-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_907

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 3647, 3899
Sorry, prediction snap_scaffold_907-snap.2-T1 fails validation.
(ATG)	 AT	1652-1863	GT	AGG
(AAG)	 AG	3647-3899	GT	GGG
-recovered snap_scaffold_907-snap.2-T1, initial, 1652, 1863
-recovered snap_scaffold_907-snap.2-T1, internal, 3647, 3899
Valid prediction for snap_scaffold_907-snap.1-T1
add_exon() Sorry, snap_scaffold_907-snap.1-T1 400-707-terminal-1 is invalid.
Valid prediction for GlimmerHMM_glimmerT_60833-T1
add_exon() Sorry, GlimmerHMM_glimmerT_60833-T1 526-707-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1434, 1552
Sorry, prediction GlimmerHMM_glimmerT_60834-T1 fails validation.
(ACT)	 AG	1434-1552	GT	AGG
(GGC)	 AG	1996-2136	CC	GAC
-recovered GlimmerHMM_glimmerT_60834-T1, terminal, 1996, 2136
-recovered GlimmerHMM_glimmerT_60834-T1, internal, 1434, 1552
Couldn't classify 1434, 1575
Sorry, prediction snap_scaffold_907-snap.3-T1 fails validation.
(ACT)	 AG	1434-1575	GT	AAG
(GGC)	 AG	1996-2284	CG	AGC
-recovered snap_scaffold_907-snap.3-T1, terminal, 1996, 2284
-recovered snap_scaffold_907-snap.3-T1, internal, 1434, 1575

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3899, rend_intergenic: 1717  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 4000
-exon list size: 11


building trellis

7.7    
15.4    
23.1    
30.8    
38.5    
46.2    
53.8    
61.5    
69.2    
76.9    
84.6    
92.3    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 3899, rend_intergenic: 1717  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support