # spliced_intron 8901322-8902097 (orient:-) max_ev_support = 2 scaffold_8 - intron 8901322-8902097 asmbl_51981 scaffold_8 - retained_intron 8901322-8902097 asmbl_51980 // Retained and Spliced Intron # retained_intron 8901327-8902097 (orient:-) max_ev_support = 2 # spliced_intron 8901327-8902097 (orient:-) max_ev_support = 1 scaffold_8 - intron 8901327-8902097 asmbl_51982 scaffold_8 - retained_intron 8901327-8902097 asmbl_51980 // Retained and Spliced Intron # retained_intron 8970436-8970848 (orient:-) max_ev_support = 2 # spliced_intron 8970436-8970848 (orient:-) max_ev_support = 2 scaffold_8 - intron 8970436-8970848 asmbl_51983,asmbl_51986 scaffold_8 - retained_intron 8970436-8970848 asmbl_51984 // Retained and Spliced Intron # retained_intron 8969632-8969801 (orient:-) max_ev_support = 1 # spliced_intron 8969632-8969801 (orient:-) max_ev_support = 2 scaffold_8 - intron 8969632-8969801 asmbl_51983 scaffold_8 - retained_intron 8969632-8969801 asmbl_51986 // Retained and Spliced Intron # retained_intron 9112241-9112368 (orient:-) max_ev_support = 1 # spliced_intron 9112241-9112368 (orient:-) max_ev_support = 2 scaffold_8 - intron 9112241-9112368 asmbl_52000,asmbl_52001 scaffold_8 - retained_intron 9112241-9112368 asmbl_51999 // Retained and Spliced Intron # retained_intron 9112712-9112870 (orient:-) max_ev_support = 2 # spliced_intron 9112712-9112870 (orient:-) max_ev_support = 2 scaffold_8 - intron 9112712-9112870 asmbl_52000,asmbl_52001 scaffold_8 - retained_intron 9112712-9112870 asmbl_51999 // Retained and Spliced Intron # retained_intron 9122376-9122775 (orient:-) max_ev_support = 2 # spliced_intron 9122376-9122775 (orient:-) max_ev_support = 2 scaffold_8 - intron 9122376-9122775 asmbl_52003,asmbl_52004 scaffold_8 - retained_intron 9122376-9122775 asmbl_52005 // Exon Skipping and Retention # skipped_exon 9128050-9128801 (orient:-) max_ev_support = 1 # retained_exon 9128242-9128688 (orient:-) max_ev_support = 1 scaffold_8 - retained_exons 9128242-9128356,9128525-9128688 asmbl_52007,asmbl_52010 scaffold_8 - intron_skips_exon 9128050-9128801 asmbl_52009,asmbl_52011,asmbl_52012 // Exon Skipping and Retention # skipped_exon 9128357-9129084 (orient:-) max_ev_support = 1 # retained_exon 9128525-9128688 (orient:-) max_ev_support = 1 scaffold_8 - retained_exons 9128525-9128688 asmbl_52007,asmbl_52010 scaffold_8 - intron_skips_exon 9128357-9129084 asmbl_52008 // Exon Skipping and Retention # skipped_exon 9128689-9129575 (orient:-) max_ev_support = 1 # retained_exon 9129085-9129248 (orient:-) max_ev_support = 1 scaffold_8 - retained_exons 9129085-9129248 asmbl_52008 scaffold_8 - intron_skips_exon 9128689-9129575 asmbl_52007,asmbl_52010 // Exon Skipping and Retention # skipped_exon 9128689-9129575 (orient:-) max_ev_support = 1 # retained_exon 9128802-9129248 (orient:-) max_ev_support = 1 scaffold_8 - retained_exons 9128802-9128916,9129085-9129248 asmbl_52009,asmbl_52011,asmbl_52012 scaffold_8 - intron_skips_exon 9128689-9129575 asmbl_52007,asmbl_52010 // Exon Skipping and Retention # skipped_exon 9166127-9167025 (orient:-) max_ev_support = 1 # retained_exon 9166680-9166778 (orient:-) max_ev_support = 1 scaffold_8 - retained_exons 9166680-9166778 asmbl_52016,asmbl_52017,asmbl_52019 scaffold_8 - intron_skips_exon 9166127-9167025 asmbl_52018,asmbl_52020 // Exon Skipping and Retention # skipped_exon 9373145-9374067 (orient:-) max_ev_support = 1 # retained_exon 9373718-9373903 (orient:-) max_ev_support = 2 scaffold_8 - retained_exons 9373718-9373903 asmbl_52025,asmbl_52026,asmbl_52028,asmbl_52032 scaffold_8 - intron_skips_exon 9373145-9374067 asmbl_52027,asmbl_52030 // Retained and Spliced Intron # retained_intron 9467898-9467974 (orient:-) max_ev_support = 1 # spliced_intron 9467898-9467974 (orient:-) max_ev_support = 2 scaffold_8 - intron 9467898-9467974 asmbl_52035,asmbl_52037,asmbl_52038,asmbl_52039 scaffold_8 - retained_intron 9467898-9467974 asmbl_52036 // Retained and Spliced Intron # retained_intron 9467271-9467486 (orient:-) max_ev_support = 1 # spliced_intron 9467271-9467486 (orient:-) max_ev_support = 2 scaffold_8 - intron 9467271-9467486 asmbl_52035,asmbl_52036,asmbl_52038,asmbl_52039 scaffold_8 - retained_intron 9467271-9467486 asmbl_52037 // Retained and Spliced Intron # retained_intron 9465823-9465961 (orient:-) max_ev_support = 1 # spliced_intron 9465823-9465961 (orient:-) max_ev_support = 2 scaffold_8 - intron 9465823-9465961 asmbl_52035,asmbl_52036,asmbl_52037,asmbl_52039 scaffold_8 - retained_intron 9465823-9465961 asmbl_52038,asmbl_52040 // Retained and Spliced Intron # retained_intron 9466054-9466151 (orient:-) max_ev_support = 1 # spliced_intron 9466054-9466151 (orient:-) max_ev_support = 2 scaffold_8 - intron 9466054-9466151 asmbl_52035,asmbl_52036,asmbl_52037,asmbl_52039 scaffold_8 - retained_intron 9466054-9466151 asmbl_52038,asmbl_52040 // Retained and Spliced Intron # retained_intron 9466234-9466322 (orient:-) max_ev_support = 1 # spliced_intron 9466234-9466322 (orient:-) max_ev_support = 2 scaffold_8 - intron 9466234-9466322 asmbl_52035,asmbl_52036,asmbl_52037,asmbl_52039 scaffold_8 - retained_intron 9466234-9466322 asmbl_52038,asmbl_52040 // Retained and Spliced Intron # retained_intron 9468446-9468514 (orient:-) max_ev_support = 1 # spliced_intron 9468446-9468514 (orient:-) max_ev_support = 2 scaffold_8 - intron 9468446-9468514 asmbl_52035,asmbl_52036,asmbl_52037,asmbl_52038,asmbl_52041 scaffold_8 - retained_intron 9468446-9468514 asmbl_52039 // Retained and Spliced Intron # retained_intron 9872480-9872652 (orient:-) max_ev_support = 1 # spliced_intron 9872480-9872652 (orient:-) max_ev_support = 1 scaffold_8 - intron 9872480-9872652 asmbl_52059 scaffold_8 - retained_intron 9872480-9872652 asmbl_52060 // Retained and Spliced Intron # retained_intron 9872527-9872652 (orient:-) max_ev_support = 1 # spliced_intron 9872527-9872652 (orient:-) max_ev_support = 2 scaffold_8 - intron 9872527-9872652 asmbl_52058 scaffold_8 - retained_intron 9872527-9872652 asmbl_52060 // Retained and Spliced Intron # retained_intron 9903716-9903809 (orient:-) max_ev_support = 2 # spliced_intron 9903716-9903809 (orient:-) max_ev_support = 2 scaffold_8 - intron 9903716-9903809 asmbl_52063,asmbl_52064,asmbl_52066 scaffold_8 - retained_intron 9903716-9903809 asmbl_52065 // Retained and Spliced Intron # retained_intron 9904299-9904378 (orient:-) max_ev_support = 2 # spliced_intron 9904299-9904378 (orient:-) max_ev_support = 2 scaffold_8 - intron 9904299-9904378 asmbl_52063,asmbl_52064 scaffold_8 - retained_intron 9904299-9904378 asmbl_52066 // Exon Skipping and Retention # skipped_exon 9936478-9937030 (orient:-) max_ev_support = 1 # retained_exon 9936836-9936938 (orient:-) max_ev_support = 2 scaffold_8 - retained_exons 9936836-9936938 asmbl_52076,asmbl_52077 scaffold_8 - intron_skips_exon 9936478-9937030 asmbl_52079 // Retained and Spliced Intron # retained_intron 9937116-9937196 (orient:-) max_ev_support = 1 # spliced_intron 9937116-9937196 (orient:-) max_ev_support = 2 scaffold_8 - intron 9937116-9937196 asmbl_52076,asmbl_52079 scaffold_8 - retained_intron 9937116-9937196 asmbl_52077 // Exon Skipping and Retention # skipped_exon 10027223-10028131 (orient:-) max_ev_support = 1 # retained_exon 10027347-10027730 (orient:-) max_ev_support = 2 scaffold_8 - retained_exons 10027347-10027456,10027590-10027730 asmbl_52088 scaffold_8 - retained_exons 10027347-10027456,10027595-10027730 asmbl_52090 scaffold_8 - intron_skips_exon 10027223-10028131 asmbl_52089 // Retained and Spliced Intron # retained_intron 10040800-10041091 (orient:-) max_ev_support = 2 # spliced_intron 10040800-10041091 (orient:-) max_ev_support = 2 scaffold_8 - intron 10040800-10041091 asmbl_52093 scaffold_8 - retained_intron 10040800-10041091 asmbl_52092 // Retained and Spliced Intron # retained_intron 10040800-10041129 (orient:-) max_ev_support = 2 # spliced_intron 10040800-10041129 (orient:-) max_ev_support = 2 scaffold_8 - intron 10040800-10041129 asmbl_52091 scaffold_8 - retained_intron 10040800-10041129 asmbl_52092 // Retained and Spliced Intron # retained_intron 10059073-10059152 (orient:-) max_ev_support = 2 # spliced_intron 10059073-10059152 (orient:-) max_ev_support = 2 scaffold_8 - intron 10059073-10059152 asmbl_52095,asmbl_52096 scaffold_8 - retained_intron 10059073-10059152 asmbl_52098 // Retained and Spliced Intron # retained_intron 10059557-10059771 (orient:-) max_ev_support = 2 # spliced_intron 10059557-10059771 (orient:-) max_ev_support = 2 scaffold_8 - intron 10059557-10059771 asmbl_52095,asmbl_52096 scaffold_8 - retained_intron 10059557-10059771 asmbl_52098 // Exon Skipping and Retention # skipped_exon 10585517-10587677 (orient:-) max_ev_support = 2 # retained_exon 10586224-10586334 (orient:-) max_ev_support = 1 scaffold_8 - retained_exons 10586224-10586334 asmbl_52112 scaffold_8 - intron_skips_exon 10585517-10587677 asmbl_52111 // Retained and Spliced Intron # retained_intron 10601114-10601193 (orient:-) max_ev_support = 2 # spliced_intron 10601114-10601193 (orient:-) max_ev_support = 2 scaffold_8 - intron 10601114-10601193 asmbl_52114 scaffold_8 - retained_intron 10601114-10601193 asmbl_52113 // Exon Skipping and Retention # skipped_exon 11101511-11102291 (orient:-) max_ev_support = 2 # retained_exon 11101710-11101823 (orient:-) max_ev_support = 2 scaffold_8 - retained_exons 11101710-11101823 asmbl_52132,asmbl_52133 scaffold_8 - intron_skips_exon 11101511-11102291 asmbl_52131 // Exon Skipping and Retention # skipped_exon 11269758-11270824 (orient:-) max_ev_support = 2 # retained_exon 11270088-11270215 (orient:-) max_ev_support = 2 scaffold_8 - retained_exons 11270088-11270215 asmbl_52141 scaffold_8 - intron_skips_exon 11269758-11270824 asmbl_52140 // Retained and Spliced Intron # retained_intron 11270565-11270676 (orient:-) max_ev_support = 2 # spliced_intron 11270565-11270676 (orient:-) max_ev_support = 1 scaffold_8 - intron 11270565-11270676 asmbl_52142 scaffold_8 - retained_intron 11270565-11270676 asmbl_52141 // Retained and Spliced Intron # retained_intron 11277835-11278003 (orient:-) max_ev_support = 2 # spliced_intron 11277835-11278003 (orient:-) max_ev_support = 2 scaffold_8 - intron 11277835-11278003 asmbl_52145,asmbl_52146,asmbl_52147,asmbl_52148 scaffold_8 - retained_intron 11277835-11278003 asmbl_52144 // Retained and Spliced Intron # retained_intron 11278090-11278313 (orient:-) max_ev_support = 2 # spliced_intron 11278090-11278313 (orient:-) max_ev_support = 2 scaffold_8 - intron 11278090-11278313 asmbl_52145,asmbl_52146,asmbl_52147,asmbl_52148 scaffold_8 - retained_intron 11278090-11278313 asmbl_52144 // Retained and Spliced Intron # retained_intron 11279257-11280686 (orient:-) max_ev_support = 2 # spliced_intron 11279257-11280686 (orient:-) max_ev_support = 2 scaffold_8 - intron 11279257-11280686 asmbl_52145,asmbl_52147 scaffold_8 - retained_intron 11279257-11280686 asmbl_52146,asmbl_52148 // Retained and Spliced Intron # retained_intron 11278487-11279101 (orient:-) max_ev_support = 1 # spliced_intron 11278487-11279101 (orient:-) max_ev_support = 2 scaffold_8 - intron 11278487-11279101 asmbl_52145,asmbl_52146 scaffold_8 - retained_intron 11278487-11279101 asmbl_52147,asmbl_52148 // Exon Skipping and Retention # skipped_exon 11718423-11719070 (orient:-) max_ev_support = 2 # retained_exon 11718787-11718808 (orient:-) max_ev_support = 1 scaffold_8 - retained_exons 11718787-11718808 asmbl_52159 scaffold_8 - intron_skips_exon 11718423-11719070 asmbl_52158 // Exon Skipping and Retention # skipped_exon 11741924-11743764 (orient:-) max_ev_support = 2 # retained_exon 11742081-11742171 (orient:-) max_ev_support = 2 scaffold_8 - retained_exons 11742081-11742171 asmbl_52161 scaffold_8 - intron_skips_exon 11741924-11743764 asmbl_52162 // Retained and Spliced Intron # retained_intron 11760968-11761396 (orient:-) max_ev_support = 2 # spliced_intron 11760968-11761396 (orient:-) max_ev_support = 1 scaffold_8 - intron 11760968-11761396 asmbl_52166 scaffold_8 - retained_intron 11760968-11761396 asmbl_52164 // Retained and Spliced Intron # retained_intron 11760968-11761438 (orient:-) max_ev_support = 2 # spliced_intron 11760968-11761438 (orient:-) max_ev_support = 1 scaffold_8 - intron 11760968-11761438 asmbl_52165 scaffold_8 - retained_intron 11760968-11761438 asmbl_52164 // Retained and Spliced Intron # retained_intron 12124410-12124600 (orient:-) max_ev_support = 2 # spliced_intron 12124410-12124600 (orient:-) max_ev_support = 2 scaffold_8 - intron 12124410-12124600 asmbl_52183 scaffold_8 - retained_intron 12124410-12124600 asmbl_52184 // Retained and Spliced Intron # retained_intron 12193942-12194153 (orient:-) max_ev_support = 1 # spliced_intron 12193942-12194153 (orient:-) max_ev_support = 2 scaffold_8 - intron 12193942-12194153 asmbl_52186 scaffold_8 - retained_intron 12193942-12194153 asmbl_52185 // Retained and Spliced Intron # retained_intron 12194719-12195488 (orient:-) max_ev_support = 3 # spliced_intron 12194719-12195488 (orient:-) max_ev_support = 2 scaffold_8 - intron 12194719-12195488 asmbl_52186 scaffold_8 - retained_intron 12194719-12195488 asmbl_52185 // Exon Skipping and Retention # skipped_exon 12326039-12326530 (orient:-) max_ev_support = 1 # retained_exon 12326315-12326390 (orient:-) max_ev_support = 2 scaffold_8 - retained_exons 12326315-12326390 asmbl_52188,asmbl_52195 scaffold_8 - intron_skips_exon 12326039-12326530 asmbl_52194,asmbl_52196 // Retained and Spliced Intron # retained_intron 12625487-12625600 (orient:-) max_ev_support = 1 # spliced_intron 12625487-12625600 (orient:-) max_ev_support = 2 scaffold_8 - intron 12625487-12625600 asmbl_52212,asmbl_52214 scaffold_8 - retained_intron 12625487-12625600 asmbl_52213,asmbl_52215 // Retained and Spliced Intron # retained_intron 12625677-12626028 (orient:-) max_ev_support = 1 # spliced_intron 12625677-12626028 (orient:-) max_ev_support = 2 scaffold_8 - intron 12625677-12626028 asmbl_52212,asmbl_52213 scaffold_8 - retained_intron 12625677-12626028 asmbl_52214,asmbl_52215 // Retained and Spliced Intron # retained_intron 12626109-12626425 (orient:-) max_ev_support = 1 # spliced_intron 12626109-12626425 (orient:-) max_ev_support = 2 scaffold_8 - intron 12626109-12626425 asmbl_52212,asmbl_52213 scaffold_8 - retained_intron 12626109-12626425 asmbl_52214,asmbl_52215 // Exon Skipping and Retention # skipped_exon 12728585-12728827 (orient:-) max_ev_support = 1 # retained_exon 12728677-12728723 (orient:-) max_ev_support = 2 scaffold_8 - retained_exons 12728677-12728723 asmbl_52223 scaffold_8 - intron_skips_exon 12728585-12728827 asmbl_52224,asmbl_52225 // Retained and Spliced Intron # retained_intron 12728267-12728451 (orient:-) max_ev_support = 1 # spliced_intron 12728267-12728451 (orient:-) max_ev_support = 2 scaffold_8 - intron 12728267-12728451 asmbl_52223,asmbl_52225 scaffold_8 - retained_intron 12728267-12728451 asmbl_52224 // Exon Skipping and Retention # skipped_exon 12810394-12810817 (orient:-) max_ev_support = 2 # retained_exon 12810505-12810554 (orient:-) max_ev_support = 2 scaffold_8 - retained_exons 12810505-12810554 asmbl_52234 scaffold_8 - intron_skips_exon 12810394-12810817 asmbl_52233 // Exon Skipping and Retention # skipped_exon 12920184-12920588 (orient:-) max_ev_support = 1 # retained_exon 12920319-12920440 (orient:-) max_ev_support = 2 scaffold_8 - retained_exons 12920319-12920440 asmbl_52245,asmbl_52246,asmbl_52247,asmbl_52251,asmbl_52252 scaffold_8 - intron_skips_exon 12920184-12920588 asmbl_52257 // Retained and Spliced Intron # retained_intron 13132405-13133093 (orient:-) max_ev_support = 2 # spliced_intron 13132405-13133093 (orient:-) max_ev_support = 1 scaffold_8 - intron 13132405-13133093 asmbl_52267 scaffold_8 - retained_intron 13132405-13133093 asmbl_52266,asmbl_52268 // Retained and Spliced Intron # retained_intron 13132405-13133848 (orient:-) max_ev_support = 2 # spliced_intron 13132405-13133848 (orient:-) max_ev_support = 2 scaffold_8 - intron 13132405-13133848 asmbl_52265 scaffold_8 - retained_intron 13132405-13133848 asmbl_52266,asmbl_52268 // Retained and Spliced Intron # retained_intron 13133136-13133848 (orient:-) max_ev_support = 2 # spliced_intron 13133136-13133848 (orient:-) max_ev_support = 1 scaffold_8 - intron 13133136-13133848 asmbl_52267 scaffold_8 - retained_intron 13133136-13133848 asmbl_52266,asmbl_52268 // Exon Skipping and Retention # skipped_exon 13132405-13133848 (orient:-) max_ev_support = 2 # retained_exon 13133094-13133135 (orient:-) max_ev_support = 1 scaffold_8 - retained_exons 13133094-13133135 asmbl_52267 scaffold_8 - intron_skips_exon 13132405-13133848 asmbl_52265 // Retained and Spliced Intron # retained_intron 13138179-13138853 (orient:-) max_ev_support = 1 # spliced_intron 13138179-13138853 (orient:-) max_ev_support = 2 scaffold_8 - intron 13138179-13138853 asmbl_52265,asmbl_52266,asmbl_52267 scaffold_8 - retained_intron 13138179-13138853 asmbl_52268 // Exon Skipping and Retention # skipped_exon 13143912-13145374 (orient:-) max_ev_support = 1 # retained_exon 13144679-13144729 (orient:-) max_ev_support = 1 scaffold_8 - retained_exons 13144679-13144729 asmbl_52276,asmbl_52277 scaffold_8 - intron_skips_exon 13143912-13145374 asmbl_52275,asmbl_52278 // Retained and Spliced Intron # retained_intron 14134155-14134355 (orient:-) max_ev_support = 2 # spliced_intron 14134155-14134355 (orient:-) max_ev_support = 1 scaffold_8 - intron 14134155-14134355 asmbl_52296,asmbl_52297 scaffold_8 - retained_intron 14134155-14134355 asmbl_52295 // Retained and Spliced Intron # retained_intron 14134530-14135737 (orient:-) max_ev_support = 4 # spliced_intron 14134530-14135737 (orient:-) max_ev_support = 1 scaffold_8 - intron 14134530-14135737 asmbl_52297 scaffold_8 - retained_intron 14134530-14135737 asmbl_52295,asmbl_52296 // Exon Skipping and Retention # skipped_exon 14212489-14213428 (orient:-) max_ev_support = 1 # retained_exon 14213087-14213163 (orient:-) max_ev_support = 2 scaffold_8 - retained_exons 14213087-14213163 asmbl_52302 scaffold_8 - intron_skips_exon 14212489-14213428 asmbl_52303 // Exon Skipping and Retention # skipped_exon 15173646-15174113 (orient:-) max_ev_support = 1 # retained_exon 15173927-15174010 (orient:-) max_ev_support = 2 scaffold_8 - retained_exons 15173927-15174010 asmbl_52329 scaffold_8 - intron_skips_exon 15173646-15174113 asmbl_52331 // Exon Skipping and Retention # skipped_exon 16040106-16040586 (orient:-) max_ev_support = 2 # retained_exon 16040335-16040456 (orient:-) max_ev_support = 2 scaffold_8 - retained_exons 16040335-16040456 asmbl_52351 scaffold_8 - intron_skips_exon 16040106-16040586 asmbl_52352 // Retained and Spliced Intron # retained_intron 16040457-16040586 (orient:-) max_ev_support = 1 # spliced_intron 16040457-16040586 (orient:-) max_ev_support = 2 scaffold_8 - intron 16040457-16040586 asmbl_52351 scaffold_8 - retained_intron 16040457-16040586 asmbl_52353 // Retained and Spliced Intron # retained_intron 