-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_9/scaffold_9_17866057-18034257

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_23788-T1
Valid prediction for GlimmerHMM_glimmerT_23806-T1
Valid prediction for GlimmerHMM_glimmerT_23808-T1
Valid prediction for snap_scaffold_9-snap.3579-T1
Valid prediction for Augustus_model.g15844.t1
Valid prediction for GlimmerHMM_glimmerT_23801-T1
Valid prediction for Augustus_model.g15842.t1
Valid prediction for GlimmerHMM_glimmerT_23800-T1
Valid prediction for GlimmerHMM_glimmerT_23807-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_23797-T1
Valid prediction for Augustus_model.g15836.t1
Valid prediction for snap_scaffold_9-snap.3589-T1
Valid prediction for GlimmerHMM_glimmerT_23802-T1
Valid prediction for GlimmerHMM_glimmerT_23803-T1
Valid prediction for snap_scaffold_9-snap.3572-T1
Couldn't classify 132352, 132654
Sorry, prediction pasa_asmbl_55757.p1 fails validation.
(ATG)	 CT	132352-132654	CG	TCC
Valid prediction for snap_scaffold_9-snap.3585-T1
Valid prediction for snap_scaffold_9-snap.3592-T1
Valid prediction for GlimmerHMM_glimmerT_23799-T1
Valid prediction for snap_scaffold_9-snap.3571-T1
Valid prediction for GlimmerHMM_glimmerT_23789-T1
Valid prediction for snap_scaffold_9-snap.3596-T1
Valid prediction for snap_scaffold_9-snap.3587-T1
Valid prediction for snap_scaffold_9-snap.3594-T1
Valid prediction for GlimmerHMM_glimmerT_23809-T1
Valid prediction for GlimmerHMM_glimmerT_23795-T1
Valid prediction for Augustus_model.g15837.t1
Valid prediction for GlimmerHMM_glimmerT_23787-T1
Valid prediction for snap_scaffold_9-snap.3593-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_23796-T1
Valid prediction for GlimmerHMM_glimmerT_23790-T1
Valid prediction for snap_scaffold_9-snap.3575-T1
Valid prediction for snap_scaffold_9-snap.3583-T1
Valid prediction for snap_scaffold_9-snap.3584-T1
Valid prediction for GlimmerHMM_glimmerT_23794-T1
Valid prediction for snap_scaffold_9-snap.3574-T1
Valid prediction for GlimmerHMM_glimmerT_23792-T1
Valid prediction for snap_scaffold_9-snap.3576-T1
Valid prediction for snap_scaffold_9-snap.3590-T1
Valid prediction for Augustus_model.g15839.t1
Valid prediction for snap_scaffold_9-snap.3591-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for snap_scaffold_9-snap.3569-T1
Valid prediction for Augustus_model.g15835.t1
Valid prediction for GlimmerHMM_glimmerT_23805-T1
Valid prediction for CodingQuarry_transcript_62472-T1
Valid prediction for snap_scaffold_9-snap.3568-T1
Valid prediction for Augustus_model.g15840.t1
Valid prediction for GlimmerHMM_glimmerT_23786-T1
Valid prediction for snap_scaffold_9-snap.3580-T1
Valid prediction for snap_scaffold_9-snap.3567-T1
Valid prediction for snap_scaffold_9-snap.3578-T1
Valid prediction for snap_scaffold_9-snap.3588-T1
Valid prediction for Augustus_model.g15841.t1
Valid prediction for snap_scaffold_9-snap.3595-T1
Valid prediction for GlimmerHMM_glimmerT_23793-T1
Valid prediction for pasa_asmbl_55696.p1
Valid prediction for Augustus_model.g15838.t1
Valid prediction for GlimmerHMM_glimmerT_23810-T1
Valid prediction for snap_scaffold_9-snap.3586-T1
Valid prediction for snap_scaffold_9-snap.3577-T1
Valid prediction for snap_scaffold_9-snap.3582-T1
Valid prediction for CodingQuarry_transcript_62471-T1
Valid prediction for Augustus_model.g15843.t1
Valid prediction for Augustus_model.g15845.t1
Valid prediction for snap_scaffold_9-snap.3573-T1
Valid prediction for GlimmerHMM_glimmerT_23798-T1
Couldn't classify 142443, 142778
Sorry, prediction pasa_asmbl_55695.p1 fails validation.
(CAT)	 AA	142443-142778	GC	GGG
Valid prediction for GlimmerHMM_glimmerT_23791-T1
Valid prediction for snap_scaffold_9-snap.3570-T1
Valid prediction for snap_scaffold_9-snap.3581-T1
Valid prediction for GlimmerHMM_glimmerT_23804-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 24637, rend_intergenic: 13122  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 25722, rend_intergenic: 25220  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 72812, rend_intergenic: 71882  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 109644, rend_intergenic: 107088  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 128450, rend_intergenic: 119433  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 141565, rend_intergenic: 137199  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 150225, rend_intergenic: 144797  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 163732, rend_intergenic: 154053  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 168201
-exon list size: 196


