-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_9/scaffold_9_7069527-7236616

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_9-snap.1466-T1
Valid prediction for snap_scaffold_9-snap.1452-T1
Valid prediction for snap_scaffold_9-snap.1457-T1
Valid prediction for snap_scaffold_9-snap.1483-T1
Valid prediction for Augustus_model.g14910.t1
Valid prediction for GlimmerHMM_glimmerT_22398-T1
Valid prediction for snap_scaffold_9-snap.1473-T1
Valid prediction for snap_scaffold_9-snap.1485-T1
Valid prediction for Augustus_model.g14900.t1
Valid prediction for snap_scaffold_9-snap.1459-T1
Valid prediction for GlimmerHMM_glimmerT_22419-T1
Valid prediction for GlimmerHMM_glimmerT_22413-T1
Valid prediction for snap_scaffold_9-snap.1486-T1
Valid prediction for GlimmerHMM_glimmerT_22401-T1
Valid prediction for GlimmerHMM_glimmerT_22425-T1
Valid prediction for GlimmerHMM_glimmerT_22412-T1
Valid prediction for snap_scaffold_9-snap.1477-T1
Valid prediction for snap_scaffold_9-snap.1476-T1
Valid prediction for GlimmerHMM_glimmerT_22421-T1
Valid prediction for snap_scaffold_9-snap.1468-T1
Valid prediction for snap_scaffold_9-snap.1494-T1
Valid prediction for Augustus_model.g14905.t1
Valid prediction for GlimmerHMM_glimmerT_22409-T1
Valid prediction for snap_scaffold_9-snap.1489-T1
Valid prediction for GlimmerHMM_glimmerT_22426-T1
Valid prediction for GlimmerHMM_glimmerT_22402-T1
Valid prediction for Augustus_model.g14909.t1
Valid prediction for GlimmerHMM_glimmerT_22427-T1
Valid prediction for snap_scaffold_9-snap.1490-T1
Valid prediction for snap_scaffold_9-snap.1465-T1
Valid prediction for GlimmerHMM_glimmerT_22422-T1
Valid prediction for GlimmerHMM_glimmerT_22414-T1
Valid prediction for snap_scaffold_9-snap.1461-T1
Valid prediction for snap_scaffold_9-snap.1493-T1
Valid prediction for snap_scaffold_9-snap.1455-T1
Valid prediction for snap_scaffold_9-snap.1478-T1
Valid prediction for Augustus_model.g14908.t1
Valid prediction for snap_scaffold_9-snap.1481-T1
Valid prediction for snap_scaffold_9-snap.1470-T1
Sorry, intron length (5) is less than minimum required (10)
Valid prediction for Augustus_model.g14906.t1
Valid prediction for GlimmerHMM_glimmerT_22416-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_22418-T1
Valid prediction for Augustus_model.g14899.t1
Valid prediction for Augustus_model.g14912.t1
Valid prediction for snap_scaffold_9-snap.1460-T1
Valid prediction for GlimmerHMM_glimmerT_22424-T1
Valid prediction for snap_scaffold_9-snap.1495-T1
Valid prediction for snap_scaffold_9-snap.1487-T1
Valid prediction for GlimmerHMM_glimmerT_22407-T1
Valid prediction for GlimmerHMM_glimmerT_22403-T1
Valid prediction for GlimmerHMM_glimmerT_22406-T1
Valid prediction for snap_scaffold_9-snap.1451-T1
Valid prediction for GlimmerHMM_glimmerT_22420-T1
Valid prediction for snap_scaffold_9-snap.1491-T1
Valid prediction for snap_scaffold_9-snap.1467-T1
Valid prediction for snap_scaffold_9-snap.1484-T1
Valid prediction for snap_scaffold_9-snap.1475-T1
Valid prediction for GlimmerHMM_glimmerT_22423-T1
Valid prediction for Augustus_model.g14898.t1
Valid prediction for snap_scaffold_9-snap.1474-T1
Valid prediction for snap_scaffold_9-snap.1480-T1
Valid prediction for snap_scaffold_9-snap.1469-T1
Valid prediction for snap_scaffold_9-snap.1482-T1
Valid prediction for snap_scaffold_9-snap.1471-T1
Valid prediction for GlimmerHMM_glimmerT_22429-T1
Valid prediction for GlimmerHMM_glimmerT_22405-T1
Valid prediction for snap_scaffold_9-snap.1462-T1
Valid prediction for GlimmerHMM_glimmerT_22399-T1
Valid prediction for Augustus_model.g14896.t1
Valid prediction for Augustus_model.g14897.t1
Valid prediction for snap_scaffold_9-snap.1479-T1
Valid prediction for GlimmerHMM_glimmerT_22404-T1
Valid prediction for snap_scaffold_9-snap.1472-T1
