-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_9/scaffold_9_16041346-16206641

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_9-snap.3266-T1
Valid prediction for GlimmerHMM_glimmerT_23577-T1
Valid prediction for snap_scaffold_9-snap.3258-T1
Valid prediction for snap_scaffold_9-snap.3250-T1
Valid prediction for GlimmerHMM_glimmerT_23571-T1
Valid prediction for snap_scaffold_9-snap.3263-T1
Valid prediction for Augustus_model.g15694.t1
Valid prediction for snap_scaffold_9-snap.3251-T1
Valid prediction for snap_scaffold_9-snap.3254-T1
Valid prediction for snap_scaffold_9-snap.3261-T1
Valid prediction for GlimmerHMM_glimmerT_23572-T1
Valid prediction for snap_scaffold_9-snap.3280-T1
Valid prediction for GlimmerHMM_glimmerT_23587-T1
Valid prediction for GlimmerHMM_glimmerT_23566-T1
Valid prediction for GlimmerHMM_glimmerT_23576-T1
Valid prediction for snap_scaffold_9-snap.3256-T1
Valid prediction for snap_scaffold_9-snap.3282-T1
Valid prediction for snap_scaffold_9-snap.3275-T1
Valid prediction for Augustus_model.g15700.t1
Valid prediction for snap_scaffold_9-snap.3271-T1
Valid prediction for GlimmerHMM_glimmerT_23578-T1
Valid prediction for snap_scaffold_9-snap.3274-T1
Valid prediction for GlimmerHMM_glimmerT_23581-T1
Valid prediction for snap_scaffold_9-snap.3277-T1
Valid prediction for snap_scaffold_9-snap.3247-T1
Valid prediction for Augustus_model.g15693.t1
Valid prediction for snap_scaffold_9-snap.3279-T1
Valid prediction for GlimmerHMM_glimmerT_23568-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_23584-T1
Valid prediction for snap_scaffold_9-snap.3259-T1
Valid prediction for snap_scaffold_9-snap.3273-T1
Valid prediction for snap_scaffold_9-snap.3255-T1
Valid prediction for Augustus_model.g15695.t1
Valid prediction for snap_scaffold_9-snap.3252-T1
Valid prediction for GlimmerHMM_glimmerT_23582-T1
Valid prediction for snap_scaffold_9-snap.3257-T1
Valid prediction for snap_scaffold_9-snap.3253-T1
Valid prediction for GlimmerHMM_glimmerT_23580-T1
Valid prediction for Augustus_model.g15699.t1
Valid prediction for snap_scaffold_9-snap.3262-T1
Valid prediction for snap_scaffold_9-snap.3283-T1
Valid prediction for GlimmerHMM_glimmerT_23569-T1
Valid prediction for Augustus_model.g15701.t1
Valid prediction for GlimmerHMM_glimmerT_23565-T1
Valid prediction for Augustus_model.g15697.t1
Valid prediction for snap_scaffold_9-snap.3270-T1
Valid prediction for GlimmerHMM_glimmerT_23573-T1
Valid prediction for snap_scaffold_9-snap.3248-T1
Valid prediction for GlimmerHMM_glimmerT_23575-T1
Valid prediction for HiQ_model.g15696.t1
Valid prediction for Augustus_model.g15698.t1
Valid prediction for snap_scaffold_9-snap.3278-T1
Valid prediction for snap_scaffold_9-snap.3269-T1
Valid prediction for GlimmerHMM_glimmerT_23583-T1
Valid prediction for snap_scaffold_9-snap.3260-T1
Valid prediction for GlimmerHMM_glimmerT_23570-T1
Valid prediction for snap_scaffold_9-snap.3268-T1
Valid prediction for GlimmerHMM_glimmerT_23586-T1
Valid prediction for snap_scaffold_9-snap.3272-T1
Valid prediction for snap_scaffold_9-snap.3246-T1
Valid prediction for GlimmerHMM_glimmerT_23574-T1
Valid prediction for GlimmerHMM_glimmerT_23585-T1
Valid prediction for GlimmerHMM_glimmerT_23564-T1
Valid prediction for CodingQuarry_transcript_62428-T1
Valid prediction for snap_scaffold_9-snap.3267-T1
Valid prediction for snap_scaffold_9-snap.3281-T1
Valid prediction for GlimmerHMM_glimmerT_23567-T1
Valid prediction for snap_scaffold_9-snap.3265-T1
Valid prediction for GlimmerHMM_glimmerT_23579-T1
Valid prediction for snap_scaffold_9-snap.3264-T1
Valid prediction for snap_scaffold_9-snap.3249-T1
Valid prediction for snap_scaffold_9-snap.3276-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 7912, rend_intergenic: 7477  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 18004, rend_intergenic: 8997  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 21343, rend_intergenic: 18764  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 29789, rend_intergenic: 25567  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43984, rend_intergenic: 30618  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 53350, rend_intergenic: 51070  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62015, rend_intergenic: 56597  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 64885, rend_intergenic: 64670  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 72307, rend_intergenic: 64998  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 76635, rend_intergenic: 74188  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 83459, rend_intergenic: 79533  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 94039, rend_intergenic: 83515  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 101115, rend_intergenic: 94372  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 110050, rend_intergenic: 101304  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 122507, rend_intergenic: 117790  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 126407, rend_intergenic: 122824  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 131029, rend_intergenic: 129341  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 131832, rend_intergenic: 131681  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 138984, rend_intergenic: 135524  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 142394, rend_intergenic: 139713  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 145992, rend_intergenic: 142807  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 147366, rend_intergenic: 146638  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 158924, rend_intergenic: 150216  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 165296
-exon list size: 281


