-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_908

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 2884, 3035
Sorry, prediction GlimmerHMM_glimmerT_60835-T1 fails validation.
(ATG)	 GG	2255-2269	GT	GGG
(ACA)	 AG	2884-3035	GT	ACG
-recovered GlimmerHMM_glimmerT_60835-T1, initial, 2255, 2269
-recovered GlimmerHMM_glimmerT_60835-T1, internal, 2884, 3035
Couldn't classify 32, 94
Sorry, prediction snap_scaffold_908-snap.1-T1 fails validation.
(AAG)	 AG	32-94	GT	TGG
(AAA)	 AG	616-896	GT	AGG
(GTA)	 AG	1245-1379	AA	GAA
-recovered snap_scaffold_908-snap.1-T1, terminal, 1245, 1379
-recovered snap_scaffold_908-snap.1-T1, internal, 32, 94
-recovered snap_scaffold_908-snap.1-T1, internal, 616, 896
Couldn't classify 1, 94
Sorry, prediction Augustus_model.g40261.t1 fails validation.
(TAT)	 CT	1-94	GT	TGG
(AAA)	 AG	616-732	GT	GGG
(AGG)	 AG	850-896	GT	AGG
(GTA)	 AG	1245-1379	AA	GAA
-recovered Augustus_model.g40261.t1, terminal, 1245, 1379
-recovered Augustus_model.g40261.t1, internal, 616, 732
-recovered Augustus_model.g40261.t1, internal, 850, 896
Couldn't classify 2888, 3035
Sorry, prediction snap_scaffold_908-snap.2-T1 fails validation.
(ATG)	 CT	2387-2471	GT	TGG
(CAG)	 AG	2888-3035	GT	ACG
-recovered snap_scaffold_908-snap.2-T1, initial, 2387, 2471
-recovered snap_scaffold_908-snap.2-T1, internal, 2888, 3035

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g40262.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4000
-exon list size: 15


building trellis

5.9    
11.8    
17.6    
23.5    
29.4    
35.3    
41.2    
47.1    
52.9    
58.8    
64.7    
70.6    
76.5    
82.4    
88.2    
94.1    
-found 2 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support