-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_982

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1162, 1302
Couldn't classify 3510, 3634
Sorry, prediction snap_scaffold_982-snap.2-T1 fails validation.
(ATC)	 AG	1162-1302	GT	CAG
(GGC)	 AG	3510-3634	GT	GAG
-recovered snap_scaffold_982-snap.2-T1, internal, 1162, 1302
-recovered snap_scaffold_982-snap.2-T1, internal, 3510, 3634
Valid prediction for Augustus_model.g40294.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_60884-T1
Couldn't classify 144, 296
Couldn't classify 3307, 3421
Sorry, prediction snap_scaffold_982-snap.1-T1 fails validation.
(ACG)	 AG	144-296	GT	AGG
(GAA)	 AG	2008-2110	GT	AGG
(GCT)	 AG	2201-2254	GT	CGG
(ACG)	 AG	3307-3421	GT	GGG
-recovered snap_scaffold_982-snap.1-T1, internal, 144, 296
-recovered snap_scaffold_982-snap.1-T1, internal, 2008, 2110
-recovered snap_scaffold_982-snap.1-T1, internal, 2201, 2254
-recovered snap_scaffold_982-snap.1-T1, internal, 3307, 3421

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3559, rend_intergenic: 1162  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 3702
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 3559, rend_intergenic: 1162  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support