-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_94

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 138, 275
Sorry, prediction Augustus_model.g39603.t1 fails validation.
(GCG)	 AG	138-275	GT	AGG
(GAC)	 AG	628-738	GT	GAG
-recovered Augustus_model.g39603.t1, terminal, 628, 738
-recovered Augustus_model.g39603.t1, internal, 138, 275
-recovered Augustus_model.g39603.t1, internal, 628, 738
Valid prediction for HiQ_model.g39605.t1
Couldn't classify 138, 275
Sorry, prediction snap_scaffold_94-snap.1-T1 fails validation.
(GCG)	 AG	138-275	GT	AGG
(GAC)	 AG	628-729	GT	TGG
(AAC)	 AG	1437-1466	AA	AGA
-recovered snap_scaffold_94-snap.1-T1, terminal, 1437, 1466
-recovered snap_scaffold_94-snap.1-T1, internal, 138, 275
-recovered snap_scaffold_94-snap.1-T1, internal, 628, 729
Valid prediction for GlimmerHMM_glimmerT_59766-T1
Valid prediction for snap_scaffold_94-snap.3-T1
Valid prediction for CodingQuarry_transcript_62489-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for CodingQuarry_transcript_62488-T1
Valid prediction for snap_scaffold_94-snap.2-T1
Valid prediction for GlimmerHMM_glimmerT_59767-T1
Couldn't classify 7972, 8119
Sorry, prediction pasa_asmbl_55838.p2 fails validation.
(GAG)	 CA	7972-8119	GT	AGG
(CTT)	 AG	8391-8452	GT	AGG
(GAA)	 AG	8788-8907	GG	GAG
-recovered pasa_asmbl_55838.p2, terminal, 8788, 8907
-recovered pasa_asmbl_55838.p2, internal, 8391, 8452
Valid prediction for CodingQuarry_transcript_62487-T1
Valid prediction for Augustus_model.g39604.t1
Valid prediction for snap_scaffold_94-snap.4-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 17025
-exon list size: 34


building trellis

2.8    
5.6    
8.3    
11.1    
13.9    
16.7    
19.4    
22.2    
25.0    
27.8    
30.6    
33.3    
36.1    
38.9    
41.7    
44.4    
47.2    
50.0    
52.8    
55.6    
58.3    
61.1    
63.9    
66.7    
69.4    
72.2    
75.0    
77.8    
80.6    
83.3    
86.1    
88.9    
91.7    
94.4    
97.2    
-found 5 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 4 predictions persist after filtering for low support