-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_952

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 738, 837
Sorry, prediction snap_scaffold_952-snap.2-T1 fails validation.
(CCC)	 AG	738-837	GT	CTG
(AGA)	 AG	1054-1216	GT	AGG
(GTT)	 AG	3038-3330	CT	GAC
-recovered snap_scaffold_952-snap.2-T1, terminal, 3038, 3330
-recovered snap_scaffold_952-snap.2-T1, internal, 738, 837
-recovered snap_scaffold_952-snap.2-T1, internal, 1054, 1216
Valid prediction for GlimmerHMM_glimmerT_60858-T1
Couldn't classify 770, 837
Sorry, prediction Augustus_model.g40280.t1 fails validation.
(ACA)	 AG	770-837	GT	CTG
(AGA)	 AG	1054-1216	GT	AGG
(GTT)	 AG	3038-3330	CT	GAC
-recovered Augustus_model.g40280.t1, terminal, 3038, 3330
-recovered Augustus_model.g40280.t1, internal, 770, 837
-recovered Augustus_model.g40280.t1, internal, 1054, 1216
Valid prediction for GlimmerHMM_glimmerT_60859-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_952-snap.3-T1
Valid prediction for snap_scaffold_952-snap.1-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3330, rend_intergenic: 1021  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 3836
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 3330, rend_intergenic: 1021  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support