-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_938

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1945, 2187
Sorry, prediction snap_scaffold_938-snap.2-T1 fails validation.
(ATG)	 GG	170-322	GT	AGG
(GGT)	 AG	556-851	GT	GAG
(GCA)	 AG	1945-2187	GT	GAG
-recovered snap_scaffold_938-snap.2-T1, initial, 170, 322
-recovered snap_scaffold_938-snap.2-T1, internal, 556, 851
-recovered snap_scaffold_938-snap.2-T1, internal, 1945, 2187

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 3793, 3866
Sorry, prediction Augustus_model.g40273.t1 fails validation.
(ATG)	 TC	1233-1235	GT	TGG
(GGC)	 AG	1954-2095	GT	GAG
(GGT)	 AG	3793-3866	GT	AAG
-recovered Augustus_model.g40273.t1, initial, 1233, 1235
-recovered Augustus_model.g40273.t1, internal, 1954, 2095
-recovered Augustus_model.g40273.t1, internal, 3793, 3866
Couldn't classify 369, 398
Couldn't classify 3793, 3866
Sorry, prediction snap_scaffold_938-snap.1-T1 fails validation.
(GGG)	 AG	369-398	GT	CGG
(GGC)	 AG	1954-2095	GT	GAG
(GGT)	 AG	3793-3866	GT	AAG
-recovered snap_scaffold_938-snap.1-T1, internal, 369, 398
-recovered snap_scaffold_938-snap.1-T1, internal, 1954, 2095
-recovered snap_scaffold_938-snap.1-T1, internal, 3793, 3866

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3549, rend_intergenic: 170  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 3917
-exon list size: 11


building trellis

7.7    
15.4    
23.1    
30.8    
38.5    
46.2    
53.8    
61.5    
69.2    
76.9    
84.6    
92.3    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 3549, rend_intergenic: 170  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support