-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_902

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 453, 624
Sorry, prediction Augustus_model.g40259.t1 fails validation.
(ACG)	 AG	453-624	GT	CAG
(AAC)	 AG	899-998	GT	AGG
-recovered Augustus_model.g40259.t1, terminal, 899, 998
-recovered Augustus_model.g40259.t1, internal, 453, 624
-recovered Augustus_model.g40259.t1, internal, 899, 998

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 231, 319
Sorry, prediction snap_scaffold_902-snap.1-T1 fails validation.
(ATC)	 AG	231-319	GT	ATG
(CGT)	 AG	3398-3542	GT	AGG
-recovered snap_scaffold_902-snap.1-T1, terminal, 3398, 3542
-recovered snap_scaffold_902-snap.1-T1, internal, 231, 319
-recovered snap_scaffold_902-snap.1-T1, internal, 3398, 3542
Couldn't classify 231, 319
Sorry, prediction GlimmerHMM_glimmerT_60831-T1 fails validation.
(ATC)	 AG	231-319	GT	ATG
(CGT)	 AG	3398-3546	GC	GAG
-recovered GlimmerHMM_glimmerT_60831-T1, terminal, 3398, 3546
-recovered GlimmerHMM_glimmerT_60831-T1, internal, 231, 319
-recovered GlimmerHMM_glimmerT_60831-T1, internal, 3398, 3546

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4002
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support