-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_959

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 99, 212
Sorry, prediction Augustus_model.g40285.t1 fails validation.
(ACA)	 AG	99-212	GT	CGG
(GTC)	 AG	454-629	GG	GAG
-recovered Augustus_model.g40285.t1, terminal, 454, 629
-recovered Augustus_model.g40285.t1, internal, 99, 212
Valid prediction for GlimmerHMM_glimmerT_60866-T1
add_exon() Sorry, GlimmerHMM_glimmerT_60866-T1 419-629-terminal-1 is invalid.
Couldn't classify 2701, 3168
Sorry, prediction snap_scaffold_959-snap.2-T1 fails validation.
(ATG)	 CC	923-965	GT	GAG
(AGA)	 AG	2701-3168	GT	AGG
-recovered snap_scaffold_959-snap.2-T1, initial, 923, 965
-recovered snap_scaffold_959-snap.2-T1, internal, 2701, 3168

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1419, 1559
Sorry, prediction snap_scaffold_959-snap.1-T1 fails validation.
(ACG)	 AG	1419-1559	GT	AGG
(AAG)	 AG	1956-2061	GT	ATG
(AGC)	 AG	2930-3046	GT	ACG
(GGC)	 AG	3182-3275	TC	GAT
-recovered snap_scaffold_959-snap.1-T1, terminal, 3182, 3275
-recovered snap_scaffold_959-snap.1-T1, internal, 1419, 1559
-recovered snap_scaffold_959-snap.1-T1, internal, 1956, 2061
-recovered snap_scaffold_959-snap.1-T1, internal, 2930, 3046

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2377, rend_intergenic: 923  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 3795
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 2377, rend_intergenic: 923  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support