Valid prediction for GlimmerHMM_glimmerT_22411-T1
Valid prediction for snap_scaffold_9-snap.1488-T1
Valid prediction for Augustus_model.g14911.t1
Valid prediction for snap_scaffold_9-snap.1492-T1
Valid prediction for snap_scaffold_9-snap.1458-T1
Valid prediction for Augustus_model.g14904.t1
Valid prediction for Augustus_model.g14907.t1
Valid prediction for snap_scaffold_9-snap.1453-T1
Valid prediction for GlimmerHMM_glimmerT_22417-T1
Valid prediction for snap_scaffold_9-snap.1456-T1
Valid prediction for GlimmerHMM_glimmerT_22428-T1
Valid prediction for snap_scaffold_9-snap.1454-T1
Valid prediction for snap_scaffold_9-snap.1464-T1
Valid prediction for GlimmerHMM_glimmerT_22408-T1
Valid prediction for GlimmerHMM_glimmerT_22410-T1
Valid prediction for snap_scaffold_9-snap.1463-T1
Valid prediction for Augustus_model.g14903.t1
Valid prediction for GlimmerHMM_glimmerT_22415-T1
Valid prediction for GlimmerHMM_glimmerT_22400-T1
Valid prediction for Augustus_model.g14902.t1
Valid prediction for Augustus_model.g14901.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 18191, rend_intergenic: 15715  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 19806, rend_intergenic: 18869  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 33626, rend_intergenic: 31688  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 44277, rend_intergenic: 43840  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 56456, rend_intergenic: 52843  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 64254, rend_intergenic: 61084  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 73896, rend_intergenic: 69348  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 77681, rend_intergenic: 75360  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 79680, rend_intergenic: 77697  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 85298, rend_intergenic: 80089  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 97117, rend_intergenic: 91091  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 101514, rend_intergenic: 97935  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 108933, rend_intergenic: 101852  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 117649, rend_intergenic: 112709  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 118564, rend_intergenic: 117897  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 136268, rend_intergenic: 125648  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 144295, rend_intergenic: 139476  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 159366, rend_intergenic: 145911  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 164782, rend_intergenic: 159553  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 167090
-exon list size: 341


building trellis

0.3    
0.6    
0.9    
1.2    
1.5    
1.7    
2.0    
2.3    
2.6    
2.9    
3.2    
3.5    
3.8    
4.1    
4.4    
4.7    
5.0    
5.2    
5.5    
5.8    
6.1    
6.4    
6.7    
7.0    
7.3    
7.6    
7.9    
8.2    
8.5    
8.7    
9.0    
9.3    
9.6    
9.9    
10.2    
10.5    
10.8    
11.1    
11.4    
11.7    
12.0    
12.2    
12.5    
12.8    
13.1    
13.4    
13.7    
14.0    
14.3    
14.6    
14.9    
15.2    
15.5    
15.7    
16.0    
16.3    
16.6    
16.9    
17.2    
17.5    
17.8    
18.1    
18.4    
18.7    
19.0    
19.2    
19.5    
19.8    
20.1    
20.4    
20.7    
21.0    
21.3    
21.6    
21.9    
22.2    
22.4    
22.7    
23.0    
23.3    
23.6    
23.9    
24.2    
24.5    
24.8    
25.1    
25.4    
25.7    
25.9    
26.2    
26.5    
26.8    
27.1    
27.4    
27.7    
28.0    
28.3    
28.6    
28.9    
29.2    
29.4    
29.7    
30.0    
30.3    
30.6    
30.9    
31.2    
31.5    
31.8    
32.1    
32.4    
32.7    
32.9    
33.2    
33.5    
33.8    
34.1    
34.4    
