-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_940

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_60851-T1
Couldn't classify 97, 226
Couldn't classify 3418, 3490
Sorry, prediction snap_scaffold_940-snap.1-T1 fails validation.
(TCA)	 AG	97-226	GT	AGG
(GAA)	 AG	543-563	GT	AGG
(GAA)	 AG	625-645	GT	AGG
(GAA)	 AG	707-727	GT	AGG
(GAA)	 AG	789-809	GT	AGG
(GAA)	 AG	871-899	GT	GAG
(GAA)	 AG	953-1050	GT	AGG
(TCT)	 AG	1413-1547	GT	GAG
(GCT)	 AG	2287-2335	GT	GGG
(GAA)	 AG	3418-3490	GT	ATG
add_exon() Sorry, snap_scaffold_940-snap.1-T1 953-1050-terminal-2 is invalid.
-recovered snap_scaffold_940-snap.1-T1, terminal, 953, 1050
-recovered snap_scaffold_940-snap.1-T1, internal, 97, 226
-recovered snap_scaffold_940-snap.1-T1, internal, 543, 563
-recovered snap_scaffold_940-snap.1-T1, internal, 625, 645
-recovered snap_scaffold_940-snap.1-T1, internal, 707, 727
-recovered snap_scaffold_940-snap.1-T1, internal, 789, 809
-recovered snap_scaffold_940-snap.1-T1, internal, 871, 899
-recovered snap_scaffold_940-snap.1-T1, internal, 953, 1050
-recovered snap_scaffold_940-snap.1-T1, internal, 1413, 1547
-recovered snap_scaffold_940-snap.1-T1, internal, 2287, 2335
-recovered snap_scaffold_940-snap.1-T1, internal, 3418, 3490
Valid prediction for Augustus_model.g40275.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3902
-exon list size: 30


building trellis

3.1    
6.2    
9.4    
12.5    
15.6    
18.8    
21.9    
25.0    
28.1    
31.2    
34.4    
37.5    
40.6    
43.8    
46.9    
50.0    
53.1    
56.2    
59.4    
62.5    
65.6    
68.8    
71.9    
75.0    
78.1    
81.2    
84.4    
87.5    
90.6    
93.8    
96.9    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support