-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_973

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_973-snap.2-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 3201, 3434
Sorry, prediction Augustus_model.g40292.t1 fails validation.
(ATG)	 CA	1168-1183	GT	GGG
(GTA)	 AG	1889-1962	GT	AGG
(CGC)	 AG	3201-3434	GT	AGG
-recovered Augustus_model.g40292.t1, initial, 1168, 1183
-recovered Augustus_model.g40292.t1, internal, 1889, 1962
-recovered Augustus_model.g40292.t1, internal, 3201, 3434
Valid prediction for GlimmerHMM_glimmerT_60877-T1
Couldn't classify 290, 385
Couldn't classify 3201, 3434
Sorry, prediction snap_scaffold_973-snap.1-T1 fails validation.
(GGC)	 AG	290-385	GT	GGG
(GTA)	 AG	1889-1945	GT	CAG
(CGC)	 AG	3201-3434	GT	AGG
-recovered snap_scaffold_973-snap.1-T1, internal, 290, 385
-recovered snap_scaffold_973-snap.1-T1, internal, 1889, 1945
-recovered snap_scaffold_973-snap.1-T1, internal, 3201, 3434

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3469, rend_intergenic: 883  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 3758
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 3469, rend_intergenic: 883  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support