34.7    
35.0    
35.3    
35.6    
35.9    
36.2    
36.4    
36.7    
37.0    
37.3    
37.6    
37.9    
38.2    
38.5    
38.8    
39.1    
39.4    
39.7    
39.9    
40.2    
40.5    
40.8    
41.1    
41.4    
41.7    
42.0    
42.3    
42.6    
42.9    
43.1    
43.4    
43.7    
44.0    
44.3    
44.6    
44.9    
45.2    
45.5    
45.8    
46.1    
46.4    
46.6    
46.9    
47.2    
47.5    
47.8    
48.1    
48.4    
48.7    
49.0    
49.3    
49.6    
49.9    
50.1    
50.4    
50.7    
51.0    
51.3    
51.6    
51.9    
52.2    
52.5    
52.8    
53.1    
53.4    
53.6    
53.9    
54.2    
54.5    
54.8    
55.1    
55.4    
55.7    
56.0    
56.3    
56.6    
56.9    
57.1    
57.4    
57.7    
58.0    
58.3    
58.6    
58.9    
59.2    
59.5    
59.8    
60.1    
60.3    
60.6    
60.9    
61.2    
61.5    
61.8    
62.1    
62.4    
62.7    
63.0    
63.3    
63.6    
63.8    
64.1    
64.4    
64.7    
65.0    
65.3    
65.6    
65.9    
66.2    
66.5    
66.8    
67.1    
67.3    
67.6    
67.9    
68.2    
68.5    
68.8    
69.1    
69.4    
69.7    
70.0    
70.3    
70.6    
70.8    
71.1    
71.4    
71.7    
72.0    
72.3    
72.6    
72.9    
73.2    
73.5    
73.8    
74.1    
74.3    
74.6    
74.9    
75.2    
75.5    
75.8    
76.1    
76.4    
76.7    
77.0    
77.3    
77.6    
77.8    
78.1    
78.4    
78.7    
79.0    
79.3    
79.6    
79.9    
80.2    
80.5    
80.8    
81.0    
81.3    
81.6    
81.9    
82.2    
82.5    
82.8    
83.1    
83.4    
83.7    
84.0    
84.3    
84.5    
84.8    
85.1    
85.4    
85.7    
86.0    
86.3    
86.6    
86.9    
87.2    
87.5    
87.8    
88.0    
88.3    
88.6    
88.9    
89.2    
89.5    
89.8    
90.1    
90.4    
90.7    
91.0    
91.3    
91.5    
91.8    
92.1    
92.4    
92.7    
93.0    
93.3    
93.6    
93.9    
94.2    
94.5    
94.8    
95.0    
95.3    
95.6    
95.9    
96.2    
96.5    
96.8    
97.1    
97.4    
97.7    
98.0    
98.3    
98.5    
98.8    
99.1    
99.4    
99.7    
-found 27 predictions from path traversal
Error with prediction: snap lend_intergenic: 18191, rend_intergenic: 15715  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 19806, rend_intergenic: 18869  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 33626, rend_intergenic: 31688  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 44277, rend_intergenic: 43840  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 56456, rend_intergenic: 52843  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 64254, rend_intergenic: 61084  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 73896, rend_intergenic: 69348  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 77681, rend_intergenic: 75360  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 79680, rend_intergenic: 77697  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 85298, rend_intergenic: 80089  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 97117, rend_intergenic: 91091  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 101514, rend_intergenic: 97935  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 108933, rend_intergenic: 101852  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 117649, rend_intergenic: 112709  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 118564, rend_intergenic: 117897  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 136268, rend_intergenic: 125648  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 144295, rend_intergenic: 139476  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 159366, rend_intergenic: 145911  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 164782, rend_intergenic: 159553  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 11 predictions persist after filtering for low support