-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_9/scaffold_9_1995409-2114911

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_9-snap.436-T1
Valid prediction for snap_scaffold_9-snap.428-T1
Valid prediction for Augustus_model.g14431.t1
Valid prediction for GlimmerHMM_glimmerT_21683-T1
Valid prediction for snap_scaffold_9-snap.451-T1
Valid prediction for Augustus_model.g14428.t1
Valid prediction for GlimmerHMM_glimmerT_21694-T1
Valid prediction for snap_scaffold_9-snap.447-T1
Valid prediction for snap_scaffold_9-snap.430-T1
Valid prediction for Augustus_model.g14417.t1
Valid prediction for Augustus_model.g14433.t1
Valid prediction for Augustus_model.g14426.t1
Valid prediction for GlimmerHMM_glimmerT_21689-T1
Valid prediction for Augustus_model.g14419.t1
Valid prediction for snap_scaffold_9-snap.434-T1
Valid prediction for snap_scaffold_9-snap.438-T1
Valid prediction for snap_scaffold_9-snap.458-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for snap_scaffold_9-snap.456-T1
Valid prediction for Augustus_model.g14422.t1
Valid prediction for snap_scaffold_9-snap.442-T1
Valid prediction for snap_scaffold_9-snap.448-T1
Valid prediction for Augustus_model.g14423.t1
Valid prediction for GlimmerHMM_glimmerT_21691-T1
Valid prediction for snap_scaffold_9-snap.431-T1
Valid prediction for snap_scaffold_9-snap.457-T1
Valid prediction for snap_scaffold_9-snap.440-T1
Valid prediction for GlimmerHMM_glimmerT_21696-T1
Valid prediction for snap_scaffold_9-snap.449-T1
Valid prediction for snap_scaffold_9-snap.455-T1
Valid prediction for GlimmerHMM_glimmerT_21686-T1
Valid prediction for snap_scaffold_9-snap.443-T1
Valid prediction for snap_scaffold_9-snap.452-T1
Valid prediction for snap_scaffold_9-snap.454-T1
Valid prediction for snap_scaffold_9-snap.435-T1
Valid prediction for snap_scaffold_9-snap.453-T1
Valid prediction for Augustus_model.g14432.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_21682-T1
Valid prediction for GlimmerHMM_glimmerT_21684-T1
Valid prediction for Augustus_model.g14425.t1
Valid prediction for Augustus_model.g14424.t1
Valid prediction for snap_scaffold_9-snap.437-T1
Valid prediction for snap_scaffold_9-snap.445-T1
Valid prediction for Augustus_model.g14436.t1
Valid prediction for snap_scaffold_9-snap.433-T1
Valid prediction for snap_scaffold_9-snap.446-T1
Valid prediction for Augustus_model.g14429.t1
Valid prediction for GlimmerHMM_glimmerT_21693-T1
Valid prediction for snap_scaffold_9-snap.441-T1
Valid prediction for Augustus_model.g14418.t1
Valid prediction for snap_scaffold_9-snap.444-T1
Valid prediction for GlimmerHMM_glimmerT_21698-T1
Valid prediction for snap_scaffold_9-snap.459-T1
Valid prediction for snap_scaffold_9-snap.450-T1
Valid prediction for Augustus_model.g14420.t1
Valid prediction for GlimmerHMM_glimmerT_21697-T1
Valid prediction for GlimmerHMM_glimmerT_21687-T1
Valid prediction for GlimmerHMM_glimmerT_21690-T1
Valid prediction for Augustus_model.g14421.t1
Valid prediction for GlimmerHMM_glimmerT_21692-T1
Valid prediction for GlimmerHMM_glimmerT_21688-T1
Valid prediction for GlimmerHMM_glimmerT_21685-T1
Valid prediction for Augustus_model.g14437.t1
Valid prediction for snap_scaffold_9-snap.427-T1
Valid prediction for snap_scaffold_9-snap.429-T1
Valid prediction for snap_scaffold_9-snap.432-T1
Valid prediction for GlimmerHMM_glimmerT_21699-T1
Couldn't classify 49196, 49666
Sorry, prediction pasa_asmbl_55780.p1 fails validation.
(GAG)	 CT	49196-49666	GA	AGG
Valid prediction for Augustus_model.g14416.t1
Valid prediction for Augustus_model.g14427.t1
Valid prediction for snap_scaffold_9-snap.439-T1
Valid prediction for GlimmerHMM_glimmerT_21695-T1
Valid prediction for Augustus_model.g14435.t1
Valid prediction for pasa_asmbl_54861.p1
Valid prediction for HiQ_model.g14434.t1
Valid prediction for Augustus_model.g14430.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 7346, rend_intergenic: 5597  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 13730, rend_intergenic: 10630  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 55609, rend_intergenic: 54116  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 75387, rend_intergenic: 69571  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 81462, rend_intergenic: 75773  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 110084, rend_intergenic: 85665  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 113344, rend_intergenic: 110407  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 119503
-exon list size: 248


