-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_925 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +) -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Couldn't classify 3718, 3903 Sorry, prediction snap_scaffold_925-snap.1-T1 fails validation. (ATG) AC 1371-1425 GT AGG (ACT) AG 1691-1756 GT AGG (GAC) AG 3718-3903 GT AGG -recovered snap_scaffold_925-snap.1-T1, initial, 1371, 1425 -recovered snap_scaffold_925-snap.1-T1, internal, 1691, 1756 -recovered snap_scaffold_925-snap.1-T1, internal, 3718, 3903 Couldn't classify 488, 704 Sorry, prediction snap_scaffold_925-snap.2-T1 fails validation. (GAG) AG 488-704 GT AGG (CCA) AG 745-910 TT AGT -recovered snap_scaffold_925-snap.2-T1, terminal, 745, 910 -recovered snap_scaffold_925-snap.2-T1, internal, 488, 704 Couldn't classify 488, 704 Sorry, prediction GlimmerHMM_glimmerT_60843-T1 fails validation. (GAG) AG 488-704 GT AGG (CCA) AG 745-881 GT TGG (ACT) AG 1691-1756 GT AGG (CTT) AG 2134-2198 TA GAT -recovered GlimmerHMM_glimmerT_60843-T1, terminal, 2134, 2198 -recovered GlimmerHMM_glimmerT_60843-T1, internal, 488, 704 -recovered GlimmerHMM_glimmerT_60843-T1, internal, 745, 881 -recovered GlimmerHMM_glimmerT_60843-T1, internal, 1691, 1756 Couldn't classify 3718, 3903 Sorry, prediction Augustus_model.g40268.t1 fails validation. (ATG) CA 35-41 GT GGG (AGC) AG 144-188 GT TGG (GAG) AG 488-548 GT AGG (CCA) AG 745-881 GT TGG (ACT) AG 1691-1756 GT AGG (GAC) AG 3718-3903 GT AGG -recovered Augustus_model.g40268.t1, initial, 35, 41 -recovered Augustus_model.g40268.t1, internal, 144, 188 -recovered Augustus_model.g40268.t1, internal, 488, 548 -recovered Augustus_model.g40268.t1, internal, 745, 881 -recovered Augustus_model.g40268.t1, internal, 1691, 1756 -recovered Augustus_model.g40268.t1, internal, 3718, 3903 -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -) -building DP trellis -building trellis in range 1 - 3958 -exon list size: 14 building trellis 6.2 12.5 18.8 25.0 31.2 37.5 43.8 50.0 56.2 62.5 68.8 75.0 81.2 87.5 93.8 -found 1 predictions from path traversal GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 1 predictions persist after filtering for low support