-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_926

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for pasa_asmbl_55833.p1
Couldn't classify 436, 624
Couldn't classify 1943, 2583
Sorry, prediction snap_scaffold_926-snap.1-T1 fails validation.
(GCT)	 AG	436-624	GT	AGG
(CTC)	 AG	911-1024	GT	AGG
(GCT)	 AG	1184-1305	GT	TGG
(ATG)	 AG	1943-2583	GT	AGG
add_exon() Sorry, snap_scaffold_926-snap.1-T1 1943-2583-initial-1 is invalid.
-recovered snap_scaffold_926-snap.1-T1, initial, 1943, 2583
-recovered snap_scaffold_926-snap.1-T1, internal, 436, 624
-recovered snap_scaffold_926-snap.1-T1, internal, 911, 1024
-recovered snap_scaffold_926-snap.1-T1, internal, 1184, 1305
-recovered snap_scaffold_926-snap.1-T1, internal, 1943, 2583
Couldn't classify 436, 624
Sorry, prediction Augustus_model.g40269.t1 fails validation.
(GCT)	 AG	436-624	GT	AGG
(GTT)	 AG	854-1024	GT	AGG
(GCT)	 AG	1184-1333	GT	AAG
(TGT)	 AG	1601-1650	GT	GTG
(ATG)	 AG	1943-2592	TT	AGT
-recovered Augustus_model.g40269.t1, terminal, 1943, 2592
-recovered Augustus_model.g40269.t1, internal, 436, 624
-recovered Augustus_model.g40269.t1, internal, 854, 1024
-recovered Augustus_model.g40269.t1, internal, 1184, 1333
-recovered Augustus_model.g40269.t1, internal, 1601, 1650
Couldn't classify 854, 1024
Sorry, prediction GlimmerHMM_glimmerT_60844-T1 fails validation.
(GTT)	 AG	854-1024	GT	AGG
(GCT)	 AG	1184-1314	GT	CTG
(ATG)	 AG	1943-2592	TT	AGT
-recovered GlimmerHMM_glimmerT_60844-T1, terminal, 1943, 2592
-recovered GlimmerHMM_glimmerT_60844-T1, internal, 854, 1024
-recovered GlimmerHMM_glimmerT_60844-T1, internal, 1184, 1314

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3957
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support