-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_9/scaffold_9_7395194-7552774

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_22488-T1
Valid prediction for snap_scaffold_9-snap.1543-T1
Valid prediction for GlimmerHMM_glimmerT_22471-T1
Valid prediction for snap_scaffold_9-snap.1584-T1
Valid prediction for GlimmerHMM_glimmerT_22485-T1
Valid prediction for Augustus_model.g14939.t1
Valid prediction for GlimmerHMM_glimmerT_22469-T1
Valid prediction for Augustus_model.g14940.t1
Valid prediction for GlimmerHMM_glimmerT_22476-T1
Valid prediction for Augustus_model.g14935.t1
Valid prediction for Augustus_model.g14933.t1
Valid prediction for GlimmerHMM_glimmerT_22470-T1
Valid prediction for GlimmerHMM_glimmerT_22465-T1
Valid prediction for GlimmerHMM_glimmerT_22486-T1
Valid prediction for snap_scaffold_9-snap.1568-T1
Valid prediction for snap_scaffold_9-snap.1539-T1
Valid prediction for GlimmerHMM_glimmerT_22464-T1
Valid prediction for snap_scaffold_9-snap.1553-T1
Valid prediction for snap_scaffold_9-snap.1557-T1
Valid prediction for snap_scaffold_9-snap.1572-T1
Valid prediction for snap_scaffold_9-snap.1566-T1
Valid prediction for snap_scaffold_9-snap.1555-T1
Valid prediction for snap_scaffold_9-snap.1556-T1
Valid prediction for GlimmerHMM_glimmerT_22460-T1
Valid prediction for GlimmerHMM_glimmerT_22474-T1
Valid prediction for snap_scaffold_9-snap.1579-T1
Valid prediction for snap_scaffold_9-snap.1541-T1
Valid prediction for GlimmerHMM_glimmerT_22456-T1
Valid prediction for Augustus_model.g14936.t1
Valid prediction for GlimmerHMM_glimmerT_22462-T1
Valid prediction for GlimmerHMM_glimmerT_22481-T1
Valid prediction for Augustus_model.g14945.t1
Valid prediction for GlimmerHMM_glimmerT_22457-T1
Valid prediction for snap_scaffold_9-snap.1552-T1
Valid prediction for GlimmerHMM_glimmerT_22455-T1
Valid prediction for snap_scaffold_9-snap.1562-T1
Valid prediction for GlimmerHMM_glimmerT_22490-T1
Valid prediction for GlimmerHMM_glimmerT_22472-T1
Valid prediction for snap_scaffold_9-snap.1538-T1
Valid prediction for snap_scaffold_9-snap.1559-T1
Valid prediction for GlimmerHMM_glimmerT_22492-T1
Valid prediction for GlimmerHMM_glimmerT_22466-T1
Valid prediction for Augustus_model.g14934.t1
Valid prediction for snap_scaffold_9-snap.1545-T1
Valid prediction for snap_scaffold_9-snap.1565-T1
Sorry, intron length (6) is less than minimum required (10)
Valid prediction for Augustus_model.g14937.t1
Valid prediction for snap_scaffold_9-snap.1583-T1
Valid prediction for GlimmerHMM_glimmerT_22463-T1
Valid prediction for GlimmerHMM_glimmerT_22458-T1
Valid prediction for GlimmerHMM_glimmerT_22459-T1
Valid prediction for snap_scaffold_9-snap.1582-T1
Valid prediction for snap_scaffold_9-snap.1547-T1
Valid prediction for GlimmerHMM_glimmerT_22483-T1
Valid prediction for GlimmerHMM_glimmerT_22475-T1
Valid prediction for GlimmerHMM_glimmerT_22487-T1
Valid prediction for GlimmerHMM_glimmerT_22461-T1
Valid prediction for snap_scaffold_9-snap.1548-T1
Valid prediction for snap_scaffold_9-snap.1564-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g14943.t1
Valid prediction for snap_scaffold_9-snap.1549-T1
Valid prediction for snap_scaffold_9-snap.1574-T1
Valid prediction for snap_scaffold_9-snap.1561-T1
Valid prediction for Augustus_model.g14941.t1
Valid prediction for snap_scaffold_9-snap.1536-T1
Valid prediction for GlimmerHMM_glimmerT_22477-T1
Valid prediction for GlimmerHMM_glimmerT_22473-T1
Valid prediction for snap_scaffold_9-snap.1567-T1
Valid prediction for snap_scaffold_9-snap.1560-T1
Valid prediction for GlimmerHMM_glimmerT_22480-T1
Valid prediction for snap_scaffold_9-snap.1558-T1
Valid prediction for snap_scaffold_9-snap.1551-T1
Valid prediction for GlimmerHMM_glimmerT_22484-T1
Valid prediction for snap_scaffold_9-snap.1544-T1
Valid prediction for GlimmerHMM_glimmerT_22491-T1
Valid prediction for Augustus_model.g14938.t1
Valid prediction for snap_scaffold_9-snap.1580-T1
Valid prediction for Augustus_model.g14942.t1
Valid prediction for snap_scaffold_9-snap.1569-T1
Valid prediction for snap_scaffold_9-snap.1571-T1
Valid prediction for GlimmerHMM_glimmerT_22482-T1
Valid prediction for GlimmerHMM_glimmerT_22489-T1
Valid prediction for snap_scaffold_9-snap.1546-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_22479-T1
Valid prediction for snap_scaffold_9-snap.1563-T1
