-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_969 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Couldn't classify 3431, 3536 Sorry, prediction GlimmerHMM_glimmerT_60874-T1 fails validation. (ATG) GG 576-655 GT AGG (ATT) AG 852-1023 GT AGG (CAT) AG 2393-2467 GT AGG (ATC) AG 2596-2784 GT AGG (AGT) AG 2993-3125 GT GAG (AGC) AG 3431-3536 GT GGG -recovered GlimmerHMM_glimmerT_60874-T1, initial, 576, 655 -recovered GlimmerHMM_glimmerT_60874-T1, internal, 852, 1023 -recovered GlimmerHMM_glimmerT_60874-T1, internal, 2393, 2467 -recovered GlimmerHMM_glimmerT_60874-T1, internal, 2596, 2784 -recovered GlimmerHMM_glimmerT_60874-T1, internal, 2993, 3125 -recovered GlimmerHMM_glimmerT_60874-T1, internal, 3431, 3536 Couldn't classify 561, 655 Couldn't classify 3679, 3736 Sorry, prediction snap_scaffold_969-snap.1-T1 fails validation. (CGC) AG 561-655 GT AGG (ATT) AG 852-1023 GT AGG (GAG) AG 2142-2192 GT TGG (CAT) AG 2393-2467 GT AGG (ATC) AG 2596-2784 GT AGG (AGT) AG 2993-3125 GT GAG (AGC) AG 3431-3536 GT GGG (GAG) AG 3679-3736 GT AGG -recovered snap_scaffold_969-snap.1-T1, internal, 561, 655 -recovered snap_scaffold_969-snap.1-T1, internal, 852, 1023 -recovered snap_scaffold_969-snap.1-T1, internal, 2142, 2192 -recovered snap_scaffold_969-snap.1-T1, internal, 2393, 2467 -recovered snap_scaffold_969-snap.1-T1, internal, 2596, 2784 -recovered snap_scaffold_969-snap.1-T1, internal, 2993, 3125 -recovered snap_scaffold_969-snap.1-T1, internal, 3431, 3536 -recovered snap_scaffold_969-snap.1-T1, internal, 3679, 3736 Couldn't classify 2142, 2192 Couldn't classify 3679, 3736 Sorry, prediction pasa_asmbl_55855.p1 fails validation. (GAG) AG 2142-2192 GT TGG (CAT) AG 2393-2467 GT AGG (ATC) AG 2596-2784 GT AGG (AGT) AG 2993-3125 GT GAG (AGC) AG 3431-3536 GT GGG (GAG) AG 3679-3736 GT AGG -recovered pasa_asmbl_55855.p1, internal, 2142, 2192 -recovered pasa_asmbl_55855.p1, internal, 2393, 2467 -recovered pasa_asmbl_55855.p1, internal, 2596, 2784 -recovered pasa_asmbl_55855.p1, internal, 2993, 3125 -recovered pasa_asmbl_55855.p1, internal, 3431, 3536 -recovered pasa_asmbl_55855.p1, internal, 3679, 3736 Couldn't classify 3679, 3736 Sorry, prediction Augustus_model.g40291.t1 fails validation. (ATG) GG 576-655 GT AGG (ATT) AG 852-1023 GT AGG (GAG) AG 2142-2192 GT TGG (CAT) AG 2393-2467 GT AGG (ATC) AG 2596-2784 GT AGG (AGT) AG 2993-3125 GT GAG (AGC) AG 3431-3536 GT GGG (GAG) AG 3679-3736 GT AGG -recovered Augustus_model.g40291.t1, initial, 576, 655 -recovered Augustus_model.g40291.t1, internal, 852, 1023 -recovered Augustus_model.g40291.t1, internal, 2142, 2192 -recovered Augustus_model.g40291.t1, internal, 2393, 2467 -recovered Augustus_model.g40291.t1, internal, 2596, 2784 -recovered Augustus_model.g40291.t1, internal, 2993, 3125 -recovered Augustus_model.g40291.t1, internal, 3431, 3536 -recovered Augustus_model.g40291.t1, internal, 3679, 3736 Valid prediction for CodingQuarry_transcript_62498-T1 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -) -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -) -building DP trellis -building trellis in range 1 - 3770 -exon list size: 17 building trellis 5.3 10.5 15.8 21.1 26.3 31.6 36.8 42.1 47.4 52.6 57.9 63.2 68.4 73.7 78.9 84.2 89.5 94.7 -found 1 predictions from path traversal -reporting highest scoring path thru the trellis. -found 1 predictions persist after filtering for low support