building trellis

0.4    
0.8    
1.2    
1.6    
2.0    
2.4    
2.8    
3.2    
3.6    
4.0    
4.4    
4.8    
5.2    
5.6    
6.0    
6.4    
6.8    
7.2    
7.6    
8.0    
8.4    
8.8    
9.2    
9.6    
10.0    
10.4    
10.8    
11.2    
11.6    
12.0    
12.4    
12.8    
13.2    
13.6    
14.0    
14.4    
14.8    
15.2    
15.6    
16.0    
16.4    
16.8    
17.2    
17.6    
18.0    
18.4    
18.8    
19.2    
19.6    
20.0    
20.4    
20.8    
21.2    
21.6    
22.0    
22.4    
22.8    
23.2    
23.6    
24.0    
24.4    
24.8    
25.2    
25.6    
26.0    
26.4    
26.8    
27.2    
27.6    
28.0    
28.4    
28.8    
29.2    
29.6    
30.0    
30.4    
30.8    
31.2    
31.6    
32.0    
32.4    
32.8    
33.2    
33.6    
34.0    
34.4    
34.8    
35.2    
35.6    
36.0    
36.4    
36.8    
37.2    
37.6    
38.0    
38.4    
38.8    
39.2    
39.6    
40.0    
40.4    
40.8    
41.2    
41.6    
42.0    
42.4    
42.8    
43.2    
43.6    
44.0    
44.4    
44.8    
45.2    
45.6    
46.0    
46.4    
46.8    
47.2    
47.6    
48.0    
48.4    
48.8    
49.2    
49.6    
50.0    
50.4    
50.8    
51.2    
51.6    
52.0    
52.4    
52.8    
53.2    
53.6    
54.0    
54.4    
54.8    
55.2    
55.6    
56.0    
56.4    
56.8    
57.2    
57.6    
58.0    
58.4    
58.8    
59.2    
59.6    
60.0    
60.4    
60.8    
61.2    
61.6    
62.0    
62.4    
62.8    
63.2    
63.6    
64.0    
64.4    
64.8    
65.2    
65.6    
66.0    
66.4    
66.8    
67.2    
67.6    
68.0    
68.4    
68.8    
69.2    
69.6    
70.0    
70.4    
70.8    
71.2    
71.6    
72.0    
72.4    
72.8    
73.2    
73.6    
74.0    
74.4    
74.8    
75.2    
75.6    
76.0    
76.4    
76.8    
77.2    
77.6    
78.0    
78.4    
78.8    
79.2    
79.6    
80.0    
80.4    
80.8    
81.2    
81.6    
82.0    
82.4    
82.8    
83.2    
83.6    
84.0    
84.4    
84.8    
85.2    
85.6    
86.0    
86.4    
86.8    
87.2    
87.6    
88.0    
88.4    
88.8    
89.2    
89.6    
90.0    
90.4    
90.8    
91.2    
91.6    
92.0    
92.4    
92.8    
93.2    
93.6    
94.0    
94.4    
94.8    
95.2    
95.6    
96.0    
96.4    
96.8    
97.2    
97.6    
98.0    
98.4    
98.8    
99.2    
99.6    
-found 29 predictions from path traversal
Error with prediction: snap lend_intergenic: 7346, rend_intergenic: 5597  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 13730, rend_intergenic: 10630  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 55609, rend_intergenic: 54116  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 75387, rend_intergenic: 69571  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 81462, rend_intergenic: 75773  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 110084, rend_intergenic: 85665  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 113344, rend_intergenic: 110407  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 22 predictions persist after filtering for low support