-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_923

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 134, 576
Couldn't classify 2568, 2738
Sorry, prediction snap_scaffold_923-snap.2-T1 fails validation.
(TCT)	 AG	134-576	GT	TTG
(AAG)	 AG	695-905	GT	ATG
(GAT)	 AG	1436-1569	GT	AAG
(ATC)	 AG	2568-2738	GT	TGG
-recovered snap_scaffold_923-snap.2-T1, internal, 134, 576
-recovered snap_scaffold_923-snap.2-T1, internal, 695, 905
-recovered snap_scaffold_923-snap.2-T1, internal, 1436, 1569
-recovered snap_scaffold_923-snap.2-T1, internal, 2568, 2738
Couldn't classify 134, 184
Sorry, prediction Augustus_model.g40267.t1 fails validation.
(TCT)	 AG	134-184	GT	CTG
(GAT)	 AG	1436-1573	AC	AAA
-recovered Augustus_model.g40267.t1, terminal, 1436, 1573
-recovered Augustus_model.g40267.t1, internal, 134, 184

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1739, 1860
Sorry, prediction snap_scaffold_923-snap.1-T1 fails validation.
(TGG)	 AG	1739-1860	GT	ACG
(GGC)	 AG	2433-2622	GT	CAG
(GAC)	 AG	3788-3870	CA	GAC
-recovered snap_scaffold_923-snap.1-T1, terminal, 3788, 3870
-recovered snap_scaffold_923-snap.1-T1, internal, 1739, 1860
-recovered snap_scaffold_923-snap.1-T1, internal, 2433, 2622
Valid prediction for GlimmerHMM_glimmerT_60842-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2231, rend_intergenic: 134  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 3969
-exon list size: 11


building trellis

7.7    
15.4    
23.1    
30.8    
38.5    
46.2    
53.8    
61.5    
69.2    
76.9    
84.6    
92.3    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 2231, rend_intergenic: 134  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support