-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_96

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_96-snap.3-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_59772-T1
Valid prediction for Augustus_model.g39606.t1
Valid prediction for snap_scaffold_96-snap.2-T1
add_exon() Sorry, snap_scaffold_96-snap.2-T1 246-314-initial-1 is invalid.
add_exon() Sorry, snap_scaffold_96-snap.2-T1 2097-2192-internal-1 is invalid.
add_exon() Sorry, snap_scaffold_96-snap.2-T1 7943-8017-internal-1 is invalid.
add_exon() Sorry, snap_scaffold_96-snap.2-T1 8034-8101-internal-1 is invalid.
add_exon() Sorry, snap_scaffold_96-snap.2-T1 9268-9334-internal-3 is invalid.
add_exon() Sorry, snap_scaffold_96-snap.2-T1 9410-9924-terminal-1 is invalid.
Couldn't classify 15992, 16123
Sorry, prediction snap_scaffold_96-snap.1-T1 fails validation.
(ATG)	 AG	10117-10304	GT	AGG
(AAA)	 AG	10914-10978	GT	CAG
(GTG)	 AG	13513-13636	GT	AGG
(AAG)	 AG	15992-16123	GT	AGG
-recovered snap_scaffold_96-snap.1-T1, initial, 10117, 10304
-recovered snap_scaffold_96-snap.1-T1, internal, 10117, 10304
-recovered snap_scaffold_96-snap.1-T1, internal, 10914, 10978
-recovered snap_scaffold_96-snap.1-T1, internal, 13513, 13636
-recovered snap_scaffold_96-snap.1-T1, internal, 15992, 16123
Valid prediction for Augustus_model.g39607.t1
add_exon() Sorry, Augustus_model.g39607.t1 246-314-initial-1 is invalid.
add_exon() Sorry, Augustus_model.g39607.t1 1879-1967-terminal-1 is invalid.
Valid prediction for GlimmerHMM_glimmerT_59773-T1
add_exon() Sorry, GlimmerHMM_glimmerT_59773-T1 246-314-initial-1 is invalid.
add_exon() Sorry, GlimmerHMM_glimmerT_59773-T1 2097-2192-internal-1 is invalid.
add_exon() Sorry, GlimmerHMM_glimmerT_59773-T1 9410-9924-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 16267, rend_intergenic: 7932  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 16512
-exon list size: 17


building trellis

5.3    
10.5    
15.8    
21.1    
26.3    
31.6    
36.8    
42.1    
47.4    
52.6    
57.9    
63.2    
68.4    
73.7    
78.9    
84.2    
89.5    
94.7    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 16267, rend_intergenic: 7932  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support