-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_992

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 245, 298
Couldn't classify 3516, 3601
Sorry, prediction snap_scaffold_992-snap.2-T1 fails validation.
(CCA)	 AG	245-298	GT	TGG
(CTG)	 AG	435-589	GT	AGG
(CGA)	 AG	689-965	GT	AGG
(TCT)	 AG	2478-2517	GT	AGG
(CTC)	 AG	3516-3601	GT	GGG
-recovered snap_scaffold_992-snap.2-T1, internal, 245, 298
-recovered snap_scaffold_992-snap.2-T1, internal, 435, 589
-recovered snap_scaffold_992-snap.2-T1, internal, 689, 965
-recovered snap_scaffold_992-snap.2-T1, internal, 2478, 2517
-recovered snap_scaffold_992-snap.2-T1, internal, 3516, 3601

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_60892-T1
Couldn't classify 3511, 3582
Sorry, prediction Augustus_model.g40299.t1 fails validation.
(ATG)	 TG	65-173	GT	AGG
(GAA)	 AG	2518-2556	GT	AGG
(CTA)	 AG	3225-3389	GT	AGG
(GGT)	 AG	3511-3582	GT	AGG
-recovered Augustus_model.g40299.t1, initial, 65, 173
-recovered Augustus_model.g40299.t1, internal, 2518, 2556
-recovered Augustus_model.g40299.t1, internal, 3225, 3389
-recovered Augustus_model.g40299.t1, internal, 3511, 3582
Couldn't classify 54, 173
Couldn't classify 3511, 3582
Sorry, prediction snap_scaffold_992-snap.1-T1 fails validation.
(GCA)	 AG	54-173	GT	AGG
(GAA)	 AG	2518-2556	GT	AGG
(CTA)	 AG	3225-3389	GT	AGG
(GGT)	 AG	3511-3582	GT	AGG
-recovered snap_scaffold_992-snap.1-T1, internal, 54, 173
-recovered snap_scaffold_992-snap.1-T1, internal, 2518, 2556
-recovered snap_scaffold_992-snap.1-T1, internal, 3225, 3389
-recovered snap_scaffold_992-snap.1-T1, internal, 3511, 3582

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3605, rend_intergenic: 245  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 3658
-exon list size: 19


building trellis

4.8    
9.5    
14.3    
19.0    
23.8    
28.6    
33.3    
38.1    
42.9    
47.6    
52.4    
57.1    
61.9    
66.7    
71.4    
76.2    
81.0    
85.7    
90.5    
95.2    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 3605, rend_intergenic: 245  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support