-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_969

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 3431, 3536
Sorry, prediction GlimmerHMM_glimmerT_60874-T1 fails validation.
(ATG)	 GG	576-655	GT	AGG
(ATT)	 AG	852-1023	GT	AGG
(CAT)	 AG	2393-2467	GT	AGG
(ATC)	 AG	2596-2784	GT	AGG
(AGT)	 AG	2993-3125	GT	GAG
(AGC)	 AG	3431-3536	GT	GGG
-recovered GlimmerHMM_glimmerT_60874-T1, initial, 576, 655
-recovered GlimmerHMM_glimmerT_60874-T1, internal, 852, 1023
-recovered GlimmerHMM_glimmerT_60874-T1, internal, 2393, 2467
-recovered GlimmerHMM_glimmerT_60874-T1, internal, 2596, 2784
-recovered GlimmerHMM_glimmerT_60874-T1, internal, 2993, 3125
-recovered GlimmerHMM_glimmerT_60874-T1, internal, 3431, 3536
Couldn't classify 561, 655
Couldn't classify 3679, 3736
Sorry, prediction snap_scaffold_969-snap.1-T1 fails validation.
(CGC)	 AG	561-655	GT	AGG
(ATT)	 AG	852-1023	GT	AGG
(GAG)	 AG	2142-2192	GT	TGG
(CAT)	 AG	2393-2467	GT	AGG
(ATC)	 AG	2596-2784	GT	AGG
(AGT)	 AG	2993-3125	GT	GAG
(AGC)	 AG	3431-3536	GT	GGG
(GAG)	 AG	3679-3736	GT	AGG
-recovered snap_scaffold_969-snap.1-T1, internal, 561, 655
-recovered snap_scaffold_969-snap.1-T1, internal, 852, 1023
-recovered snap_scaffold_969-snap.1-T1, internal, 2142, 2192
-recovered snap_scaffold_969-snap.1-T1, internal, 2393, 2467
-recovered snap_scaffold_969-snap.1-T1, internal, 2596, 2784
-recovered snap_scaffold_969-snap.1-T1, internal, 2993, 3125
-recovered snap_scaffold_969-snap.1-T1, internal, 3431, 3536
-recovered snap_scaffold_969-snap.1-T1, internal, 3679, 3736
Couldn't classify 2142, 2192
Couldn't classify 3679, 3736
Sorry, prediction pasa_asmbl_55855.p1 fails validation.
(GAG)	 AG	2142-2192	GT	TGG
(CAT)	 AG	2393-2467	GT	AGG
(ATC)	 AG	2596-2784	GT	AGG
(AGT)	 AG	2993-3125	GT	GAG
(AGC)	 AG	3431-3536	GT	GGG
(GAG)	 AG	3679-3736	GT	AGG
-recovered pasa_asmbl_55855.p1, internal, 2142, 2192
-recovered pasa_asmbl_55855.p1, internal, 2393, 2467
-recovered pasa_asmbl_55855.p1, internal, 2596, 2784
-recovered pasa_asmbl_55855.p1, internal, 2993, 3125
-recovered pasa_asmbl_55855.p1, internal, 3431, 3536
-recovered pasa_asmbl_55855.p1, internal, 3679, 3736
Couldn't classify 3679, 3736
Sorry, prediction Augustus_model.g40291.t1 fails validation.
(ATG)	 GG	576-655	GT	AGG
(ATT)	 AG	852-1023	GT	AGG
(GAG)	 AG	2142-2192	GT	TGG
(CAT)	 AG	2393-2467	GT	AGG
(ATC)	 AG	2596-2784	GT	AGG
(AGT)	 AG	2993-3125	GT	GAG
(AGC)	 AG	3431-3536	GT	GGG
(GAG)	 AG	3679-3736	GT	AGG
-recovered Augustus_model.g40291.t1, initial, 576, 655
-recovered Augustus_model.g40291.t1, internal, 852, 1023
-recovered Augustus_model.g40291.t1, internal, 2142, 2192
-recovered Augustus_model.g40291.t1, internal, 2393, 2467
-recovered Augustus_model.g40291.t1, internal, 2596, 2784
-recovered Augustus_model.g40291.t1, internal, 2993, 3125
-recovered Augustus_model.g40291.t1, internal, 3431, 3536
-recovered Augustus_model.g40291.t1, internal, 3679, 3736
Valid prediction for CodingQuarry_transcript_62498-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3770
-exon list size: 17


building trellis

5.3    
10.5    
15.8    
21.1    
26.3    
31.6    
36.8    
42.1    
47.4    
52.6    
57.9    
63.2    
68.4    
73.7    
78.9    
84.2    
89.5    
94.7    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support