-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_9/scaffold_9_6018910-6149449

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_9-snap.1273-T1
Valid prediction for snap_scaffold_9-snap.1278-T1
Valid prediction for GlimmerHMM_glimmerT_22262-T1
Valid prediction for snap_scaffold_9-snap.1268-T1
Valid prediction for Augustus_model.g14806.t1
Valid prediction for snap_scaffold_9-snap.1266-T1
Valid prediction for snap_scaffold_9-snap.1275-T1
Valid prediction for snap_scaffold_9-snap.1293-T1
Valid prediction for Augustus_model.g14813.t1
Valid prediction for snap_scaffold_9-snap.1283-T1
Valid prediction for Augustus_model.g14803.t1
Valid prediction for snap_scaffold_9-snap.1289-T1
Valid prediction for GlimmerHMM_glimmerT_22274-T1
Valid prediction for GlimmerHMM_glimmerT_22264-T1
Valid prediction for Augustus_model.g14805.t1
Valid prediction for GlimmerHMM_glimmerT_22265-T1
Valid prediction for Augustus_model.g14804.t1
Valid prediction for snap_scaffold_9-snap.1280-T1
Valid prediction for snap_scaffold_9-snap.1276-T1
Valid prediction for Augustus_model.g14807.t1
Valid prediction for GlimmerHMM_glimmerT_22269-T1
Valid prediction for GlimmerHMM_glimmerT_22271-T1
Valid prediction for Augustus_model.g14802.t1
Valid prediction for GlimmerHMM_glimmerT_22278-T1
Valid prediction for snap_scaffold_9-snap.1291-T1
Valid prediction for snap_scaffold_9-snap.1282-T1
Valid prediction for snap_scaffold_9-snap.1285-T1
Valid prediction for GlimmerHMM_glimmerT_22281-T1
Valid prediction for CodingQuarry_transcript_62194-T1
Valid prediction for snap_scaffold_9-snap.1269-T1
Valid prediction for snap_scaffold_9-snap.1294-T1
Valid prediction for GlimmerHMM_glimmerT_22283-T1
Valid prediction for snap_scaffold_9-snap.1286-T1
Valid prediction for HiQ_model.g14812.t1
Valid prediction for GlimmerHMM_glimmerT_22267-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_9-snap.1267-T1
Valid prediction for snap_scaffold_9-snap.1295-T1
Valid prediction for GlimmerHMM_glimmerT_22263-T1
Valid prediction for snap_scaffold_9-snap.1270-T1
Valid prediction for GlimmerHMM_glimmerT_22277-T1
Valid prediction for GlimmerHMM_glimmerT_22276-T1
Valid prediction for snap_scaffold_9-snap.1290-T1
Valid prediction for GlimmerHMM_glimmerT_22280-T1
Valid prediction for snap_scaffold_9-snap.1279-T1
Valid prediction for snap_scaffold_9-snap.1288-T1
Valid prediction for snap_scaffold_9-snap.1271-T1
Valid prediction for snap_scaffold_9-snap.1277-T1
Valid prediction for GlimmerHMM_glimmerT_22279-T1
Valid prediction for snap_scaffold_9-snap.1272-T1
Valid prediction for Augustus_model.g14811.t1
Valid prediction for snap_scaffold_9-snap.1274-T1
Valid prediction for snap_scaffold_9-snap.1299-T1
Valid prediction for GlimmerHMM_glimmerT_22270-T1
Valid prediction for Augustus_model.g14800.t1
Valid prediction for GlimmerHMM_glimmerT_22261-T1
Valid prediction for Augustus_model.g14809.t1
Valid prediction for snap_scaffold_9-snap.1281-T1
Valid prediction for Augustus_model.g14808.t1
Valid prediction for GlimmerHMM_glimmerT_22273-T1
Valid prediction for GlimmerHMM_glimmerT_22266-T1
Valid prediction for snap_scaffold_9-snap.1292-T1
Valid prediction for snap_scaffold_9-snap.1297-T1
Valid prediction for snap_scaffold_9-snap.1296-T1
Valid prediction for GlimmerHMM_glimmerT_22282-T1
Valid prediction for GlimmerHMM_glimmerT_22272-T1
Valid prediction for Augustus_model.g14810.t1
Valid prediction for GlimmerHMM_glimmerT_22268-T1
Valid prediction for snap_scaffold_9-snap.1284-T1
Valid prediction for snap_scaffold_9-snap.1287-T1
Valid prediction for snap_scaffold_9-snap.1265-T1
Valid prediction for GlimmerHMM_glimmerT_22275-T1
Valid prediction for Augustus_model.g14799.t1
Valid prediction for GlimmerHMM_glimmerT_22284-T1
Valid prediction for Augustus_model.g14801.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4144, rend_intergenic: 2726  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 33002, rend_intergenic: 31290  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34694, rend_intergenic: 33168  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 36145, rend_intergenic: 35547  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 54865, rend_intergenic: 52307  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 65678, rend_intergenic: 62807  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 73380, rend_intergenic: 70119  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 90965, rend_intergenic: 76727  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 100177, rend_intergenic: 98891  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 101170, rend_intergenic: 100392  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 118090, rend_intergenic: 114277  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 130540
-exon list size: 258


