-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_917

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 95, 165
Couldn't classify 3888, 3977
Sorry, prediction snap_scaffold_917-snap.1-T1 fails validation.
(GAA)	 AG	95-165	GT	AGG
(GTG)	 AG	328-462	GT	AGG
(GCG)	 AG	558-704	GT	AGG
(GAC)	 AG	3040-3153	GT	AGG
(GTG)	 AG	3698-3811	GT	AGG
(AAA)	 AG	3888-3977	GT	AGG
-recovered snap_scaffold_917-snap.1-T1, internal, 95, 165
-recovered snap_scaffold_917-snap.1-T1, internal, 328, 462
-recovered snap_scaffold_917-snap.1-T1, internal, 558, 704
-recovered snap_scaffold_917-snap.1-T1, internal, 3040, 3153
-recovered snap_scaffold_917-snap.1-T1, internal, 3698, 3811
-recovered snap_scaffold_917-snap.1-T1, internal, 3888, 3977
Couldn't classify 3888, 3980
Sorry, prediction GlimmerHMM_glimmerT_60839-T1 fails validation.
(ATG)	 TG	331-462	GT	AGG
(GCG)	 AG	558-704	GT	AGG
(GAC)	 AG	3040-3153	GT	AGG
(GTG)	 AG	3698-3811	GT	AGG
(AAA)	 AG	3888-3980		TG
-recovered GlimmerHMM_glimmerT_60839-T1, initial, 331, 462
-recovered GlimmerHMM_glimmerT_60839-T1, internal, 558, 704
-recovered GlimmerHMM_glimmerT_60839-T1, internal, 3040, 3153
-recovered GlimmerHMM_glimmerT_60839-T1, internal, 3698, 3811
Couldn't classify 1, 165
Couldn't classify 3888, 3980
Sorry, prediction Augustus_model.g40265.t1 fails validation.
(GTG)	 TG	1-165	GT	AGG
(GTG)	 AG	328-462	GT	AGG
(GCG)	 AG	558-704	GT	AGG
(GAC)	 AG	3040-3153	GT	AGG
(GTG)	 AG	3698-3811	GT	AGG
(AAA)	 AG	3888-3980		TG
-recovered Augustus_model.g40265.t1, internal, 328, 462
-recovered Augustus_model.g40265.t1, internal, 558, 704
-recovered Augustus_model.g40265.t1, internal, 3040, 3153
-recovered Augustus_model.g40265.t1, internal, 3698, 3811

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 176, 286
Couldn't classify 3290, 3409
Sorry, prediction snap_scaffold_917-snap.2-T1 fails validation.
(GTT)	 AG	176-286	GT	TGG
(AGC)	 AG	843-915	GT	GGG
(AAT)	 AG	3290-3409	GT	CTG
-recovered snap_scaffold_917-snap.2-T1, internal, 176, 286
-recovered snap_scaffold_917-snap.2-T1, internal, 843, 915
-recovered snap_scaffold_917-snap.2-T1, internal, 3290, 3409

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3977, rend_intergenic: 572  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 3980
-exon list size: 11


building trellis

7.7    
15.4    
23.1    
30.8    
38.5    
46.2    
53.8    
61.5    
69.2    
76.9    
84.6    
92.3    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 3977, rend_intergenic: 572  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support