-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_933

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_60846-T1
Valid prediction for GlimmerHMM_glimmerT_60847-T1
Couldn't classify 246, 483
Sorry, prediction Augustus_model.g40271.t1 fails validation.
(CTG)	 AG	246-483	GT	AGG
(GTC)	 AG	705-890	GT	AGG
(GTT)	 AG	1002-1103	GT	TGG
(GTG)	 AG	1205-1332	GT	AGG
(GTG)	 AG	1424-1550	GT	TGG
(GCA)	 AG	1995-2054	GT	TGG
(TAG)	 AG	2138-2279	GT	GGG
(TCT)	 AG	2462-2543	GT	AGG
(GAT)	 AG	2691-2846	GT	AGG
(GTT)	 AG	2931-3140	CC	GAC
-recovered Augustus_model.g40271.t1, terminal, 2931, 3140
-recovered Augustus_model.g40271.t1, internal, 246, 483
-recovered Augustus_model.g40271.t1, internal, 705, 890
-recovered Augustus_model.g40271.t1, internal, 1002, 1103
-recovered Augustus_model.g40271.t1, internal, 1205, 1332
-recovered Augustus_model.g40271.t1, internal, 1424, 1550
-recovered Augustus_model.g40271.t1, internal, 1995, 2054
-recovered Augustus_model.g40271.t1, internal, 2138, 2279
-recovered Augustus_model.g40271.t1, internal, 2462, 2543
-recovered Augustus_model.g40271.t1, internal, 2691, 2846
Couldn't classify 246, 483
Sorry, prediction snap_scaffold_933-snap.1-T1 fails validation.
(CTG)	 AG	246-483	GT	AGG
(GTC)	 AG	705-890	GT	AGG
(GTT)	 AG	1002-1103	GT	TGG
(GTG)	 AG	1205-1332	GT	AGG
(GTG)	 AG	1424-1550	GT	TGG
(GCA)	 AG	1995-2041	GT	TGG
(GCA)	 AG	2179-2279	GT	GGG
(TCT)	 AG	2462-2543	GT	AGG
(GAT)	 AG	2691-2846	GT	AGG
(GTT)	 AG	2931-3140	CC	GAC
-recovered snap_scaffold_933-snap.1-T1, terminal, 2931, 3140
-recovered snap_scaffold_933-snap.1-T1, internal, 246, 483
-recovered snap_scaffold_933-snap.1-T1, internal, 705, 890
-recovered snap_scaffold_933-snap.1-T1, internal, 1002, 1103
-recovered snap_scaffold_933-snap.1-T1, internal, 1205, 1332
-recovered snap_scaffold_933-snap.1-T1, internal, 1424, 1550
-recovered snap_scaffold_933-snap.1-T1, internal, 1995, 2041
-recovered snap_scaffold_933-snap.1-T1, internal, 2179, 2279
-recovered snap_scaffold_933-snap.1-T1, internal, 2462, 2543
-recovered snap_scaffold_933-snap.1-T1, internal, 2691, 2846
Couldn't classify 2484, 2543
Sorry, prediction pasa_asmbl_55834.p1 fails validation.
(CTG)	 TC	2484-2543	GT	AGG
(GAT)	 AG	2691-2846	GT	AGG
(GTT)	 AG	2931-3140	CC	GAC
-recovered pasa_asmbl_55834.p1, terminal, 2931, 3140
-recovered pasa_asmbl_55834.p1, internal, 2691, 2846

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3939
-exon list size: 21


building trellis

4.3    
8.7    
13.0    
17.4    
21.7    
26.1    
30.4    
34.8    
39.1    
43.5    
47.8    
52.2    
56.5    
60.9    
65.2    
69.6    
73.9    
78.3    
82.6    
87.0    
91.3    
95.7    
-found 2 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support