-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_9/scaffold_9_2849031-3048437

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_9-snap.617-T1
Valid prediction for Augustus_model.g14499.t1
Valid prediction for snap_scaffold_9-snap.594-T1
Valid prediction for Augustus_model.g14495.t1
Valid prediction for GlimmerHMM_glimmerT_21805-T1
Valid prediction for snap_scaffold_9-snap.608-T1
Valid prediction for GlimmerHMM_glimmerT_21798-T1
Valid prediction for snap_scaffold_9-snap.626-T1
Valid prediction for Augustus_model.g14491.t1
Valid prediction for Augustus_model.g14497.t1
Valid prediction for snap_scaffold_9-snap.624-T1
Valid prediction for snap_scaffold_9-snap.620-T1
Valid prediction for snap_scaffold_9-snap.610-T1
Valid prediction for snap_scaffold_9-snap.600-T1
Valid prediction for snap_scaffold_9-snap.597-T1
Valid prediction for snap_scaffold_9-snap.605-T1
Valid prediction for GlimmerHMM_glimmerT_21795-T1
Valid prediction for snap_scaffold_9-snap.607-T1
Valid prediction for snap_scaffold_9-snap.625-T1
Valid prediction for snap_scaffold_9-snap.606-T1
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for Augustus_model.g14494.t1
Valid prediction for snap_scaffold_9-snap.611-T1
Valid prediction for HiQ_model.g14488.t1
Valid prediction for GlimmerHMM_glimmerT_21807-T1
Valid prediction for GlimmerHMM_glimmerT_21806-T1
Valid prediction for CodingQuarry_transcript_62126-T1
Valid prediction for Augustus_model.g14503.t1
Valid prediction for snap_scaffold_9-snap.628-T1
Valid prediction for GlimmerHMM_glimmerT_21793-T1
Valid prediction for snap_scaffold_9-snap.596-T1
Valid prediction for Augustus_model.g14496.t1
Valid prediction for Augustus_model.g14501.t1
Valid prediction for GlimmerHMM_glimmerT_21801-T1
Valid prediction for snap_scaffold_9-snap.614-T1
Valid prediction for snap_scaffold_9-snap.618-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_21800-T1
Valid prediction for GlimmerHMM_glimmerT_21788-T1
Valid prediction for snap_scaffold_9-snap.603-T1
Valid prediction for GlimmerHMM_glimmerT_21789-T1
Valid prediction for snap_scaffold_9-snap.604-T1
Valid prediction for GlimmerHMM_glimmerT_21797-T1
Valid prediction for snap_scaffold_9-snap.598-T1
Valid prediction for snap_scaffold_9-snap.599-T1
Valid prediction for Augustus_model.g14492.t1
Valid prediction for snap_scaffold_9-snap.615-T1
Valid prediction for GlimmerHMM_glimmerT_21802-T1
Valid prediction for snap_scaffold_9-snap.613-T1
Valid prediction for snap_scaffold_9-snap.619-T1
Valid prediction for snap_scaffold_9-snap.616-T1
Valid prediction for Augustus_model.g14493.t1
Valid prediction for GlimmerHMM_glimmerT_21804-T1
Valid prediction for snap_scaffold_9-snap.595-T1
Valid prediction for snap_scaffold_9-snap.623-T1
Valid prediction for GlimmerHMM_glimmerT_21792-T1
Valid prediction for snap_scaffold_9-snap.612-T1
Valid prediction for snap_scaffold_9-snap.602-T1
Valid prediction for snap_scaffold_9-snap.621-T1
Valid prediction for GlimmerHMM_glimmerT_21799-T1
Valid prediction for Augustus_model.g14489.t1
Valid prediction for GlimmerHMM_glimmerT_21790-T1
Valid prediction for snap_scaffold_9-snap.627-T1
Valid prediction for Augustus_model.g14502.t1
Valid prediction for snap_scaffold_9-snap.609-T1
Valid prediction for snap_scaffold_9-snap.601-T1
Valid prediction for GlimmerHMM_glimmerT_21791-T1
Valid prediction for GlimmerHMM_glimmerT_21803-T1
Valid prediction for Augustus_model.g14498.t1
Valid prediction for snap_scaffold_9-snap.622-T1
Valid prediction for HiQ_model.g14490.t1
Valid prediction for GlimmerHMM_glimmerT_21796-T1
Valid prediction for Augustus_model.g14500.t1
Valid prediction for GlimmerHMM_glimmerT_21794-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 41256, rend_intergenic: 37139  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 125529, rend_intergenic: 123517  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 137829, rend_intergenic: 131607  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 143206, rend_intergenic: 142410  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 164776, rend_intergenic: 152844  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 193207, rend_intergenic: 191802  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 195161, rend_intergenic: 193243  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 199407
-exon list size: 338