Valid prediction for GlimmerHMM_glimmerT_22454-T1
Valid prediction for snap_scaffold_9-snap.1581-T1
Valid prediction for snap_scaffold_9-snap.1578-T1
Valid prediction for Augustus_model.g14932.t1
Valid prediction for snap_scaffold_9-snap.1577-T1
Valid prediction for GlimmerHMM_glimmerT_22468-T1
Valid prediction for Augustus_model.g14944.t1
Valid prediction for snap_scaffold_9-snap.1542-T1
Valid prediction for snap_scaffold_9-snap.1570-T1
Valid prediction for snap_scaffold_9-snap.1575-T1
Valid prediction for snap_scaffold_9-snap.1540-T1
Valid prediction for snap_scaffold_9-snap.1576-T1
Valid prediction for GlimmerHMM_glimmerT_22478-T1
Valid prediction for snap_scaffold_9-snap.1550-T1
Valid prediction for snap_scaffold_9-snap.1537-T1
Valid prediction for snap_scaffold_9-snap.1554-T1
Valid prediction for GlimmerHMM_glimmerT_22467-T1
Valid prediction for snap_scaffold_9-snap.1573-T1
Valid prediction for Augustus_model.g14931.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 11264, rend_intergenic: 6796  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 12538, rend_intergenic: 11868  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 16899, rend_intergenic: 12847  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 18555, rend_intergenic: 16909  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 22247, rend_intergenic: 18669  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 23640, rend_intergenic: 22732  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 26179, rend_intergenic: 23872  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 28424, rend_intergenic: 26567  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 40365, rend_intergenic: 28902  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 42539, rend_intergenic: 40911  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 59063, rend_intergenic: 46568  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 65243, rend_intergenic: 60029  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 65897, rend_intergenic: 65668  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 81098, rend_intergenic: 67707  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 82502, rend_intergenic: 81780  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 84006, rend_intergenic: 82680  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 86337, rend_intergenic: 84199  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 96530, rend_intergenic: 95487  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 103396, rend_intergenic: 102672  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 106303, rend_intergenic: 103847  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 112505, rend_intergenic: 108937  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 139160, rend_intergenic: 135217  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 151168, rend_intergenic: 142944  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: GlimmerHMM lend_intergenic: 117687, rend_intergenic: 117684  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 157581
-exon list size: 368


building trellis

0.3    
0.5    
0.8    
1.1    
1.4    
1.6    
1.9    
2.2    
2.4    
2.7    
3.0    
3.2    
3.5    
3.8    
4.1    
4.3    
4.6    
4.9    
5.1    
5.4    
5.7    
5.9    
6.2    
6.5    
6.8    
7.0    
7.3    
7.6    
7.8    
8.1    
8.4    
8.6    
8.9    
9.2    
9.5    
9.7    
10.0    
10.3    
10.5    
10.8    
11.1    
11.4    
11.6    
11.9    
12.2    
12.4    
12.7    
13.0    
13.2    
13.5    
13.8    
14.1    
14.3    
14.6    
14.9    
15.1    
15.4    
15.7    
15.9    
16.2    
16.5    
16.8    
17.0    
17.3    
17.6    
17.8    
18.1    
18.4    
18.6    
18.9    
19.2    
19.5    
19.7    
20.0    
20.3    
20.5    
20.8    
21.1    
21.4    
21.6    
21.9    
22.2    
22.4    
22.7    
23.0    
23.2    
23.5    
23.8    
24.1    
24.3    
24.6    
24.9    
25.1    
25.4    
25.7    
25.9    
26.2    
26.5    
26.8    
27.0    
27.3    
27.6    
27.8    
28.1    
28.4    
28.6    
28.9    
29.2    
29.5    
29.7    
30.0    
30.3    
30.5    
30.8    
31.1    
31.4    
31.6    
31.9    
32.2    
32.4    
32.7    
33.0    
33.2    
33.5    
33.8    
34.1    
34.3    
34.6    
34.9    
35.1    
35.4    
35.7    
35.9    
36.2    
36.5    
36.8    
