-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_9/scaffold_9_904991-1135614

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_21553-T1
Valid prediction for Augustus_model.g14343.t1
Valid prediction for Augustus_model.g14345.t1
Valid prediction for snap_scaffold_9-snap.233-T1
Valid prediction for snap_scaffold_9-snap.204-T1
Valid prediction for snap_scaffold_9-snap.231-T1
Valid prediction for Augustus_model.g14338.t1
Valid prediction for snap_scaffold_9-snap.236-T1
Valid prediction for snap_scaffold_9-snap.201-T1
Valid prediction for GlimmerHMM_glimmerT_21565-T1
Valid prediction for snap_scaffold_9-snap.200-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for snap_scaffold_9-snap.221-T1
Valid prediction for Augustus_model.g14346.t1
Valid prediction for GlimmerHMM_glimmerT_21558-T1
Valid prediction for snap_scaffold_9-snap.214-T1
Valid prediction for GlimmerHMM_glimmerT_21563-T1
Valid prediction for Augustus_model.g14337.t1
Valid prediction for snap_scaffold_9-snap.215-T1
Valid prediction for snap_scaffold_9-snap.232-T1
Valid prediction for snap_scaffold_9-snap.241-T1
Valid prediction for GlimmerHMM_glimmerT_21547-T1
Valid prediction for snap_scaffold_9-snap.220-T1
Valid prediction for Augustus_model.g14344.t1
Valid prediction for Augustus_model.g14340.t1
Valid prediction for GlimmerHMM_glimmerT_21566-T1
Valid prediction for GlimmerHMM_glimmerT_21554-T1
Valid prediction for GlimmerHMM_glimmerT_21569-T1
Valid prediction for GlimmerHMM_glimmerT_21560-T1
Valid prediction for snap_scaffold_9-snap.209-T1
Valid prediction for GlimmerHMM_glimmerT_21561-T1
Valid prediction for snap_scaffold_9-snap.223-T1
Valid prediction for snap_scaffold_9-snap.229-T1
Valid prediction for snap_scaffold_9-snap.246-T1
Valid prediction for GlimmerHMM_glimmerT_21556-T1
Valid prediction for snap_scaffold_9-snap.239-T1
Valid prediction for GlimmerHMM_glimmerT_21548-T1
Valid prediction for snap_scaffold_9-snap.237-T1
Valid prediction for GlimmerHMM_glimmerT_21562-T1
Valid prediction for snap_scaffold_9-snap.217-T1
Valid prediction for GlimmerHMM_glimmerT_21555-T1
Valid prediction for Augustus_model.g14341.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_21546-T1
Valid prediction for GlimmerHMM_glimmerT_21552-T1
Valid prediction for snap_scaffold_9-snap.242-T1
Valid prediction for snap_scaffold_9-snap.208-T1
Valid prediction for snap_scaffold_9-snap.230-T1
Valid prediction for snap_scaffold_9-snap.219-T1
Valid prediction for snap_scaffold_9-snap.225-T1
Valid prediction for snap_scaffold_9-snap.210-T1
Valid prediction for GlimmerHMM_glimmerT_21564-T1
Valid prediction for Augustus_model.g14342.t1
Valid prediction for GlimmerHMM_glimmerT_21545-T1
Valid prediction for snap_scaffold_9-snap.218-T1
Valid prediction for snap_scaffold_9-snap.206-T1
Valid prediction for snap_scaffold_9-snap.238-T1
Valid prediction for snap_scaffold_9-snap.228-T1
Valid prediction for GlimmerHMM_glimmerT_21550-T1
Valid prediction for snap_scaffold_9-snap.247-T1
Valid prediction for snap_scaffold_9-snap.224-T1
Valid prediction for snap_scaffold_9-snap.235-T1
Couldn't classify 72174, 72506
Sorry, prediction pasa_asmbl_53799.p1 fails validation.
(GAG)	 TG	72174-72506	GG	AAG
Valid prediction for snap_scaffold_9-snap.222-T1
Valid prediction for Augustus_model.g14335.t1
Valid prediction for GlimmerHMM_glimmerT_21549-T1
Valid prediction for snap_scaffold_9-snap.244-T1
Valid prediction for snap_scaffold_9-snap.240-T1
Valid prediction for snap_scaffold_9-snap.203-T1
Valid prediction for Augustus_model.g14339.t1
Valid prediction for snap_scaffold_9-snap.226-T1
Valid prediction for Augustus_model.g14336.t1
Valid prediction for snap_scaffold_9-snap.243-T1
Valid prediction for GlimmerHMM_glimmerT_21568-T1
Valid prediction for Augustus_model.g14334.t1
Valid prediction for snap_scaffold_9-snap.207-T1
Valid prediction for snap_scaffold_9-snap.234-T1
Valid prediction for snap_scaffold_9-snap.227-T1
Valid prediction for snap_scaffold_9-snap.211-T1
Valid prediction for snap_scaffold_9-snap.202-T1
Valid prediction for snap_scaffold_9-snap.205-T1
Valid prediction for GlimmerHMM_glimmerT_21567-T1
Valid prediction for snap_scaffold_9-snap.216-T1
Valid prediction for snap_scaffold_9-snap.212-T1
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for snap_scaffold_9-snap.213-T1
Valid prediction for GlimmerHMM_glimmerT_21570-T1
Valid prediction for GlimmerHMM_glimmerT_21551-T1
Valid prediction for GlimmerHMM_glimmerT_21559-T1
Valid prediction for snap_scaffold_9-snap.245-T1
Valid prediction for GlimmerHMM_glimmerT_21557-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 10394, rend_intergenic: 7332  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 40536, rend_intergenic: 33308  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 53713, rend_intergenic: 40943  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 59314, rend_intergenic: 54242  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 64837, rend_intergenic: 61511  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 68449, rend_intergenic: 64986  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 78186, rend_intergenic: 68622  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 82149, rend_intergenic: 79704  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 102399, rend_intergenic: 90604  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 109853, rend_intergenic: 103926  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 124874, rend_intergenic: 109891  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 131057, rend_intergenic: 124894  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 153359, rend_intergenic: 141843  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 158483, rend_intergenic: 154540  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 165560, rend_intergenic: 158871  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 167614, rend_intergenic: 165635  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 173648, rend_intergenic: 168196  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 179987, rend_intergenic: 174476  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 201658, rend_intergenic: 183696  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 215459, rend_intergenic: 212363  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 230624
-exon list size: 306