building trellis

0.4    
0.8    
1.2    
1.5    
1.9    
2.3    
2.7    
3.1    
3.5    
3.8    
4.2    
4.6    
5.0    
5.4    
5.8    
6.2    
6.5    
6.9    
7.3    
7.7    
8.1    
8.5    
8.8    
9.2    
9.6    
10.0    
10.4    
10.8    
11.2    
11.5    
11.9    
12.3    
12.7    
13.1    
13.5    
13.8    
14.2    
14.6    
15.0    
15.4    
15.8    
16.2    
16.5    
16.9    
17.3    
17.7    
18.1    
18.5    
18.8    
19.2    
19.6    
20.0    
20.4    
20.8    
21.2    
21.5    
21.9    
22.3    
22.7    
23.1    
23.5    
23.8    
24.2    
24.6    
25.0    
25.4    
25.8    
26.2    
26.5    
26.9    
27.3    
27.7    
28.1    
28.5    
28.8    
29.2    
29.6    
30.0    
30.4    
30.8    
31.2    
31.5    
31.9    
32.3    
32.7    
33.1    
33.5    
33.8    
34.2    
34.6    
35.0    
35.4    
35.8    
36.2    
36.5    
36.9    
37.3    
37.7    
38.1    
38.5    
38.8    
39.2    
39.6    
40.0    
40.4    
40.8    
41.2    
41.5    
41.9    
42.3    
42.7    
43.1    
43.5    
43.8    
44.2    
44.6    
45.0    
45.4    
45.8    
46.2    
46.5    
46.9    
47.3    
47.7    
48.1    
48.5    
48.8    
49.2    
49.6    
50.0    
50.4    
50.8    
51.2    
51.5    
51.9    
52.3    
52.7    
53.1    
53.5    
53.8    
54.2    
54.6    
55.0    
55.4    
55.8    
56.2    
56.5    
56.9    
57.3    
57.7    
58.1    
58.5    
58.8    
59.2    
59.6    
60.0    
60.4    
60.8    
61.2    
61.5    
61.9    
62.3    
62.7    
63.1    
63.5    
63.8    
64.2    
64.6    
65.0    
65.4    
65.8    
66.2    
66.5    
66.9    
67.3    
67.7    
68.1    
68.5    
68.8    
69.2    
69.6    
70.0    
70.4    
70.8    
71.2    
71.5    
71.9    
72.3    
72.7    
73.1    
73.5    
73.8    
74.2    
74.6    
75.0    
75.4    
75.8    
76.2    
76.5    
76.9    
77.3    
77.7    
78.1    
78.5    
78.8    
79.2    
79.6    
80.0    
80.4    
80.8    
81.2    
81.5    
81.9    
82.3    
82.7    
83.1    
83.5    
83.8    
84.2    
84.6    
85.0    
85.4    
85.8    
86.2    
86.5    
86.9    
87.3    
87.7    
88.1    
88.5    
88.8    
89.2    
89.6    
90.0    
90.4    
90.8    
91.2    
91.5    
91.9    
92.3    
92.7    
93.1    
93.5    
93.8    
94.2    
94.6    
95.0    
95.4    
95.8    
96.2    
96.5    
96.9    
97.3    
97.7    
98.1    
98.5    
98.8    
99.2    
99.6    
-found 30 predictions from path traversal
Error with prediction: snap lend_intergenic: 4144, rend_intergenic: 2726  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 33002, rend_intergenic: 31290  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34694, rend_intergenic: 33168  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 36145, rend_intergenic: 35547  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 54865, rend_intergenic: 52307  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 65678, rend_intergenic: 62807  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 73380, rend_intergenic: 70119  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 90965, rend_intergenic: 76727  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 100177, rend_intergenic: 98891  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 101170, rend_intergenic: 100392  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 118090, rend_intergenic: 114277  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 20 predictions persist after filtering for low support