-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_980

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_60881-T1
Valid prediction for snap_scaffold_980-snap.2-T1
Valid prediction for snap_scaffold_980-snap.1-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 2856, 2911
Sorry, prediction snap_scaffold_980-snap.3-T1 fails validation.
(ATG)	 AG	1167-1418	GT	GTG
(TCG)	 AG	1798-1921	GT	AGG
(TCG)	 AG	2856-2911	GT	CTG
-recovered snap_scaffold_980-snap.3-T1, initial, 1167, 1418
-recovered snap_scaffold_980-snap.3-T1, internal, 1167, 1418
-recovered snap_scaffold_980-snap.3-T1, internal, 1798, 1921
-recovered snap_scaffold_980-snap.3-T1, internal, 2856, 2911
Valid prediction for GlimmerHMM_glimmerT_60882-T1
add_exon() Sorry, GlimmerHMM_glimmerT_60882-T1 2487-2697-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 1662, rend_intergenic: 806  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 3716
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 1662, rend_intergenic: 806  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support