16141006-16141091 (orient:-) max_ev_support = 1 # spliced_intron 16141006-16141091 (orient:-) max_ev_support = 2 scaffold_8 - intron 16141006-16141091 asmbl_52364,asmbl_52366,asmbl_52367 scaffold_8 - retained_intron 16141006-16141091 asmbl_52365 // Retained and Spliced Intron # retained_intron 16142261-16142410 (orient:-) max_ev_support = 1 # spliced_intron 16142261-16142410 (orient:-) max_ev_support = 2 scaffold_8 - intron 16142261-16142410 asmbl_52364 scaffold_8 - retained_intron 16142261-16142410 asmbl_52367 // Retained and Spliced Intron # retained_intron 16278978-16279098 (orient:-) max_ev_support = 2 # spliced_intron 16278978-16279098 (orient:-) max_ev_support = 2 scaffold_8 - intron 16278978-16279098 asmbl_52381 scaffold_8 - retained_intron 16278978-16279098 asmbl_52380 // Retained and Spliced Intron # retained_intron 16274198-16274331 (orient:-) max_ev_support = 2 # spliced_intron 16274198-16274331 (orient:-) max_ev_support = 2 scaffold_8 - intron 16274198-16274331 asmbl_52380,asmbl_52381,asmbl_52383 scaffold_8 - retained_intron 16274198-16274331 asmbl_52382 // Exon Skipping and Retention # skipped_exon 16397415-16398401 (orient:-) max_ev_support = 1 # retained_exon 16397528-16397566 (orient:-) max_ev_support = 2 scaffold_8 - retained_exons 16397528-16397566 asmbl_52385 scaffold_8 - intron_skips_exon 16397415-16398401 asmbl_52392 // Retained and Spliced Intron # retained_intron 16397415-16397527 (orient:-) max_ev_support = 2 # spliced_intron 16397415-16397527 (orient:-) max_ev_support = 2 scaffold_8 - intron 16397415-16397527 asmbl_52385,asmbl_52387 scaffold_8 - retained_intron 16397415-16397527 asmbl_52386,asmbl_52388,asmbl_52394,asmbl_52395 // Retained and Spliced Intron # retained_intron 16397415-16398401 (orient:-) max_ev_support = 2 # spliced_intron 16397415-16398401 (orient:-) max_ev_support = 1 scaffold_8 - intron 16397415-16398401 asmbl_52392 scaffold_8 - retained_intron 16397415-16398401 asmbl_52386,asmbl_52388,asmbl_52394,asmbl_52395 // Retained and Spliced Intron # retained_intron 16397567-16398401 (orient:-) max_ev_support = 2 # spliced_intron 16397567-16398401 (orient:-) max_ev_support = 2 scaffold_8 - intron 16397567-16398401 asmbl_52385 scaffold_8 - retained_intron 16397567-16398401 asmbl_52386,asmbl_52387,asmbl_52388,asmbl_52394,asmbl_52395 // Retained and Spliced Intron # retained_intron 16398423-16398835 (orient:-) max_ev_support = 2 # spliced_intron 16398423-16398835 (orient:-) max_ev_support = 2 scaffold_8 - intron 16398423-16398835 asmbl_52385,asmbl_52386,asmbl_52387,asmbl_52392,asmbl_52395 scaffold_8 - retained_intron 16398423-16398835 asmbl_52388,asmbl_52394 // Retained and Spliced Intron # retained_intron 16396748-16397082 (orient:-) max_ev_support = 2 # spliced_intron 16396748-16397082 (orient:-) max_ev_support = 2 scaffold_8 - intron 16396748-16397082 asmbl_52385,asmbl_52386,asmbl_52387,asmbl_52388,asmbl_52392,asmbl_52394,asmbl_52395 scaffold_8 - retained_intron 16396748-16397082 asmbl_52389 // Retained and Spliced Intron # retained_intron 16392727-16393145 (orient:-) max_ev_support = 1 # spliced_intron 16392727-16393145 (orient:-) max_ev_support = 2 scaffold_8 - intron 16392727-16393145 asmbl_52385,asmbl_52386,asmbl_52387,asmbl_52388,asmbl_52389,asmbl_52392 scaffold_8 - retained_intron 16392727-16393145 asmbl_52394,asmbl_52395 // Retained and Spliced Intron # retained_intron 16502745-16503358 (orient:-) max_ev_support = 2 # spliced_intron 16502745-16503358 (orient:-) max_ev_support = 3 scaffold_8 - intron 16502745-16503358 asmbl_52405,asmbl_52419,asmbl_52420 scaffold_8 - retained_intron 16502745-16503358 asmbl_52402,asmbl_52404 // Retained and Spliced Intron # retained_intron 16502745-16503680 (orient:-) max_ev_support = 2 # spliced_intron 16502745-16503680 (orient:-) max_ev_support = 2 scaffold_8 - intron 16502745-16503680 asmbl_52403,asmbl_52409,asmbl_52411,asmbl_52413,asmbl_52414,asmbl_52415,asmbl_52416,asmbl_52417,asmbl_52418,asmbl_52421,asmbl_52422 scaffold_8 - retained_intron 16502745-16503680 asmbl_52402,asmbl_52404 // Retained and Spliced Intron # retained_intron 16503452-16503680 (orient:-) max_ev_support = 2 # spliced_intron 16503452-16503680 (orient:-) max_ev_support = 3 scaffold_8 - intron 16503452-16503680 asmbl_52405,asmbl_52419,asmbl_52420 scaffold_8 - retained_intron 16503452-16503680 asmbl_52402,asmbl_52404 // Retained and Spliced Intron # retained_intron 16503765-16503928 (orient:-) max_ev_support = 4 # spliced_intron 16503765-16503928 (orient:-) max_ev_support = 2 scaffold_8 - intron 16503765-16503928 asmbl_52411,asmbl_52414,asmbl_52415,asmbl_52417,asmbl_52418,asmbl_52422 scaffold_8 - retained_intron 16503765-16503928 asmbl_52402,asmbl_52403,asmbl_52404,asmbl_52409 // Exon Skipping and Retention # skipped_exon 16502745-16503680 (orient:-) max_ev_support = 2 # retained_exon 16503359-16503451 (orient:-) max_ev_support = 3 scaffold_8 - retained_exons 16503359-16503451 asmbl_52405,asmbl_52419,asmbl_52420 scaffold_8 - intron_skips_exon 16502745-16503680 asmbl_52403,asmbl_52409,asmbl_52411,asmbl_52413,asmbl_52414,asmbl_52415,asmbl_52416,asmbl_52417,asmbl_52418,asmbl_52421,asmbl_52422 // Retained and Spliced Intron # retained_intron 16505056-16505853 (orient:-) max_ev_support = 1 # spliced_intron 16505056-16505853 (orient:-) max_ev_support = 2 scaffold_8 - intron 16505056-16505853 asmbl_52411,asmbl_52414,asmbl_52416,asmbl_52417,asmbl_52418,asmbl_52421 scaffold_8 - retained_intron 16505056-16505853 asmbl_52405,asmbl_52413 // Retained and Spliced Intron # retained_intron 16501765-16501850 (orient:-) max_ev_support = 2 # spliced_intron 16501765-16501850 (orient:-) max_ev_support = 2 scaffold_8 - intron 16501765-16501850 asmbl_52403,asmbl_52404,asmbl_52411,asmbl_52413,asmbl_52415,asmbl_52416,asmbl_52417,asmbl_52418,asmbl_52419,asmbl_52420,asmbl_52421,asmbl_52422 scaffold_8 - retained_intron 16501765-16501850 asmbl_52410,asmbl_52414 // Retained and Spliced Intron # retained_intron 16501928-16502016 (orient:-) max_ev_support = 2 # spliced_intron 16501928-16502016 (orient:-) max_ev_support = 2 scaffold_8 - intron 16501928-16502016 asmbl_52403,asmbl_52404,asmbl_52411,asmbl_52413,asmbl_52414,asmbl_52415,asmbl_52416,asmbl_52417,asmbl_52418,asmbl_52419,asmbl_52420,asmbl_52421,asmbl_52422 scaffold_8 - retained_intron 16501928-16502016 asmbl_52410 // Retained and Spliced Intron # retained_intron 16499324-16499685 (orient:-) max_ev_support = 2 # spliced_intron 16499324-16499685 (orient:-) max_ev_support = 1 scaffold_8 - intron 16499324-16499685 asmbl_52420 scaffold_8 - retained_intron 16499324-16499685 asmbl_52411,asmbl_52413,asmbl_52418,asmbl_52422 // Retained and Spliced Intron # retained_intron 16499327-16499685 (orient:-) max_ev_support = 2 # spliced_intron 16499327-16499685 (orient:-) max_ev_support = 1 scaffold_8 - intron 16499327-16499685 asmbl_52403,asmbl_52404,asmbl_52415,asmbl_52416,asmbl_52417,asmbl_52419,asmbl_52421 scaffold_8 - retained_intron 16499327-16499685 asmbl_52411,asmbl_52413,asmbl_52418,asmbl_52422 // Exon Skipping and Retention # skipped_exon 16503765-16504947 (orient:-) max_ev_support = 3 # retained_exon 16503929-16504096 (orient:-) max_ev_support = 2 scaffold_8 - retained_exons 16503929-16504096 asmbl_52411,asmbl_52414,asmbl_52417,asmbl_52418,asmbl_52415 scaffold_8 - intron_skips_exon 16503765-16504947 asmbl_52405,asmbl_52413,asmbl_52416,asmbl_52419,asmbl_52420,asmbl_52421 // Exon Skipping and Retention # skipped_exon 16504097-16507019 (orient:-) max_ev_support = 1 # retained_exon 16504948-16506689 (orient:-) max_ev_support = 2 scaffold_8 - retained_exons 16504948-16505055,16505854-16506261,16506570-16506689 asmbl_52411,asmbl_52414,asmbl_52417,asmbl_52418,asmbl_52421 scaffold_8 - retained_exons 16504948-16506261,16506570-16506689 asmbl_52413 scaffold_8 - intron_skips_exon 16504097-16507019 asmbl_52415 // Exon Skipping and Retention # skipped_exon 16505056-16507019 (orient:-) max_ev_support = 1 # retained_exon 16505854-16506689 (orient:-) max_ev_support = 2 scaffold_8 - retained_exons 16505854-16506261,16506570-16506689 asmbl_52411,asmbl_52414,asmbl_52417,asmbl_52418,asmbl_52421 scaffold_8 - intron_skips_exon 16505056-16507019 asmbl_52420 // Retained and Spliced Intron # retained_intron 16499747-16501670 (orient:-) max_ev_support = 1 # spliced_intron 16499747-16501670 (orient:-) max_ev_support = 2 scaffold_8 - intron 16499747-16501670 asmbl_52403,asmbl_52404,asmbl_52411,asmbl_52415,asmbl_52416,asmbl_52417,asmbl_52419,asmbl_52420,asmbl_52421 scaffold_8 - retained_intron 16499747-16501670 asmbl_52413,asmbl_52418,asmbl_52422 // Retained and Spliced Intron # retained_intron 16576119-16576384 (orient:-) max_ev_support = 1 # spliced_intron 16576119-16576384 (orient:-) max_ev_support = 2 scaffold_8 - intron 16576119-16576384 asmbl_52429,asmbl_52431 scaffold_8 - retained_intron 16576119-16576384 asmbl_52430 // Retained and Spliced Intron # retained_intron 16619457-16619609 (orient:-) max_ev_support = 2 # spliced_intron 16619457-16619609 (orient:-) max_ev_support = 3 scaffold_8 - intron 16619457-16619609 asmbl_52432 scaffold_8 - retained_intron 16619457-16619609 asmbl_52433 // Retained and Spliced Intron # retained_intron 17284211-17284287 (orient:-) max_ev_support = 1 # spliced_intron 17284211-17284287 (orient:-) max_ev_support = 2 scaffold_8 - intron 17284211-17284287 asmbl_52438 scaffold_8 - retained_intron 17284211-17284287 asmbl_52439 // Retained and Spliced Intron # retained_intron 17284349-17284435 (orient:-) max_ev_support = 1 # spliced_intron 17284349-17284435 (orient:-) max_ev_support = 2 scaffold_8 - intron 17284349-17284435 asmbl_52438 scaffold_8 - retained_intron 17284349-17284435 asmbl_52439 // Exon Skipping and Retention # skipped_exon 17311618-17313674 (orient:-) max_ev_support = 2 # retained_exon 17313204-17313263 (orient:-) max_ev_support = 2 scaffold_8 - retained_exons 17313204-17313263 asmbl_52444 scaffold_8 - intron_skips_exon 17311618-17313674 asmbl_52443 // Exon Skipping and Retention # skipped_exon 17463643-17464507 (orient:-) max_ev_support = 2 # retained_exon 17464116-17464202 (orient:-) max_ev_support = 2 scaffold_8 - retained_exons 17464116-17464202 asmbl_52463 scaffold_8 - intron_skips_exon 17463643-17464507 asmbl_52462 // Exon Skipping and Retention # skipped_exon 17651645-17653997 (orient:-) max_ev_support = 2 # retained_exon 17651896-17651979 (orient:-) max_ev_support = 2 scaffold_8 - retained_exons 17651896-17651979 asmbl_52476 scaffold_8 - intron_skips_exon 17651645-17653997 asmbl_52477 // Exon Skipping and Retention # skipped_exon 17974030-17974808 (orient:-) max_ev_support = 1 # retained_exon 17974550-17974661 (orient:-) max_ev_support = 3 scaffold_8 - retained_exons 17974550-17974661 asmbl_52497 scaffold_8 - intron_skips_exon 17974030-17974808 asmbl_52498 // Exon Skipping and Retention # skipped_exon 17972241-17974549 (orient:-) max_ev_support = 3 # retained_exon 17973918-17974029 (orient:-) max_ev_support = 1 scaffold_8 - retained_exons 17973918-17974029 asmbl_52498 scaffold_8 - intron_skips_exon 17972241-17974549 asmbl_52497 // Retained and Spliced Intron # retained_intron 18084290-18084429 (orient:-) max_ev_support = 3 # spliced_intron 18084290-18084429 (orient:-) max_ev_support = 3 scaffold_8 - intron 18084290-18084429 asmbl_52502,asmbl_52504,asmbl_52507 scaffold_8 - retained_intron 18084290-18084429 asmbl_52503,asmbl_52506,asmbl_52508 // Retained and Spliced Intron # retained_intron 18084510-18084591 (orient:-) max_ev_support = 3 # spliced_intron 18084510-18084591 (orient:-) max_ev_support = 3 scaffold_8 - intron 18084510-18084591 asmbl_52502,asmbl_52504,asmbl_52505,asmbl_52506,asmbl_52507,asmbl_52508 scaffold_8 - retained_intron 18084510-18084591 asmbl_52503 // Retained and Spliced Intron # retained_intron 18084680-18084897 (orient:-) max_ev_support = 3 # spliced_intron 18084680-18084897 (orient:-) max_ev_support = 3 scaffold_8 - intron 18084680-18084897 asmbl_52502,asmbl_52504,asmbl_52506,asmbl_52507,asmbl_52508 scaffold_8 - retained_intron 18084680-18084897 asmbl_52503,asmbl_52505 // Retained and Spliced Intron # retained_intron 18161229-18161474 (orient:-) max_ev_support = 2 # spliced_intron 18161229-18161474 (orient:-) max_ev_support = 3 scaffold_8 - intron 18161229-18161474 asmbl_52513,asmbl_52515,asmbl_52516,asmbl_52517 scaffold_8 - retained_intron 18161229-18161474 asmbl_52514 // Retained and Spliced Intron # retained_intron 18162712-18162884 (orient:-) max_ev_support = 2 # spliced_intron 18162712-18162884 (orient:-) max_ev_support = 3 scaffold_8 - intron 18162712-18162884 asmbl_52513,asmbl_52514,asmbl_52517 scaffold_8 - retained_intron 18162712-18162884 asmbl_52515,asmbl_52516 // Retained and Spliced Intron # retained_intron 18163021-18163268 (orient:-) max_ev_support = 1 # spliced_intron 18163021-18163268 (orient:-) max_ev_support = 3 scaffold_8 - intron 18163021-18163268 asmbl_52513,asmbl_52514,asmbl_52515 scaffold_8 - retained_intron 18163021-18163268 asmbl_52516,asmbl_52517 // Retained and Spliced Intron # retained_intron 18248240-18248543 (orient:-) max_ev_support = 3 # spliced_intron 18248240-18248543 (orient:-) max_ev_support = 3 scaffold_8 - intron 18248240-18248543 asmbl_52525,asmbl_52526,asmbl_52527 scaffold_8 - retained_intron 18248240-18248543 asmbl_52524,asmbl_52529,asmbl_52530 // Retained and Spliced Intron # retained_intron 18248240-18248548 (orient:-) max_ev_support = 3 # spliced_intron 18248240-18248548 (orient:-) max_ev_support = 1 scaffold_8 - intron 18248240-18248548 asmbl_52531 scaffold_8 - retained_intron 18248240-18248548 asmbl_52524,asmbl_52529,asmbl_52530 // Retained and Spliced Intron # retained_intron 18249988-18250262 (orient:-) max_ev_support = 2 # spliced_intron 18249988-18250262 (orient:-) max_ev_support = 2 scaffold_8 - intron 18249988-18250262 asmbl_52527,asmbl_52529 scaffold_8 - retained_intron 18249988-18250262 asmbl_52526,asmbl_52530,asmbl_52531 // Exon Skipping and Retention # skipped_exon 18249797-18250058 (orient:-) max_ev_support = 3 # retained_exon 18249902-18249987 (orient:-) max_ev_support = 2 scaffold_8 - retained_exons 18249902-18249987 asmbl_52527,asmbl_52529 scaffold_8 - intron_skips_exon 18249797-18250058 asmbl_52524,asmbl_52525 // Retained and Spliced Intron # retained_intron 18442849-18443312 (orient:-) max_ev_support = 1 # spliced_intron 18442849-18443312 (orient:-) max_ev_support = 2 scaffold_8 - intron 18442849-18443312 asmbl_52542 scaffold_8 - retained_intron 18442849-18443312 asmbl_52543 // Retained and Spliced Intron # retained_intron 18573669-18573909 (orient:-) max_ev_support = 3 # spliced_intron 18573669-18573909 (orient:-) max_ev_support = 3 scaffold_8 - intron 18573669-18573909 asmbl_52556,asmbl_52558 scaffold_8 - retained_intron 18573669-18573909 asmbl_52557 // Retained and Spliced Intron # retained_intron 115861-115888 (orient:+) max_ev_support = 1 # spliced_intron 115861-115888 (orient:+) max_ev_support = 1 scaffold_8 + intron 115861-115888 asmbl_52648 scaffold_8 + retained_intron 115861-115888 asmbl_52647 // Exon Skipping and Retention # skipped_exon 739423-740608 (orient:+) max_ev_support = 1 # retained_exon 740014-740175 (orient:+) max_ev_support = 1 scaffold_8 + retained_exons 740014-740175 asmbl_52662 scaffold_8 + intron_skips_exon 739423-740608 asmbl_52663 // Exon Skipping and Retention # skipped_exon 738734-740013 (orient:+) max_ev_support = 1 # retained_exon 739261-739422 (orient:+) max_ev_support = 1 scaffold_8 + retained_exons 739261-739422 asmbl_52663 scaffold_8 + intron_skips_exon 738734-740013 asmbl_52662 // Retained and Spliced Intron # retained_intron 764211-764246 (orient:+) max_ev_support = 3 # spliced_intron 764211-764246 (orient:+) max_ev_support = 1 scaffold_8 + intron 764211-764246 asmbl_52668 scaffold_8 + retained_intron 764211-764246 asmbl_52667 // Exon Skipping and Retention # skipped_exon 1339847-1341081 (orient:+) max_ev_support = 1 # retained_exon 1340797-1340880 (orient:+) max_ev_support = 1 scaffold_8 + retained_exons 1340797-1340880 asmbl_52689 scaffold_8 + intron_skips_exon 1339847-1341081 asmbl_52690 // Exon Skipping and Retention # skipped_exon 1338884-1340796 (orient:+) max_ev_support = 1 # retained_exon 1339763-1339846 (orient:+) max_ev_support = 1 scaffold_8 + retained_exons 1339763-1339846 asmbl_52690 scaffold_8 + intron_skips_exon 1338884-1340796 asmbl_52689 // Retained and Spliced Intron # retained_intron 3433549-3433602 (orient:+) max_ev_support = 4 # spliced_intron 3433549-3433602 (orient:+) max_ev_support = 1 scaffold_8 + intron 3433549-3433602 asmbl_52762 scaffold_8 + retained_intron 3433549-3433602 asmbl_52761 // Exon Skipping and Retention # skipped_exon 3489917-3490757 (orient:+) max_ev_support = 2 # retained_exon 3490500-3490549 (orient:+) max_ev_support = 1 scaffold_8 + retained_exons 3490500-3490549 asmbl_52769,asmbl_52770 scaffold_8 + intron_skips_exon 3489917-3490757 asmbl_52768 // Exon Skipping and Retention # skipped_exon 3603543-3604638 (orient:+) max_ev_support = 2 # retained_exon 3604302-3604458 (orient:+) max_ev_support = 2 scaffold_8 + retained_exons 3604302-3604458 asmbl_52780 scaffold_8 + intron_skips_exon 3603543-3604638 asmbl_52781 // Retained and Spliced Intron # retained_intron 3615643-3615886 (orient:+) max_ev_support = 2 # spliced_intron 3615643-3615886 (orient:+) max_ev_support = 2 scaffold_8 + intron 3615643-3615886 asmbl_52784 scaffold_8 + retained_intron 3615643-3615886 asmbl_52785 // Retained and Spliced Intron # retained_intron 3615643-3615920 (orient:+) max_ev_support = 2 # spliced_intron 3615643-3615920 (orient:+) max_ev_support = 1 scaffold_8 + intron 3615643-3615920 asmbl_52789 scaffold_8 + retained_intron 3615643-3615920 asmbl_52785 // Retained and Spliced Intron # retained_intron 3615695-3615920 (orient:+) max_ev_support = 2 # spliced_intron 3615695-3615920 (orient:+) max_ev_support = 1 scaffold_8 + intron 3615695-3615920 asmbl_52790 scaffold_8 + retained_intron 3615695-3615920 asmbl_52785 // Retained and Spliced Intron # retained_intron 3796351-3797087 (orient:+) max_ev_support = 5 # spliced_intron 3796351-3797087 (orient:+) max_ev_support = 1 scaffold_8 + intron 3796351-3797087 asmbl_52804 scaffold_8 + retained_intron 3796351-3797087 asmbl_52803 // Retained and Spliced Intron # retained_intron 4082268-4082465 (orient:+) max_ev_support = 1 # spliced_intron 4082268-4082465 (orient:+) max_ev_support = 3 scaffold_8 + intron 4082268-4082465 asmbl_52809,asmbl_52810,asmbl_52813 scaffold_8 + retained_intron 4082268-4082465 asmbl_52811 // Retained and Spliced Intron # retained_intron 4081520-4081648 (orient:+) max_ev_support = 1 # spliced_intron 4081520-4081648 (orient:+) max_ev_support = 3 scaffold_8 + intron 4081520-4081648 asmbl_52809,asmbl_52810,asmbl_52811 scaffold_8 + retained_intron 4081520-4081648 asmbl_52813 // Retained and Spliced Intron # retained_intron 4083068-4083191 (orient:+) max_ev_support = 1 # spliced_intron 4083068-4083191 (orient:+) max_ev_support = 3 scaffold_8 + intron 