-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_9/scaffold_9_16851455-17109552

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g15773.t1
Valid prediction for GlimmerHMM_glimmerT_23696-T1
Valid prediction for snap_scaffold_9-snap.3431-T1
Valid prediction for CodingQuarry_transcript_62452-T1
Valid prediction for pasa_asmbl_54679.p1
Valid prediction for Augustus_model.g15770.t1
Valid prediction for GlimmerHMM_glimmerT_23683-T1
Valid prediction for HiQ_model.g15768.t1
Valid prediction for GlimmerHMM_glimmerT_23682-T1
Valid prediction for snap_scaffold_9-snap.3424-T1
Valid prediction for GlimmerHMM_glimmerT_23680-T1
Valid prediction for snap_scaffold_9-snap.3454-T1
Valid prediction for snap_scaffold_9-snap.3446-T1
Valid prediction for snap_scaffold_9-snap.3429-T1
Valid prediction for GlimmerHMM_glimmerT_23678-T1
Valid prediction for snap_scaffold_9-snap.3434-T1
Valid prediction for snap_scaffold_9-snap.3432-T1
Valid prediction for snap_scaffold_9-snap.3422-T1
Valid prediction for GlimmerHMM_glimmerT_23689-T1
Valid prediction for GlimmerHMM_glimmerT_23691-T1
Valid prediction for GlimmerHMM_glimmerT_23673-T1
Valid prediction for GlimmerHMM_glimmerT_23681-T1
Valid prediction for snap_scaffold_9-snap.3433-T1
Valid prediction for GlimmerHMM_glimmerT_23684-T1
Valid prediction for snap_scaffold_9-snap.3450-T1
Valid prediction for Augustus_model.g15769.t1
Valid prediction for GlimmerHMM_glimmerT_23677-T1
Valid prediction for GlimmerHMM_glimmerT_23674-T1
Valid prediction for GlimmerHMM_glimmerT_23685-T1
Valid prediction for snap_scaffold_9-snap.3427-T1
Valid prediction for GlimmerHMM_glimmerT_23686-T1
Valid prediction for pasa_asmbl_54626.p1
Valid prediction for GlimmerHMM_glimmerT_23675-T1
Valid prediction for snap_scaffold_9-snap.3449-T1
Valid prediction for GlimmerHMM_glimmerT_23697-T1
Valid prediction for snap_scaffold_9-snap.3448-T1
Valid prediction for snap_scaffold_9-snap.3441-T1
Valid prediction for GlimmerHMM_glimmerT_23679-T1
Valid prediction for snap_scaffold_9-snap.3435-T1
Valid prediction for GlimmerHMM_glimmerT_23693-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_23672-T1
Valid prediction for GlimmerHMM_glimmerT_23694-T1
Valid prediction for snap_scaffold_9-snap.3436-T1
Valid prediction for snap_scaffold_9-snap.3438-T1
Valid prediction for Augustus_model.g15777.t1
Valid prediction for snap_scaffold_9-snap.3439-T1
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for Augustus_model.g15776.t1
Valid prediction for snap_scaffold_9-snap.3428-T1
Valid prediction for snap_scaffold_9-snap.3440-T1
Valid prediction for snap_scaffold_9-snap.3419-T1
Valid prediction for snap_scaffold_9-snap.3452-T1
Valid prediction for snap_scaffold_9-snap.3420-T1
Valid prediction for GlimmerHMM_glimmerT_23695-T1
Valid prediction for GlimmerHMM_glimmerT_23676-T1
Valid prediction for snap_scaffold_9-snap.3445-T1
Valid prediction for GlimmerHMM_glimmerT_23690-T1
Valid prediction for snap_scaffold_9-snap.3451-T1
Valid prediction for Augustus_model.g15772.t1
Valid prediction for snap_scaffold_9-snap.3426-T1
Valid prediction for GlimmerHMM_glimmerT_23692-T1
Valid prediction for Augustus_model.g15767.t1
Valid prediction for snap_scaffold_9-snap.3430-T1
Valid prediction for snap_scaffold_9-snap.3443-T1
Valid prediction for snap_scaffold_9-snap.3444-T1
Valid prediction for snap_scaffold_9-snap.3442-T1
Valid prediction for GlimmerHMM_glimmerT_23688-T1
Valid prediction for snap_scaffold_9-snap.3423-T1
Valid prediction for Augustus_model.g15778.t1
Valid prediction for snap_scaffold_9-snap.3425-T1
Valid prediction for Augustus_model.g15774.t1
Valid prediction for Augustus_model.g15771.t1
Valid prediction for snap_scaffold_9-snap.3421-T1
Valid prediction for snap_scaffold_9-snap.3453-T1
Valid prediction for GlimmerHMM_glimmerT_23698-T1
Valid prediction for Augustus_model.g15775.t1
Valid prediction for GlimmerHMM_glimmerT_23671-T1
Valid prediction for snap_scaffold_9-snap.3437-T1
Valid prediction for GlimmerHMM_glimmerT_23687-T1
Valid prediction for Augustus_model.g15779.t1
Valid prediction for snap_scaffold_9-snap.3447-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 27559, rend_intergenic: 26309  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 76623, rend_intergenic: 73863  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 255966, rend_intergenic: 253541  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 258098
-exon list size: 245