37.0    
37.3    
37.6    
37.8    
38.1    
38.4    
38.6    
38.9    
39.2    
39.5    
39.7    
40.0    
40.3    
40.5    
40.8    
41.1    
41.4    
41.6    
41.9    
42.2    
42.4    
42.7    
43.0    
43.2    
43.5    
43.8    
44.1    
44.3    
44.6    
44.9    
45.1    
45.4    
45.7    
45.9    
46.2    
46.5    
46.8    
47.0    
47.3    
47.6    
47.8    
48.1    
48.4    
48.6    
48.9    
49.2    
49.5    
49.7    
50.0    
50.3    
50.5    
50.8    
51.1    
51.4    
51.6    
51.9    
52.2    
52.4    
52.7    
53.0    
53.2    
53.5    
53.8    
54.1    
54.3    
54.6    
54.9    
55.1    
55.4    
55.7    
55.9    
56.2    
56.5    
56.8    
57.0    
57.3    
57.6    
57.8    
58.1    
58.4    
58.6    
58.9    
59.2    
59.5    
59.7    
60.0    
60.3    
60.5    
60.8    
61.1    
61.4    
61.6    
61.9    
62.2    
62.4    
62.7    
63.0    
63.2    
63.5    
63.8    
64.1    
64.3    
64.6    
64.9    
65.1    
65.4    
65.7    
65.9    
66.2    
66.5    
66.8    
67.0    
67.3    
67.6    
67.8    
68.1    
68.4    
68.6    
68.9    
69.2    
69.5    
69.7    
70.0    
70.3    
70.5    
70.8    
71.1    
71.4    
71.6    
71.9    
72.2    
72.4    
72.7    
73.0    
73.2    
73.5    
73.8    
74.1    
74.3    
74.6    
74.9    
75.1    
75.4    
75.7    
75.9    
76.2    
76.5    
76.8    
77.0    
77.3    
77.6    
77.8    
78.1    
78.4    
78.6    
78.9    
79.2    
79.5    
79.7    
80.0    
80.3    
80.5    
80.8    
81.1    
81.4    
81.6    
81.9    
82.2    
82.4    
82.7    
83.0    
83.2    
83.5    
83.8    
84.1    
84.3    
84.6    
84.9    
85.1    
85.4    
85.7    
85.9    
86.2    
86.5    
86.8    
87.0    
87.3    
87.6    
87.8    
88.1    
88.4    
88.6    
88.9    
89.2    
89.5    
89.7    
90.0    
90.3    
90.5    
90.8    
91.1    
91.4    
91.6    
91.9    
92.2    
92.4    
92.7    
93.0    
93.2    
93.5    
93.8    
94.1    
94.3    
94.6    
94.9    
95.1    
95.4    
95.7    
95.9    
96.2    
96.5    
96.8    
97.0    
97.3    
97.6    
97.8    
98.1    
98.4    
98.6    
98.9    
99.2    
99.5    
99.7    
-found 36 predictions from path traversal
Error with prediction: snap lend_intergenic: 11264, rend_intergenic: 6796  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 12538, rend_intergenic: 11868  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 16899, rend_intergenic: 12847  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 18555, rend_intergenic: 16909  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 22247, rend_intergenic: 18669  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 23640, rend_intergenic: 22732  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 26179, rend_intergenic: 23872  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 28424, rend_intergenic: 26567  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 40365, rend_intergenic: 28902  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 42539, rend_intergenic: 40911  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 59063, rend_intergenic: 46568  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 65243, rend_intergenic: 60029  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 65897, rend_intergenic: 65668  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 81098, rend_intergenic: 67707  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 82502, rend_intergenic: 81780  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 84006, rend_intergenic: 82680  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 86337, rend_intergenic: 84199  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 96530, rend_intergenic: 95487  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 103396, rend_intergenic: 102672  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 106303, rend_intergenic: 103847  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 112505, rend_intergenic: 108937  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 139160, rend_intergenic: 135217  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 151168, rend_intergenic: 142944  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: GlimmerHMM lend_intergenic: 117687, rend_intergenic: 117684  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 20 predictions persist after filtering for low support