-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_972

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_972-snap.2-T1
add_exon() Sorry, snap_scaffold_972-snap.2-T1 1534-1654-initial-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1287, 1408
Couldn't classify 3135, 3288
Sorry, prediction snap_scaffold_972-snap.1-T1 fails validation.
(GAA)	 AG	1287-1408	GT	AGG
(GAA)	 AG	1839-2074	GT	AGG
(GAC)	 AG	2181-2428	GT	AGG
(AGA)	 AG	3135-3288	GT	AAG
-recovered snap_scaffold_972-snap.1-T1, internal, 1287, 1408
-recovered snap_scaffold_972-snap.1-T1, internal, 1839, 2074
-recovered snap_scaffold_972-snap.1-T1, internal, 2181, 2428
-recovered snap_scaffold_972-snap.1-T1, internal, 3135, 3288
Valid prediction for GlimmerHMM_glimmerT_60876-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2474, rend_intergenic: 1534  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 3760
-exon list size: 8


building trellis

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-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 2474, rend_intergenic: 1534  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support