-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_900

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 2116, 2252
Sorry, prediction snap_scaffold_900-snap.2-T1 fails validation.
(ATG)	 GA	1189-1420	GT	AAG
(TTG)	 AG	2116-2252	GT	CGG
-recovered snap_scaffold_900-snap.2-T1, initial, 1189, 1420
-recovered snap_scaffold_900-snap.2-T1, internal, 2116, 2252

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1689, 1900
Sorry, prediction GlimmerHMM_glimmerT_60829-T1 fails validation.
(ATC)	 AG	1689-1900	GT	AAG
(GAA)	 AG	3714-3903	GA	AGG
-recovered GlimmerHMM_glimmerT_60829-T1, terminal, 3714, 3903
-recovered GlimmerHMM_glimmerT_60829-T1, internal, 1689, 1900
Couldn't classify 1686, 1900
Couldn't classify 3714, 3891
Sorry, prediction pasa_asmbl_55826.p1 fails validation.
(CAG)	 TC	1686-1900	GT	AAG
(GAA)	 AG	3714-3891	GA	AGG
Couldn't classify 1689, 1900
Couldn't classify 3714, 3899
Sorry, prediction snap_scaffold_900-snap.1-T1 fails validation.
(ATC)	 AG	1689-1900	GT	AAG
(GAA)	 AG	3714-3899	GT	GGG
-recovered snap_scaffold_900-snap.1-T1, internal, 1689, 1900
-recovered snap_scaffold_900-snap.1-T1, internal, 3714, 3899
Couldn't classify 1027, 1107
Couldn't classify 3714, 3899
Sorry, prediction Augustus_model.g40258.t1 fails validation.
(CGT)	 AG	1027-1107	GT	TAG
(ATC)	 AG	1689-1900	GT	AAG
(GAA)	 AG	3714-3899	GT	GGG
-recovered Augustus_model.g40258.t1, internal, 1027, 1107
-recovered Augustus_model.g40258.t1, internal, 1689, 1900
-recovered Augustus_model.g40258.t1, internal, 3714, 3899

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2318, rend_intergenic: 1189  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 4006
-exon list size: 8


building trellis

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50.0    
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70.0    
80.0    
90.0    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 2318, rend_intergenic: 1189  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support