-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_9/scaffold_9_18483257-18536572

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_23873-T1
Valid prediction for Augustus_model.g15888.t1
Valid prediction for Augustus_model.g15885.t1
Valid prediction for snap_scaffold_9-snap.3684-T1
Valid prediction for GlimmerHMM_glimmerT_23878-T1
Valid prediction for snap_scaffold_9-snap.3683-T1
Valid prediction for GlimmerHMM_glimmerT_23871-T1
Valid prediction for snap_scaffold_9-snap.3675-T1
Valid prediction for snap_scaffold_9-snap.3679-T1
Valid prediction for GlimmerHMM_glimmerT_23874-T1
Valid prediction for snap_scaffold_9-snap.3678-T1
Valid prediction for snap_scaffold_9-snap.3673-T1
Valid prediction for snap_scaffold_9-snap.3682-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_9-snap.3677-T1
Valid prediction for snap_scaffold_9-snap.3680-T1
Valid prediction for GlimmerHMM_glimmerT_23875-T1
Valid prediction for snap_scaffold_9-snap.3681-T1
Valid prediction for Augustus_model.g15884.t1
Valid prediction for GlimmerHMM_glimmerT_23876-T1
Valid prediction for Augustus_model.g15887.t1
Valid prediction for GlimmerHMM_glimmerT_23870-T1
Valid prediction for snap_scaffold_9-snap.3674-T1
Valid prediction for GlimmerHMM_glimmerT_23877-T1
Valid prediction for Augustus_model.g15886.t1
Valid prediction for snap_scaffold_9-snap.3676-T1
Valid prediction for GlimmerHMM_glimmerT_23872-T1
Valid prediction for snap_scaffold_9-snap.3685-T1
Couldn't classify 33586, 34554
Sorry, prediction pasa_asmbl_55714.p1 fails validation.
(CAC)	 AC	33586-34554	AT	GAA
Valid prediction for GlimmerHMM_glimmerT_23879-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 52798, rend_intergenic: 49662  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 53316
-exon list size: 84


building trellis

1.2    
2.3    
3.5    
4.7    
5.8    
7.0    
8.1    
9.3    
10.5    
11.6    
12.8    
14.0    
15.1    
16.3    
17.4    
18.6    
19.8    
20.9    
22.1    
23.3    
24.4    
25.6    
26.7    
27.9    
29.1    
30.2    
31.4    
32.6    
33.7    
34.9    
36.0    
37.2    
38.4    
39.5    
40.7    
41.9    
43.0    
44.2    
45.3    
46.5    
47.7    
48.8    
50.0    
51.2    
52.3    
53.5    
54.7    
55.8    
57.0    
58.1    
59.3    
60.5    
61.6    
62.8    
64.0    
65.1    
66.3    
67.4    
68.6    
69.8    
70.9    
72.1    
73.3    
74.4    
75.6    
76.7    
77.9    
79.1    
80.2    
81.4    
82.6    
83.7    
84.9    
86.0    
87.2    
88.4    
89.5    
90.7    
91.9    
93.0    
94.2    
95.3    
96.5    
97.7    
98.8    
-found 13 predictions from path traversal
Error with prediction: snap lend_intergenic: 52798, rend_intergenic: 49662  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 11 predictions persist after filtering for low support