-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_9/scaffold_9_8993321-9266259

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_9-snap.1826-T1
Valid prediction for snap_scaffold_9-snap.1835-T1
Valid prediction for GlimmerHMM_glimmerT_22649-T1
Valid prediction for snap_scaffold_9-snap.1847-T1
Valid prediction for snap_scaffold_9-snap.1817-T1
Valid prediction for snap_scaffold_9-snap.1818-T1
Valid prediction for GlimmerHMM_glimmerT_22646-T1
Valid prediction for GlimmerHMM_glimmerT_22648-T1
Valid prediction for snap_scaffold_9-snap.1838-T1
Valid prediction for snap_scaffold_9-snap.1828-T1
Valid prediction for snap_scaffold_9-snap.1823-T1
Valid prediction for snap_scaffold_9-snap.1831-T1
Valid prediction for GlimmerHMM_glimmerT_22647-T1
Valid prediction for GlimmerHMM_glimmerT_22642-T1
Valid prediction for snap_scaffold_9-snap.1829-T1
Valid prediction for snap_scaffold_9-snap.1850-T1
Valid prediction for Augustus_model.g15062.t1
Valid prediction for snap_scaffold_9-snap.1836-T1
Valid prediction for GlimmerHMM_glimmerT_22644-T1
Valid prediction for GlimmerHMM_glimmerT_22636-T1
Valid prediction for GlimmerHMM_glimmerT_22639-T1
Valid prediction for snap_scaffold_9-snap.1842-T1
Valid prediction for snap_scaffold_9-snap.1819-T1
Valid prediction for snap_scaffold_9-snap.1837-T1
Valid prediction for GlimmerHMM_glimmerT_22645-T1
Valid prediction for snap_scaffold_9-snap.1832-T1
Valid prediction for Augustus_model.g15066.t1
Valid prediction for snap_scaffold_9-snap.1825-T1
Valid prediction for snap_scaffold_9-snap.1845-T1
Valid prediction for Augustus_model.g15069.t1
Valid prediction for Augustus_model.g15061.t1
Valid prediction for GlimmerHMM_glimmerT_22633-T1
Valid prediction for GlimmerHMM_glimmerT_22650-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_22638-T1
Valid prediction for Augustus_model.g15063.t1
Valid prediction for snap_scaffold_9-snap.1849-T1
Valid prediction for GlimmerHMM_glimmerT_22640-T1
Valid prediction for Augustus_model.g15065.t1
Valid prediction for GlimmerHMM_glimmerT_22635-T1
Valid prediction for GlimmerHMM_glimmerT_22641-T1
Valid prediction for Augustus_model.g15064.t1
Valid prediction for snap_scaffold_9-snap.1820-T1
Valid prediction for CodingQuarry_transcript_62253-T1
Valid prediction for snap_scaffold_9-snap.1851-T1
Valid prediction for snap_scaffold_9-snap.1822-T1
Valid prediction for snap_scaffold_9-snap.1843-T1
Valid prediction for snap_scaffold_9-snap.1844-T1
Valid prediction for GlimmerHMM_glimmerT_22634-T1
Valid prediction for GlimmerHMM_glimmerT_22651-T1
Valid prediction for snap_scaffold_9-snap.1841-T1
Valid prediction for snap_scaffold_9-snap.1824-T1
Valid prediction for snap_scaffold_9-snap.1840-T1
Valid prediction for snap_scaffold_9-snap.1848-T1
Valid prediction for snap_scaffold_9-snap.1839-T1
Valid prediction for snap_scaffold_9-snap.1834-T1
Valid prediction for GlimmerHMM_glimmerT_22643-T1
Valid prediction for snap_scaffold_9-snap.1827-T1
Valid prediction for snap_scaffold_9-snap.1830-T1
Valid prediction for GlimmerHMM_glimmerT_22637-T1
Valid prediction for snap_scaffold_9-snap.1846-T1
Valid prediction for Augustus_model.g15068.t1
Valid prediction for snap_scaffold_9-snap.1821-T1
Valid prediction for snap_scaffold_9-snap.1833-T1
Valid prediction for Augustus_model.g15067.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 128647, rend_intergenic: 124851  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 216569, rend_intergenic: 214047  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 272939
-exon list size: 193


building trellis

0.5    
1.0    
1.5    
2.1    
2.6    
3.1    
3.6    
4.1    
4.6    
5.1    
5.6    
6.2    
6.7    
7.2    
7.7    
8.2    
8.7    
9.2    
9.7    
10.3    
10.8    
11.3    
11.8    
12.3    
12.8    
13.3    
13.8    
14.4    
14.9    
15.4    
15.9    
16.4    
16.9    
17.4    
17.9    
18.5    
19.0    
19.5    
20.0    
20.5    
21.0    
21.5    
22.1    
22.6    
23.1    
23.6    
24.1    
24.6    
25.1    
25.6    
26.2    
26.7    
27.2    
27.7    
28.2    
28.7    
29.2    
29.7    
30.3    
30.8    
31.3    
31.8    
32.3    
32.8    
33.3    
33.8    
34.4    
34.9    
35.4    
35.9    
36.4    
36.9    
37.4    
37.9    
38.5    
39.0    
39.5    
40.0    
40.5    
41.0    
41.5    
42.1    
42.6    
43.1    
43.6    
44.1    
44.6    
45.1    
45.6    
46.2    
46.7    
47.2    
47.7    
48.2    
48.7    
49.2    
49.7    
50.3    
50.8    
51.3    
51.8    
52.3    
52.8    
53.3    
53.8    
54.4    
54.9    
55.4    
55.9    
56.4    
56.9    
57.4    
57.9    
58.5    
59.0    
59.5    
60.0    
60.5    
61.0    
61.5    
62.1    
62.6    
63.1    
63.6    
64.1    
64.6    
65.1    
65.6    
66.2    
66.7    
67.2    
67.7    
68.2    
68.7    
69.2    
69.7    
70.3    
70.8    
71.3    
71.8    
72.3    
72.8    
73.3    
73.8    
74.4    
74.9    
75.4    
75.9    
76.4    
76.9    
77.4    
77.9    
78.5    
79.0    
79.5    
80.0    
80.5    
81.0    
81.5    
82.1    
82.6    
83.1    
83.6    
84.1    
84.6    
85.1    
85.6    
86.2    
86.7    
87.2    
87.7    
88.2    
88.7    
89.2    
89.7    
90.3    
90.8    
91.3    
91.8    
92.3    
92.8    
93.3    
93.8    
94.4    
94.9    
95.4    
95.9    
96.4    
96.9    
97.4    
97.9    
98.5    
99.0    
99.5    
-found 28 predictions from path traversal
Error with prediction: snap lend_intergenic: 128647, rend_intergenic: 124851  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 216569, rend_intergenic: 214047  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 16 predictions persist after filtering for low support