-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_943

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 113, 416
Sorry, prediction snap_scaffold_943-snap.1-T1 fails validation.
(GAC)	 AG	113-416	GT	GGG
(GGC)	 AG	1142-1210	GT	GTG
(ATG)	 AG	2897-2904	CT	AGC
-recovered snap_scaffold_943-snap.1-T1, terminal, 2897, 2904
-recovered snap_scaffold_943-snap.1-T1, internal, 113, 416
-recovered snap_scaffold_943-snap.1-T1, internal, 1142, 1210
Couldn't classify 113, 416
Sorry, prediction Augustus_model.g40276.t1 fails validation.
(GAC)	 AG	113-416	GT	GGG
(CTC)	 AG	573-616	AA	AAA
-recovered Augustus_model.g40276.t1, terminal, 573, 616
-recovered Augustus_model.g40276.t1, internal, 113, 416

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_60852-T1
Valid prediction for CodingQuarry_transcript_62490-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3878
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 2 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support