-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_957

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1101, 1472
Sorry, prediction pasa_asmbl_55849.p1 fails validation.
(GTG)	 AG	1101-1472	GT	AGG
-recovered pasa_asmbl_55849.p1, internal, 1101, 1472
Valid prediction for snap_scaffold_957-snap.1-T1
Couldn't classify 3211, 3663
Sorry, prediction GlimmerHMM_glimmerT_60864-T1 fails validation.
(ATG)	 GC	876-1472	GT	AGG
(GTG)	 AG	3211-3663	GT	AGG
-recovered GlimmerHMM_glimmerT_60864-T1, initial, 876, 1472
-recovered GlimmerHMM_glimmerT_60864-T1, internal, 3211, 3663
Valid prediction for Augustus_model.g40283.t1
Couldn't classify 3211, 3663
Sorry, prediction snap_scaffold_957-snap.2-T1 fails validation.
(ATG)	 CC	2136-2217	GT	GGG
(GAA)	 AG	2608-2726	GT	GCG
(GTG)	 AG	3211-3663	GT	AGG
-recovered snap_scaffold_957-snap.2-T1, initial, 2136, 2217
-recovered snap_scaffold_957-snap.2-T1, internal, 2608, 2726
-recovered snap_scaffold_957-snap.2-T1, internal, 3211, 3663
Valid prediction for Augustus_model.g40282.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3811
-exon list size: 15


building trellis

5.9    
11.8    
17.6    
23.5    
29.4    
35.3    
41.2    
47.1    
52.9    
58.8    
64.7    
70.6    
76.5    
82.4    
88.2    
94.1    
-found 2 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support