-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_9/scaffold_9_18032430-18337659

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_9-snap.3604-T1
Valid prediction for snap_scaffold_9-snap.3635-T1
Valid prediction for GlimmerHMM_glimmerT_23826-T1
Valid prediction for snap_scaffold_9-snap.3617-T1
Valid prediction for Augustus_model.g15848.t1
Valid prediction for snap_scaffold_9-snap.3601-T1
Valid prediction for snap_scaffold_9-snap.3615-T1
Valid prediction for GlimmerHMM_glimmerT_23829-T1
Valid prediction for GlimmerHMM_glimmerT_23815-T1
Valid prediction for snap_scaffold_9-snap.3602-T1
Sorry, intron length (6) is less than minimum required (10)
Valid prediction for snap_scaffold_9-snap.3610-T1
Valid prediction for GlimmerHMM_glimmerT_23811-T1
Valid prediction for Augustus_model.g15849.t1
Valid prediction for Augustus_model.g15855.t1
Valid prediction for GlimmerHMM_glimmerT_23830-T1
Valid prediction for GlimmerHMM_glimmerT_23828-T1
Valid prediction for GlimmerHMM_glimmerT_23821-T1
Valid prediction for snap_scaffold_9-snap.3626-T1
Valid prediction for snap_scaffold_9-snap.3608-T1
Valid prediction for GlimmerHMM_glimmerT_23834-T1
Valid prediction for Augustus_model.g15847.t1
Valid prediction for snap_scaffold_9-snap.3631-T1
Valid prediction for snap_scaffold_9-snap.3614-T1
Valid prediction for GlimmerHMM_glimmerT_23827-T1
Valid prediction for snap_scaffold_9-snap.3621-T1
Valid prediction for snap_scaffold_9-snap.3613-T1
Valid prediction for Augustus_model.g15853.t1
Valid prediction for GlimmerHMM_glimmerT_23818-T1
Valid prediction for snap_scaffold_9-snap.3606-T1
Valid prediction for snap_scaffold_9-snap.3611-T1
Valid prediction for Augustus_model.g15850.t1
Valid prediction for GlimmerHMM_glimmerT_23812-T1
Valid prediction for snap_scaffold_9-snap.3623-T1
Valid prediction for GlimmerHMM_glimmerT_23819-T1
Valid prediction for snap_scaffold_9-snap.3599-T1
Valid prediction for snap_scaffold_9-snap.3607-T1
Valid prediction for Augustus_model.g15854.t1
Valid prediction for GlimmerHMM_glimmerT_23817-T1
Valid prediction for GlimmerHMM_glimmerT_23820-T1
Valid prediction for Augustus_model.g15852.t1
Valid prediction for snap_scaffold_9-snap.3630-T1
Valid prediction for GlimmerHMM_glimmerT_23813-T1
Valid prediction for snap_scaffold_9-snap.3600-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_9-snap.3632-T1
Valid prediction for snap_scaffold_9-snap.3629-T1
Valid prediction for GlimmerHMM_glimmerT_23832-T1
Valid prediction for snap_scaffold_9-snap.3633-T1
Valid prediction for Augustus_model.g15860.t1
Valid prediction for snap_scaffold_9-snap.3634-T1
Valid prediction for GlimmerHMM_glimmerT_23816-T1
Valid prediction for snap_scaffold_9-snap.3603-T1
Valid prediction for Augustus_model.g15851.t1
Valid prediction for Augustus_model.g15846.t1
Valid prediction for GlimmerHMM_glimmerT_23837-T1
Valid prediction for GlimmerHMM_glimmerT_23822-T1
Valid prediction for snap_scaffold_9-snap.3597-T1
Valid prediction for GlimmerHMM_glimmerT_23836-T1
Valid prediction for snap_scaffold_9-snap.3618-T1
Valid prediction for GlimmerHMM_glimmerT_23833-T1
Valid prediction for snap_scaffold_9-snap.3627-T1
Valid prediction for GlimmerHMM_glimmerT_23814-T1
Valid prediction for Augustus_model.g15859.t1
Valid prediction for snap_scaffold_9-snap.3605-T1
Valid prediction for snap_scaffold_9-snap.3598-T1
Valid prediction for snap_scaffold_9-snap.3625-T1
Valid prediction for GlimmerHMM_glimmerT_23831-T1
Valid prediction for snap_scaffold_9-snap.3624-T1
Valid prediction for GlimmerHMM_glimmerT_23835-T1
Valid prediction for GlimmerHMM_glimmerT_23825-T1
Valid prediction for snap_scaffold_9-snap.3619-T1
Valid prediction for Augustus_model.g15857.t1
Valid prediction for snap_scaffold_9-snap.3636-T1
Valid prediction for snap_scaffold_9-snap.3628-T1
Valid prediction for snap_scaffold_9-snap.3622-T1
Valid prediction for Augustus_model.g15856.t1
Valid prediction for GlimmerHMM_glimmerT_23824-T1
Valid prediction for Augustus_model.g15858.t1
Valid prediction for snap_scaffold_9-snap.3620-T1
Valid prediction for GlimmerHMM_glimmerT_23823-T1
Valid prediction for snap_scaffold_9-snap.3609-T1
Valid prediction for GlimmerHMM_glimmerT_23838-T1
Valid prediction for snap_scaffold_9-snap.3616-T1
Valid prediction for snap_scaffold_9-snap.3612-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 17339, rend_intergenic: 6617  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62308, rend_intergenic: 61040  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 81692, rend_intergenic: 77159  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 109137, rend_intergenic: 89318  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 115837, rend_intergenic: 111743  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 150401, rend_intergenic: 147662  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 163327, rend_intergenic: 161040  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 189482, rend_intergenic: 187085  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 285874, rend_intergenic: 272453  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 301976, rend_intergenic: 293673  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 305230
-exon list size: 311


