-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_998

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 694, 757
Couldn't classify 3301, 3478
Sorry, prediction snap_scaffold_998-snap.2-T1 fails validation.
(GAC)	 AG	694-757	GT	AAG
(GCC)	 AG	3301-3478	GT	AGG
-recovered snap_scaffold_998-snap.2-T1, internal, 694, 757
-recovered snap_scaffold_998-snap.2-T1, internal, 3301, 3478

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 81, 357
Sorry, prediction snap_scaffold_998-snap.1-T1 fails validation.
(ACT)	 AG	81-357	GT	CGG
(CCT)	 AG	484-561	GT	TGG
(GTC)	 AG	2936-3040	TG	GAT
-recovered snap_scaffold_998-snap.1-T1, terminal, 2936, 3040
-recovered snap_scaffold_998-snap.1-T1, internal, 81, 357
-recovered snap_scaffold_998-snap.1-T1, internal, 484, 561
Couldn't classify 82, 357
Couldn't classify 484, 561
Sorry, prediction pasa_asmbl_55859.p1 fails validation.
(CTG)	 GA	82-357	GT	CGG
(CCT)	 AG	484-561	GT	TGG
-recovered pasa_asmbl_55859.p1, internal, 484, 561
Couldn't classify 81, 357
Sorry, prediction Augustus_model.g40302.t1 fails validation.
(ACT)	 AG	81-357	GT	CGG
(CCT)	 AG	484-561	GT	TGG
(GTC)	 AG	2936-3040	TG	GAT
-recovered Augustus_model.g40302.t1, terminal, 2936, 3040
-recovered Augustus_model.g40302.t1, internal, 81, 357
-recovered Augustus_model.g40302.t1, internal, 484, 561
Couldn't classify 100, 357
Sorry, prediction GlimmerHMM_glimmerT_60896-T1 fails validation.
(CTG)	 AG	100-357	GT	CGG
(CCT)	 AG	484-561	GT	TGG
(GTC)	 AG	2936-3040	TG	GAT
-recovered GlimmerHMM_glimmerT_60896-T1, terminal, 2936, 3040
-recovered GlimmerHMM_glimmerT_60896-T1, internal, 100, 357
-recovered GlimmerHMM_glimmerT_60896-T1, internal, 484, 561

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3551, rend_intergenic: 694  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 3631
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 3551, rend_intergenic: 694  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support