4083068-4083191 asmbl_52809,asmbl_52810,asmbl_52811,asmbl_52813 scaffold_8 + retained_intron 4083068-4083191 asmbl_52814 // Retained and Spliced Intron # retained_intron 4186166-4186288 (orient:+) max_ev_support = 1 # spliced_intron 4186166-4186288 (orient:+) max_ev_support = 2 scaffold_8 + intron 4186166-4186288 asmbl_52817,asmbl_52820 scaffold_8 + retained_intron 4186166-4186288 asmbl_52819 // Retained and Spliced Intron # retained_intron 4186377-4186485 (orient:+) max_ev_support = 1 # spliced_intron 4186377-4186485 (orient:+) max_ev_support = 2 scaffold_8 + intron 4186377-4186485 asmbl_52817 scaffold_8 + retained_intron 4186377-4186485 asmbl_52819,asmbl_52820 // Retained and Spliced Intron # retained_intron 4234132-4234567 (orient:+) max_ev_support = 2 # spliced_intron 4234132-4234567 (orient:+) max_ev_support = 2 scaffold_8 + intron 4234132-4234567 asmbl_52824,asmbl_52826 scaffold_8 + retained_intron 4234132-4234567 asmbl_52825 // Retained and Spliced Intron # retained_intron 4233387-4233662 (orient:+) max_ev_support = 1 # spliced_intron 4233387-4233662 (orient:+) max_ev_support = 2 scaffold_8 + intron 4233387-4233662 asmbl_52824,asmbl_52825 scaffold_8 + retained_intron 4233387-4233662 asmbl_52826 // Retained and Spliced Intron # retained_intron 4287919-4288179 (orient:+) max_ev_support = 4 # spliced_intron 4287919-4288179 (orient:+) max_ev_support = 1 scaffold_8 + intron 4287919-4288179 asmbl_52828 scaffold_8 + retained_intron 4287919-4288179 asmbl_52827 // Retained and Spliced Intron # retained_intron 4299829-4300052 (orient:+) max_ev_support = 1 # spliced_intron 4299829-4300052 (orient:+) max_ev_support = 2 scaffold_8 + intron 4299829-4300052 asmbl_52829 scaffold_8 + retained_intron 4299829-4300052 asmbl_52830 // Retained and Spliced Intron # retained_intron 4340886-4341174 (orient:+) max_ev_support = 2 # spliced_intron 4340886-4341174 (orient:+) max_ev_support = 2 scaffold_8 + intron 4340886-4341174 asmbl_52838 scaffold_8 + retained_intron 4340886-4341174 asmbl_52837 // Exon Skipping and Retention # skipped_exon 4340424-4341174 (orient:+) max_ev_support = 2 # retained_exon 4340618-4340885 (orient:+) max_ev_support = 2 scaffold_8 + retained_exons 4340618-4340885 asmbl_52838 scaffold_8 + intron_skips_exon 4340424-4341174 asmbl_52836 // Retained and Spliced Intron # retained_intron 4350354-4350381 (orient:+) max_ev_support = 3 # spliced_intron 4350354-4350381 (orient:+) max_ev_support = 1 scaffold_8 + intron 4350354-4350381 asmbl_52842 scaffold_8 + retained_intron 4350354-4350381 asmbl_52839 // Retained and Spliced Intron # retained_intron 4393829-4393852 (orient:+) max_ev_support = 4 # spliced_intron 4393829-4393852 (orient:+) max_ev_support = 1 scaffold_8 + intron 4393829-4393852 asmbl_52847 scaffold_8 + retained_intron 4393829-4393852 asmbl_52846 // Retained and Spliced Intron # retained_intron 4851222-4851393 (orient:+) max_ev_support = 1 # spliced_intron 4851222-4851393 (orient:+) max_ev_support = 2 scaffold_8 + intron 4851222-4851393 asmbl_52858 scaffold_8 + retained_intron 4851222-4851393 asmbl_52859 // Retained and Spliced Intron # retained_intron 4852233-4852322 (orient:+) max_ev_support = 2 # spliced_intron 4852233-4852322 (orient:+) max_ev_support = 3 scaffold_8 + intron 4852233-4852322 asmbl_52858,asmbl_52859 scaffold_8 + retained_intron 4852233-4852322 asmbl_52860,asmbl_52863 // Retained and Spliced Intron # retained_intron 4852903-4853082 (orient:+) max_ev_support = 2 # spliced_intron 4852903-4853082 (orient:+) max_ev_support = 3 scaffold_8 + intron 4852903-4853082 asmbl_52858,asmbl_52859,asmbl_52861,asmbl_52863 scaffold_8 + retained_intron 4852903-4853082 asmbl_52862 // Retained and Spliced Intron # retained_intron 4865417-4865526 (orient:+) max_ev_support = 1 # spliced_intron 4865417-4865526 (orient:+) max_ev_support = 2 scaffold_8 + intron 4865417-4865526 asmbl_52865 scaffold_8 + retained_intron 4865417-4865526 asmbl_52866 // Retained and Spliced Intron # retained_intron 4873126-4873930 (orient:+) max_ev_support = 3 # spliced_intron 4873126-4873930 (orient:+) max_ev_support = 2 scaffold_8 + intron 4873126-4873930 asmbl_52870,asmbl_52872 scaffold_8 + retained_intron 4873126-4873930 asmbl_52867,asmbl_52868 // Exon Skipping and Retention # skipped_exon 4870929-4871742 (orient:+) max_ev_support = 2 # retained_exon 4871128-4871175 (orient:+) max_ev_support = 2 scaffold_8 + retained_exons 4871128-4871175 asmbl_52869,asmbl_52872 scaffold_8 + intron_skips_exon 4870929-4871742 asmbl_52868,asmbl_52870,asmbl_52871 // Exon Skipping and Retention # skipped_exon 4872344-4873930 (orient:+) max_ev_support = 2 # retained_exon 4873092-4873125 (orient:+) max_ev_support = 2 scaffold_8 + retained_exons 4873092-4873125 asmbl_52870,asmbl_52872 scaffold_8 + intron_skips_exon 4872344-4873930 asmbl_52869,asmbl_52871 // Retained and Spliced Intron # retained_intron 4899967-4900064 (orient:+) max_ev_support = 1 # spliced_intron 4899967-4900064 (orient:+) max_ev_support = 2 scaffold_8 + intron 4899967-4900064 asmbl_52873,asmbl_52874,asmbl_52879 scaffold_8 + retained_intron 4899967-4900064 asmbl_52878 // Retained and Spliced Intron # retained_intron 5433842-5433940 (orient:+) max_ev_support = 1 # spliced_intron 5433842-5433940 (orient:+) max_ev_support = 2 scaffold_8 + intron 5433842-5433940 asmbl_52884,asmbl_52885,asmbl_52887 scaffold_8 + retained_intron 5433842-5433940 asmbl_52886 // Retained and Spliced Intron # retained_intron 5433999-5434119 (orient:+) max_ev_support = 1 # spliced_intron 5433999-5434119 (orient:+) max_ev_support = 2 scaffold_8 + intron 5433999-5434119 asmbl_52884,asmbl_52887 scaffold_8 + retained_intron 5433999-5434119 asmbl_52886 // Retained and Spliced Intron # retained_intron 5433999-5434185 (orient:+) max_ev_support = 1 # spliced_intron 5433999-5434185 (orient:+) max_ev_support = 1 scaffold_8 + intron 5433999-5434185 asmbl_52885 scaffold_8 + retained_intron 5433999-5434185 asmbl_52886 // Exon Skipping and Retention # skipped_exon 5760911-5762372 (orient:+) max_ev_support = 1 # retained_exon 5761387-5761428 (orient:+) max_ev_support = 2 scaffold_8 + retained_exons 5761387-5761428 asmbl_52906 scaffold_8 + intron_skips_exon 5760911-5762372 asmbl_52907 // Exon Skipping and Retention # skipped_exon 5761429-5763686 (orient:+) max_ev_support = 2 # retained_exon 5762373-5762414 (orient:+) max_ev_support = 1 scaffold_8 + retained_exons 5762373-5762414 asmbl_52907 scaffold_8 + intron_skips_exon 5761429-5763686 asmbl_52906 // Retained and Spliced Intron # retained_intron 5857393-5857551 (orient:+) max_ev_support = 2 # spliced_intron 5857393-5857551 (orient:+) max_ev_support = 5 scaffold_8 + intron 5857393-5857551 asmbl_52909,asmbl_52910,asmbl_52911 scaffold_8 + retained_intron 5857393-5857551 asmbl_52912,asmbl_52914 // Retained and Spliced Intron # retained_intron 5968674-5968800 (orient:+) max_ev_support = 1 # spliced_intron 5968674-5968800 (orient:+) max_ev_support = 2 scaffold_8 + intron 5968674-5968800 asmbl_52917 scaffold_8 + retained_intron 5968674-5968800 asmbl_52918 // Retained and Spliced Intron # retained_intron 5968927-5969108 (orient:+) max_ev_support = 1 # spliced_intron 5968927-5969108 (orient:+) max_ev_support = 2 scaffold_8 + intron 5968927-5969108 asmbl_52917,asmbl_52919 scaffold_8 + retained_intron 5968927-5969108 asmbl_52918 // Retained and Spliced Intron # retained_intron 6019010-6019279 (orient:+) max_ev_support = 4 # spliced_intron 6019010-6019279 (orient:+) max_ev_support = 2 scaffold_8 + intron 6019010-6019279 asmbl_52922 scaffold_8 + retained_intron 6019010-6019279 asmbl_52920 // Retained and Spliced Intron # retained_intron 6019135-6019279 (orient:+) max_ev_support = 4 # spliced_intron 6019135-6019279 (orient:+) max_ev_support = 2 scaffold_8 + intron 6019135-6019279 asmbl_52921 scaffold_8 + retained_intron 6019135-6019279 asmbl_52920 // Retained and Spliced Intron # retained_intron 6029233-6029335 (orient:+) max_ev_support = 1 # spliced_intron 6029233-6029335 (orient:+) max_ev_support = 1 scaffold_8 + intron 6029233-6029335 asmbl_52926,asmbl_52927,asmbl_52929,asmbl_52930,asmbl_52931 scaffold_8 + retained_intron 6029233-6029335 asmbl_52924 // Retained and Spliced Intron # retained_intron 6027967-6028061 (orient:+) max_ev_support = 1 # spliced_intron 6027967-6028061 (orient:+) max_ev_support = 1 scaffold_8 + intron 6027967-6028061 asmbl_52924,asmbl_52926,asmbl_52927,asmbl_52929,asmbl_52930 scaffold_8 + retained_intron 6027967-6028061 asmbl_52925 // Retained and Spliced Intron # retained_intron 6028690-6028824 (orient:+) max_ev_support = 1 # spliced_intron 6028690-6028824 (orient:+) max_ev_support = 1 scaffold_8 + intron 6028690-6028824 asmbl_52924,asmbl_52926,asmbl_52929,asmbl_52930 scaffold_8 + retained_intron 6028690-6028824 asmbl_52927,asmbl_52931 // Retained and Spliced Intron # retained_intron 6028914-6029014 (orient:+) max_ev_support = 1 # spliced_intron 6028914-6029014 (orient:+) max_ev_support = 1 scaffold_8 + intron 6028914-6029014 asmbl_52924,asmbl_52926,asmbl_52929,asmbl_52930,asmbl_52931 scaffold_8 + retained_intron 6028914-6029014 asmbl_52927 // Retained and Spliced Intron # retained_intron 6028190-6028278 (orient:+) max_ev_support = 1 # spliced_intron 6028190-6028278 (orient:+) max_ev_support = 1 scaffold_8 + intron 6028190-6028278 asmbl_52924,asmbl_52926,asmbl_52927,asmbl_52929 scaffold_8 + retained_intron 6028190-6028278 asmbl_52930 // Retained and Spliced Intron # retained_intron 6028315-6028414 (orient:+) max_ev_support = 1 # spliced_intron 6028315-6028414 (orient:+) max_ev_support = 1 scaffold_8 + intron 6028315-6028414 asmbl_52924,asmbl_52926,asmbl_52927,asmbl_52929 scaffold_8 + retained_intron 6028315-6028414 asmbl_52930 // Retained and Spliced Intron # retained_intron 6036917-6037004 (orient:+) max_ev_support = 2 # spliced_intron 6036917-6037004 (orient:+) max_ev_support = 3 scaffold_8 + intron 6036917-6037004 asmbl_52932 scaffold_8 + retained_intron 6036917-6037004 asmbl_52933,asmbl_52934 // Exon Skipping and Retention # skipped_exon 6119515-6122214 (orient:+) max_ev_support = 1 # retained_exon 6120972-6121052 (orient:+) max_ev_support = 3 scaffold_8 + retained_exons 6120972-6121052 asmbl_52938 scaffold_8 + intron_skips_exon 6119515-6122214 asmbl_52939 // Retained and Spliced Intron # retained_intron 6307610-6307748 (orient:+) max_ev_support = 1 # spliced_intron 6307610-6307748 (orient:+) max_ev_support = 2 scaffold_8 + intron 6307610-6307748 asmbl_52959,asmbl_52961 scaffold_8 + retained_intron 6307610-6307748 asmbl_52963 // Retained and Spliced Intron # retained_intron 6309352-6309452 (orient:+) max_ev_support = 1 # spliced_intron 6309352-6309452 (orient:+) max_ev_support = 2 scaffold_8 + intron 6309352-6309452 asmbl_52959,asmbl_52960,asmbl_52963 scaffold_8 + retained_intron 6309352-6309452 asmbl_52964 // Retained and Spliced Intron # retained_intron 6714778-6715271 (orient:+) max_ev_support = 3 # spliced_intron 6714778-6715271 (orient:+) max_ev_support = 3 scaffold_8 + intron 6714778-6715271 asmbl_52966 scaffold_8 + retained_intron 6714778-6715271 asmbl_52967 // Retained and Spliced Intron # retained_intron 7508319-7508462 (orient:+) max_ev_support = 3 # spliced_intron 7508319-7508462 (orient:+) max_ev_support = 2 scaffold_8 + intron 7508319-7508462 asmbl_52991 scaffold_8 + retained_intron 7508319-7508462 asmbl_52990 // Retained and Spliced Intron # retained_intron 8180856-8181693 (orient:+) max_ev_support = 1 # spliced_intron 8180856-8181693 (orient:+) max_ev_support = 2 scaffold_8 + intron 8180856-8181693 asmbl_53004,asmbl_53005,asmbl_53006,asmbl_53007 scaffold_8 + retained_intron 8180856-8181693 asmbl_53008 // Retained and Spliced Intron # retained_intron 8600253-8600327 (orient:+) max_ev_support = 1 # spliced_intron 8600253-8600327 (orient:+) max_ev_support = 2 scaffold_8 + intron 8600253-8600327 asmbl_53016 scaffold_8 + retained_intron 8600253-8600327 asmbl_53017 // Retained and Spliced Intron # retained_intron 8733193-8733226 (orient:+) max_ev_support = 3 # spliced_intron 8733193-8733226 (orient:+) max_ev_support = 1 scaffold_8 + intron 8733193-8733226 asmbl_53030 scaffold_8 + retained_intron 8733193-8733226 asmbl_53028,asmbl_53029 // Retained and Spliced Intron # retained_intron 8733303-8733398 (orient:+) max_ev_support = 5 # spliced_intron 8733303-8733398 (orient:+) max_ev_support = 1 scaffold_8 + intron 8733303-8733398 asmbl_53029,asmbl_53030 scaffold_8 + retained_intron 8733303-8733398 asmbl_53028 // Exon Skipping and Retention # skipped_exon 8739454-8740005 (orient:+) max_ev_support = 2 # retained_exon 8739602-8739721 (orient:+) max_ev_support = 2 scaffold_8 + retained_exons 8739602-8739721 asmbl_53031 scaffold_8 + intron_skips_exon 8739454-8740005 asmbl_53032 // Exon Skipping and Retention # skipped_exon 9532175-9533624 (orient:+) max_ev_support = 1 # retained_exon 9532747-9533463 (orient:+) max_ev_support = 5 scaffold_8 + retained_exons 9532747-9533118,9533257-9533463 asmbl_53083 scaffold_8 + intron_skips_exon 9532175-9533624 asmbl_53084 // Retained and Spliced Intron # retained_intron 9586999-9587093 (orient:+) max_ev_support = 1 # spliced_intron 9586999-9587093 (orient:+) max_ev_support = 2 scaffold_8 + intron 9586999-9587093 asmbl_53085,asmbl_53087,asmbl_53088 scaffold_8 + retained_intron 9586999-9587093 asmbl_53089 // Retained and Spliced Intron # retained_intron 9651612-9651635 (orient:+) max_ev_support = 1 # spliced_intron 9651612-9651635 (orient:+) max_ev_support = 1 scaffold_8 + intron 9651612-9651635 asmbl_53096,asmbl_53097,asmbl_53098 scaffold_8 + retained_intron 9651612-9651635 asmbl_53092,asmbl_53093,asmbl_53094,asmbl_53095 // Exon Skipping and Retention # skipped_exon 9696519-9698018 (orient:+) max_ev_support = 2 # retained_exon 9697152-9697319 (orient:+) max_ev_support = 2 scaffold_8 + retained_exons 9697152-9697319 asmbl_53100,asmbl_53101 scaffold_8 + intron_skips_exon 9696519-9698018 asmbl_53099 // Retained and Spliced Intron # retained_intron 9811870-9812023 (orient:+) max_ev_support = 2 # spliced_intron 9811870-9812023 (orient:+) max_ev_support = 2 scaffold_8 + intron 9811870-9812023 asmbl_53108 scaffold_8 + retained_intron 9811870-9812023 asmbl_53107 // Retained and Spliced Intron # retained_intron 9819500-9819912 (orient:+) max_ev_support = 3 # spliced_intron 9819500-9819912 (orient:+) max_ev_support = 3 scaffold_8 + intron 9819500-9819912 asmbl_53109 scaffold_8 + retained_intron 9819500-9819912 asmbl_53110 // Exon Skipping and Retention # skipped_exon 9866167-9867156 (orient:+) max_ev_support = 1 # retained_exon 9866264-9866359 (orient:+) max_ev_support = 2 scaffold_8 + retained_exons 9866264-9866359 asmbl_53117,asmbl_53119,asmbl_53120,asmbl_53121 scaffold_8 + intron_skips_exon 9866167-9867156 asmbl_53118 // Exon Skipping and Retention # skipped_exon 9868367-9869282 (orient:+) max_ev_support = 1 # retained_exon 9868875-9868994 (orient:+) max_ev_support = 2 scaffold_8 + retained_exons 9868875-9868994 asmbl_53117,asmbl_53118,asmbl_53119,asmbl_53123 scaffold_8 + intron_skips_exon 9868367-9869282 asmbl_53120,asmbl_53121,asmbl_53122,asmbl_53124 // Exon Skipping and Retention # skipped_exon 9867463-9868250 (orient:+) max_ev_support = 2 # retained_exon 9867562-9867573 (orient:+) max_ev_support = 1 scaffold_8 + retained_exons 9867562-9867573 asmbl_53119,asmbl_53120 scaffold_8 + intron_skips_exon 9867463-9868250 asmbl_53117,asmbl_53118,asmbl_53121 // Exon Skipping and Retention # skipped_exon 9881810-9883103 (orient:+) max_ev_support = 2 # retained_exon 9882143-9882528 (orient:+) max_ev_support = 2 scaffold_8 + retained_exons 9882143-9882246,9882405-9882528 asmbl_53129 scaffold_8 + intron_skips_exon 9881810-9883103 asmbl_53128 // Retained and Spliced Intron # retained_intron 9885234-9885406 (orient:+) max_ev_support = 1 # spliced_intron 9885234-9885406 (orient:+) max_ev_support = 3 scaffold_8 + intron 9885234-9885406 asmbl_53131 scaffold_8 + retained_intron 9885234-9885406 asmbl_53132 // Exon Skipping and Retention # skipped_exon 10211267-10211751 (orient:+) max_ev_support = 3 # retained_exon 10211399-10211437 (orient:+) max_ev_support = 3 scaffold_8 + retained_exons 10211399-10211437 asmbl_53154 scaffold_8 + intron_skips_exon 10211267-10211751 asmbl_53155 // Exon Skipping and Retention # skipped_exon 10238810-10239921 (orient:+) max_ev_support = 2 # retained_exon 10239507-10239563 (orient:+) max_ev_support = 2 scaffold_8 + retained_exons 10239507-10239563 asmbl_53162,asmbl_53167 scaffold_8 + intron_skips_exon 10238810-10239921 asmbl_53161 // Retained and Spliced Intron # retained_intron 10239564-10239921 (orient:+) max_ev_support = 2 # spliced_intron 10239564-10239921 (orient:+) max_ev_support = 2 scaffold_8 + intron 10239564-10239921 asmbl_53162,asmbl_53167 scaffold_8 + retained_intron 10239564-10239921 asmbl_53163,asmbl_53164 // Retained and Spliced Intron # retained_intron 10240030-10240454 (orient:+) max_ev_support = 2 # spliced_intron 10240030-10240454 (orient:+) max_ev_support = 2 scaffold_8 + intron 10240030-10240454 asmbl_53161,asmbl_53162,asmbl_53163,asmbl_53164,asmbl_53167 scaffold_8 + retained_intron 10240030-10240454 asmbl_53165 // Retained and Spliced Intron # retained_intron 10245429-10245640 (orient:+) max_ev_support = 1 # spliced_intron 10245429-10245640 (orient:+) max_ev_support = 2 scaffold_8 + intron 10245429-10245640 asmbl_53161,asmbl_53162,asmbl_53163,asmbl_53166 scaffold_8 + retained_intron 10245429-10245640 asmbl_53167 // Exon Skipping and Retention # skipped_exon 10482617-10484569 (orient:+) max_ev_support = 2 # retained_exon 10484123-10484486 (orient:+) max_ev_support = 2 scaffold_8 + retained_exons 10484123-10484272,10484364-10484486 asmbl_53172 scaffold_8 + intron_skips_exon 10482617-10484569 asmbl_53171 // Retained and Spliced Intron # retained_intron 10484487-10484569 (orient:+) max_ev_support = 1 # spliced_intron 10484487-10484569 (orient:+) max_ev_support = 2 scaffold_8 + intron 10484487-10484569 asmbl_53172 scaffold_8 + retained_intron 10484487-10484569 asmbl_53174 // Retained and Spliced Intron # retained_intron 10793464-10793556 (orient:+) max_ev_support = 2 # spliced_intron 10793464-10793556 (orient:+) max_ev_support = 2 scaffold_8 + intron 10793464-10793556 asmbl_53181 scaffold_8 + retained_intron 10793464-10793556 asmbl_53183 // Retained and Spliced Intron # retained_intron 10793464-10793568 (orient:+) max_ev_support = 2 # spliced_intron 10793464-10793568 (orient:+) max_ev_support = 2 scaffold_8 + intron 10793464-10793568 asmbl_53182 scaffold_8 + retained_intron 10793464-10793568 asmbl_53183 // Retained and Spliced Intron # retained_intron 11111045-11111142 (orient:+) max_ev_support = 2 # spliced_intron 11111045-11111142 (orient:+) max_ev_support = 2 scaffold_8 + intron 11111045-11111142 asmbl_53197 scaffold_8 + retained_intron 11111045-11111142 asmbl_53195 // Exon Skipping and Retention # skipped_exon 11110746-11111142 (orient:+) max_ev_support = 2 # retained_exon 11110926-11111044 (orient:+) max_ev_support = 2 scaffold_8 + retained_exons 11110926-11111044 asmbl_53197 scaffold_8 + intron_skips_exon 11110746-11111142 asmbl_53196 // Retained and Spliced Intron # retained_intron 11243691-11244097 (orient:+) max_ev_support = 4 # spliced_intron 11243691-11244097 (orient:+) max_ev_support = 2 scaffold_8 + intron 11243691-11244097 asmbl_53204 scaffold_8 + retained_intron 11243691-11244097 asmbl_53203 // Retained and Spliced Intron # retained_intron 11275623-11276066 (orient:+) max_ev_support = 2 # spliced_intron 11275623-11276066 (orient:+) max_ev_support = 3 scaffold_8 + intron 11275623-11276066 asmbl_53209,asmbl_53210,asmbl_53211,asmbl_53213 scaffold_8 + retained_intron 11275623-11276066 asmbl_53212 // Retained and Spliced Intron # retained_intron 11272951-11273303 (orient:+) max_ev_support = 1 # spliced_intron 11272951-11273303 (orient:+) max_ev_support = 3 scaffold_8 + intron 11272951-11273303 asmbl_53210 scaffold_8 + retained_intron 11272951-11273303 asmbl_53213 // Exon Skipping and Retention # skipped_exon 11297094-11298833 (orient:+) max_ev_support = 2 # retained_exon 11298141-11298291 (orient:+) max_ev_support = 3 scaffold_8 + retained_exons 11298141-11298291 asmbl_53214,asmbl_53215 scaffold_8 + intron_skips_exon 11297094-11298833 asmbl_53218 // Exon Skipping and Retention # skipped_exon 11297094-11298140 (orient:+) max_ev_support = 3 # retained_exon 11297315-11297361 (orient:+) max_ev_support = 2 scaffold_8 + retained_exons 11297315-11297361 asmbl_53216,asmbl_53217 scaffold_8 + intron_skips_exon 11297094-11298140 asmbl_53214,asmbl_53215 // Exon Skipping and Retention # skipped_exon 11463679-11465108 (orient:+) max_ev_support = 2 # retained_exon 11463927-11464005 (orient:+) max_ev_support = 2 scaffold_8 + retained_exons 11463927-11464005 asmbl_53226 scaffold_8 + intron_skips_exon 11463679-11465108 asmbl_53227 // Exon Skipping and Retention # skipped_exon 11560060-11561679 (orient:+) max_ev_support = 1 # retained_exon 11560366-11560578 (orient:+) max_ev_support = 4 scaffold_8 + retained_exons 11560366-11560578 asmbl_53232 scaffold_8 + intron_skips_exon 11560060-11561679 asmbl_53233 // Exon Skipping and Retention # skipped_exon 11572603-11573251 (orient:+) max_ev_support = 3 # retained_exon 11572891-11572942 (orient:+) max_ev_support = 2 scaffold_8 + retained_exons 11572891-11572942 asmbl_53238 scaffold_8 + intron_skips_exon 11572603-11573251 asmbl_53237 // Exon Skipping and Retention # skipped_exon 11581693-11582127 (orient:+) max_ev_support = 2 # retained_exon 11581936-11581992 (orient:+) max_ev_support = 2 scaffold_8 + retained_exons 11581936-11581992 asmbl_53240 scaffold_8 + intron_skips_exon 11581693-11582127 asmbl_53239 // Retained and Spliced Intron # retained_intron 11744324-11744678 (orient:+) max_ev_support = 2 # spliced_intron 11744324-11744678 (orient:+) max_ev_support = 2 scaffold_8 + intron 11744324-11744678 asmbl_53259 scaffold_8 + retained_intron 11744324-11744678 asmbl_53258 // Retained and Spliced Intron # retained_intron 11810388-11810529 (orient:+) max_ev_support = 1 # spliced_intron 11810388-11810529 (orient:+) max_ev_support = 2 scaffold_8 + intron 11810388-11810529 asmbl_53266,asmbl_53268 scaffold_8 + retained_intron 11810388-11810529 asmbl_53269 // Retained and Spliced Intron # retained_intron 11810649-11810780 (orient:+) max_ev_support = 1 # spliced_intron 11810649-11810780 (orient:+) max_ev_support = 2 scaffold_8 + intron 11810649-11810780 asmbl_53266,asmbl_53268 scaffold_8 + retained_intron 11810649-11810780 asmbl_53269 // Exon Skipping and Retention # skipped_exon 11829975-11830992 (orient:+) max_ev_support = 1 # retained_exon 11830678-11830719 (orient:+) max_ev_support = 1 scaffold_8 + retained_exons 11830678-11830719 asmbl_53272,asmbl_53274 scaffold_8 + intron_skips_exon 11829975-11830992 asmbl_53273 // Retained and Spliced Intron # retained_intron 11846516-11848424 (orient:+) max_ev_support = 2 # spliced_intron 11846516-11848424 (orient:+) max_ev_support = 1 scaffold_8 + intron 11846516-11848424 asmbl_53283,asmbl_53284 scaffold_8 + retained_intron 11846516-11848424 asmbl_53277,asmbl_53278,asmbl_53279,asmbl_53280,asmbl_53281,asmbl_53282,asmbl_53288 // Retained and Spliced Intron # retained_intron 11848560-11849714 (orient:+) max_ev_support = 3 # spliced_intron 11848560-11849714 (orient:+) max_ev_support = 2 scaffold_8 + intron 11848560-11849714 asmbl_53278,asmbl_53282,asmbl_53284 scaffold_8 + retained_intron 11848560-11849714 asmbl_53277,asmbl_53279,asmbl_53288 // Retained and Spliced Intron # retained_intron 11848560-11850658 (orient:+) max_ev_support = 3 # spliced_intron 11848560-11850658 (orient:+) max_ev_support = 2 scaffold_8 + intron 11848560-11850658 asmbl_53280,asmbl_53281,asmbl_53283 scaffold_8 + retained_intron 11848560-11850658 asmbl_53277 // Retained and Spliced Intron # retained_intron 11849733-11850089 (orient:+) max_ev_support = 3 # spliced_intron 11849733-11850089 (orient:+) max_ev_support = 1 scaffold_8 + intron 11849733-11850089 asmbl_53282 scaffold_8 + retained_intron 11849733-11850089 asmbl_53277,asmbl_53279 // Retained and Spliced Intron # retained_intron 11849733-11850658 (orient:+) max_ev_support = 3 # spliced_intron 11849733-11850658 (orient:+) max_ev_support = 3 scaffold_8 + intron 11849733-11850658 asmbl_53278,asmbl_53284,asmbl_53288 scaffold_8 + retained_intron 11849733-11850658 asmbl_53277 // Retained and Spliced Intron # retained_intron 11850111-11850658 (orient:+) max_ev_support = 1 # spliced_intron 11850111-11850658 (orient:+) max_ev_support = 2 scaffold_8 + intron 11850111-11850658 asmbl_53279,asmbl_53282 scaffold_8 + retained_intron 11850111-11850658 asmbl_53277,asmbl_53292,asmbl_53293 // Retained and Spliced Intron # retained_intron 11850678-11850826 (orient:+) max_ev_support = 1 # spliced_intron 11850678-11850826 (orient:+) max_ev_support = 3 scaffold_8 + intron 11850678-11850826 asmbl_53278,asmbl_53279,asmbl_53280,asmbl_53281,asmbl_53282,asmbl_53283,asmbl_53284,asmbl_53288 scaffold_8 + retained_intron 11850678-11850826 asmbl_53277,asmbl_53292,asmbl_53293 // Retained and Spliced Intron # retained_intron 11850873-11851005 (orient:+) max_ev_support = 1 # spliced_intron 11850873-11851005 (orient:+) max_ev_support = 3 scaffold_8 + intron 11850873-11851005 asmbl_53278,asmbl_53279,asmbl_53280,asmbl_53281,asmbl_53282,asmbl_53283,asmbl_53284,asmbl_53288,asmbl_53290,asmbl_53291 scaffold_8 + retained_intron 11850873-11851005 asmbl_53277,asmbl_53292,asmbl_53293 // Exon Skipping and Retention # skipped_exon 11848560-11850658 (orient:+) max_ev_support = 1 # retained_exon 11849715-11849732 (orient:+) max_ev_support = 2 scaffold_8 + retained_exons 11849715-11849732 asmbl_53278,asmbl_53284 scaffold_8 + intron_skips_exon 11848560-11850658 asmbl_53280,asmbl_53281,asmbl_53283 // Exon Skipping and Retention # skipped_exon 11852641-11854227 (orient:+) max_ev_support = 1 # retained_exon 11853029-11853069 (orient:+) max_ev_support = 2 scaffold_8 + retained_exons 11853029-11853069 asmbl_53278,asmbl_53280,asmbl_53281,asmbl_53282,asmbl_53283,asmbl_53284,asmbl_53290,asmbl_53293 scaffold_8 + intron_skips_exon 11852641-11854227 asmbl_53279,asmbl_53288 // Exon Skipping and Retention # skipped_exon 11853070-11855193 (orient:+) max_ev_support = 2 # retained_exon 11854228-11854268 (orient:+) max_ev_support = 1 scaffold_8 + retained_exons 11854228-11854268 asmbl_53279,asmbl_53288 scaffold_8 + intron_skips_exon 11853070-11855193 asmbl_53278,asmbl_53280,asmbl_53281,asmbl_53282,asmbl_53283,asmbl_53284,asmbl_53290,asmbl_53293 // Exon Skipping and Retention # skipped_exon 11849733-11850658 (orient:+) max_ev_support = 2 # retained_exon 11850090-11850110 (orient:+) max_ev_support = 1 scaffold_8 + retained_exons 11850090-11850110 asmbl_53282 scaffold_8 + intron_skips_exon 11849733-11850658 asmbl_53278,asmbl_53284,asmbl_53288 // Retained and Spliced Intron # retained_intron 11853070-11855193 (orient:+) max_ev_support = 2 # spliced_intron 11853070-11855193 (orient:+) max_ev_support = 2 scaffold_8 + intron 11853070-11855193 asmbl_53278,asmbl_53280,asmbl_53281,asmbl_53282,asmbl_53283,asmbl_53284,asmbl_53290,asmbl_53293 scaffold_8 + retained_intron 11853070-11855193 asmbl_53285 // Retained and Spliced Intron # retained_intron 11854269-11855193 (orient:+) max_ev_support = 2 # spliced_intron 11854269-11855193 (orient:+) max_ev_support = 1 scaffold_8 + intron 11854269-11855193 asmbl_53277,asmbl_53279,asmbl_53287,asmbl_53288 scaffold_8 + retained_intron 11854269-11855193 asmbl_53285 // Retained and Spliced Intron # retained_intron 11852296-11852549 (orient:+) max_ev_support = 2 # spliced_intron 11852296-11852549 (orient:+) max_ev_support = 2 scaffold_8 + intron 11852296-11852549 asmbl_53277,asmbl_53278,asmbl_53279,asmbl_53280,asmbl_53281,asmbl_53282,asmbl_53283,asmbl_53284,asmbl_53288,asmbl_53289,asmbl_53290,asmbl_53291,asmbl_53292,asmbl_53293 scaffold_8 + retained_intron 11852296-11852549 asmbl_53286 // Retained and Spliced Intron # retained_intron 11851123-11851344 (orient:+) max_ev_support = 1 # spliced_intron 11851123-11851344 (orient:+) max_ev_support = 3 scaffold_8 + intron 11851123-11851344 asmbl_53277,asmbl_53278,asmbl_53279,asmbl_53280,asmbl_53281,asmbl_53282,asmbl_53283,asmbl_53284,asmbl_53288,asmbl_53292,asmbl_53293 scaffold_8 + retained_intron 11851123-11851344 asmbl_53290,asmbl_53291 // Retained and Spliced Intron # retained_intron 11952271-11952696 (orient:+) max_ev_support = 1 # spliced_intron 11952271-11952696 (orient:+) max_ev_support = 1 scaffold_8 + intron 11952271-11952696 asmbl_53298 scaffold_8 + retained_intron 11952271-11952696 asmbl_53296,asmbl_53297 // Retained and Spliced Intron # retained_intron 12027883-12028191 (orient:+) max_ev_support = 2 # spliced_intron 12027883-12028191 (orient:+) max_ev_support = 3 scaffold_8 + intron 12027883-12028191 asmbl_53302 scaffold_8 + retained_intron 12027883-12028191 asmbl_53303 // Retained and Spliced Intron # retained_intron 12560537-12560677 (orient:+) max_ev_support = 1 # spliced_intron 12560537-12560677 (orient:+) max_ev_support = 3 scaffold_8 + intron 12560537-12560677 asmbl_53318 scaffold_8 + retained_intron 12560537-12560677 asmbl_53319 // Exon Skipping and Retention # skipped_exon 12690007-12691737 (orient:+) max_ev_support = 1 # retained_exon 12690957-12690998 (orient:+) max_ev_support = 1 scaffold_8 + retained_exons 12690957-12690998 asmbl_53325,asmbl_53329 scaffold_8 + intron_skips_exon 12690007-12691737 asmbl_53326,asmbl_53327,asmbl_53328 // Retained and Spliced Intron # retained_intron 12692846-12692968 (orient:+) max_ev_support = 1 # spliced_intron 12692846-12692968 (orient:+) max_ev_support = 1 scaffold_8 + intron 12692846-12692968 asmbl_53325,asmbl_53326,asmbl_53328,asmbl_53329,asmbl_53330 scaffold_8 + retained_intron 12692846-12692968 asmbl_53327 // Exon Skipping and Retention # skipped_exon 12693269-12693431 (orient:+) max_ev_support = 1 # retained_exon 12693353-12693373 (orient:+) max_ev_support = 1 scaffold_8 + retained_exons 12693353-12693373 asmbl_53327,asmbl_53328,asmbl_53329 scaffold_8 + intron_skips_exon 12693269-12693431 asmbl_53325,asmbl_53326,asmbl_53330,asmbl_53331 // Retained and Spliced Intron # retained_intron 12693755-12693924 (orient:+) max_ev_support = 1 # spliced_intron 12693755-12693924 (orient:+) max_ev_support = 1 scaffold_8 + intron 12693755-12693924 asmbl_53325,asmbl_53326,asmbl_53327,asmbl_53328,asmbl_53329,asmbl_53330,asmbl_53332 scaffold_8 + retained_intron 12693755-12693924 asmbl_53331 // Retained and Spliced Intron # retained_intron 12693248-12693352 (orient:+) max_ev_support = 1 # spliced_intron 12693248-12693352 (orient:+) max_ev_support = 1 scaffold_8 + intron 12693248-12693352 asmbl_53327,asmbl_53328,asmbl_53329 scaffold_8 + retained_intron 12693248-12693352 asmbl_53332 // Retained and Spliced Intron # retained_intron 12693269-12693431 (orient:+) max_ev_support = 1 # spliced_intron 12693269-12693431 (orient:+) max_ev_support = 1 scaffold_8 + intron 12693269-12693431 asmbl_53325,asmbl_53326,asmbl_53330,asmbl_53331 scaffold_8 + retained_intron 12693269-12693431 asmbl_53332 // Retained and Spliced Intron # retained_intron 12693374-12693431 (orient:+) max_ev_support = 1 # spliced_intron 12693374-12693431 (orient:+) max_ev_support = 1 scaffold_8 + intron 12693374-12693431 asmbl_53327,asmbl_53328,asmbl_53329 scaffold_8 + retained_intron 12693374-12693431 asmbl_53332 // Exon Skipping and Retention # skipped_exon 13256225-13256725 (orient:+) max_ev_support = 2 # retained_exon 13256459-13256547 (orient:+) max_ev_support = 2 scaffold_8 + retained_exons 13256459-13256547 asmbl_53351 scaffold_8 + intron_skips_exon 13256225-13256725 asmbl_53350 // Retained and Spliced Intron # retained_intron 14130033-14130103 (orient:+) max_ev_support = 1 # spliced_intron 14130033-14130103 (orient:+) max_ev_support = 2 scaffold_8 + intron 14130033-14130103 asmbl_53359 scaffold_8 + retained_intron 14130033-14130103 asmbl_53360 // Retained and Spliced Intron # retained_intron 14432596-14432761 (orient:+) max_ev_support = 1 # spliced_intron 14432596-14432761 (orient:+) max_ev_support = 2 scaffold_8 + intron 14432596-14432761 asmbl_53369 scaffold_8 + retained_intron 14432596-14432761 asmbl_53372 // Retained and Spliced Intron # retained_intron 14569488-14569706 (orient:+) max_ev_support = 1 # spliced_intron 14569488-14569706 (orient:+) max_ev_support = 2 scaffold_8 + intron 14569488-14569706 asmbl_53380,asmbl_53383 scaffold_8 + retained_intron 14569488-14569706 asmbl_53378 // Exon Skipping and Retention # skipped_exon 14569488-14571071 (orient:+) max_ev_support = 1 # retained_exon 14569707-14569797 (orient:+) max_ev_support = 2 scaffold_8 + retained_exons 14569707-14569797 asmbl_53380,asmbl_53383 scaffold_8 + intron_skips_exon 14569488-14571071 asmbl_53382 // Exon Skipping and Retention # skipped_exon 14569798-14572335 (orient:+) max_ev_support = 2 # retained_exon 14571072-14571162 (orient:+) max_ev_support = 1 scaffold_8 + retained_exons 14571072-14571162 asmbl_53382,asmbl_53383 scaffold_8 + intron_skips_exon 14569798-14572335 asmbl_53380 // Exon Skipping and Retention # skipped_exon 15335576-15336244 (orient:+) max_ev_support = 2 # retained_exon 15335814-15336002 (orient:+) max_ev_support = 2 scaffold_8 + retained_exons 15335814-15336002 asmbl_53400 scaffold_8 + intron_skips_exon 15335576-15336244 asmbl_53399 // Retained and Spliced Intron # retained_intron 15345104-15345457 (orient:+) max_ev_support = 3 # spliced_intron 15345104-15345457 (orient:+) max_ev_support = 3 scaffold_8 + intron 15345104-15345457 asmbl_53403 scaffold_8 + retained_intron 15345104-15345457 asmbl_53402 // Retained and Spliced Intron # retained_intron 15733421-15733539 (orient:+) max_ev_support = 2 # spliced_intron 15733421-15733539 (orient:+) max_ev_support = 2 scaffold_8 + intron 15733421-15733539 asmbl_53415,asmbl_53417 scaffold_8 + retained_intron 15733421-15733539 asmbl_53416 // Retained and Spliced Intron # retained_intron 15734313-15734436 (orient:+) max_ev_support = 1 # spliced_intron 15734313-15734436 (orient:+) max_ev_support = 2 scaffold_8 + intron 15734313-15734436 asmbl_53415,asmbl_53416 scaffold_8 + retained_intron 15734313-15734436 asmbl_53417 // Retained and Spliced Intron # retained_intron 16230070-16230333 (orient:+) max_ev_support = 4 # spliced_intron 16230070-16230333 (orient:+) max_ev_support = 3 scaffold_8 + intron 16230070-16230333 asmbl_53437,asmbl_53439 scaffold_8 + retained_intron 16230070-16230333 asmbl_53435,asmbl_53436 // Retained and Spliced Intron # retained_intron 16279130-16279219 (orient:+) max_ev_support = 2 # spliced_intron 16279130-16279219 (orient:+) max_ev_support = 2 scaffold_8 + intron 16279130-16279219 asmbl_53444 scaffold_8 + retained_intron 16279130-16279219 asmbl_53445 // Retained and Spliced Intron # retained_intron 16384026-16384136 (orient:+) max_ev_support = 1 # spliced_intron 16384026-16384136 (orient:+) max_ev_support = 3 scaffold_8 + intron 16384026-16384136 asmbl_53446 scaffold_8 + retained_intron 16384026-16384136 asmbl_53447 // Exon Skipping and Retention # skipped_exon 16385407-16386865 (orient:+) max_ev_support = 1 # retained_exon 16385816-16385960 (orient:+) max_ev_support = 3 scaffold_8 + retained_exons 16385816-16385960 asmbl_53448,asmbl_53449,asmbl_53450 scaffold_8 + intron_skips_exon 16385407-16386865 asmbl_53455 // Exon Skipping and Retention # skipped_exon 16656073-16657032 (orient:+) max_ev_support = 2 # retained_exon 16656666-16656851 (orient:+) max_ev_support = 2 scaffold_8 + retained_exons 16656666-16656851 asmbl_53464 scaffold_8 + intron_skips_exon 16656073-16657032 asmbl_53465 // Exon Skipping and Retention # skipped_exon 17454124-17455338 (orient:+) max_ev_support = 3 # retained_exon 17454425-17454460 (orient:+) max_ev_support = 3 scaffold_8 + retained_exons 17454425-17454460 asmbl_53477 scaffold_8 + intron_skips_exon 17454124-17455338 asmbl_53478 // Retained and Spliced Intron # retained_intron 17454124-17454424 (orient:+) max_ev_support = 1 # spliced_intron 17454124-17454424 (orient:+) max_ev_support = 3 scaffold_8 + intron 17454124-17454424 asmbl_53477 scaffold_8 + retained_intron 17454124-17454424 asmbl_53480 // Retained and Spliced Intron # retained_intron 17494980-17495324 (orient:+) max_ev_support = 5 # spliced_intron 17494980-17495324 (orient:+) max_ev_support = 1 scaffold_8 + intron 17494980-17495324 asmbl_53489 scaffold_8 + retained_intron 17494980-17495324 asmbl_53481 // Retained and Spliced Intron # retained_intron 17498151-17498237 (orient:+) max_ev_support = 1 # spliced_intron 17498151-17498237 (orient:+) max_ev_support = 2 scaffold_8 + intron 17498151-17498237 asmbl_53482,asmbl_53483,asmbl_53484,asmbl_53488 scaffold_8 + retained_intron 17498151-17498237 asmbl_53487,asmbl_53490 // Exon Skipping and Retention # skipped_exon 17810310-17813119 (orient:+) max_ev_support = 3 # retained_exon 17811862-17811900 (orient:+) max_ev_support = 3 scaffold_8 + retained_exons 17811862-17811900 asmbl_53506,asmbl_53509 scaffold_8 + intron_skips_exon 17810310-17813119 asmbl_53505,asmbl_53510 // Retained and Spliced Intron # retained_intron 17815077-17815245 (orient:+) max_ev_support = 1 # spliced_intron 17815077-17815245 (orient:+) max_ev_support = 3 scaffold_8 + intron 17815077-17815245 asmbl_53505,asmbl_53506,asmbl_53513 scaffold_8 + retained_intron 17815077-17815245 asmbl_53509,asmbl_53512 // Retained and Spliced Intron # retained_intron 17815077-17815250 (orient:+) max_ev_support = 1 # spliced_intron 17815077-17815250 (orient:+) max_ev_support = 1 scaffold_8 + intron 17815077-17815250 asmbl_53510,asmbl_53511 scaffold_8 + retained_intron 17815077-17815250 asmbl_53509,asmbl_53512 // Retained and Spliced Intron # retained_intron 17839229-17839334 (orient:+) max_ev_support = 2 # spliced_intron 17839229-17839334 (orient:+) max_ev_support = 3 scaffold_8 + intron 17839229-17839334 asmbl_53514 scaffold_8 + retained_intron 17839229-17839334 asmbl_53515 // Retained and Spliced Intron # retained_intron 18089675-18090313 (orient:+) max_ev_support = 2 # spliced_intron 18089675-18090313 (orient:+) max_ev_support = 2 scaffold_8 + intron 18089675-18090313 asmbl_53524 scaffold_8 + retained_intron 18089675-18090313 asmbl_53525 // Retained and Spliced Intron # retained_intron 18089772-18090313 (orient:+) max_ev_support = 2 # spliced_intron 18089772-18090313 (orient:+) max_ev_support = 1 scaffold_8 + intron 18089772-18090313 asmbl_53526 scaffold_8 + retained_intron 18089772-18090313 asmbl_53525 // Retained and Spliced Intron # retained_intron 18108227-18108429 (orient:+) max_ev_support = 3 # spliced_intron 18108227-18108429 (orient:+) max_ev_support = 3 scaffold_8 + intron 18108227-18108429 asmbl_53532 scaffold_8 + retained_intron 18108227-18108429 asmbl_53531 // Retained and Spliced Intron # retained_intron 18108298-18108429 (orient:+) max_ev_support = 3 # spliced_intron 18108298-18108429 (orient:+) max_ev_support = 1 scaffold_8 + intron 18108298-18108429 asmbl_53533 scaffold_8 + retained_intron 18108298-18108429 asmbl_53531 // Retained and Spliced Intron # retained_intron 18421281-18421426 (orient:+) max_ev_support = 1 # spliced_intron 18421281-18421426 (orient:+) max_ev_support = 2 scaffold_8 + intron 18421281-18421426 asmbl_53544,asmbl_53545 scaffold_8 + retained_intron 18421281-18421426 asmbl_53546 // Retained and Spliced Intron # retained_intron 18534391-18534486 (orient:+) max_ev_support = 1 # spliced_intron 18534391-18534486 (orient:+) max_ev_support = 1 scaffold_8 + intron 18534391-18534486 asmbl_53562 scaffold_8 + retained_intron 18534391-18534486 asmbl_53561 // Retained and Spliced Intron # retained_intron 18541820-18542760 (orient:+) max_ev_support = 2 # spliced_intron 18541820-18542760 (orient:+) max_ev_support = 4 scaffold_8 + intron 18541820-18542760 asmbl_53563,asmbl_53566 scaffold_8 + retained_intron 18541820-18542760 asmbl_53564 // Retained and Spliced Intron # retained_intron 2605-2957 (orient:+) max_ev_support = 2 # spliced_intron 2605-2957 (orient:+) max_ev_support = 1 scaffold_810 + intron 2605-2957 asmbl_53679 scaffold_810 + retained_intron 2605-2957 asmbl_53678 // Retained and Spliced Intron # retained_intron 119321-119545 (orient:+) max_ev_support = 3 # spliced_intron 119321-119545 (orient:+) max_ev_support = 2 scaffold_9 + intron 119321-119545 asmbl_53753 scaffold_9 + retained_intron 119321-119545 asmbl_53752 // Exon Skipping and Retention # skipped_exon 361448-362689 (orient:+) max_ev_support = 2 # retained_exon 361629-362292 (orient:+) max_ev_support = 2 scaffold_9 + retained_exons 361629-361760,362138-362292 asmbl_53756 scaffold_9 + intron_skips_exon 361448-362689 asmbl_53755 // Retained and Spliced Intron # retained_intron 571057-571248 (orient:+) max_ev_support = 1 # spliced_intron 571057-571248 (orient:+) max_ev_support = 1 scaffold_9 + intron 571057-571248 asmbl_53772 scaffold_9 + retained_intron 571057-571248 asmbl_53770 // Retained and Spliced Intron # retained_intron 571217-571264 (orient:+) max_ev_support = 1 # spliced_intron 571217-571264 (orient:+) max_ev_support = 1 scaffold_9 + intron 571217-571264 asmbl_53771 scaffold_9 + retained_intron 571217-571264 asmbl_53770 // Retained and Spliced Intron # retained_intron 634983-635016 (orient:+) max_ev_support = 5 # spliced_intron 634983-635016 (orient:+) max_ev_support = 1 scaffold_9 + intron 634983-635016 asmbl_53777 scaffold_9 + retained_intron 634983-635016 asmbl_53776 // Retained and Spliced Intron # retained_intron 637042-637113 (orient:+) max_ev_support = 1 # spliced_intron 637042-637113 (orient:+) max_ev_support = 1 scaffold_9 + intron 637042-637113 asmbl_53778 scaffold_9 + retained_intron 637042-637113 asmbl_53779 // Exon Skipping and Retention # skipped_exon 644164-645342 (orient:+) max_ev_support = 1 # retained_exon 645134-645220 (orient:+) max_ev_support = 2 scaffold_9 + retained_exons 645134-645220 asmbl_53781 scaffold_9 + intron_skips_exon 644164-645342 asmbl_53783 // Exon Skipping and Retention # skipped_exon 644461-645690 (orient:+) max_ev_support = 1 # retained_exon 645134-645512 (orient:+) max_ev_support = 2 scaffold_9 + retained_exons 645134-645220,645343-645512 asmbl_53781 scaffold_9 + intron_skips_exon 644461-645690 asmbl_53784 // Exon Skipping and Retention # skipped_exon 644688-645850 (orient:+) max_ev_support = 1 # retained_exon 645134-645735 (orient:+) max_ev_support = 2 scaffold_9 + retained_exons 645134-645220,645343-645512,645691-645735 asmbl_53781 scaffold_9 + intron_skips_exon 644688-645850 asmbl_53782 // Exon Skipping and Retention # skipped_exon 643673-645133 (orient:+) max_ev_support = 2 # retained_exon 644077-644687 (orient:+) max_ev_support = 1 scaffold_9 + retained_exons 644077-644163,644291-644460,644643-644687 asmbl_53782 scaffold_9 + intron_skips_exon 643673-645133 asmbl_53781 // Exon Skipping and Retention # skipped_exon 2795829-2798112 (orient:+) max_ev_support = 3 # retained_exon 2796321-2796360 (orient:+) max_ev_support = 3 scaffold_9 + retained_exons 2796321-2796360 asmbl_53859,asmbl_53867 scaffold_9 + intron_skips_exon 2795829-2798112 asmbl_53860,asmbl_53863 // Exon Skipping and Retention # skipped_exon 3149490-3150174 (orient:+) max_ev_support = 3 # retained_exon 3149642-3149822 (orient:+) max_ev_support = 2 scaffold_9 + retained_exons 3149642-3149822 asmbl_53879 scaffold_9 + intron_skips_exon 3149490-3150174 asmbl_53878 // Exon Skipping and Retention # skipped_exon 3197498-3199171 (orient:+) max_ev_support = 2 # retained_exon 3198855-3198923 (orient:+) max_ev_support = 3 scaffold_9 + retained_exons 3198855-3198923 asmbl_53881 scaffold_9 + intron_skips_exon 3197498-3199171 asmbl_53882 // Exon Skipping and Retention # skipped_exon 3374363-3374990 (orient:+) max_ev_support = 2 # retained_exon 3374637-3374715 (orient:+) max_ev_support = 1 scaffold_9 + retained_exons 3374637-3374715 asmbl_53893 scaffold_9 + intron_skips_exon 3374363-3374990 asmbl_53892 // Retained and Spliced Intron # retained_intron 3375064-3375256 (orient:+) max_ev_support = 1 # spliced_intron 3375064-3375256 (orient:+) max_ev_support = 2 scaffold_9 + intron 3375064-3375256 asmbl_53892,asmbl_53893 scaffold_9 + retained_intron 3375064-3375256 asmbl_53894 // Exon Skipping and Retention # skipped_exon 3387052-3388058 (orient:+) max_ev_support = 3 # retained_exon 3387786-3387899 (orient:+) max_ev_support = 1 scaffold_9 + retained_exons 3387786-3387899 asmbl_53901 scaffold_9 + intron_skips_exon 3387052-3388058 asmbl_53900 // Exon Skipping and Retention # skipped_exon 3663798-3666612 (orient:+) max_ev_support = 3 # retained_exon 3665717-3665928 (orient:+) max_ev_support = 1 scaffold_9 + retained_exons 3665717-3665928 asmbl_53908 scaffold_9 + intron_skips_exon 3663798-3666612 asmbl_53907 // Exon Skipping and Retention # skipped_exon 4203935-4206879 (orient:+) max_ev_support = 1 # retained_exon 4206166-4206311 (orient:+) max_ev_support = 1 scaffold_9 + retained_exons 4206166-4206311 asmbl_53941 scaffold_9 + intron_skips_exon 4203935-4206879 asmbl_53942 // Exon Skipping and Retention # skipped_exon 4898798-4899430 (orient:+) max_ev_support = 1 # retained_exon 4899092-4899133 (orient:+) max_ev_support = 1 scaffold_9 + retained_exons 4899092-4899133 asmbl_53967 scaffold_9 + intron_skips_exon 4898798-4899430 asmbl_53968 // Exon Skipping and Retention # skipped_exon 4898501-4899242 (orient:+) max_ev_support = 1 # retained_exon 4899092-4899133 (orient:+) max_ev_support = 1 scaffold_9 + retained_exons 4899092-4899133 asmbl_53967 scaffold_9 + intron_skips_exon 4898501-4899242 asmbl_53969 // Exon Skipping and Retention # skipped_exon 4898175-4899091 (orient:+) max_ev_support = 1 # retained_exon 4898459-4898797 (orient:+) max_ev_support = 1 scaffold_9 + retained_exons 4898459-4898500,4898610-4898797 asmbl_53968 scaffold_9 + intron_skips_exon 4898175-4899091 asmbl_53967 // Exon Skipping and Retention # skipped_exon 5082362-5084569 (orient:+) max_ev_support = 1 # retained_exon 5083119-5083286 (orient:+) max_ev_support = 1 scaffold_9 + retained_exons 5083119-5083286 asmbl_53989,asmbl_53991,asmbl_53992 scaffold_9 + intron_skips_exon 5082362-5084569 asmbl_53990 // Exon Skipping and Retention # skipped_exon 5173038-5174369 (orient:+) max_ev_support = 1 # retained_exon 5173347-5174133 (orient:+) max_ev_support = 1 scaffold_9 + retained_exons 5173347-5173468,5173760-5173900,5174044-5174133 asmbl_54000 scaffold_9 + intron_skips_exon 5173038-5174369 asmbl_53999 // Retained and Spliced Intron # retained_intron 5220781-5220889 (orient:+) max_ev_support = 2 # spliced_intron 5220781-5220889 (orient:+) max_ev_support = 2 scaffold_9 + intron 5220781-5220889 asmbl_54003,asmbl_54004,asmbl_54006 scaffold_9 + retained_intron 5220781-5220889 asmbl_54005 // Retained and Spliced Intron # retained_intron 5283686-5284698 (orient:+) max_ev_support = 4 # spliced_intron 5283686-5284698 (orient:+) max_ev_support = 1 scaffold_9 + intron 5283686-5284698 asmbl_54025 scaffold_9 + retained_intron 5283686-5284698 asmbl_54022,asmbl_54023 // Exon Skipping and Retention # skipped_exon 5286019-5288508 (orient:+) max_ev_support = 3 # retained_exon 5286360-5286377 (orient:+) max_ev_support = 2 scaffold_9 + retained_exons 5286360-5286377 asmbl_54023,asmbl_54025 scaffold_9 + intron_skips_exon 5286019-5288508 asmbl_54022 // Exon Skipping and Retention # skipped_exon 5296039-5296615 (orient:+) max_ev_support = 3 # retained_exon 5296371-5296474 (orient:+) max_ev_support = 1 scaffold_9 + retained_exons 5296371-5296474 asmbl_54030 scaffold_9 + intron_skips_exon 5296039-5296615 asmbl_54022,asmbl_54023,asmbl_54025 // Retained and Spliced Intron # retained_intron 5468453-5468592 (orient:+) max_ev_support = 2 # spliced_intron 5468453-5468592 (orient:+) max_ev_support = 3 scaffold_9 + intron 5468453-5468592 asmbl_54044 scaffold_9 + retained_intron 5468453-5468592 asmbl_54045 // Retained and Spliced Intron # retained_intron 5473472-5473745 (orient:+) max_ev_support = 1 # spliced_intron 5473472-5473745 (orient:+) max_ev_support = 3 scaffold_9 + intron 5473472-5473745 asmbl_54046 scaffold_9 + retained_intron 5473472-5473745 asmbl_54047 // Exon Skipping and Retention # skipped_exon 5655421-5656306 (orient:+) max_ev_support = 2 # retained_exon 5655560-5655667 (orient:+) max_ev_support = 1 scaffold_9 + retained_exons 5655560-5655667 asmbl_54058 scaffold_9 + intron_skips_exon 5655421-5656306 asmbl_54056 // Exon Skipping and Retention # skipped_exon 6148887-6150219 (orient:+) max_ev_support = 1 # retained_exon 6149058-6149127 (orient:+) max_ev_support = 1 scaffold_9 + retained_exons 6149058-6149127 asmbl_54077 scaffold_9 + intron_skips_exon 6148887-6150219 asmbl_54078 // Retained and Spliced Intron # retained_intron 6284420-6284513 (orient:+) max_ev_support = 1 # spliced_intron 6284420-6284513 (orient:+) max_ev_support = 2 scaffold_9 + intron 6284420-6284513 asmbl_54084 scaffold_9 + retained_intron 6284420-6284513 asmbl_54085 // Retained and Spliced Intron # retained_intron 6290195-6290500 (orient:+) max_ev_support = 2 # spliced_intron 6290195-6290500 (orient:+) max_ev_support = 2 scaffold_9 + intron 6290195-6290500 asmbl_54087 scaffold_9 + retained_intron 6290195-6290500 asmbl_54086 // Retained and Spliced Intron # retained_intron 6400017-6400100 (orient:+) max_ev_support = 3 # spliced_intron 6400017-6400100 (orient:+) max_ev_support = 2 scaffold_9 + intron 6400017-6400100 asmbl_54092,asmbl_54093 scaffold_9 + retained_intron 6400017-6400100 asmbl_54091,asmbl_54094 // Exon Skipping and Retention # skipped_exon 6992294-6992756 (orient:+) max_ev_support = 2 # retained_exon 6992555-6992588 (orient:+) max_ev_support = 2 scaffold_9 + retained_exons 6992555-6992588 asmbl_54119 scaffold_9 + intron_skips_exon 6992294-6992756 asmbl_54120 // Retained and Spliced Intron # retained_intron 7025897-7025977 (orient:+) max_ev_support = 2 # spliced_intron 7025897-7025977 (orient:+) max_ev_support = 2 scaffold_9 + intron 7025897-7025977 asmbl_54122 scaffold_9 + retained_intron 7025897-7025977 asmbl_54123 // Exon Skipping and Retention # skipped_exon 7748473-7750937 (orient:+) max_ev_support = 1 # retained_exon 7750057-7750345 (orient:+) max_ev_support = 5 scaffold_9 + retained_exons 7750057-7750193,7750282-7750345 asmbl_54131 scaffold_9 + intron_skips_exon 7748473-7750937 asmbl_54132 // Exon Skipping and Retention # skipped_exon 7793887-7795348 (orient:+) max_ev_support = 1 # retained_exon 7794215-7794223 (orient:+) max_ev_support = 2 scaffold_9 + retained_exons 7794215-7794223 asmbl_54134,asmbl_54135,asmbl_54138,asmbl_54140 scaffold_9 + intron_skips_exon 7793887-7795348 asmbl_54133,asmbl_54139 // Retained and Spliced Intron # retained_intron 7796656-7797444 (orient:+) max_ev_support = 1 # spliced_intron 7796656-7797444 (orient:+) max_ev_support = 2 scaffold_9 + intron 7796656-7797444 asmbl_54133,asmbl_54134,asmbl_54141 scaffold_9 + retained_intron 7796656-7797444 asmbl_54135,asmbl_54138,asmbl_54139,asmbl_54140 // Retained and Spliced Intron # retained_intron 8180579-8180907 (orient:+) max_ev_support = 3 # spliced_intron 8180579-8180907 (orient:+) max_ev_support = 1 scaffold_9 + intron 8180579-8180907 asmbl_54158 scaffold_9 + retained_intron 8180579-8180907 asmbl_54156,asmbl_54157 // Retained and Spliced Intron # retained_intron 8395093-8395319 (orient:+) max_ev_support = 2 # spliced_intron 8395093-8395319 (orient:+) max_ev_support = 1 scaffold_9 + intron 8395093-8395319 asmbl_54171,asmbl_54173 scaffold_9 + retained_intron 8395093-8395319 asmbl_54167,asmbl_54170,asmbl_54172 // Retained and Spliced Intron # retained_intron 8395341-8395484 (orient:+) max_ev_support = 2 # spliced_intron 8395341-8395484 (orient:+) max_ev_support = 1 scaffold_9 + intron 8395341-8395484 asmbl_54172 scaffold_9 + retained_intron 8395341-8395484 asmbl_54167,asmbl_54170,asmbl_54173 // Retained and Spliced Intron # retained_intron 8396407-8396490 (orient:+) max_ev_support = 2 # spliced_intron 8396407-8396490 (orient:+) max_ev_support = 2 scaffold_9 + intron 8396407-8396490 asmbl_54166,asmbl_54167,asmbl_54168,asmbl_54170,asmbl_54171,asmbl_54172,asmbl_54173 scaffold_9 + retained_intron 8396407-8396490 asmbl_54169 // Retained and Spliced Intron # retained_intron 8396091-8396249 (orient:+) max_ev_support = 1 # spliced_intron 8396091-8396249 (orient:+) max_ev_support = 2 scaffold_9 + intron 8396091-8396249 asmbl_54166,asmbl_54167,asmbl_54171,asmbl_54172,asmbl_54173 scaffold_9 + retained_intron 8396091-8396249 asmbl_54170 // Retained and Spliced Intron # retained_intron 8396091-8396292 (orient:+) max_ev_support = 1 # spliced_intron 8396091-8396292 (orient:+) max_ev_support = 1 scaffold_9 + intron 8396091-8396292 asmbl_54168 scaffold_9 + retained_intron 8396091-8396292 asmbl_54170 // Exon Skipping and Retention # skipped_exon 8395093-8395925 (orient:+) max_ev_support = 2 # retained_exon 8395320-8395340 (orient:+) max_ev_support = 1 scaffold_9 + retained_exons 8395320-8395340 asmbl_54171 scaffold_9 + intron_skips_exon 8395093-8395925 asmbl_54166,asmbl_54168 // Exon Skipping and Retention # skipped_exon 8395093-8395925 (orient:+) max_ev_support = 2 # retained_exon 8395485-8395534 (orient:+) max_ev_support = 1 scaffold_9 + retained_exons 8395485-8395534 asmbl_54172 scaffold_9 + intron_skips_exon 8395093-8395925 asmbl_54166,asmbl_54168 // Exon Skipping and Retention # skipped_exon 8395341-8395973 (orient:+) max_ev_support = 1 # retained_exon 8395485-8395534 (orient:+) max_ev_support = 1 scaffold_9 + retained_exons 8395485-8395534 asmbl_54172 scaffold_9 + intron_skips_exon 8395341-8395973 asmbl_54171 // Exon Skipping and Retention # skipped_exon 8395093-8395925 (orient:+) max_ev_support = 2 # retained_exon 8395320-8395534 (orient:+) max_ev_support = 1 scaffold_9 + retained_exons 8395320-8395534 asmbl_54173 scaffold_9 + intron_skips_exon 8395093-8395925 asmbl_54166,asmbl_54168 // Retained and Spliced Intron # retained_intron 8934348-8934433 (orient:+) max_ev_support = 1 # spliced_intron 8934348-8934433 (orient:+) max_ev_support = 2 scaffold_9 + intron 8934348-8934433 asmbl_54181,asmbl_54182 scaffold_9 + retained_intron 8934348-8934433 asmbl_54183 // Retained and Spliced Intron # retained_intron 9369953-9370052 (orient:+) max_ev_support = 1 # spliced_intron 9369953-9370052 (orient:+) max_ev_support = 2 scaffold_9 + intron 9369953-9370052 asmbl_54197,asmbl_54199 scaffold_9 + retained_intron 9369953-9370052 asmbl_54198 // Retained and Spliced Intron # retained_intron 9547344-9547423 (orient:+) max_ev_support = 1 # spliced_intron 9547344-9547423 (orient:+) max_ev_support = 2 scaffold_9 + intron 9547344-9547423 asmbl_54203 scaffold_9 + retained_intron 9547344-9547423 asmbl_54204 // Retained and Spliced Intron # retained_intron 9643517-9643587 (orient:+) max_ev_support = 1 # spliced_intron 9643517-9643587 (orient:+) max_ev_support = 2 scaffold_9 + intron 9643517-9643587 asmbl_54211 scaffold_9 + retained_intron 9643517-9643587 asmbl_54212 // Retained and Spliced Intron # retained_intron 9644933-9645015 (orient:+) max_ev_support = 1 # spliced_intron 9644933-9645015 (orient:+) max_ev_support = 3 scaffold_9 + intron 9644933-9645015 asmbl_54213 scaffold_9 + retained_intron 9644933-9645015 asmbl_54214 // Retained and Spliced Intron # retained_intron 9648651-9648733 (orient:+) max_ev_support = 1 # spliced_intron 9648651-9648733 (orient:+) max_ev_support = 2 scaffold_9 + intron 9648651-9648733 asmbl_54216 scaffold_9 + retained_intron 9648651-9648733 asmbl_54217 // Exon Skipping and Retention # skipped_exon 9656031-9656875 (orient:+) max_ev_support = 1 # retained_exon 9656293-9656349 (orient:+) max_ev_support = 2 scaffold_9 + retained_exons 9656293-9656349 asmbl_54218,asmbl_54220 scaffold_9 + intron_skips_exon 9656031-9656875 asmbl_54223,asmbl_54224,asmbl_54225,asmbl_54226 // Exon Skipping and Retention # skipped_exon 9657137-9657821 (orient:+) max_ev_support = 1 # retained_exon 9657297-9657447 (orient:+) max_ev_support = 2 scaffold_9 + retained_exons 9657297-9657447 asmbl_54218,asmbl_54223,asmbl_54225 scaffold_9 + intron_skips_exon 9657137-9657821 asmbl_54224 // Retained and Spliced Intron # retained_intron 9657137-9657296 (orient:+) max_ev_support = 1 # spliced_intron 9657137-9657296 (orient:+) max_ev_support = 2 scaffold_9 + intron 9657137-9657296 asmbl_54218,asmbl_54223,asmbl_54225 scaffold_9 + retained_intron 9657137-9657296 asmbl_54220,asmbl_54221,asmbl_54222,asmbl_54226 // Retained and Spliced Intron # retained_intron 9656350-9656875 (orient:+) max_ev_support = 1 # spliced_intron 9656350-9656875 (orient:+) max_ev_support = 2 scaffold_9 + intron 9656350-9656875 asmbl_54218,asmbl_54220 scaffold_9 + retained_intron 9656350-9656875 asmbl_54221,asmbl_54222 // Retained and Spliced Intron # retained_intron 9706825-9707000 (orient:+) max_ev_support = 3 # spliced_intron 9706825-9707000 (orient:+) max_ev_support = 1 scaffold_9 + intron 9706825-9707000 asmbl_54237,asmbl_54238 scaffold_9 + retained_intron 9706825-9707000 asmbl_54229 // Retained and Spliced Intron # retained_intron 