building trellis

0.3    
0.6    
1.0    
1.3    
1.6    
1.9    
2.2    
2.6    
2.9    
3.2    
3.5    
3.8    
4.2    
4.5    
4.8    
5.1    
5.4    
5.8    
6.1    
6.4    
6.7    
7.0    
7.3    
7.7    
8.0    
8.3    
8.6    
8.9    
9.3    
9.6    
9.9    
10.2    
10.5    
10.9    
11.2    
11.5    
11.8    
12.1    
12.5    
12.8    
13.1    
13.4    
13.7    
14.1    
14.4    
14.7    
15.0    
15.3    
15.7    
16.0    
16.3    
16.6    
16.9    
17.3    
17.6    
17.9    
18.2    
18.5    
18.8    
19.2    
19.5    
19.8    
20.1    
20.4    
20.8    
21.1    
21.4    
21.7    
22.0    
22.4    
22.7    
23.0    
23.3    
23.6    
24.0    
24.3    
24.6    
24.9    
25.2    
25.6    
25.9    
26.2    
26.5    
26.8    
27.2    
27.5    
27.8    
28.1    
28.4    
28.8    
29.1    
29.4    
29.7    
30.0    
30.4    
30.7    
31.0    
31.3    
31.6    
31.9    
32.3    
32.6    
32.9    
33.2    
33.5    
33.9    
34.2    
34.5    
34.8    
35.1    
35.5    
35.8    
36.1    
36.4    
36.7    
37.1    
37.4    
37.7    
38.0    
38.3    
38.7    
39.0    
39.3    
39.6    
39.9    
40.3    
40.6    
40.9    
41.2    
41.5    
41.9    
42.2    
42.5    
42.8    
43.1    
43.5    
43.8    
44.1    
44.4    
44.7    
45.0    
45.4    
45.7    
46.0    
46.3    
46.6    
47.0    
47.3    
47.6    
47.9    
48.2    
48.6    
48.9    
49.2    
49.5    
49.8    
50.2    
50.5    
50.8    
51.1    
51.4    
51.8    
52.1    
52.4    
52.7    
53.0    
53.4    
53.7    
54.0    
54.3    
54.6    
55.0    
55.3    
55.6    
55.9    
56.2    
56.5    
56.9    
57.2    
57.5    
57.8    
58.1    
58.5    
58.8    
59.1    
59.4    
59.7    
60.1    
60.4    
60.7    
61.0    
61.3    
61.7    
62.0    
62.3    
62.6    
62.9    
63.3    
63.6    
63.9    
64.2    
64.5    
64.9    
65.2    
65.5    
65.8    
66.1    
66.5    
66.8    
67.1    
67.4    
67.7    
68.1    
68.4    
68.7    
69.0    
69.3    
69.6    
70.0    
70.3    
70.6    
70.9    
71.2    
71.6    
71.9    
72.2    
72.5    
72.8    
73.2    
73.5    
73.8    
74.1    
74.4    
74.8    
75.1    
75.4    
75.7    
76.0    
76.4    
76.7    
77.0    
77.3    
77.6    
78.0    
78.3    
78.6    
78.9    
79.2    
79.6    
79.9    
80.2    
80.5    
80.8    
81.2    
81.5    
81.8    
82.1    
82.4    
82.7    
83.1    
83.4    
83.7    
84.0    
84.3    
84.7    
85.0    
85.3    
85.6    
85.9    
86.3    
86.6    
86.9    
87.2    
87.5    
87.9    
88.2    
88.5    
88.8    
89.1    
89.5    
89.8    
90.1    
90.4    
90.7    
91.1    
91.4    
91.7    
92.0    
92.3    
92.7    
93.0    
93.3    
93.6    
93.9    
94.2    
94.6    
94.9    
95.2    
95.5    
95.8    
96.2    
96.5    
96.8    
97.1    
97.4    
97.8    
98.1    
98.4    
98.7    
99.0    
99.4    
99.7    
-found 29 predictions from path traversal
Error with prediction: snap lend_intergenic: 17339, rend_intergenic: 6617  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62308, rend_intergenic: 61040  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 81692, rend_intergenic: 77159  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 109137, rend_intergenic: 89318  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 115837, rend_intergenic: 111743  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 150401, rend_intergenic: 147662  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 163327, rend_intergenic: 161040  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 189482, rend_intergenic: 187085  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 285874, rend_intergenic: 272453  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 301976, rend_intergenic: 293673  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 17 predictions persist after filtering for low support