-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_958

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 323, 524
Sorry, prediction snap_scaffold_958-snap.1-T1 fails validation.
(GAG)	 AG	323-524	GT	GCG
(GGG)	 AG	678-850	TG	AAT
-recovered snap_scaffold_958-snap.1-T1, terminal, 678, 850
-recovered snap_scaffold_958-snap.1-T1, internal, 323, 524
Couldn't classify 323, 473
Sorry, prediction Augustus_model.g40284.t1 fails validation.
(GAG)	 AG	323-473	GT	ATG
(GGG)	 AG	678-850	TG	AAT
-recovered Augustus_model.g40284.t1, terminal, 678, 850
-recovered Augustus_model.g40284.t1, internal, 323, 473
Valid prediction for GlimmerHMM_glimmerT_60865-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3807
-exon list size: 4


building trellis

16.7    
33.3    
50.0    
66.7    
83.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support