9706825-9707265 (orient:+) max_ev_support = 3 # spliced_intron 9706825-9707265 (orient:+) max_ev_support = 2 scaffold_9 + intron 9706825-9707265 asmbl_54236 scaffold_9 + retained_intron 9706825-9707265 asmbl_54229 // Retained and Spliced Intron # retained_intron 9706825-9707760 (orient:+) max_ev_support = 3 # spliced_intron 9706825-9707760 (orient:+) max_ev_support = 2 scaffold_9 + intron 9706825-9707760 asmbl_54231 scaffold_9 + retained_intron 9706825-9707760 asmbl_54229 // Retained and Spliced Intron # retained_intron 9707335-9707760 (orient:+) max_ev_support = 3 # spliced_intron 9707335-9707760 (orient:+) max_ev_support = 2 scaffold_9 + intron 9707335-9707760 asmbl_54236,asmbl_54237 scaffold_9 + retained_intron 9707335-9707760 asmbl_54229,asmbl_54238 // Exon Skipping and Retention # skipped_exon 9705515-9707760 (orient:+) max_ev_support = 2 # retained_exon 9706783-9706824 (orient:+) max_ev_support = 2 scaffold_9 + retained_exons 9706783-9706824 asmbl_54231,asmbl_54238 scaffold_9 + intron_skips_exon 9705515-9707760 asmbl_54235,asmbl_54239 // Exon Skipping and Retention # skipped_exon 9706825-9707760 (orient:+) max_ev_support = 2 # retained_exon 9707266-9707334 (orient:+) max_ev_support = 2 scaffold_9 + retained_exons 9707266-9707334 asmbl_54236 scaffold_9 + intron_skips_exon 9706825-9707760 asmbl_54231 // Exon Skipping and Retention # skipped_exon 9722574-9723219 (orient:+) max_ev_support = 1 # retained_exon 9722941-9723030 (orient:+) max_ev_support = 2 scaffold_9 + retained_exons 9722941-9723030 asmbl_54243 scaffold_9 + intron_skips_exon 9722574-9723219 asmbl_54244 // Retained and Spliced Intron # retained_intron 9853052-9854248 (orient:+) max_ev_support = 1 # spliced_intron 9853052-9854248 (orient:+) max_ev_support = 1 scaffold_9 + intron 9853052-9854248 asmbl_54265 scaffold_9 + retained_intron 9853052-9854248 asmbl_54266 // Retained and Spliced Intron # retained_intron 9853059-9854248 (orient:+) max_ev_support = 1 # spliced_intron 9853059-9854248 (orient:+) max_ev_support = 2 scaffold_9 + intron 9853059-9854248 asmbl_54264 scaffold_9 + retained_intron 9853059-9854248 asmbl_54266 // Retained and Spliced Intron # retained_intron 10063361-10063447 (orient:+) max_ev_support = 3 # spliced_intron 10063361-10063447 (orient:+) max_ev_support = 3 scaffold_9 + intron 10063361-10063447 asmbl_54274 scaffold_9 + retained_intron 10063361-10063447 asmbl_54275,asmbl_54276 // Exon Skipping and Retention # skipped_exon 10916510-10917412 (orient:+) max_ev_support = 2 # retained_exon 10916874-10917011 (orient:+) max_ev_support = 2 scaffold_9 + retained_exons 10916874-10917011 asmbl_54307,asmbl_54311 scaffold_9 + intron_skips_exon 10916510-10917412 asmbl_54308,asmbl_54312,asmbl_54313 // Retained and Spliced Intron # retained_intron 10918975-10919509 (orient:+) max_ev_support = 1 # spliced_intron 10918975-10919509 (orient:+) max_ev_support = 2 scaffold_9 + intron 10918975-10919509 asmbl_54307,asmbl_54308 scaffold_9 + retained_intron 10918975-10919509 asmbl_54311,asmbl_54312 // Retained and Spliced Intron # retained_intron 11054396-11054475 (orient:+) max_ev_support = 2 # spliced_intron 11054396-11054475 (orient:+) max_ev_support = 2 scaffold_9 + intron 11054396-11054475 asmbl_54331 scaffold_9 + retained_intron 11054396-11054475 asmbl_54332 // Exon Skipping and Retention # skipped_exon 11542871-11543302 (orient:+) max_ev_support = 2 # retained_exon 11542949-11543082 (orient:+) max_ev_support = 3 scaffold_9 + retained_exons 11542949-11543082 asmbl_54355,asmbl_54357,asmbl_54358 scaffold_9 + intron_skips_exon 11542871-11543302 asmbl_54356 // Retained and Spliced Intron # retained_intron 11777366-11777484 (orient:+) max_ev_support = 2 # spliced_intron 11777366-11777484 (orient:+) max_ev_support = 1 scaffold_9 + intron 11777366-11777484 asmbl_54379 scaffold_9 + retained_intron 11777366-11777484 asmbl_54378 // Retained and Spliced Intron # retained_intron 11777566-11777749 (orient:+) max_ev_support = 2 # spliced_intron 11777566-11777749 (orient:+) max_ev_support = 1 scaffold_9 + intron 11777566-11777749 asmbl_54379 scaffold_9 + retained_intron 11777566-11777749 asmbl_54378 // Retained and Spliced Intron # retained_intron 11815085-11815410 (orient:+) max_ev_support = 2 # spliced_intron 11815085-11815410 (orient:+) max_ev_support = 2 scaffold_9 + intron 11815085-11815410 asmbl_54382,asmbl_54384 scaffold_9 + retained_intron 11815085-11815410 asmbl_54381 // Retained and Spliced Intron # retained_intron 11815672-11815756 (orient:+) max_ev_support = 2 # spliced_intron 11815672-11815756 (orient:+) max_ev_support = 2 scaffold_9 + intron 11815672-11815756 asmbl_54382 scaffold_9 + retained_intron 11815672-11815756 asmbl_54383 // Retained and Spliced Intron # retained_intron 11835838-11835897 (orient:+) max_ev_support = 3 # spliced_intron 11835838-11835897 (orient:+) max_ev_support = 1 scaffold_9 + intron 11835838-11835897 asmbl_54386 scaffold_9 + retained_intron 11835838-11835897 asmbl_54385 // Retained and Spliced Intron # retained_intron 11877608-11877697 (orient:+) max_ev_support = 2 # spliced_intron 11877608-11877697 (orient:+) max_ev_support = 1 scaffold_9 + intron 11877608-11877697 asmbl_54391 scaffold_9 + retained_intron 11877608-11877697 asmbl_54390 // Retained and Spliced Intron # retained_intron 12012109-12012204 (orient:+) max_ev_support = 2 # spliced_intron 12012109-12012204 (orient:+) max_ev_support = 1 scaffold_9 + intron 12012109-12012204 asmbl_54407 scaffold_9 + retained_intron 12012109-12012204 asmbl_54405 // Retained and Spliced Intron # retained_intron 12012157-12012204 (orient:+) max_ev_support = 2 # spliced_intron 12012157-12012204 (orient:+) max_ev_support = 1 scaffold_9 + intron 12012157-12012204 asmbl_54406 scaffold_9 + retained_intron 12012157-12012204 asmbl_54405 // Retained and Spliced Intron # retained_intron 12112505-12112865 (orient:+) max_ev_support = 1 # spliced_intron 12112505-12112865 (orient:+) max_ev_support = 1 scaffold_9 + intron 12112505-12112865 asmbl_54411,asmbl_54412,asmbl_54413 scaffold_9 + retained_intron 12112505-12112865 asmbl_54410 // Retained and Spliced Intron # retained_intron 12112505-12113296 (orient:+) max_ev_support = 1 # spliced_intron 12112505-12113296 (orient:+) max_ev_support = 2 scaffold_9 + intron 12112505-12113296 asmbl_54409 scaffold_9 + retained_intron 12112505-12113296 asmbl_54410 // Retained and Spliced Intron # retained_intron 12112957-12113296 (orient:+) max_ev_support = 1 # spliced_intron 12112957-12113296 (orient:+) max_ev_support = 1 scaffold_9 + intron 12112957-12113296 asmbl_54411,asmbl_54413 scaffold_9 + retained_intron 12112957-12113296 asmbl_54410,asmbl_54412 // Retained and Spliced Intron # retained_intron 12113015-12113296 (orient:+) max_ev_support = 1 # spliced_intron 12113015-12113296 (orient:+) max_ev_support = 1 scaffold_9 + intron 12113015-12113296 asmbl_54414 scaffold_9 + retained_intron 12113015-12113296 asmbl_54410,asmbl_54412 // Exon Skipping and Retention # skipped_exon 12112505-12113296 (orient:+) max_ev_support = 2 # retained_exon 12112866-12112956 (orient:+) max_ev_support = 1 scaffold_9 + retained_exons 12112866-12112956 asmbl_54411,asmbl_54413 scaffold_9 + intron_skips_exon 12112505-12113296 asmbl_54409 // Retained and Spliced Intron # retained_intron 12270251-12270362 (orient:+) max_ev_support = 1 # spliced_intron 12270251-12270362 (orient:+) max_ev_support = 2 scaffold_9 + intron 12270251-12270362 asmbl_54422 scaffold_9 + retained_intron 12270251-12270362 asmbl_54424,asmbl_54425 // Retained and Spliced Intron # retained_intron 12305541-12305790 (orient:+) max_ev_support = 3 # spliced_intron 12305541-12305790 (orient:+) max_ev_support = 2 scaffold_9 + intron 12305541-12305790 asmbl_54430 scaffold_9 + retained_intron 12305541-12305790 asmbl_54429 // Retained and Spliced Intron # retained_intron 12436520-12436852 (orient:+) max_ev_support = 3 # spliced_intron 12436520-12436852 (orient:+) max_ev_support = 1 scaffold_9 + intron 12436520-12436852 asmbl_54432 scaffold_9 + retained_intron 12436520-12436852 asmbl_54431 // Retained and Spliced Intron # retained_intron 12438282-12438337 (orient:+) max_ev_support = 3 # spliced_intron 12438282-12438337 (orient:+) max_ev_support = 1 scaffold_9 + intron 12438282-12438337 asmbl_54433 scaffold_9 + retained_intron 12438282-12438337 asmbl_54431 // Retained and Spliced Intron # retained_intron 12476191-12476332 (orient:+) max_ev_support = 2 # spliced_intron 12476191-12476332 (orient:+) max_ev_support = 1 scaffold_9 + intron 12476191-12476332 asmbl_54439,asmbl_54440 scaffold_9 + retained_intron 12476191-12476332 asmbl_54438 // Retained and Spliced Intron # retained_intron 12831578-12831611 (orient:+) max_ev_support = 1 # spliced_intron 12831578-12831611 (orient:+) max_ev_support = 1 scaffold_9 + intron 12831578-12831611 asmbl_54471 scaffold_9 + retained_intron 12831578-12831611 asmbl_54472 // Retained and Spliced Intron # retained_intron 13040881-13040907 (orient:+) max_ev_support = 1 # spliced_intron 13040881-13040907 (orient:+) max_ev_support = 1 scaffold_9 + intron 13040881-13040907 asmbl_54482 scaffold_9 + retained_intron 13040881-13040907 asmbl_54483 // Retained and Spliced Intron # retained_intron 13278982-13279273 (orient:+) max_ev_support = 2 # spliced_intron 13278982-13279273 (orient:+) max_ev_support = 1 scaffold_9 + intron 13278982-13279273 asmbl_54492,asmbl_54493 scaffold_9 + retained_intron 13278982-13279273 asmbl_54491 // Retained and Spliced Intron # retained_intron 13279621-13279904 (orient:+) max_ev_support = 1 # spliced_intron 13279621-13279904 (orient:+) max_ev_support = 3 scaffold_9 + intron 13279621-13279904 asmbl_54491,asmbl_54492 scaffold_9 + retained_intron 13279621-13279904 asmbl_54493 // Exon Skipping and Retention # skipped_exon 13606570-13608048 (orient:+) max_ev_support = 2 # retained_exon 13607545-13607747 (orient:+) max_ev_support = 2 scaffold_9 + retained_exons 13607545-13607747 asmbl_54505 scaffold_9 + intron_skips_exon 13606570-13608048 asmbl_54504 // Retained and Spliced Intron # retained_intron 13640033-13640444 (orient:+) max_ev_support = 5 # spliced_intron 13640033-13640444 (orient:+) max_ev_support = 2 scaffold_9 + intron 13640033-13640444 asmbl_54511 scaffold_9 + retained_intron 13640033-13640444 asmbl_54510 // Exon Skipping and Retention # skipped_exon 14039157-14041365 (orient:+) max_ev_support = 3 # retained_exon 14039466-14039546 (orient:+) max_ev_support = 3 scaffold_9 + retained_exons 14039466-14039546 asmbl_54517 scaffold_9 + intron_skips_exon 14039157-14041365 asmbl_54518,asmbl_54522 // Retained and Spliced Intron # retained_intron 14039157-14039465 (orient:+) max_ev_support = 2 # spliced_intron 14039157-14039465 (orient:+) max_ev_support = 3 scaffold_9 + intron 14039157-14039465 asmbl_54517 scaffold_9 + retained_intron 14039157-14039465 asmbl_54519 // Exon Skipping and Retention # skipped_exon 15384227-15384899 (orient:+) max_ev_support = 2 # retained_exon 15384544-15384598 (orient:+) max_ev_support = 2 scaffold_9 + retained_exons 15384544-15384598 asmbl_54558,asmbl_54561 scaffold_9 + intron_skips_exon 15384227-15384899 asmbl_54559,asmbl_54560,asmbl_54564,asmbl_54565 // Retained and Spliced Intron # retained_intron 15384227-15384504 (orient:+) max_ev_support = 1 # spliced_intron 15384227-15384504 (orient:+) max_ev_support = 1 scaffold_9 + intron 15384227-15384504 asmbl_54563 scaffold_9 + retained_intron 15384227-15384504 asmbl_54562 // Retained and Spliced Intron # retained_intron 15384227-15384543 (orient:+) max_ev_support = 1 # spliced_intron 15384227-15384543 (orient:+) max_ev_support = 2 scaffold_9 + intron 15384227-15384543 asmbl_54558,asmbl_54561 scaffold_9 + retained_intron 15384227-15384543 asmbl_54562 // Retained and Spliced Intron # retained_intron 15384227-15384899 (orient:+) max_ev_support = 1 # spliced_intron 15384227-15384899 (orient:+) max_ev_support = 2 scaffold_9 + intron 15384227-15384899 asmbl_54559,asmbl_54560,asmbl_54564,asmbl_54565 scaffold_9 + retained_intron 15384227-15384899 asmbl_54562 // Retained and Spliced Intron # retained_intron 15384599-15384899 (orient:+) max_ev_support = 1 # spliced_intron 15384599-15384899 (orient:+) max_ev_support = 2 scaffold_9 + intron 15384599-15384899 asmbl_54558,asmbl_54561,asmbl_54563 scaffold_9 + retained_intron 15384599-15384899 asmbl_54562 // Retained and Spliced Intron # retained_intron 15394570-15395108 (orient:+) max_ev_support = 3 # spliced_intron 15394570-15395108 (orient:+) max_ev_support = 3 scaffold_9 + intron 15394570-15395108 asmbl_54566,asmbl_54568,asmbl_54571,asmbl_54572 scaffold_9 + retained_intron 15394570-15395108 asmbl_54567 // Retained and Spliced Intron # retained_intron 15395597-15395679 (orient:+) max_ev_support = 2 # spliced_intron 15395597-15395679 (orient:+) max_ev_support = 3 scaffold_9 + intron 15395597-15395679 asmbl_54566,asmbl_54567,asmbl_54568,asmbl_54572 scaffold_9 + retained_intron 15395597-15395679 asmbl_54571 // Retained and Spliced Intron # retained_intron 15396303-15396380 (orient:+) max_ev_support = 2 # spliced_intron 15396303-15396380 (orient:+) max_ev_support = 3 scaffold_9 + intron 15396303-15396380 asmbl_54566,asmbl_54567,asmbl_54568,asmbl_54571 scaffold_9 + retained_intron 15396303-15396380 asmbl_54572 // Exon Skipping and Retention # skipped_exon 15589007-15589902 (orient:+) max_ev_support = 2 # retained_exon 15589170-15589184 (orient:+) max_ev_support = 1 scaffold_9 + retained_exons 15589170-15589184 asmbl_54580 scaffold_9 + intron_skips_exon 15589007-15589902 asmbl_54579,asmbl_54581 // Retained and Spliced Intron # retained_intron 15589185-15589902 (orient:+) max_ev_support = 1 # spliced_intron 15589185-15589902 (orient:+) max_ev_support = 1 scaffold_9 + intron 15589185-15589902 asmbl_54580 scaffold_9 + retained_intron 15589185-15589902 asmbl_54582,asmbl_54583 // Retained and Spliced Intron # retained_intron 15746966-15746996 (orient:+) max_ev_support = 3 # spliced_intron 15746966-15746996 (orient:+) max_ev_support = 1 scaffold_9 + intron 15746966-15746996 asmbl_54586 scaffold_9 + retained_intron 15746966-15746996 asmbl_54585 // Retained and Spliced Intron # retained_intron 16340481-16340560 (orient:+) max_ev_support = 1 # spliced_intron 16340481-16340560 (orient:+) max_ev_support = 1 scaffold_9 + intron 16340481-16340560 asmbl_54592 scaffold_9 + retained_intron 16340481-16340560 asmbl_54591 // Retained and Spliced Intron # retained_intron 16570389-16570696 (orient:+) max_ev_support = 2 # spliced_intron 16570389-16570696 (orient:+) max_ev_support = 2 scaffold_9 + intron 16570389-16570696 asmbl_54597,asmbl_54604 scaffold_9 + retained_intron 16570389-16570696 asmbl_54598,asmbl_54599,asmbl_54600,asmbl_54601,asmbl_54602,asmbl_54603,asmbl_54605 // Retained and Spliced Intron # retained_intron 16569591-16569821 (orient:+) max_ev_support = 2 # spliced_intron 16569591-16569821 (orient:+) max_ev_support = 2 scaffold_9 + intron 16569591-16569821 asmbl_54601 scaffold_9 + retained_intron 16569591-16569821 asmbl_54599,asmbl_54602 // Retained and Spliced Intron # retained_intron 16569591-16569995 (orient:+) max_ev_support = 2 # spliced_intron 16569591-16569995 (orient:+) max_ev_support = 2 scaffold_9 + intron 16569591-16569995 asmbl_54597,asmbl_54598,asmbl_54600,asmbl_54603,asmbl_54604,asmbl_54605 scaffold_9 + retained_intron 16569591-16569995 asmbl_54599,asmbl_54602 // Retained and Spliced Intron # retained_intron 16570130-16570300 (orient:+) max_ev_support = 2 # spliced_intron 16570130-16570300 (orient:+) max_ev_support = 2 scaffold_9 + intron 16570130-16570300 asmbl_54597,asmbl_54598,asmbl_54599,asmbl_54602,asmbl_54603,asmbl_54604,asmbl_54605 scaffold_9 + retained_intron 16570130-16570300 asmbl_54600,asmbl_54601 // Retained and Spliced Intron # retained_intron 16568288-16568413 (orient:+) max_ev_support = 2 # spliced_intron 16568288-16568413 (orient:+) max_ev_support = 2 scaffold_9 + intron 16568288-16568413 asmbl_54598,asmbl_54599,asmbl_54600,asmbl_54602,asmbl_54603,asmbl_54604 scaffold_9 + retained_intron 16568288-16568413 asmbl_54601,asmbl_54605 // Retained and Spliced Intron # retained_intron 16575074-16575191 (orient:+) max_ev_support = 2 # spliced_intron 16575074-16575191 (orient:+) max_ev_support = 1 scaffold_9 + intron 16575074-16575191 asmbl_54608 scaffold_9 + retained_intron 16575074-16575191 asmbl_54607 // Retained and Spliced Intron # retained_intron 16575103-16575191 (orient:+) max_ev_support = 2 # spliced_intron 16575103-16575191 (orient:+) max_ev_support = 2 scaffold_9 + intron 16575103-16575191 asmbl_54606 scaffold_9 + retained_intron 16575103-16575191 asmbl_54607 // Retained and Spliced Intron # retained_intron 17454872-17454904 (orient:+) max_ev_support = 2 # spliced_intron 17454872-17454904 (orient:+) max_ev_support = 1 scaffold_9 + intron 17454872-17454904 asmbl_54632,asmbl_54633 scaffold_9 + retained_intron 17454872-17454904 asmbl_54630 // Exon Skipping and Retention # skipped_exon 17742976-17743198 (orient:+) max_ev_support = 2 # retained_exon 17743057-17743120 (orient:+) max_ev_support = 2 scaffold_9 + retained_exons 17743057-17743120 asmbl_54639,asmbl_54640,asmbl_54641 scaffold_9 + intron_skips_exon 17742976-17743198 asmbl_54643,asmbl_54645 // Retained and Spliced Intron # retained_intron 17743121-17743198 (orient:+) max_ev_support = 1 # spliced_intron 17743121-17743198 (orient:+) max_ev_support = 2 scaffold_9 + intron 17743121-17743198 asmbl_54639,asmbl_54640,asmbl_54641 scaffold_9 + retained_intron 17743121-17743198 asmbl_54642 // Retained and Spliced Intron # retained_intron 17743454-17743546 (orient:+) max_ev_support = 2 # spliced_intron 17743454-17743546 (orient:+) max_ev_support = 2 scaffold_9 + intron 17743454-17743546 asmbl_54639,asmbl_54640,asmbl_54641,asmbl_54642,asmbl_54643,asmbl_54645 scaffold_9 + retained_intron 17743454-17743546 asmbl_54644 // Retained and Spliced Intron # retained_intron 17849137-17851107 (orient:+) max_ev_support = 5 # spliced_intron 17849137-17851107 (orient:+) max_ev_support = 1 scaffold_9 + intron 17849137-17851107 asmbl_54657,asmbl_54658 scaffold_9 + retained_intron 17849137-17851107 asmbl_54653 // Retained and Spliced Intron # retained_intron 17851315-17851392 (orient:+) max_ev_support = 1 # spliced_intron 17851315-17851392 (orient:+) max_ev_support = 2 scaffold_9 + intron 17851315-17851392 asmbl_54654,asmbl_54656,asmbl_54658 scaffold_9 + retained_intron 17851315-17851392 asmbl_54653 // Retained and Spliced Intron # retained_intron 17851315-17852001 (orient:+) max_ev_support = 1 # spliced_intron 17851315-17852001 (orient:+) max_ev_support = 2 scaffold_9 + intron 17851315-17852001 asmbl_54655,asmbl_54657 scaffold_9 + retained_intron 17851315-17852001 asmbl_54653 // Retained and Spliced Intron # retained_intron 17851504-17851736 (orient:+) max_ev_support = 2 # spliced_intron 17851504-17851736 (orient:+) max_ev_support = 2 scaffold_9 + intron 17851504-17851736 asmbl_54656 scaffold_9 + retained_intron 17851504-17851736 