-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_931

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1763, 2035
Sorry, prediction GlimmerHMM_glimmerT_60845-T1 fails validation.
(ATG)	 TG	698-850	GT	TGG
(GCC)	 AG	1763-2035	GT	AGG
-recovered GlimmerHMM_glimmerT_60845-T1, initial, 698, 850
-recovered GlimmerHMM_glimmerT_60845-T1, internal, 1763, 2035
Couldn't classify 550, 568
Sorry, prediction Augustus_model.g40270.t1 fails validation.
(GCC)	 AG	550-568	GT	AGG
(GTG)	 AG	695-850	GT	TGG
(GCC)	 AG	1763-2035	GT	AGG
(AAG)	 AG	2912-2923	GT	GAG
-recovered Augustus_model.g40270.t1, terminal, 2912, 2923
-recovered Augustus_model.g40270.t1, internal, 550, 568
-recovered Augustus_model.g40270.t1, internal, 695, 850
-recovered Augustus_model.g40270.t1, internal, 1763, 2035
-recovered Augustus_model.g40270.t1, internal, 2912, 2923
Couldn't classify 187, 285
Couldn't classify 1763, 2035
Sorry, prediction snap_scaffold_931-snap.1-T1 fails validation.
(CGC)	 AG	187-285	GT	ATG
(GTG)	 AG	695-850	GT	TGG
(GCC)	 AG	1763-2035	GT	AGG
-recovered snap_scaffold_931-snap.1-T1, internal, 187, 285
-recovered snap_scaffold_931-snap.1-T1, internal, 695, 850
-recovered snap_scaffold_931-snap.1-T1, internal, 1763, 2035

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1959, 2162
Couldn't classify 3040, 3221
Sorry, prediction snap_scaffold_931-snap.2-T1 fails validation.
(CTC)	 AG	1959-2162	GT	TGG
(TTT)	 AG	3040-3221	GT	ACG
-recovered snap_scaffold_931-snap.2-T1, internal, 1959, 2162
-recovered snap_scaffold_931-snap.2-T1, internal, 3040, 3221

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2035, rend_intergenic: 725  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 3945
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 2035, rend_intergenic: 725  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support