building trellis

0.3    
0.6    
0.9    
1.2    
1.5    
1.8    
2.1    
2.4    
2.6    
2.9    
3.2    
3.5    
3.8    
4.1    
4.4    
4.7    
5.0    
5.3    
5.6    
5.9    
6.2    
6.5    
6.8    
7.1    
7.4    
7.6    
7.9    
8.2    
8.5    
8.8    
9.1    
9.4    
9.7    
10.0    
10.3    
10.6    
10.9    
11.2    
11.5    
11.8    
12.1    
12.4    
12.6    
12.9    
13.2    
13.5    
13.8    
14.1    
14.4    
14.7    
15.0    
15.3    
15.6    
15.9    
16.2    
16.5    
16.8    
17.1    
17.4    
17.6    
17.9    
18.2    
18.5    
18.8    
19.1    
19.4    
19.7    
20.0    
20.3    
20.6    
20.9    
21.2    
21.5    
21.8    
22.1    
22.4    
22.6    
22.9    
23.2    
23.5    
23.8    
24.1    
24.4    
24.7    
25.0    
25.3    
25.6    
25.9    
26.2    
26.5    
26.8    
27.1    
27.4    
27.6    
27.9    
28.2    
28.5    
28.8    
29.1    
29.4    
29.7    
30.0    
30.3    
30.6    
30.9    
31.2    
31.5    
31.8    
32.1    
32.4    
32.6    
32.9    
33.2    
33.5    
33.8    
34.1    
34.4    
34.7    
35.0    
35.3    
35.6    
35.9    
36.2    
36.5    
36.8    
37.1    
37.4    
37.6    
37.9    
38.2    
38.5    
38.8    
39.1    
39.4    
39.7    
40.0    
40.3    
40.6    
40.9    
41.2    
41.5    
41.8    
42.1    
42.4    
42.6    
42.9    
43.2    
43.5    
43.8    
44.1    
44.4    
44.7    
45.0    
45.3    
45.6    
45.9    
46.2    
46.5    
46.8    
47.1    
47.4    
47.6    
47.9    
48.2    
48.5    
48.8    
49.1    
49.4    
49.7    
50.0    
50.3    
50.6    
50.9    
51.2    
51.5    
51.8    
52.1    
52.4    
52.6    
52.9    
53.2    
53.5    
53.8    
54.1    
54.4    
54.7    
55.0    
55.3    
55.6    
55.9    
56.2    
56.5    
56.8    
57.1    
57.4    
57.6    
57.9    
58.2    
58.5    
58.8    
59.1    
59.4    
59.7    
60.0    
60.3    
60.6    
60.9    
61.2    
61.5    
61.8    
62.1    
62.4    
62.6    
62.9    
63.2    
63.5    
63.8    
64.1    
64.4    
64.7    
65.0    
65.3    
65.6    
65.9    
66.2    
66.5    
66.8    
67.1    
67.4    
67.6    
67.9    
68.2    
68.5    
68.8    
69.1    
69.4    
69.7    
70.0    
70.3    
70.6    
70.9    
71.2    
71.5    
71.8    
72.1    
72.4    
72.6    
72.9    
73.2    
73.5    
73.8    
74.1    
74.4    
74.7    
75.0    
75.3    
75.6    
75.9    
76.2    
76.5    
76.8    
77.1    
77.4    
77.6    
77.9    
78.2    
78.5    
78.8    
79.1    
79.4    
79.7    
80.0    
80.3    
80.6    
80.9    
81.2    
81.5    
81.8    
82.1    
82.4    
82.6    
82.9    
83.2    
83.5    
83.8    
84.1    
84.4    
84.7    
85.0    
85.3    
85.6    
85.9    
86.2    
86.5    
86.8    
87.1    
87.4    
87.6    
87.9    
88.2    
88.5    
88.8    
89.1    
89.4    
89.7    
90.0    
90.3    
90.6    
90.9    
91.2    
91.5    
91.8    
92.1    
92.4    
92.6    
92.9    
93.2    
93.5    
93.8    
94.1    
94.4    
94.7    
95.0    
95.3    
95.6    
95.9    
96.2    
96.5    
96.8    
97.1    
97.4    
97.6    
97.9    
98.2    
98.5    
98.8    
99.1    
99.4    
99.7    
-found 24 predictions from path traversal
Error with prediction: snap lend_intergenic: 41256, rend_intergenic: 37139  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 125529, rend_intergenic: 123517  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 137829, rend_intergenic: 131607  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 143206, rend_intergenic: 142410  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 164776, rend_intergenic: 152844  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 193207, rend_intergenic: 191802  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 195161, rend_intergenic: 193243  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 19 predictions persist after filtering for low support