-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_93

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 16510, 16702
Sorry, prediction snap_scaffold_93-snap.2-T1 fails validation.
(ATG)	 AG	10975-11004	GT	AGG
(GAC)	 AG	12250-12393	GT	AGG
(ATC)	 AG	13023-13293	GT	AGG
(GTC)	 AG	16510-16702	GT	AGG
-recovered snap_scaffold_93-snap.2-T1, initial, 10975, 11004
-recovered snap_scaffold_93-snap.2-T1, internal, 10975, 11004
-recovered snap_scaffold_93-snap.2-T1, internal, 12250, 12393
-recovered snap_scaffold_93-snap.2-T1, internal, 13023, 13293
-recovered snap_scaffold_93-snap.2-T1, internal, 16510, 16702
Couldn't classify 16510, 16702
Sorry, prediction GlimmerHMM_glimmerT_59765-T1 fails validation.
(ATG)	 AG	10975-11013	GT	TTG
(GAC)	 AG	12250-12393	GT	AGG
(ATC)	 AG	13023-13293	GT	AGG
(GTC)	 AG	16510-16702	GT	AGG
-recovered GlimmerHMM_glimmerT_59765-T1, initial, 10975, 11013
-recovered GlimmerHMM_glimmerT_59765-T1, internal, 10975, 11013
-recovered GlimmerHMM_glimmerT_59765-T1, internal, 12250, 12393
-recovered GlimmerHMM_glimmerT_59765-T1, internal, 13023, 13293
-recovered GlimmerHMM_glimmerT_59765-T1, internal, 16510, 16702
Valid prediction for Augustus_model.g39602.t1
Couldn't classify 249, 546
Sorry, prediction snap_scaffold_93-snap.1-T1 fails validation.
(GCC)	 AG	249-546	GT	AGG
(GCG)	 AG	5617-5664	GT	GGG
(TTT)	 AG	8033-8113	GT	GAG
-recovered snap_scaffold_93-snap.1-T1, terminal, 8033, 8113
-recovered snap_scaffold_93-snap.1-T1, internal, 249, 546
-recovered snap_scaffold_93-snap.1-T1, internal, 5617, 5664
-recovered snap_scaffold_93-snap.1-T1, internal, 8033, 8113

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_93-snap.3-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 16702, rend_intergenic: 11492  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 17386
-exon list size: 29


building trellis

3.2    
6.5    
9.7    
12.9    
16.1    
19.4    
22.6    
25.8    
29.0    
32.3    
35.5    
38.7    
41.9    
45.2    
48.4    
51.6    
54.8    
58.1    
61.3    
64.5    
67.7    
71.0    
74.2    
77.4    
80.6    
83.9    
87.1    
90.3    
93.5    
96.8    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 16702, rend_intergenic: 11492  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 10974
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support