building trellis

0.5    
1.0    
1.5    
2.0    
2.5    
3.0    
3.5    
4.0    
4.5    
5.1    
5.6    
6.1    
6.6    
7.1    
7.6    
8.1    
8.6    
9.1    
9.6    
10.1    
10.6    
11.1    
11.6    
12.1    
12.6    
13.1    
13.6    
14.1    
14.6    
15.2    
15.7    
16.2    
16.7    
17.2    
17.7    
18.2    
18.7    
19.2    
19.7    
20.2    
20.7    
21.2    
21.7    
22.2    
22.7    
23.2    
23.7    
24.2    
24.7    
25.3    
25.8    
26.3    
26.8    
27.3    
27.8    
28.3    
28.8    
29.3    
29.8    
30.3    
30.8    
31.3    
31.8    
32.3    
32.8    
33.3    
33.8    
34.3    
34.8    
35.4    
35.9    
36.4    
36.9    
37.4    
37.9    
38.4    
38.9    
39.4    
39.9    
40.4    
40.9    
41.4    
41.9    
42.4    
42.9    
43.4    
43.9    
44.4    
44.9    
45.5    
46.0    
46.5    
47.0    
47.5    
48.0    
48.5    
49.0    
49.5    
50.0    
50.5    
51.0    
51.5    
52.0    
52.5    
53.0    
53.5    
54.0    
54.5    
55.1    
55.6    
56.1    
56.6    
57.1    
57.6    
58.1    
58.6    
59.1    
59.6    
60.1    
60.6    
61.1    
61.6    
62.1    
62.6    
63.1    
63.6    
64.1    
64.6    
65.2    
65.7    
66.2    
66.7    
67.2    
67.7    
68.2    
68.7    
69.2    
69.7    
70.2    
70.7    
71.2    
71.7    
72.2    
72.7    
73.2    
73.7    
74.2    
74.7    
75.3    
75.8    
76.3    
76.8    
77.3    
77.8    
78.3    
78.8    
79.3    
79.8    
80.3    
80.8    
81.3    
81.8    
82.3    
82.8    
83.3    
83.8    
84.3    
84.8    
85.4    
85.9    
86.4    
86.9    
87.4    
87.9    
88.4    
88.9    
89.4    
89.9    
90.4    
90.9    
91.4    
91.9    
92.4    
92.9    
93.4    
93.9    
94.4    
94.9    
95.5    
96.0    
96.5    
97.0    
97.5    
98.0    
98.5    
99.0    
99.5    
-found 24 predictions from path traversal
Error with prediction: snap lend_intergenic: 24637, rend_intergenic: 13122  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 25722, rend_intergenic: 25220  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 72812, rend_intergenic: 71882  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 109644, rend_intergenic: 107088  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 128450, rend_intergenic: 119433  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 141565, rend_intergenic: 137199  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 150225, rend_intergenic: 144797  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 163732, rend_intergenic: 154053  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 11 predictions persist after filtering for low support