-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_9/scaffold_9_7234902-7397657

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_22447-T1
Valid prediction for Augustus_model.g14920.t1
Valid prediction for Augustus_model.g14922.t1
Valid prediction for GlimmerHMM_glimmerT_22442-T1
Valid prediction for snap_scaffold_9-snap.1531-T1
Valid prediction for snap_scaffold_9-snap.1504-T1
Valid prediction for snap_scaffold_9-snap.1512-T1
Valid prediction for Augustus_model.g14930.t1
Valid prediction for snap_scaffold_9-snap.1519-T1
Valid prediction for GlimmerHMM_glimmerT_22450-T1
Valid prediction for snap_scaffold_9-snap.1503-T1
Valid prediction for GlimmerHMM_glimmerT_22436-T1
Valid prediction for Augustus_model.g14919.t1
Valid prediction for snap_scaffold_9-snap.1513-T1
Valid prediction for GlimmerHMM_glimmerT_22452-T1
Valid prediction for GlimmerHMM_glimmerT_22430-T1
Valid prediction for snap_scaffold_9-snap.1535-T1
Valid prediction for snap_scaffold_9-snap.1524-T1
Valid prediction for snap_scaffold_9-snap.1523-T1
Valid prediction for Augustus_model.g14921.t1
Valid prediction for GlimmerHMM_glimmerT_22432-T1
Valid prediction for Augustus_model.g14917.t1
Valid prediction for snap_scaffold_9-snap.1521-T1
Valid prediction for snap_scaffold_9-snap.1506-T1
Valid prediction for snap_scaffold_9-snap.1528-T1
Valid prediction for Augustus_model.g14918.t1
Valid prediction for snap_scaffold_9-snap.1502-T1
Valid prediction for snap_scaffold_9-snap.1526-T1
Valid prediction for snap_scaffold_9-snap.1511-T1
Valid prediction for GlimmerHMM_glimmerT_22444-T1
Valid prediction for snap_scaffold_9-snap.1534-T1
Valid prediction for Augustus_model.g14924.t1
Valid prediction for snap_scaffold_9-snap.1518-T1
Valid prediction for GlimmerHMM_glimmerT_22437-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_9-snap.1500-T1
Valid prediction for Augustus_model.g14926.t1
Valid prediction for snap_scaffold_9-snap.1522-T1
Valid prediction for Augustus_model.g14913.t1
Valid prediction for snap_scaffold_9-snap.1499-T1
Valid prediction for snap_scaffold_9-snap.1497-T1
Valid prediction for Augustus_model.g14914.t1
Valid prediction for snap_scaffold_9-snap.1501-T1
Valid prediction for snap_scaffold_9-snap.1507-T1
Valid prediction for Augustus_model.g14928.t1
Valid prediction for snap_scaffold_9-snap.1530-T1
Valid prediction for Augustus_model.g14925.t1
Valid prediction for snap_scaffold_9-snap.1514-T1
Valid prediction for GlimmerHMM_glimmerT_22433-T1
Valid prediction for Augustus_model.g14916.t1
Valid prediction for GlimmerHMM_glimmerT_22453-T1
Valid prediction for GlimmerHMM_glimmerT_22441-T1
Valid prediction for snap_scaffold_9-snap.1515-T1
Valid prediction for snap_scaffold_9-snap.1517-T1
Valid prediction for GlimmerHMM_glimmerT_22440-T1
Valid prediction for GlimmerHMM_glimmerT_22446-T1
Valid prediction for GlimmerHMM_glimmerT_22448-T1
Valid prediction for GlimmerHMM_glimmerT_22443-T1
Valid prediction for GlimmerHMM_glimmerT_22435-T1
Valid prediction for snap_scaffold_9-snap.1525-T1
Valid prediction for snap_scaffold_9-snap.1527-T1
Valid prediction for snap_scaffold_9-snap.1536-T1
Valid prediction for GlimmerHMM_glimmerT_22445-T1
Valid prediction for Augustus_model.g14923.t1
Valid prediction for snap_scaffold_9-snap.1529-T1
Valid prediction for snap_scaffold_9-snap.1516-T1
Valid prediction for Augustus_model.g14915.t1
Valid prediction for GlimmerHMM_glimmerT_22434-T1
Valid prediction for GlimmerHMM_glimmerT_22451-T1
Valid prediction for Augustus_model.g14929.t1
Valid prediction for snap_scaffold_9-snap.1509-T1
Valid prediction for snap_scaffold_9-snap.1532-T1
Valid prediction for snap_scaffold_9-snap.1505-T1
Valid prediction for GlimmerHMM_glimmerT_22439-T1
Valid prediction for snap_scaffold_9-snap.1533-T1
Valid prediction for snap_scaffold_9-snap.1520-T1
Valid prediction for Augustus_model.g14927.t1
Valid prediction for snap_scaffold_9-snap.1508-T1
Valid prediction for GlimmerHMM_glimmerT_22431-T1
Valid prediction for snap_scaffold_9-snap.1498-T1
Valid prediction for GlimmerHMM_glimmerT_22449-T1
Valid prediction for GlimmerHMM_glimmerT_22438-T1
Valid prediction for snap_scaffold_9-snap.1510-T1
Sorry, intron length (3) is less than minimum required (10)

