-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_981

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_60883-T1
Couldn't classify 674, 884
Sorry, prediction snap_scaffold_981-snap.2-T1 fails validation.
(AGA)	 AG	674-884	GT	GGG
(GCA)	 AG	1493-1526	GT	CGG
(AAA)	 AG	2611-2745	CG	GAC
-recovered snap_scaffold_981-snap.2-T1, terminal, 2611, 2745
-recovered snap_scaffold_981-snap.2-T1, internal, 674, 884
-recovered snap_scaffold_981-snap.2-T1, internal, 1493, 1526

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 234, 355
Sorry, prediction snap_scaffold_981-snap.1-T1 fails validation.
(GCT)	 AG	234-355	GT	GGG
(GGT)	 AG	1155-1320	GT	AGG
(CCA)	 AG	3138-3276	AA	AAA
-recovered snap_scaffold_981-snap.1-T1, terminal, 3138, 3276
-recovered snap_scaffold_981-snap.1-T1, internal, 234, 355
-recovered snap_scaffold_981-snap.1-T1, internal, 1155, 1320

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3477, rend_intergenic: 674  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 3710
-exon list size: 11


building trellis

7.7    
15.4    
23.1    
30.8    
38.5    
46.2    
53.8    
61.5    
69.2    
76.9    
84.6    
92.3    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 3477, rend_intergenic: 674  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support