building trellis

0.4    
0.8    
1.2    
1.6    
2.0    
2.4    
2.8    
3.2    
3.6    
4.0    
4.5    
4.9    
5.3    
5.7    
6.1    
6.5    
6.9    
7.3    
7.7    
8.1    
8.5    
8.9    
9.3    
9.7    
10.1    
10.5    
10.9    
11.3    
11.7    
12.1    
12.6    
13.0    
13.4    
13.8    
14.2    
14.6    
15.0    
15.4    
15.8    
16.2    
16.6    
17.0    
17.4    
17.8    
18.2    
18.6    
19.0    
19.4    
19.8    
20.2    
20.6    
21.1    
21.5    
21.9    
22.3    
22.7    
23.1    
23.5    
23.9    
24.3    
24.7    
25.1    
25.5    
25.9    
26.3    
26.7    
27.1    
27.5    
27.9    
28.3    
28.7    
29.1    
29.6    
30.0    
30.4    
30.8    
31.2    
31.6    
32.0    
32.4    
32.8    
33.2    
33.6    
34.0    
34.4    
34.8    
35.2    
35.6    
36.0    
36.4    
36.8    
37.2    
37.7    
38.1    
38.5    
38.9    
39.3    
39.7    
40.1    
40.5    
40.9    
41.3    
41.7    
42.1    
42.5    
42.9    
43.3    
43.7    
44.1    
44.5    
44.9    
45.3    
45.7    
46.2    
46.6    
47.0    
47.4    
47.8    
48.2    
48.6    
49.0    
49.4    
49.8    
50.2    
50.6    
51.0    
51.4    
51.8    
52.2    
52.6    
53.0    
53.4    
53.8    
54.3    
54.7    
55.1    
55.5    
55.9    
56.3    
56.7    
57.1    
57.5    
57.9    
58.3    
58.7    
59.1    
59.5    
59.9    
60.3    
60.7    
61.1    
61.5    
61.9    
62.3    
62.8    
63.2    
63.6    
64.0    
64.4    
64.8    
65.2    
65.6    
66.0    
66.4    
66.8    
67.2    
67.6    
68.0    
68.4    
68.8    
69.2    
69.6    
70.0    
70.4    
70.9    
71.3    
71.7    
72.1    
72.5    
72.9    
73.3    
73.7    
74.1    
74.5    
74.9    
75.3    
75.7    
76.1    
76.5    
76.9    
77.3    
77.7    
78.1    
78.5    
78.9    
79.4    
79.8    
80.2    
80.6    
81.0    
81.4    
81.8    
82.2    
82.6    
83.0    
83.4    
83.8    
84.2    
84.6    
85.0    
85.4    
85.8    
86.2    
86.6    
87.0    
87.4    
87.9    
88.3    
88.7    
89.1    
89.5    
89.9    
90.3    
90.7    
91.1    
91.5    
91.9    
92.3    
92.7    
93.1    
93.5    
93.9    
94.3    
94.7    
95.1    
95.5    
96.0    
96.4    
96.8    
97.2    
97.6    
98.0    
98.4    
98.8    
99.2    
99.6    
-found 27 predictions from path traversal
Error with prediction: snap lend_intergenic: 27559, rend_intergenic: 26309  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 76623, rend_intergenic: 73863  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 255966, rend_intergenic: 253541  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 17 predictions persist after filtering for low support