asmbl_54653,asmbl_54654,asmbl_54658 // Retained and Spliced Intron # retained_intron 17851854-17852001 (orient:+) max_ev_support = 2 # spliced_intron 17851854-17852001 (orient:+) max_ev_support = 2 scaffold_9 + intron 17851854-17852001 asmbl_54656,asmbl_54658 scaffold_9 + retained_intron 17851854-17852001 asmbl_54653,asmbl_54654 // Exon Skipping and Retention # skipped_exon 17851315-17852001 (orient:+) max_ev_support = 2 # retained_exon 17851393-17851853 (orient:+) max_ev_support = 2 scaffold_9 + retained_exons 17851393-17851503,17851737-17851853 asmbl_54656 scaffold_9 + retained_exons 17851393-17851853 asmbl_54658 scaffold_9 + intron_skips_exon 17851315-17852001 asmbl_54655,asmbl_54657 // Retained and Spliced Intron # retained_intron 537756-537789 (orient:-) max_ev_support = 3 # spliced_intron 537756-537789 (orient:-) max_ev_support = 1 scaffold_9 - intron 537756-537789 asmbl_54801 scaffold_9 - retained_intron 537756-537789 asmbl_54800 // Exon Skipping and Retention # skipped_exon 1820438-1822164 (orient:-) max_ev_support = 1 # retained_exon 1821772-1821838 (orient:-) max_ev_support = 1 scaffold_9 - retained_exons 1821772-1821838 asmbl_54850 scaffold_9 - intron_skips_exon 1820438-1822164 asmbl_54849 // Retained and Spliced Intron # retained_intron 2400442-2400475 (orient:-) max_ev_support = 1 # spliced_intron 2400442-2400475 (orient:-) max_ev_support = 1 scaffold_9 - intron 2400442-2400475 asmbl_54868 scaffold_9 - retained_intron 2400442-2400475 asmbl_54870 // Retained and Spliced Intron # retained_intron 2468905-2469096 (orient:-) max_ev_support = 1 # spliced_intron 2468905-2469096 (orient:-) max_ev_support = 2 scaffold_9 - intron 2468905-2469096 asmbl_54875 scaffold_9 - retained_intron 2468905-2469096 asmbl_54876 // Retained and Spliced Intron # retained_intron 2502740-2502833 (orient:-) max_ev_support = 1 # spliced_intron 2502740-2502833 (orient:-) max_ev_support = 2 scaffold_9 - intron 2502740-2502833 asmbl_54878 scaffold_9 - retained_intron 2502740-2502833 asmbl_54879 // Retained and Spliced Intron # retained_intron 2808854-2809003 (orient:-) max_ev_support = 3 # spliced_intron 2808854-2809003 (orient:-) max_ev_support = 1 scaffold_9 - intron 2808854-2809003 asmbl_54888 scaffold_9 - retained_intron 2808854-2809003 asmbl_54884,asmbl_54885 // Retained and Spliced Intron # retained_intron 3413981-3414140 (orient:-) max_ev_support = 2 # spliced_intron 3413981-3414140 (orient:-) max_ev_support = 1 scaffold_9 - intron 3413981-3414140 asmbl_54901,asmbl_54904 scaffold_9 - retained_intron 3413981-3414140 asmbl_54900 // Retained and Spliced Intron # retained_intron 3414002-3414140 (orient:-) max_ev_support = 2 # spliced_intron 3414002-3414140 (orient:-) max_ev_support = 1 scaffold_9 - intron 3414002-3414140 asmbl_54902,asmbl_54905 scaffold_9 - retained_intron 3414002-3414140 asmbl_54900 // Retained and Spliced Intron # retained_intron 3673495-3673823 (orient:-) max_ev_support = 4 # spliced_intron 3673495-3673823 (orient:-) max_ev_support = 3 scaffold_9 - intron 3673495-3673823 asmbl_54920,asmbl_54921,asmbl_54925,asmbl_54926,asmbl_54927,asmbl_54928 scaffold_9 - retained_intron 3673495-3673823 asmbl_54919 // Exon Skipping and Retention # skipped_exon 3674467-3676841 (orient:-) max_ev_support = 3 # retained_exon 3675428-3675783 (orient:-) max_ev_support = 1 scaffold_9 - retained_exons 3675428-3675783 asmbl_54920 scaffold_9 - intron_skips_exon 3674467-3676841 asmbl_54921,asmbl_54927,asmbl_54928 // Retained and Spliced Intron # retained_intron 3672539-3672630 (orient:-) max_ev_support = 1 # spliced_intron 3672539-3672630 (orient:-) max_ev_support = 3 scaffold_9 - intron 3672539-3672630 asmbl_54920,asmbl_54921,asmbl_54925,asmbl_54926 scaffold_9 - retained_intron 3672539-3672630 asmbl_54927 // Retained and Spliced Intron # retained_intron 3711582-3711674 (orient:-) max_ev_support = 3 # spliced_intron 3711582-3711674 (orient:-) max_ev_support = 3 scaffold_9 - intron 3711582-3711674 asmbl_54932 scaffold_9 - retained_intron 3711582-3711674 asmbl_54933 // Retained and Spliced Intron # retained_intron 3912783-3912902 (orient:-) max_ev_support = 2 # spliced_intron 3912783-3912902 (orient:-) max_ev_support = 3 scaffold_9 - intron 3912783-3912902 asmbl_54950,asmbl_54952 scaffold_9 - retained_intron 3912783-3912902 asmbl_54951,asmbl_54953 // Retained and Spliced Intron # retained_intron 4160412-4160541 (orient:-) max_ev_support = 1 # spliced_intron 4160412-4160541 (orient:-) max_ev_support = 2 scaffold_9 - intron 4160412-4160541 asmbl_54957,asmbl_54958 scaffold_9 - retained_intron 4160412-4160541 asmbl_54959 // Retained and Spliced Intron # retained_intron 5757730-5758224 (orient:-) max_ev_support = 6 # spliced_intron 5757730-5758224 (orient:-) max_ev_support = 2 scaffold_9 - intron 5757730-5758224 asmbl_55028,asmbl_55029 scaffold_9 - retained_intron 5757730-5758224 asmbl_55027 // Retained and Spliced Intron # retained_intron 5844925-5845204 (orient:-) max_ev_support = 2 # spliced_intron 5844925-5845204 (orient:-) max_ev_support = 2 scaffold_9 - intron 5844925-5845204 asmbl_55041 scaffold_9 - retained_intron 5844925-5845204 asmbl_55042 // Retained and Spliced Intron # retained_intron 6240560-6240600 (orient:-) max_ev_support = 2 # spliced_intron 6240560-6240600 (orient:-) max_ev_support = 2 scaffold_9 - intron 6240560-6240600 asmbl_55048 scaffold_9 - retained_intron 6240560-6240600 asmbl_55047 // Retained and Spliced Intron # retained_intron 6396892-6397036 (orient:-) max_ev_support = 1 # spliced_intron 6396892-6397036 (orient:-) max_ev_support = 1 scaffold_9 - intron 6396892-6397036 asmbl_55055 scaffold_9 - retained_intron 6396892-6397036 asmbl_55054 // Retained and Spliced Intron # retained_intron 6396897-6397036 (orient:-) max_ev_support = 1 # spliced_intron 6396897-6397036 (orient:-) max_ev_support = 2 scaffold_9 - intron 6396897-6397036 asmbl_55053 scaffold_9 - retained_intron 6396897-6397036 asmbl_55054 // Retained and Spliced Intron # retained_intron 6717195-6717297 (orient:-) max_ev_support = 1 # spliced_intron 6717195-6717297 (orient:-) max_ev_support = 1 scaffold_9 - intron 6717195-6717297 asmbl_55068,asmbl_55069 scaffold_9 - retained_intron 6717195-6717297 asmbl_55070 // Exon Skipping and Retention # skipped_exon 6741220-6742496 (orient:-) max_ev_support = 2 # retained_exon 6741724-6741829 (orient:-) max_ev_support = 1 scaffold_9 - retained_exons 6741724-6741829 asmbl_55075,asmbl_55076 scaffold_9 - intron_skips_exon 6741220-6742496 asmbl_55072 // Exon Skipping and Retention # skipped_exon 6866921-6867246 (orient:-) max_ev_support = 1 # retained_exon 6867066-6867131 (orient:-) max_ev_support = 2 scaffold_9 - retained_exons 6867066-6867131 asmbl_55082,asmbl_55083 scaffold_9 - intron_skips_exon 6866921-6867246 asmbl_55085 // Retained and Spliced Intron # retained_intron 6903754-6903877 (orient:-) max_ev_support = 2 # spliced_intron 6903754-6903877 (orient:-) max_ev_support = 2 scaffold_9 - intron 6903754-6903877 asmbl_55087,asmbl_55090 scaffold_9 - retained_intron 6903754-6903877 asmbl_55088,asmbl_55091,asmbl_55092 // Retained and Spliced Intron # retained_intron 6901990-6902110 (orient:-) max_ev_support = 2 # spliced_intron 6901990-6902110 (orient:-) max_ev_support = 2 scaffold_9 - intron 6901990-6902110 asmbl_55087,asmbl_55088,asmbl_55090 scaffold_9 - retained_intron 6901990-6902110 asmbl_55089,asmbl_55091,asmbl_55092 // Retained and Spliced Intron # retained_intron 6902292-6902430 (orient:-) max_ev_support = 2 # spliced_intron 6902292-6902430 (orient:-) max_ev_support = 2 scaffold_9 - intron 6902292-6902430 asmbl_55087,asmbl_55088,asmbl_55090 scaffold_9 - retained_intron 6902292-6902430 asmbl_55089,asmbl_55091,asmbl_55092 // Retained and Spliced Intron # retained_intron 6902533-6902622 (orient:-) max_ev_support = 2 # spliced_intron 6902533-6902622 (orient:-) max_ev_support = 2 scaffold_9 - intron 6902533-6902622 asmbl_55087,asmbl_55088,asmbl_55090 scaffold_9 - retained_intron 6902533-6902622 asmbl_55089,asmbl_55091,asmbl_55092 // Retained and Spliced Intron # retained_intron 6902827-6902922 (orient:-) max_ev_support = 2 # spliced_intron 6902827-6902922 (orient:-) max_ev_support = 2 scaffold_9 - intron 6902827-6902922 asmbl_55087,asmbl_55088 scaffold_9 - retained_intron 6902827-6902922 asmbl_55089,asmbl_55090,asmbl_55091,asmbl_55092 // Retained and Spliced Intron # retained_intron 6903131-6903325 (orient:-) max_ev_support = 2 # spliced_intron 6903131-6903325 (orient:-) max_ev_support = 2 scaffold_9 - intron 6903131-6903325 asmbl_55087,asmbl_55088,asmbl_55092 scaffold_9 - retained_intron 6903131-6903325 asmbl_55089,asmbl_55090,asmbl_55091 // Retained and Spliced Intron # retained_intron 6903544-6903648 (orient:-) max_ev_support = 2 # spliced_intron 6903544-6903648 (orient:-) max_ev_support = 2 scaffold_9 - intron 6903544-6903648 asmbl_55087,asmbl_55088,asmbl_55090,asmbl_55091,asmbl_55092 scaffold_9 - retained_intron 6903544-6903648 asmbl_55089 // Retained and Spliced Intron # retained_intron 6904964-6905103 (orient:-) max_ev_support = 2 # spliced_intron 6904964-6905103 (orient:-) max_ev_support = 3 scaffold_9 - intron 6904964-6905103 asmbl_55093 scaffold_9 - retained_intron 6904964-6905103 asmbl_55096 // Retained and Spliced Intron # retained_intron 6904964-6905139 (orient:-) max_ev_support = 2 # spliced_intron 6904964-6905139 (orient:-) max_ev_support = 2 scaffold_9 - intron 6904964-6905139 asmbl_55095 scaffold_9 - retained_intron 6904964-6905139 asmbl_55096 // Exon Skipping and Retention # skipped_exon 6919651-6920387 (orient:-) max_ev_support = 1 # retained_exon 6920093-6920161 (orient:-) max_ev_support = 2 scaffold_9 - retained_exons 6920093-6920161 asmbl_55099,asmbl_55100,asmbl_55103 scaffold_9 - intron_skips_exon 6919651-6920387 asmbl_55101 // Retained and Spliced Intron # retained_intron 6920728-6921103 (orient:-) max_ev_support = 2 # spliced_intron 6920728-6921103 (orient:-) max_ev_support = 2 scaffold_9 - intron 6920728-6921103 asmbl_55099,asmbl_55103 scaffold_9 - retained_intron 6920728-6921103 asmbl_55100 // Retained and Spliced Intron # retained_intron 7823073-7823170 (orient:-) max_ev_support = 1 # spliced_intron 7823073-7823170 (orient:-) max_ev_support = 2 scaffold_9 - intron 7823073-7823170 asmbl_55111 scaffold_9 - retained_intron 7823073-7823170 asmbl_55112 // Exon Skipping and Retention # skipped_exon 8042858-8043401 (orient:-) max_ev_support = 3 # retained_exon 8043171-8043257 (orient:-) max_ev_support = 3 scaffold_9 - retained_exons 8043171-8043257 asmbl_55118 scaffold_9 - intron_skips_exon 8042858-8043401 asmbl_55117 // Retained and Spliced Intron # retained_intron 8399726-8399808 (orient:-) max_ev_support = 1 # spliced_intron 8399726-8399808 (orient:-) max_ev_support = 2 scaffold_9 - intron 8399726-8399808 asmbl_55127 scaffold_9 - retained_intron 8399726-8399808 asmbl_55128 // Exon Skipping and Retention # skipped_exon 8938979-8939567 (orient:-) max_ev_support = 1 # retained_exon 8939254-8939364 (orient:-) max_ev_support = 2 scaffold_9 - retained_exons 8939254-8939364 asmbl_55145,asmbl_55147,asmbl_55149 scaffold_9 - intron_skips_exon 8938979-8939567 asmbl_55146,asmbl_55148 // Retained and Spliced Intron # retained_intron 8939956-8940066 (orient:-) max_ev_support = 2 # spliced_intron 8939956-8940066 (orient:-) max_ev_support = 1 scaffold_9 - intron 8939956-8940066 asmbl_55146,asmbl_55147,asmbl_55148,asmbl_55149 scaffold_9 - retained_intron 8939956-8940066 asmbl_55145 // Retained and Spliced Intron # retained_intron 8948604-8948646 (orient:-) max_ev_support = 2 # spliced_intron 8948604-8948646 (orient:-) max_ev_support = 1 scaffold_9 - intron 8948604-8948646 asmbl_55155 scaffold_9 - retained_intron 8948604-8948646 asmbl_55154 // Retained and Spliced Intron # retained_intron 9405231-9405353 (orient:-) max_ev_support = 4 # spliced_intron 9405231-9405353 (orient:-) max_ev_support = 2 scaffold_9 - intron 9405231-9405353 asmbl_55163 scaffold_9 - retained_intron 9405231-9405353 asmbl_55162 // Retained and Spliced Intron # retained_intron 9470104-9470201 (orient:-) max_ev_support = 1 # spliced_intron 9470104-9470201 (orient:-) max_ev_support = 1 scaffold_9 - intron 9470104-9470201 asmbl_55179,asmbl_55180,asmbl_55181,asmbl_55183,asmbl_55184 scaffold_9 - retained_intron 9470104-9470201 asmbl_55182,asmbl_55185 // Exon Skipping and Retention # skipped_exon 9530448-9530758 (orient:-) max_ev_support = 1 # retained_exon 9530592-9530675 (orient:-) max_ev_support = 2 scaffold_9 - retained_exons 9530592-9530675 asmbl_55189,asmbl_55190,asmbl_55191 scaffold_9 - intron_skips_exon 9530448-9530758 asmbl_55192 // Exon Skipping and Retention # skipped_exon 9531268-9532064 (orient:-) max_ev_support = 1 # retained_exon 9531883-9531909 (orient:-) max_ev_support = 2 scaffold_9 - retained_exons 9531883-9531909 asmbl_55189 scaffold_9 - intron_skips_exon 9531268-9532064 asmbl_55190,asmbl_55191,asmbl_55192 // Retained and Spliced Intron # retained_intron 9596820-9596951 (orient:-) max_ev_support = 2 # spliced_intron 9596820-9596951 (orient:-) max_ev_support = 1 scaffold_9 - intron 9596820-9596951 asmbl_55210 scaffold_9 - retained_intron 9596820-9596951 asmbl_55208,asmbl_55209 // Retained and Spliced Intron # retained_intron 9597034-9597966 (orient:-) max_ev_support = 2 # spliced_intron 9597034-9597966 (orient:-) max_ev_support = 2 scaffold_9 - intron 9597034-9597966 asmbl_55208 scaffold_9 - retained_intron 9597034-9597966 asmbl_55209,asmbl_55210 // Exon Skipping and Retention # skipped_exon 9614148-9615590 (orient:-) max_ev_support = 1 # retained_exon 9614424-9614495 (orient:-) max_ev_support = 2 scaffold_9 - retained_exons 9614424-9614495 asmbl_55216 scaffold_9 - intron_skips_exon 9614148-9615590 asmbl_55219 // Retained and Spliced Intron # retained_intron 9664373-9664460 (orient:-) max_ev_support = 1 # spliced_intron 9664373-9664460 (orient:-) max_ev_support = 1 scaffold_9 - intron 9664373-9664460 asmbl_55229 scaffold_9 - retained_intron 9664373-9664460 asmbl_55230 // Retained and Spliced Intron # retained_intron 9688546-9688614 (orient:-) max_ev_support = 1 # spliced_intron 9688546-9688614 (orient:-) max_ev_support = 1 scaffold_9 - intron 9688546-9688614 asmbl_55239 scaffold_9 - retained_intron 9688546-9688614 asmbl_55237,asmbl_55238 // Retained and Spliced Intron # retained_intron 9688546-9688647 (orient:-) max_ev_support = 1 # spliced_intron 9688546-9688647 (orient:-) max_ev_support = 2 scaffold_9 - intron 9688546-9688647 asmbl_55234,asmbl_55235 scaffold_9 - retained_intron 9688546-9688647 asmbl_55237,asmbl_55238 // Exon Skipping and Retention # skipped_exon 9870174-9871613 (orient:-) max_ev_support = 3 # retained_exon 9871369-9871452 (orient:-) max_ev_support = 2 scaffold_9 - retained_exons 9871369-9871452 asmbl_55243 scaffold_9 - intron_skips_exon 9870174-9871613 asmbl_55242 // Retained and Spliced Intron # retained_intron 11021992-11022126 (orient:-) max_ev_support = 2 # spliced_intron 11021992-11022126 (orient:-) max_ev_support = 1 scaffold_9 - intron 11021992-11022126 asmbl_55266,asmbl_55267 scaffold_9 - retained_intron 11021992-11022126 asmbl_55264,asmbl_55265 // Retained and Spliced Intron # retained_intron 11028497-11028576 (orient:-) max_ev_support = 1 # spliced_intron 11028497-11028576 (orient:-) max_ev_support = 1 scaffold_9 - intron 11028497-11028576 asmbl_55268 scaffold_9 - retained_intron 11028497-11028576 asmbl_55269 // Exon Skipping and Retention # skipped_exon 11464682-11466193 (orient:-) max_ev_support = 1 # retained_exon 11465249-11465302 (orient:-) max_ev_support = 1 scaffold_9 - retained_exons 11465249-11465302 asmbl_55291 scaffold_9 - intron_skips_exon 11464682-11466193 asmbl_55292 // Retained and Spliced Intron # retained_intron 11551049-11551499 (orient:-) max_ev_support = 2 # spliced_intron 11551049-11551499 (orient:-) max_ev_support = 2 scaffold_9 - intron 11551049-11551499 asmbl_55297 scaffold_9 - retained_intron 11551049-11551499 asmbl_55295,asmbl_55296 // Retained and Spliced Intron # retained_intron 11551708-11551928 (orient:-) max_ev_support = 2 # spliced_intron 11551708-11551928 (orient:-) max_ev_support = 2 scaffold_9 - intron 11551708-11551928 asmbl_55296,asmbl_55297 scaffold_9 - retained_intron 11551708-11551928 asmbl_55295 // Retained and Spliced Intron # retained_intron 11793088-11794280 (orient:-) max_ev_support = 1 # spliced_intron 11793088-11794280 (orient:-) max_ev_support = 2 scaffold_9 - intron 11793088-11794280 asmbl_55306,asmbl_55309 scaffold_9 - retained_intron 11793088-11794280 asmbl_55303,asmbl_55308 // Retained and Spliced Intron # retained_intron 11793088-11794485 (orient:-) max_ev_support = 1 # spliced_intron 11793088-11794485 (orient:-) max_ev_support = 2 scaffold_9 - intron 11793088-11794485 asmbl_55304,asmbl_55305 scaffold_9 - retained_intron 11793088-11794485 asmbl_55303,asmbl_55308 // Retained and Spliced Intron # retained_intron 11794319-11794485 (orient:-) max_ev_support = 1 # spliced_intron 11794319-11794485 (orient:-) max_ev_support = 2 scaffold_9 - intron 11794319-11794485 asmbl_55306,asmbl_55309 scaffold_9 - retained_intron 11794319-11794485 asmbl_55303,asmbl_55308 // Exon Skipping and Retention # skipped_exon 11793088-11794485 (orient:-) max_ev_support = 2 # retained_exon 11794281-11794318 (orient:-) max_ev_support = 2 scaffold_9 - retained_exons 11794281-11794318 asmbl_55306,asmbl_55309 scaffold_9 - intron_skips_exon 11793088-11794485 asmbl_55304,asmbl_55305 // Retained and Spliced Intron # retained_intron 11795862-11796216 (orient:-) max_ev_support = 2 # spliced_intron 11795862-11796216 (orient:-) max_ev_support = 1 scaffold_9 - intron 11795862-11796216 asmbl_55303,asmbl_55304,asmbl_55309 scaffold_9 - retained_intron 11795862-11796216 asmbl_55307 // Retained and Spliced Intron # retained_intron 11825456-11825553 (orient:-) max_ev_support = 2 # spliced_intron 11825456-11825553 (orient:-) max_ev_support = 2 scaffold_9 - intron 11825456-11825553 asmbl_55315 scaffold_9 - retained_intron 11825456-11825553 asmbl_55316 // Retained and Spliced Intron # retained_intron 11836844-11837012 (orient:-) max_ev_support = 2 # spliced_intron 11836844-11837012 (orient:-) max_ev_support = 2 scaffold_9 - intron 11836844-11837012 asmbl_55323 scaffold_9 - retained_intron 11836844-11837012 asmbl_55321,asmbl_55322,asmbl_55324 // Retained and Spliced Intron # retained_intron 11837109-11837256 (orient:-) max_ev_support = 1 # spliced_intron 11837109-11837256 (orient:-) max_ev_support = 2 scaffold_9 - intron 11837109-11837256 asmbl_55321,asmbl_55323 scaffold_9 - retained_intron 11837109-11837256 asmbl_55322,asmbl_55324 // Retained and Spliced Intron # retained_intron 11842900-11843151 (orient:-) max_ev_support = 1 # spliced_intron 11842900-11843151 (orient:-) max_ev_support = 2 scaffold_9 - intron 11842900-11843151 asmbl_55325,asmbl_55328,asmbl_55333 scaffold_9 - retained_intron 11842900-11843151 asmbl_55329,asmbl_55330,asmbl_55331,asmbl_55332 // Retained and Spliced Intron # retained_intron 11842903-11843151 (orient:-) max_ev_support = 1 # spliced_intron 11842903-11843151 (orient:-) max_ev_support = 1 scaffold_9 - intron 11842903-11843151 asmbl_55326 scaffold_9 - retained_intron 11842903-11843151 asmbl_55329,asmbl_55330,asmbl_55331,asmbl_55332 // Retained and Spliced Intron # retained_intron 11843256-11843422 (orient:-) max_ev_support = 1 # spliced_intron 11843256-11843422 (orient:-) max_ev_support = 2 scaffold_9 - intron 11843256-11843422 asmbl_55325,asmbl_55326,asmbl_55328,asmbl_55333 scaffold_9 - retained_intron 11843256-11843422 asmbl_55329,asmbl_55330,asmbl_55331,asmbl_55332 // Retained and Spliced Intron # retained_intron 11843488-11843598 (orient:-) max_ev_support = 1 # spliced_intron 11843488-11843598 (orient:-) max_ev_support = 2 scaffold_9 - intron 11843488-11843598 asmbl_55325,asmbl_55326,asmbl_55328,asmbl_55331,asmbl_55333 scaffold_9 - retained_intron 11843488-11843598 asmbl_55329,asmbl_55330,asmbl_55332 // Retained and Spliced Intron # retained_intron 11842283-11842383 (orient:-) max_ev_support = 1 # spliced_intron 11842283-11842383 (orient:-) max_ev_support = 2 scaffold_9 - intron 11842283-11842383 asmbl_55325,asmbl_55326,asmbl_55328,asmbl_55329,asmbl_55330,asmbl_55331 scaffold_9 - retained_intron 11842283-11842383 asmbl_55332 // Retained and Spliced Intron # retained_intron 11842492-11842644 (orient:-) max_ev_support = 1 # spliced_intron 11842492-11842644 (orient:-) max_ev_support = 2 scaffold_9 - intron 11842492-11842644 asmbl_55325,asmbl_55326,asmbl_55328,asmbl_55329,asmbl_55330,asmbl_55331 scaffold_9 - retained_intron 11842492-11842644 asmbl_55332 // Retained and Spliced Intron # retained_intron 11842724-11842821 (orient:-) max_ev_support = 1 # spliced_intron 11842724-11842821 (orient:-) max_ev_support = 2 scaffold_9 - intron 11842724-11842821 asmbl_55325,asmbl_55326,asmbl_55328,asmbl_55329,asmbl_55330,asmbl_55331,asmbl_55333 scaffold_9 - retained_intron 11842724-11842821 asmbl_55332 // Retained and Spliced Intron # retained_intron 11843908-11844161 (orient:-) max_ev_support = 1 # spliced_intron 11843908-11844161 (orient:-) max_ev_support = 2 scaffold_9 - intron 11843908-11844161 asmbl_55325,asmbl_55326,asmbl_55328,asmbl_55329,asmbl_55330,asmbl_55331,asmbl_55332 scaffold_9 - retained_intron 11843908-11844161 asmbl_55333 // Retained and Spliced Intron # retained_intron 11851343-11852018 (orient:-) max_ev_support = 1 # spliced_intron 11851343-11852018 (orient:-) max_ev_support = 2 scaffold_9 - intron 11851343-11852018 asmbl_55334 scaffold_9 - retained_intron 11851343-11852018 asmbl_55337 // Exon Skipping and Retention # skipped_exon 12066703-12069664 (orient:-) max_ev_support = 1 # retained_exon 12067597-12067667 (orient:-) max_ev_support = 1 scaffold_9 - retained_exons 12067597-12067667 asmbl_55350 scaffold_9 - intron_skips_exon 12066703-12069664 asmbl_55349 // Retained and Spliced Intron # retained_intron 12073542-12074636 (orient:-) max_ev_support = 3 # spliced_intron 12073542-12074636 (orient:-) max_ev_support = 3 scaffold_9 - intron 12073542-12074636 asmbl_55351 scaffold_9 - retained_intron 12073542-12074636 asmbl_55352 // Retained and Spliced Intron # retained_intron 12272920-12273070 (orient:-) max_ev_support = 1 # spliced_intron 12272920-12273070 (orient:-) max_ev_support = 2 scaffold_9 - intron 12272920-12273070 asmbl_55365 scaffold_9 - retained_intron 12272920-12273070 asmbl_55366 // Retained and Spliced Intron # retained_intron 13297144-13297188 (orient:-) max_ev_support = 1 # spliced_intron 13297144-13297188 (orient:-) max_ev_support = 1 scaffold_9 - intron 13297144-13297188 asmbl_55423,asmbl_55424 scaffold_9 - retained_intron 13297144-13297188 asmbl_55420 // Retained and Spliced Intron # retained_intron 13297182-13297316 (orient:-) max_ev_support = 1 # spliced_intron 13297182-13297316 (orient:-) max_ev_support = 1 scaffold_9 - intron 13297182-13297316 asmbl_55422 scaffold_9 - retained_intron 13297182-13297316 asmbl_55420 // Retained and Spliced Intron # retained_intron 13297189-13297278 (orient:-) max_ev_support = 1 # spliced_intron 13297189-13297278 (orient:-) max_ev_support = 1 scaffold_9 - intron 13297189-13297278 asmbl_55421 scaffold_9 - retained_intron 13297189-13297278 asmbl_55420 // Retained and Spliced Intron # retained_intron 13304979-13305210 (orient:-) max_ev_support = 4 # spliced_intron 13304979-13305210 (orient:-) max_ev_support = 2 scaffold_9 - intron 13304979-13305210 asmbl_55428,asmbl_55430,asmbl_55431 scaffold_9 - retained_intron 13304979-13305210 asmbl_55427 // Retained and Spliced Intron # retained_intron 13319452-13319594 (orient:-) max_ev_support = 2 # spliced_intron 13319452-13319594 (orient:-) max_ev_support = 2 scaffold_9 - intron 13319452-13319594 asmbl_55439 scaffold_9 - retained_intron 13319452-13319594 asmbl_55438 // Retained and Spliced Intron # retained_intron 13323052-13323206 (orient:-) max_ev_support = 3 # spliced_intron 13323052-13323206 (orient:-) max_ev_support = 2 scaffold_9 - intron 13323052-13323206 asmbl_55441 scaffold_9 - retained_intron 13323052-13323206 asmbl_55440 // Retained and Spliced Intron # retained_intron 13368752-13368963 (orient:-) max_ev_support = 2 # spliced_intron 13368752-13368963 (orient:-) max_ev_support = 2 scaffold_9 - intron 13368752-13368963 asmbl_55443 scaffold_9 - retained_intron 13368752-13368963 asmbl_55444 // Exon Skipping and Retention # skipped_exon 14315617-14316311 (orient:-) max_ev_support = 1 # retained_exon 14315898-14315991 (orient:-) max_ev_support = 1 scaffold_9 - retained_exons 14315898-14315991 asmbl_55478 scaffold_9 - intron_skips_exon 14315617-14316311 asmbl_55477 // Retained and Spliced Intron # retained_intron 14817657-14817753 (orient:-) max_ev_support = 2 # spliced_intron 14817657-14817753 (orient:-) max_ev_support = 2 scaffold_9 - intron 14817657-14817753 asmbl_55496,asmbl_55503 scaffold_9 - retained_intron 14817657-14817753 asmbl_55495,asmbl_55502,asmbl_55504 // Retained and Spliced Intron # retained_intron 14817657-14817774 (orient:-) max_ev_support = 2 # spliced_intron 14817657-14817774 (orient:-) max_ev_support = 2 scaffold_9 - intron 14817657-14817774 asmbl_55497,asmbl_55499 scaffold_9 - retained_intron 14817657-14817774 asmbl_55495,asmbl_55502,asmbl_55504 // Retained and Spliced Intron # retained_intron 14817657-14818073 (orient:-) max_ev_support = 2 # spliced_intron 14817657-14818073 (orient:-) max_ev_support = 2 scaffold_9 - intron 14817657-14818073 asmbl_55498 scaffold_9 - retained_intron 14817657-14818073 asmbl_55495,asmbl_55502,asmbl_55504 // Retained and Spliced Intron # retained_intron 14817894-14818073 (orient:-) max_ev_support = 2 # spliced_intron 14817894-14818073 (orient:-) max_ev_support = 1 scaffold_9 - intron 14817894-14818073 asmbl_55499 scaffold_9 - retained_intron 14817894-14818073 asmbl_55495,asmbl_55496,asmbl_55497,asmbl_55502,asmbl_55503,asmbl_55504 // Exon Skipping and Retention # skipped_exon 14817657-14818073 (orient:-) max_ev_support = 2 # retained_exon 14817775-14817893 (orient:-) max_ev_support = 1 scaffold_9 - retained_exons 14817775-14817893 asmbl_55499 scaffold_9 - intron_skips_exon 14817657-14818073 asmbl_55498 // Retained and Spliced Intron # retained_intron 14818996-14819580 (orient:-) max_ev_support = 1 # spliced_intron 14818996-14819580 (orient:-) max_ev_support = 3 scaffold_9 - intron 14818996-14819580 asmbl_55494,asmbl_55504 scaffold_9 - retained_intron 14818996-14819580 asmbl_55500,asmbl_55501 // Retained and Spliced Intron # retained_intron 14818996-14819592 (orient:-) max_ev_support = 1 # spliced_intron 14818996-14819592 (orient:-) max_ev_support = 2 scaffold_9 - intron 14818996-14819592 asmbl_55498,asmbl_55502 scaffold_9 - retained_intron 14818996-14819592 asmbl_55500,asmbl_55501 // Exon Skipping and Retention # skipped_exon 15221769-15223286 (orient:-) max_ev_support = 2 # retained_exon 15221955-15222080 (orient:-) max_ev_support = 2 scaffold_9 - retained_exons 15221955-15222080 asmbl_55512,asmbl_55513 scaffold_9 - intron_skips_exon 15221769-15223286 asmbl_55511 // Exon Skipping and Retention # skipped_exon 15495374-15496423 (orient:-) max_ev_support = 2 # retained_exon 15495475-15495510 (orient:-) max_ev_support = 2 scaffold_9 - retained_exons 15495475-15495510 asmbl_55530 scaffold_9 - intron_skips_exon 15495374-15496423 asmbl_55531 // Retained and Spliced Intron # retained_intron 15495374-15495474 (orient:-) max_ev_support = 2 # spliced_intron 15495374-15495474 (orient:-) max_ev_support = 2 scaffold_9 - intron 15495374-15495474 asmbl_55530,asmbl_55532 scaffold_9 - retained_intron 15495374-15495474 asmbl_55533 // Exon Skipping and Retention # skipped_exon 16282211-16284224 (orient:-) max_ev_support = 2 # retained_exon 16282311-16282358 (orient:-) max_ev_support = 2 scaffold_9 - retained_exons 16282311-16282358 asmbl_55564 scaffold_9 - intron_skips_exon 16282211-16284224 asmbl_55565 // Retained and Spliced Intron # retained_intron 16282211-16282310 (orient:-) max_ev_support = 1 # spliced_intron 16282211-16282310 (orient:-) max_ev_support = 2 scaffold_9 - intron 16282211-16282310 asmbl_55564 scaffold_9 - retained_intron 16282211-16282310 asmbl_55566 // Exon Skipping and Retention # skipped_exon 16346615-16347997 (orient:-) max_ev_support = 1 # retained_exon 16346812-16347045 (orient:-) max_ev_support = 2 scaffold_9 - retained_exons 16346812-16346885,16346978-16347045 asmbl_55567 scaffold_9 - intron_skips_exon 16346615-16347997 asmbl_55568 // Retained and Spliced Intron # retained_intron 16558842-16561320 (orient:-) max_ev_support = 5 # spliced_intron 16558842-16561320 (orient:-) max_ev_support = 2 scaffold_9 - intron 16558842-16561320 asmbl_55584,asmbl_55585,asmbl_55586,asmbl_55590,asmbl_55591 scaffold_9 - retained_intron 16558842-16561320 asmbl_55580,asmbl_55581 // Retained and Spliced Intron # retained_intron 16559310-16560403 (orient:-) max_ev_support = 5 # spliced_intron 16559310-16560403 (orient:-) max_ev_support = 1 scaffold_9 - intron 16559310-16560403 asmbl_55583 scaffold_9 - retained_intron 16559310-16560403 asmbl_55580,asmbl_55581,asmbl_55582 // Retained and Spliced Intron # retained_intron 16560431-16561320 (orient:-) max_ev_support = 3 # spliced_intron 16560431-16561320 (orient:-) max_ev_support = 1 scaffold_9 - intron 16560431-16561320 asmbl_55582,asmbl_55583 scaffold_9 - retained_intron 16560431-16561320 asmbl_55580,asmbl_55581 // Retained and Spliced Intron # retained_intron 16561348-16562614 (orient:-) max_ev_support = 3 # spliced_intron 16561348-16562614 (orient:-) max_ev_support = 2 scaffold_9 - intron 16561348-16562614 asmbl_55581,asmbl_55582,asmbl_55584,asmbl_55590,asmbl_55591 scaffold_9 - retained_intron 16561348-16562614 asmbl_55580 // Retained and Spliced Intron # retained_intron 16561348-16563669 (orient:-) max_ev_support = 3 # spliced_intron 16561348-16563669 (orient:-) max_ev_support = 3 scaffold_9 - intron 16561348-16563669 asmbl_55583,asmbl_55585,asmbl_55586 scaffold_9 - retained_intron 16561348-16563669 asmbl_55580 // Retained and Spliced Intron # retained_intron 16562642-16563669 (orient:-) max_ev_support = 1 # spliced_intron 16562642-16563669 (orient:-) max_ev_support = 3 scaffold_9 - intron 16562642-16563669 asmbl_55581,asmbl_55582,asmbl_55584,asmbl_55590,asmbl_55591 scaffold_9 - retained_intron 16562642-16563669 asmbl_55580 // Retained and Spliced Intron # retained_intron 16563697-16563787 (orient:-) max_ev_support = 1 # spliced_intron 16563697-16563787 (orient:-) max_ev_support = 3 scaffold_9 - intron 16563697-16563787 asmbl_55581,asmbl_55582,asmbl_55583,asmbl_55584,asmbl_55585,asmbl_55586,asmbl_55589,asmbl_55590,asmbl_55591 scaffold_9 - retained_intron 16563697-16563787 asmbl_55580 // Exon Skipping and Retention # skipped_exon 16563815-16566225 (orient:-) max_ev_support = 3 # retained_exon 16564428-16565837 (orient:-) max_ev_support = 3 scaffold_9 - retained_exons 16564428-16564754,16565760-16565837 asmbl_55580,asmbl_55581,asmbl_55582,asmbl_55583 scaffold_9 - intron_skips_exon 16563815-16566225 asmbl_55584,asmbl_55585,asmbl_55586,asmbl_55591 // Exon Skipping and Retention # skipped_exon 16564755-16566225 (orient:-) max_ev_support = 2 # retained_exon 16565760-16565837 (orient:-) max_ev_support = 3 scaffold_9 - retained_exons 16565760-16565837 asmbl_55580,asmbl_55581,asmbl_55582,asmbl_55583,asmbl_55588 scaffold_9 - intron_skips_exon 16564755-16566225 asmbl_55587 // Exon Skipping and Retention # skipped_exon 16561348-16563669 (orient:-) max_ev_support = 2 # retained_exon 16562615-16562641 (orient:-) max_ev_support = 2 scaffold_9 - retained_exons 16562615-16562641 asmbl_55581,asmbl_55582,asmbl_55584,asmbl_55590,asmbl_55591 scaffold_9 - intron_skips_exon 16561348-16563669 asmbl_55583,asmbl_55585,asmbl_55586 // Exon Skipping and Retention # skipped_exon 16558842-16561320 (orient:-) max_ev_support = 2 # retained_exon 16560404-16560430 (orient:-) max_ev_support = 1 scaffold_9 - retained_exons 16560404-16560430 asmbl_55583 scaffold_9 - intron_skips_exon 16558842-16561320 asmbl_55584,asmbl_55585,asmbl_55586,asmbl_55590,asmbl_55591 // Retained and Spliced Intron # retained_intron 16628131-16628261 (orient:-) max_ev_support = 2 # spliced_intron 16628131-16628261 (orient:-) max_ev_support = 1 scaffold_9 - intron 16628131-16628261 asmbl_55599,asmbl_55600 scaffold_9 - retained_intron 16628131-16628261 asmbl_55597,asmbl_55598 // Retained and Spliced Intron # retained_intron 16654233-16654417 (orient:-) max_ev_support = 2 # spliced_intron 16654233-16654417 (orient:-) max_ev_support = 2 scaffold_9 - intron 16654233-16654417 asmbl_55603,asmbl_55604,asmbl_55605,asmbl_55606 scaffold_9 - retained_intron 16654233-16654417 asmbl_55602 // Retained and Spliced Intron # retained_intron 16656777-16657454 (orient:-) max_ev_support = 1 # spliced_intron 16656777-16657454 (orient:-) max_ev_support = 2 scaffold_9 - intron 16656777-16657454 asmbl_55603 scaffold_9 - retained_intron 16656777-16657454 asmbl_55604,asmbl_55605 // Retained and Spliced Intron # retained_intron 16656048-16656688 (orient:-) max_ev_support = 1 # spliced_intron 16656048-16656688 (orient:-) max_ev_support = 2 scaffold_9 - intron 16656048-16656688 asmbl_55603,asmbl_55604,asmbl_55605 scaffold_9 - retained_intron 16656048-16656688 asmbl_55606 // Retained and Spliced Intron # retained_intron 16664696-16664923 (orient:-) max_ev_support = 1 # spliced_intron 16664696-16664923 (orient:-) max_ev_support = 2 scaffold_9 - intron 16664696-16664923 asmbl_55609 scaffold_9 - retained_intron 16664696-16664923 asmbl_55610 // Retained and Spliced Intron # retained_intron 16664696-16665148 (orient:-) max_ev_support = 1 # spliced_intron 16664696-16665148 (orient:-) max_ev_support = 2 scaffold_9 - intron 16664696-16665148 asmbl_55608 scaffold_9 - retained_intron 16664696-16665148 asmbl_55610 // Exon Skipping and Retention # skipped_exon 16687742-16690662 (orient:-) max_ev_support = 1 # retained_exon 16689720-16689740 (orient:-) max_ev_support = 2 scaffold_9 - retained_exons 16689720-16689740 asmbl_55613 scaffold_9 - intron_skips_exon 16687742-16690662 asmbl_55615 // Exon Skipping and Retention # skipped_exon 16708338-16709158 (orient:-) max_ev_support = 1 # retained_exon 16708929-16708985 (orient:-) max_ev_support = 2 scaffold_9 - retained_exons 16708929-16708985 asmbl_55617,asmbl_55618 scaffold_9 - intron_skips_exon 16708338-16709158 asmbl_55619 // Retained and Spliced Intron # retained_intron 16738714-16738866 (orient:-) max_ev_support = 2 # spliced_intron 16738714-16738866 (orient:-) max_ev_support = 3 scaffold_9 - intron 16738714-16738866 asmbl_55621,asmbl_55624 scaffold_9 - retained_intron 16738714-16738866 asmbl_55622,asmbl_55623 // Retained and Spliced Intron # retained_intron 16738922-16739205 (orient:-) max_ev_support = 2 # spliced_intron 16738922-16739205 (orient:-) max_ev_support = 3 scaffold_9 - intron 16738922-16739205 asmbl_55621 scaffold_9 - retained_intron 16738922-16739205 asmbl_55622,asmbl_55623 // Retained and Spliced Intron # retained_intron 17456173-17456492 (orient:-) max_ev_support = 4 # spliced_intron 17456173-17456492 (orient:-) max_ev_support = 2 scaffold_9 - intron 17456173-17456492 asmbl_55643 scaffold_9 - retained_intron 17456173-17456492 asmbl_55642 // Retained and Spliced Intron # retained_intron 17469882-17470142 (orient:-) max_ev_support = 2 # spliced_intron 17469882-17470142 (orient:-) max_ev_support = 1 scaffold_9 - intron 17469882-17470142 asmbl_55649 scaffold_9 - retained_intron 17469882-17470142 asmbl_55647 // Retained and Spliced Intron # retained_intron 17469882-17470146 (orient:-) max_ev_support = 2 # spliced_intron 17469882-17470146 (orient:-) max_ev_support = 2 scaffold_9 - intron 17469882-17470146 asmbl_55646 scaffold_9 - retained_intron 17469882-17470146 asmbl_55647 // Exon Skipping and Retention # skipped_exon 17495937-17497232 (orient:-) max_ev_support = 3 # retained_exon 17496036-17496107 (orient:-) max_ev_support = 3 scaffold_9 - retained_exons 17496036-17496107 asmbl_55653 scaffold_9 - intron_skips_exon 17495937-17497232 asmbl_55654 // Retained and Spliced Intron # retained_intron 17548809-17549033 (orient:-) max_ev_support = 3 # spliced_intron 17548809-17549033 (orient:-) max_ev_support = 1 scaffold_9 - intron 17548809-17549033 asmbl_55656 scaffold_9 - retained_intron 17548809-17549033 asmbl_55655 // Retained and Spliced Intron # retained_intron 17610765-17610884 (orient:-) max_ev_support = 3 # spliced_intron 17610765-17610884 (orient:-) max_ev_support = 3 scaffold_9 - intron 17610765-17610884 asmbl_55660,asmbl_55662 scaffold_9 - retained_intron 17610765-17610884 asmbl_55659,asmbl_55661,asmbl_55666 // Exon Skipping and Retention # skipped_exon 17659157-17660769 (orient:-) max_ev_support = 3 # retained_exon 17659940-17659977 (orient:-) max_ev_support = 3 scaffold_9 - retained_exons 17659940-17659977 asmbl_55668,asmbl_55670 scaffold_9 - intron_skips_exon 17659157-17660769 asmbl_55669 // Retained and Spliced Intron # retained_intron 17658989-17659123 (orient:-) max_ev_support = 3 # spliced_intron 17658989-17659123 (orient:-) max_ev_support = 3 scaffold_9 - intron 17658989-17659123 asmbl_55668 scaffold_9 - retained_intron 17658989-17659123 asmbl_55669,asmbl_55670 // Retained and Spliced Intron # retained_intron 17790249-17790655 (orient:-) max_ev_support = 2 # spliced_intron 17790249-17790655 (orient:-) max_ev_support = 3 scaffold_9 - intron 17790249-17790655 asmbl_55681 scaffold_9 - retained_intron 17790249-17790655 asmbl_55680,asmbl_55682,asmbl_55683 // Exon Skipping and Retention # skipped_exon 18355765-18356507 (orient:-) max_ev_support = 2 # retained_exon 18355949-18356027 (orient:-) max_ev_support = 2 scaffold_9 - retained_exons 18355949-18356027 asmbl_55699 scaffold_9 - intron_skips_exon 18355765-18356507 asmbl_55698 // Retained and Spliced Intron # retained_intron 7919-8075 (orient:+) max_ev_support = 1 # spliced_intron 7919-8075 (orient:+) max_ev_support = 2 scaffold_92 + intron 7919-8075 asmbl_55828 scaffold_92 + retained_intron 7919-8075 asmbl_55829