-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_985

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 327, 446
Couldn't classify 2976, 3131
Sorry, prediction snap_scaffold_985-snap.1-T1 fails validation.
(GTT)	 AG	327-446	GT	AGG
(ACG)	 AG	523-606	GT	GGG
(CCC)	 AG	1128-1179	GT	TTG
(TTG)	 AG	2976-3131	GT	CGG
-recovered snap_scaffold_985-snap.1-T1, internal, 327, 446
-recovered snap_scaffold_985-snap.1-T1, internal, 523, 606
-recovered snap_scaffold_985-snap.1-T1, internal, 1128, 1179
-recovered snap_scaffold_985-snap.1-T1, internal, 2976, 3131

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 588, 728
Couldn't classify 3141, 3453
Sorry, prediction Augustus_model.g40297.t1 fails validation.
(GAC)	 AG	588-728	GT	ACG
(AGG)	 AG	1625-1779	GT	CCG
(ACC)	 AG	2258-2348	GT	AGG
(AAG)	 AG	3141-3453	GT	TGG
-recovered Augustus_model.g40297.t1, internal, 588, 728
-recovered Augustus_model.g40297.t1, internal, 1625, 1779
-recovered Augustus_model.g40297.t1, internal, 2258, 2348
-recovered Augustus_model.g40297.t1, internal, 3141, 3453
Couldn't classify 588, 728
Sorry, prediction GlimmerHMM_glimmerT_60888-T1 fails validation.
(GAC)	 AG	588-728	GT	ACG
(AGG)	 AG	1625-1820	GT	CTG
(CCC)	 AG	3109-3479	TT	AAT
-recovered GlimmerHMM_glimmerT_60888-T1, terminal, 3109, 3479
-recovered GlimmerHMM_glimmerT_60888-T1, internal, 588, 728
-recovered GlimmerHMM_glimmerT_60888-T1, internal, 1625, 1820

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3694
-exon list size: 17


building trellis

5.3    
10.5    
15.8    
21.1    
26.3    
31.6    
36.8    
42.1    
47.4    
52.6    
57.9    
63.2    
68.4    
73.7    
78.9    
84.2    
89.5    
94.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support