-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_95

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 14354, 14403
Sorry, prediction GlimmerHMM_glimmerT_59771-T1 fails validation.
(ATG)	 AG	13483-13511	GT	AGG
(CGT)	 AG	14354-14403	GT	AGG
-recovered GlimmerHMM_glimmerT_59771-T1, initial, 13483, 13511
-recovered GlimmerHMM_glimmerT_59771-T1, internal, 13483, 13511
-recovered GlimmerHMM_glimmerT_59771-T1, internal, 14354, 14403
Couldn't classify 2426, 2506
Sorry, prediction snap_scaffold_95-snap.1-T1 fails validation.
(CTC)	 AG	2426-2506	GT	CTG
(ACC)	 AG	2600-3205	GT	TGG
(CTC)	 AG	9858-9921	GT	AAG
-recovered snap_scaffold_95-snap.1-T1, terminal, 9858, 9921
-recovered snap_scaffold_95-snap.1-T1, internal, 2426, 2506
-recovered snap_scaffold_95-snap.1-T1, internal, 2600, 3205
-recovered snap_scaffold_95-snap.1-T1, internal, 9858, 9921
Couldn't classify 14354, 14403
Sorry, prediction snap_scaffold_95-snap.3-T1 fails validation.
(ATG)	 AC	10872-10912	GT	AGG
(ATA)	 AG	12186-12424	GT	GGG
(GGT)	 AG	12759-12899	GT	TTG
(ATA)	 AG	13937-14034	GT	GGG
(GGG)	 AG	14042-14283	GT	GGG
(CGT)	 AG	14354-14403	GT	AGG
-recovered snap_scaffold_95-snap.3-T1, initial, 10872, 10912
-recovered snap_scaffold_95-snap.3-T1, internal, 12186, 12424
-recovered snap_scaffold_95-snap.3-T1, internal, 12759, 12899
-recovered snap_scaffold_95-snap.3-T1, internal, 13937, 14034
-recovered snap_scaffold_95-snap.3-T1, internal, 14042, 14283
-recovered snap_scaffold_95-snap.3-T1, internal, 14354, 14403
Sorry, intron length (6) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_59768-T1
Valid prediction for GlimmerHMM_glimmerT_59770-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_95-snap.4-T1
Valid prediction for snap_scaffold_95-snap.2-T1
Valid prediction for GlimmerHMM_glimmerT_59769-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 9921, rend_intergenic: 3041  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 14403, rend_intergenic: 10879  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 16663
-exon list size: 35


building trellis

2.7    
5.4    
8.1    
10.8    
13.5    
16.2    
18.9    
21.6    
24.3    
27.0    
29.7    
32.4    
35.1    
37.8    
40.5    
43.2    
45.9    
48.6    
51.4    
54.1    
56.8    
59.5    
62.2    
64.9    
67.6    
70.3    
73.0    
75.7    
78.4    
81.1    
83.8    
86.5    
89.2    
91.9    
94.6    
97.3    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 9921, rend_intergenic: 3041  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 14403, rend_intergenic: 10879  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support