-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_999

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 590, 687
Couldn't classify 2908, 3237
Sorry, prediction snap_scaffold_999-snap.1-T1 fails validation.
(CCT)	 AG	590-687	GT	AGG
(AGG)	 AG	888-946	GT	TAG
(GTG)	 AG	1495-1653	GT	GAG
(ATT)	 AG	2338-2511	GT	TGG
(ATA)	 AG	2908-3237	GT	AGG
-recovered snap_scaffold_999-snap.1-T1, internal, 590, 687
-recovered snap_scaffold_999-snap.1-T1, internal, 888, 946
-recovered snap_scaffold_999-snap.1-T1, internal, 1495, 1653
-recovered snap_scaffold_999-snap.1-T1, internal, 2338, 2511
-recovered snap_scaffold_999-snap.1-T1, internal, 2908, 3237
Couldn't classify 590, 670
Sorry, prediction GlimmerHMM_glimmerT_60897-T1 fails validation.
(CCT)	 AG	590-670	GT	ACG
(GAC)	 AG	1503-1653	GT	GAG
(AGT)	 AG	2066-2275	GT	GAG
(ATA)	 AG	2908-3242	TG	AGT
-recovered GlimmerHMM_glimmerT_60897-T1, terminal, 2908, 3242
-recovered GlimmerHMM_glimmerT_60897-T1, internal, 590, 670
-recovered GlimmerHMM_glimmerT_60897-T1, internal, 1503, 1653
-recovered GlimmerHMM_glimmerT_60897-T1, internal, 2066, 2275
Couldn't classify 3569, 3630
Sorry, prediction Augustus_model.g40303.t1 fails validation.
(ATG)	 AG	642-687	GT	AGG
(GTG)	 AG	1495-1653	GT	GAG
(ATT)	 AG	2338-2511	GT	TGG
(ATA)	 AG	2908-3237	GT	AGG
(CCA)	 AG	3569-3630		CC
-recovered Augustus_model.g40303.t1, initial, 642, 687
-recovered Augustus_model.g40303.t1, internal, 642, 687
-recovered Augustus_model.g40303.t1, internal, 1495, 1653
-recovered Augustus_model.g40303.t1, internal, 2338, 2511
-recovered Augustus_model.g40303.t1, internal, 2908, 3237

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3630
-exon list size: 18


building trellis

5.0    
10.0    
15.0    
20.0    
25.0    
30.0    
35.0    
40.0    
45.0    
50.0    
55.0    
60.0    
65.0    
70.0    
75.0    
80.0    
85.0    
90.0    
95.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support