building trellis

0.3    
0.6    
1.0    
1.3    
1.6    
1.9    
2.3    
2.6    
2.9    
3.2    
3.6    
3.9    
4.2    
4.5    
4.9    
5.2    
5.5    
5.8    
6.2    
6.5    
6.8    
7.1    
7.5    
7.8    
8.1    
8.4    
8.8    
9.1    
9.4    
9.7    
10.1    
10.4    
10.7    
11.0    
11.4    
11.7    
12.0    
12.3    
12.7    
13.0    
13.3    
13.6    
14.0    
14.3    
14.6    
14.9    
15.3    
15.6    
15.9    
16.2    
16.6    
16.9    
17.2    
17.5    
17.9    
18.2    
18.5    
18.8    
19.2    
19.5    
19.8    
20.1    
20.5    
20.8    
21.1    
21.4    
21.8    
22.1    
22.4    
22.7    
23.1    
23.4    
23.7    
24.0    
24.4    
24.7    
25.0    
25.3    
25.6    
26.0    
26.3    
26.6    
26.9    
27.3    
27.6    
27.9    
28.2    
28.6    
28.9    
29.2    
29.5    
29.9    
30.2    
30.5    
30.8    
31.2    
31.5    
31.8    
32.1    
32.5    
32.8    
33.1    
33.4    
33.8    
34.1    
34.4    
34.7    
35.1    
35.4    
35.7    
36.0    
36.4    
36.7    
37.0    
37.3    
37.7    
38.0    
38.3    
38.6    
39.0    
39.3    
39.6    
39.9    
40.3    
40.6    
40.9    
41.2    
41.6    
41.9    
42.2    
42.5    
42.9    
43.2    
43.5    
43.8    
44.2    
44.5    
44.8    
45.1    
45.5    
45.8    
46.1    
46.4    
46.8    
47.1    
47.4    
47.7    
48.1    
48.4    
48.7    
49.0    
49.4    
49.7    
50.0    
50.3    
50.6    
51.0    
51.3    
51.6    
51.9    
52.3    
52.6    
52.9    
53.2    
53.6    
53.9    
54.2    
54.5    
54.9    
55.2    
55.5    
55.8    
56.2    
56.5    
56.8    
57.1    
57.5    
57.8    
58.1    
58.4    
58.8    
59.1    
59.4    
59.7    
60.1    
60.4    
60.7    
61.0    
61.4    
61.7    
62.0    
62.3    
62.7    
63.0    
63.3    
63.6    
64.0    
64.3    
64.6    
64.9    
65.3    
65.6    
65.9    
66.2    
66.6    
66.9    
67.2    
67.5    
67.9    
68.2    
68.5    
68.8    
69.2    
69.5    
69.8    
70.1    
70.5    
70.8    
71.1    
71.4    
71.8    
72.1    
72.4    
72.7    
73.1    
73.4    
73.7    
74.0    
74.4    
74.7    
75.0    
75.3    
75.6    
76.0    
76.3    
76.6    
76.9    
77.3    
77.6    
77.9    
78.2    
78.6    
78.9    
79.2    
79.5    
79.9    
80.2    
80.5    
80.8    
81.2    
81.5    
81.8    
82.1    
82.5    
82.8    
83.1    
83.4    
83.8    
84.1    
84.4    
84.7    
85.1    
85.4    
85.7    
86.0    
86.4    
86.7    
87.0    
87.3    
87.7    
88.0    
88.3    
88.6    
89.0    
89.3    
89.6    
89.9    
90.3    
90.6    
90.9    
91.2    
91.6    
91.9    
92.2    
92.5    
92.9    
93.2    
93.5    
93.8    
94.2    
94.5    
94.8    
95.1    
95.5    
95.8    
96.1    
96.4    
96.8    
97.1    
97.4    
97.7    
98.1    
98.4    
98.7    
99.0    
99.4    
99.7    
-found 38 predictions from path traversal
Error with prediction: snap lend_intergenic: 10394, rend_intergenic: 7332  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 40536, rend_intergenic: 33308  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 53713, rend_intergenic: 40943  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 59314, rend_intergenic: 54242  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 64837, rend_intergenic: 61511  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 68449, rend_intergenic: 64986  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 78186, rend_intergenic: 68622  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 82149, rend_intergenic: 79704  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 102399, rend_intergenic: 90604  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 109853, rend_intergenic: 103926  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 124874, rend_intergenic: 109891  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 131057, rend_intergenic: 124894  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 153359, rend_intergenic: 141843  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 158483, rend_intergenic: 154540  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 165560, rend_intergenic: 158871  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 167614, rend_intergenic: 165635  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 173648, rend_intergenic: 168196  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 179987, rend_intergenic: 174476  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 201658, rend_intergenic: 183696  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 215459, rend_intergenic: 212363  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 20 predictions persist after filtering for low support