-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_965

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g40289.t1
Couldn't classify 410, 506
Sorry, prediction Augustus_model.g40290.t1 fails validation.
(AAT)	 AG	410-506	GT	TGG
(TGG)	 AG	616-711	GT	GGG
(GCA)	 AG	1047-1307	TT	GAT
-recovered Augustus_model.g40290.t1, terminal, 1047, 1307
-recovered Augustus_model.g40290.t1, internal, 410, 506
-recovered Augustus_model.g40290.t1, internal, 616, 711
Couldn't classify 616, 711
Sorry, prediction GlimmerHMM_glimmerT_60872-T1 fails validation.
(TGG)	 AG	616-711	GT	GGG
(GCA)	 AG	1047-1307	TT	GAT
-recovered GlimmerHMM_glimmerT_60872-T1, terminal, 1047, 1307
-recovered GlimmerHMM_glimmerT_60872-T1, internal, 616, 711
Valid prediction for GlimmerHMM_glimmerT_60871-T1
Valid prediction for snap_scaffold_965-snap.1-T1
Sorry, intron length (4) is less than minimum required (10)

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3778
-exon list size: 18


building trellis

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-found 2 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support