-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_964

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1784, 1925
Sorry, prediction GlimmerHMM_glimmerT_60870-T1 fails validation.
(ATG)	 AC	235-348	GT	CTG
(GGA)	 AG	1784-1925	GT	AGG
-recovered GlimmerHMM_glimmerT_60870-T1, initial, 235, 348
-recovered GlimmerHMM_glimmerT_60870-T1, internal, 1784, 1925
Valid prediction for Augustus_model.g40288.t1
Valid prediction for snap_scaffold_964-snap.1-T1
Valid prediction for snap_scaffold_964-snap.3-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_964-snap.2-T1
add_exon() Sorry, snap_scaffold_964-snap.2-T1 3051-3288-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 1284, rend_intergenic: 495  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 3782
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 1284, rend_intergenic: 495  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support