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 33942, rend_intergenic: 23409  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45194, rend_intergenic: 42213  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 49319, rend_intergenic: 45267  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 68281, rend_intergenic: 52072  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 70109, rend_intergenic: 68552  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 103696, rend_intergenic: 95011  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 107040, rend_intergenic: 105366  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 110337, rend_intergenic: 109990  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 116721, rend_intergenic: 110637  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 117831, rend_intergenic: 116948  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 129285, rend_intergenic: 118155  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 137755, rend_intergenic: 133867  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 143823, rend_intergenic: 142263  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 147152, rend_intergenic: 143973  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 160886, rend_intergenic: 148722  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 162756
-exon list size: 382


building trellis

0.3    
0.5    
0.8    
1.0    
1.3    
1.6    
1.8    
2.1    
2.3    
2.6    
2.9    
3.1    
3.4    
3.6    
3.9    
4.2    
4.4    
4.7    
4.9    
5.2    
5.5    
5.7    
6.0    
6.2    
6.5    
6.8    
7.0    
7.3    
7.6    
7.8    
8.1    
8.3    
8.6    
8.9    
9.1    
9.4    
9.6    
9.9    
10.2    
10.4    
10.7    
10.9    
11.2    
11.5    
11.7    
12.0    
12.2    
12.5    
12.8    
13.0    
13.3    
13.5    
13.8    
14.1    
14.3    
14.6    
14.8    
15.1    
15.4    
15.6    
15.9    
16.1    
16.4    
16.7    
16.9    
17.2    
17.4    
17.7    
18.0    
18.2    
18.5    
18.8    
19.0    
19.3    
19.5    
19.8    
20.1    
20.3    
20.6    
20.8    
21.1    
21.4    
21.6    
21.9    
22.1    
22.4    
22.7    
22.9    
23.2    
23.4    
23.7    
24.0    
24.2    
24.5    
24.7    
25.0    
25.3    
25.5    
25.8    
26.0    
26.3    
26.6    
26.8    
27.1    
27.3    
27.6    
27.9    
28.1    
28.4    
28.6    
28.9    
29.2    
29.4    
29.7    
29.9    
30.2    
30.5    
30.7    
31.0    
31.2    
31.5    
31.8    
32.0    
32.3    
32.6    
32.8    
33.1    
33.3    
33.6    
33.9    
34.1    
34.4    
34.6    
34.9    
35.2    
35.4    
35.7    
35.9    
36.2    
36.5    
36.7    
37.0    
37.2    
37.5    
37.8    
38.0    
38.3    
38.5    
38.8    
39.1    
39.3    
39.6    
39.8    
40.1    
40.4    
40.6    
40.9    
41.1    
41.4    
41.7    
41.9    
42.2    
42.4    
42.7    
43.0    
43.2    
43.5    
43.8    
44.0    
44.3    
44.5    
44.8    
45.1    
45.3    
45.6    
45.8    
46.1    
46.4    
46.6    
46.9    
47.1    
47.4    
47.7    
47.9    
48.2    
48.4    
48.7    
49.0    
49.2    
49.5    
49.7    
50.0    
50.3    
50.5    
50.8    
51.0    
51.3    
51.6    
51.8    
52.1    
52.3    
52.6    
52.9    
53.1    
53.4    
53.6    
53.9    
54.2    
54.4    
54.7    
54.9    
55.2    
55.5    
55.7    
56.0    
56.2    
56.5    
56.8    
57.0    
57.3    
57.6    
57.8    
58.1    
58.3    
58.6    
58.9    
59.1    
59.4    
59.6    
59.9    
60.2    
60.4    
60.7    
60.9    
61.2    
61.5    
61.7    
62.0    
62.2    
62.5    
62.8    
63.0    
63.3    
63.5    
63.8    
64.1    
64.3    
64.6    
64.8    
65.1    
65.4    
65.6    
65.9    
66.1    
66.4    
66.7    
66.9    
67.2    
67.4    
67.7    
68.0    
68.2    
68.5    
68.8    
69.0    
69.3    
69.5    
69.8    
70.1    
70.3    
70.6    
70.8    
71.1    
71.4    
71.6    
71.9    
72.1    
72.4    
72.7    
72.9    
73.2    
73.4    
73.7    
74.0    
74.2    
74.5    
74.7    
75.0    
75.3    
75.5    
75.8    
76.0    
76.3    
76.6    
76.8    
77.1    
77.3    
77.6    
77.9    
78.1    
78.4    
78.6    
78.9    
79.2    
79.4    
79.7    
79.9    
80.2    
80.5    
80.7    
81.0    
81.2    
81.5    
81.8    
82.0    
82.3    
82.6    
82.8    
83.1    
83.3    
83.6    
83.9    
84.1    
84.4    
84.6    
84.9    
85.2    
85.4    
85.7    
85.9    
86.2    
86.5    
86.7    
87.0    
87.2    
87.5    
87.8    
88.0    
88.3    
88.5    
88.8    
89.1    
89.3    
89.6    
89.8    
90.1    
90.4    
90.6    
90.9    
91.1    
91.4    
91.7    
91.9    
92.2    
92.4    
92.7    
93.0    
93.2    
93.5    
93.8    
94.0    
94.3    
94.5    
94.8    
95.1    
95.3    
95.6    
95.8    
96.1    
96.4    
96.6    
96.9    
97.1    
97.4    
97.7    
97.9    
98.2    
98.4    
98.7    
99.0    
99.2    
99.5    
99.7    
-found 28 predictions from path traversal
Error with prediction: snap lend_intergenic: 33942, rend_intergenic: 23409  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45194, rend_intergenic: 42213  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 49319, rend_intergenic: 45267  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 68281, rend_intergenic: 52072  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 70109, rend_intergenic: 68552  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 103696, rend_intergenic: 95011  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 107040, rend_intergenic: 105366  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 110337, rend_intergenic: 109990  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 116721, rend_intergenic: 110637  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 117831, rend_intergenic: 116948  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 129285, rend_intergenic: 118155  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 137755, rend_intergenic: 133867  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 143823, rend_intergenic: 142263  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 147152, rend_intergenic: 143973  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 160886, rend_intergenic: 148722  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 20 predictions persist after filtering for low support