-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_98

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 109, 310
Sorry, prediction snap_scaffold_98-snap.2-T1 fails validation.
(CTC)	 AG	109-310	GT	AGG
(GAG)	 AG	604-792	GT	AGG
(ACT)	 AG	1246-1734	AG	GAA
-recovered snap_scaffold_98-snap.2-T1, terminal, 1246, 1734
-recovered snap_scaffold_98-snap.2-T1, internal, 109, 310
-recovered snap_scaffold_98-snap.2-T1, internal, 604, 792
Couldn't classify 109, 310
Sorry, prediction Augustus_model.g39608.t1 fails validation.
(CTC)	 AG	109-310	GT	AGG
(GAG)	 AG	604-792	GT	AGG
(GCC)	 AG	1158-1379	AC	AGA
-recovered Augustus_model.g39608.t1, terminal, 1158, 1379
-recovered Augustus_model.g39608.t1, internal, 109, 310
-recovered Augustus_model.g39608.t1, internal, 604, 792
Valid prediction for GlimmerHMM_glimmerT_59777-T1
Valid prediction for GlimmerHMM_glimmerT_59775-T1
Couldn't classify 15777, 15899
Sorry, prediction snap_scaffold_98-snap.4-T1 fails validation.
(ATG)	 CG	12658-12852	GT	CAG
(TCG)	 AG	12907-13077	GT	CGG
(GTG)	 AG	13107-13236	GT	CTG
(CTT)	 AG	14249-14346	GT	GGG
(GGG)	 AG	15777-15899	GT	GCG
-recovered snap_scaffold_98-snap.4-T1, initial, 12658, 12852
-recovered snap_scaffold_98-snap.4-T1, internal, 12907, 13077
-recovered snap_scaffold_98-snap.4-T1, internal, 13107, 13236
-recovered snap_scaffold_98-snap.4-T1, internal, 14249, 14346
-recovered snap_scaffold_98-snap.4-T1, internal, 15777, 15899

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g39610.t1
Couldn't classify 15971, 16174
Sorry, prediction snap_scaffold_98-snap.1-T1 fails validation.
(ATG)	 TT	14264-14302	GT	CCG
(GGA)	 AG	14789-15172	GT	GGG
(CAC)	 AG	15453-15565	GT	AGG
(TTT)	 AG	15971-16174	GT	GGG
-recovered snap_scaffold_98-snap.1-T1, initial, 14264, 14302
-recovered snap_scaffold_98-snap.1-T1, internal, 14789, 15172
-recovered snap_scaffold_98-snap.1-T1, internal, 15453, 15565
-recovered snap_scaffold_98-snap.1-T1, internal, 15971, 16174
Valid prediction for GlimmerHMM_glimmerT_59776-T1
Valid prediction for snap_scaffold_98-snap.3-T1
Couldn't classify 314, 433
Sorry, prediction snap_scaffold_98-snap.5-T1 fails validation.
(CGT)	 AG	314-433	GT	CAG
(ACC)	 AG	1873-1992	GT	AGG
(AGC)	 AG	2523-2608	GT	AGG
(GCC)	 AG	2978-3093	GT	CAG
(AAT)	 AG	3108-3358	GT	AAG
(GGG)	 AG	3437-3472	CG	AAC
-recovered snap_scaffold_98-snap.5-T1, terminal, 3437, 3472
-recovered snap_scaffold_98-snap.5-T1, internal, 314, 433
-recovered snap_scaffold_98-snap.5-T1, internal, 1873, 1992
-recovered snap_scaffold_98-snap.5-T1, internal, 2523, 2608
-recovered snap_scaffold_98-snap.5-T1, internal, 2978, 3093
-recovered snap_scaffold_98-snap.5-T1, internal, 3108, 3358
Valid prediction for Augustus_model.g39609.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 1957, rend_intergenic: 109  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 15899, rend_intergenic: 12749  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 16220
-exon list size: 46


building trellis

2.1    
4.2    
6.2    
8.3    
10.4    
12.5    
14.6    
16.7    
18.8    
20.8    
22.9    
25.0    
27.1    
29.2    
31.2    
33.3    
35.4    
37.5    
39.6    
41.7    
43.8    
45.8    
47.9    
50.0    
52.1    
54.2    
56.2    
58.3    
60.4    
62.5    
64.6    
66.7    
68.8    
70.8    
72.9    
75.0    
77.1    
79.2    
81.2    
83.3    
85.4    
87.5    
89.6    
91.7    
93.8    
95.8    
97.9    
-found 4 predictions from path traversal
Error with prediction: snap lend_intergenic: 1957, rend_intergenic: 109  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 15899, rend_intergenic: 12749  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 3 predictions persist after filtering for low support