-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_91

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_91-snap.5-T1
Valid prediction for snap_scaffold_91-snap.4-T1
Valid prediction for snap_scaffold_91-snap.3-T1
Couldn't classify 836, 1057
Sorry, prediction snap_scaffold_91-snap.1-T1 fails validation.
(ATT)	 AG	836-1057	GT	AGG
(GCT)	 AG	7549-7576	TG	AAT
-recovered snap_scaffold_91-snap.1-T1, terminal, 7549, 7576
-recovered snap_scaffold_91-snap.1-T1, internal, 836, 1057

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 4274, 4431
Sorry, prediction snap_scaffold_91-snap.2-T1 fails validation.
(GCT)	 AG	4274-4431	GT	AGG
(GTA)	 AG	4485-4514	GT	ATG
(AAT)	 AG	4600-5589	GT	AGG
(GCC)	 AG	5960-6027	GT	GGG
(ATC)	 AG	7705-7790	GT	TGG
(ACC)	 AG	8418-8800	AC	AGA
-recovered snap_scaffold_91-snap.2-T1, terminal, 8418, 8800
-recovered snap_scaffold_91-snap.2-T1, internal, 4274, 4431
-recovered snap_scaffold_91-snap.2-T1, internal, 4485, 4514
-recovered snap_scaffold_91-snap.2-T1, internal, 4600, 5589
-recovered snap_scaffold_91-snap.2-T1, internal, 5960, 6027
-recovered snap_scaffold_91-snap.2-T1, internal, 7705, 7790
Valid prediction for Augustus_model.g39598.t1
Valid prediction for Augustus_model.g39599.t1
Valid prediction for GlimmerHMM_glimmerT_59762-T1
add_exon() Sorry, GlimmerHMM_glimmerT_59762-T1 8545-8800-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 13330, rend_intergenic: 8970  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 17603
-exon list size: 27


building trellis

3.4    
6.9    
10.3    
13.8    
17.2    
20.7    
24.1    
27.6    
31.0    
34.5    
37.9    
41.4    
44.8    
48.3    
51.7    
55.2    
58.6    
62.1    
65.5    
69.0    
72.4    
75.9    
79.3    
82.8    
86.2    
89.7    
93.1    
96.6    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 13330, rend_intergenic: 8970  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support