-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_936

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 3269, 3353
Sorry, prediction snap_scaffold_936-snap.2-T1 fails validation.
(ATG)	 AA	2068-2772	GT	GAG
(TCT)	 AG	3269-3353	GT	ACG
-recovered snap_scaffold_936-snap.2-T1, initial, 2068, 2772
-recovered snap_scaffold_936-snap.2-T1, internal, 3269, 3353

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 476, 637
Sorry, prediction GlimmerHMM_glimmerT_60849-T1 fails validation.
(ACG)	 AG	476-637	GT	TGG
(GGC)	 AG	1092-1232	GG	AAG
-recovered GlimmerHMM_glimmerT_60849-T1, terminal, 1092, 1232
-recovered GlimmerHMM_glimmerT_60849-T1, internal, 476, 637
Couldn't classify 476, 676
Sorry, prediction Augustus_model.g40272.t1 fails validation.
(ACG)	 AG	476-676	GT	GGG
(GGC)	 AG	1092-1232	GG	AAG
-recovered Augustus_model.g40272.t1, terminal, 1092, 1232
-recovered Augustus_model.g40272.t1, internal, 476, 676
Couldn't classify 476, 678
Couldn't classify 2720, 2939
Sorry, prediction snap_scaffold_936-snap.1-T1 fails validation.
(ACG)	 AG	476-678	GT	GTG
(GGC)	 AG	1092-1126	GT	TGG
(GAC)	 AG	1234-1841	GT	CTG
(GTG)	 AG	2720-2939	GT	AGG
-recovered snap_scaffold_936-snap.1-T1, internal, 476, 678
-recovered snap_scaffold_936-snap.1-T1, internal, 1092, 1126
-recovered snap_scaffold_936-snap.1-T1, internal, 1234, 1841
-recovered snap_scaffold_936-snap.1-T1, internal, 2720, 2939

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3447, rend_intergenic: 2068  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 3922
-exon list size: 15


building trellis

5.9    
11.8    
17.6    
23.5    
29.4    
35.3    
41.2    
47.1    
52.9    
58.8    
64.7    
70.6    
76.5    
82.4    
88.2    
94.1    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 3447, rend_intergenic: 2068  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support