building trellis

0.4    
0.7    
1.1    
1.4    
1.8    
2.1    
2.5    
2.8    
3.2    
3.5    
3.9    
4.2    
4.6    
4.9    
5.3    
5.7    
6.0    
6.4    
6.7    
7.1    
7.4    
7.8    
8.1    
8.5    
8.8    
9.2    
9.5    
9.9    
10.2    
10.6    
11.0    
11.3    
11.7    
12.0    
12.4    
12.7    
13.1    
13.4    
13.8    
14.1    
14.5    
14.8    
15.2    
15.5    
15.9    
16.3    
16.6    
17.0    
17.3    
17.7    
18.0    
18.4    
18.7    
19.1    
19.4    
19.8    
20.1    
20.5    
20.8    
21.2    
21.6    
21.9    
22.3    
22.6    
23.0    
23.3    
23.7    
24.0    
24.4    
24.7    
25.1    
25.4    
25.8    
26.1    
26.5    
26.9    
27.2    
27.6    
27.9    
28.3    
28.6    
29.0    
29.3    
29.7    
30.0    
30.4    
30.7    
31.1    
31.4    
31.8    
32.2    
32.5    
32.9    
33.2    
33.6    
33.9    
34.3    
34.6    
35.0    
35.3    
35.7    
36.0    
36.4    
36.7    
37.1    
37.5    
37.8    
38.2    
38.5    
38.9    
39.2    
39.6    
39.9    
40.3    
40.6    
41.0    
41.3    
41.7    
42.0    
42.4    
42.8    
43.1    
43.5    
43.8    
44.2    
44.5    
44.9    
45.2    
45.6    
45.9    
46.3    
46.6    
47.0    
47.3    
47.7    
48.1    
48.4    
48.8    
49.1    
49.5    
49.8    
50.2    
50.5    
50.9    
51.2    
51.6    
51.9    
52.3    
52.7    
53.0    
53.4    
53.7    
54.1    
54.4    
54.8    
55.1    
55.5    
55.8    
56.2    
56.5    
56.9    
57.2    
57.6    
58.0    
58.3    
58.7    
59.0    
59.4    
59.7    
60.1    
60.4    
60.8    
61.1    
61.5    
61.8    
62.2    
62.5    
62.9    
63.3    
63.6    
64.0    
64.3    
64.7    
65.0    
65.4    
65.7    
66.1    
66.4    
66.8    
67.1    
67.5    
67.8    
68.2    
68.6    
68.9    
69.3    
69.6    
70.0    
70.3    
70.7    
71.0    
71.4    
71.7    
72.1    
72.4    
72.8    
73.1    
73.5    
73.9    
74.2    
74.6    
74.9    
75.3    
75.6    
76.0    
76.3    
76.7    
77.0    
77.4    
77.7    
78.1    
78.4    
78.8    
79.2    
79.5    
79.9    
80.2    
80.6    
80.9    
81.3    
81.6    
82.0    
82.3    
82.7    
83.0    
83.4    
83.7    
84.1    
84.5    
84.8    
85.2    
85.5    
85.9    
86.2    
86.6    
86.9    
87.3    
87.6    
88.0    
88.3    
88.7    
89.0    
89.4    
89.8    
90.1    
90.5    
90.8    
91.2    
91.5    
91.9    
92.2    
92.6    
92.9    
93.3    
93.6    
94.0    
94.3    
94.7    
95.1    
95.4    
95.8    
96.1    
96.5    
96.8    
97.2    
97.5    
97.9    
98.2    
98.6    
98.9    
99.3    
99.6    
-found 29 predictions from path traversal
Error with prediction: snap lend_intergenic: 7912, rend_intergenic: 7477  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 18004, rend_intergenic: 8997  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 21343, rend_intergenic: 18764  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 29789, rend_intergenic: 25567  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43984, rend_intergenic: 30618  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 53350, rend_intergenic: 51070  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62015, rend_intergenic: 56597  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 64885, rend_intergenic: 64670  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 72307, rend_intergenic: 64998  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 76635, rend_intergenic: 74188  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 83459, rend_intergenic: 79533  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 94039, rend_intergenic: 83515  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 101115, rend_intergenic: 94372  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 110050, rend_intergenic: 101304  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 122507, rend_intergenic: 117790  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 126407, rend_intergenic: 122824  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 131029, rend_intergenic: 129341  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 131832, rend_intergenic: 131681  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 138984, rend_intergenic: 135524  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 142394, rend_intergenic: 139713  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 145992, rend_intergenic: 142807  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 147366, rend_intergenic: 146638  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 158924, rend_intergenic: 150216  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 10 predictions persist after filtering for low support